Multiple sequence alignment - TraesCS2A01G343800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G343800 chr2A 100.000 3052 0 0 684 3735 580720071 580723122 0.000000e+00 5637.0
1 TraesCS2A01G343800 chr2A 90.585 1009 86 8 1735 2739 580848781 580849784 0.000000e+00 1328.0
2 TraesCS2A01G343800 chr2A 89.298 841 69 13 1913 2737 580760279 580761114 0.000000e+00 1035.0
3 TraesCS2A01G343800 chr2A 100.000 435 0 0 1 435 580719388 580719822 0.000000e+00 804.0
4 TraesCS2A01G343800 chr2A 93.455 275 11 6 1033 1306 580758450 580758718 5.810000e-108 401.0
5 TraesCS2A01G343800 chr2A 87.797 295 33 2 1562 1855 580759896 580760188 3.570000e-90 342.0
6 TraesCS2A01G343800 chr2A 91.892 185 14 1 1 184 415310037 415310221 1.330000e-64 257.0
7 TraesCS2A01G343800 chr2A 90.811 185 14 2 1 184 121873718 121873900 1.040000e-60 244.0
8 TraesCS2A01G343800 chr2A 88.172 93 6 4 719 806 580758160 580758252 5.100000e-19 106.0
9 TraesCS2A01G343800 chr2B 95.560 2027 78 11 719 2737 486951112 486953134 0.000000e+00 3234.0
10 TraesCS2A01G343800 chr2B 92.996 928 59 3 2810 3735 483661988 483662911 0.000000e+00 1349.0
11 TraesCS2A01G343800 chr2B 92.457 928 61 4 2810 3735 744556106 744555186 0.000000e+00 1317.0
12 TraesCS2A01G343800 chr2B 90.705 979 82 5 1767 2738 486976478 486977454 0.000000e+00 1295.0
13 TraesCS2A01G343800 chr2B 95.223 628 30 0 2110 2737 486966057 486966684 0.000000e+00 994.0
14 TraesCS2A01G343800 chr2B 85.845 438 27 10 882 1291 486963874 486964304 2.060000e-117 433.0
15 TraesCS2A01G343800 chr2B 79.421 656 100 19 2110 2737 486843652 486844300 7.410000e-117 431.0
16 TraesCS2A01G343800 chr2B 81.303 476 61 13 1565 2033 486965520 486965974 9.860000e-96 361.0
17 TraesCS2A01G343800 chr2B 86.611 239 31 1 196 433 107390892 107391130 2.860000e-66 263.0
18 TraesCS2A01G343800 chr2B 90.323 62 3 1 824 885 486951248 486951306 1.110000e-10 78.7
19 TraesCS2A01G343800 chr2D 96.712 1186 31 6 1638 2819 413690844 413692025 0.000000e+00 1967.0
20 TraesCS2A01G343800 chr2D 90.198 1010 93 3 1735 2739 413774056 413775064 0.000000e+00 1312.0
21 TraesCS2A01G343800 chr2D 89.444 900 47 26 824 1687 413689973 413690860 0.000000e+00 1092.0
22 TraesCS2A01G343800 chr2D 95.860 628 26 0 2110 2737 413724931 413725558 0.000000e+00 1016.0
23 TraesCS2A01G343800 chr2D 92.653 245 12 3 1047 1291 413722947 413723185 7.680000e-92 348.0
24 TraesCS2A01G343800 chr2D 81.818 363 50 10 1671 2025 413724510 413724864 1.310000e-74 291.0
25 TraesCS2A01G343800 chr2D 94.675 169 8 1 741 909 413689702 413689869 1.030000e-65 261.0
26 TraesCS2A01G343800 chr2D 74.534 644 134 19 2107 2730 413290572 413291205 1.720000e-63 254.0
27 TraesCS2A01G343800 chr2D 91.667 132 9 2 790 919 413689845 413689976 8.240000e-42 182.0
28 TraesCS2A01G343800 chr1A 93.985 931 50 4 2810 3735 22057975 22058904 0.000000e+00 1404.0
29 TraesCS2A01G343800 chr1A 93.514 185 11 1 1 184 395084252 395084436 1.320000e-69 274.0
30 TraesCS2A01G343800 chr1A 91.304 184 15 1 2 184 71287013 71287196 2.230000e-62 250.0
31 TraesCS2A01G343800 chr7A 93.462 933 58 3 2806 3735 502384991 502384059 0.000000e+00 1382.0
32 TraesCS2A01G343800 chr7A 86.885 244 27 5 191 433 214860945 214860706 6.150000e-68 268.0
33 TraesCS2A01G343800 chr7A 90.811 185 16 1 1 184 544573684 544573868 2.880000e-61 246.0
34 TraesCS2A01G343800 chr4B 93.541 929 57 3 2810 3735 609362856 609361928 0.000000e+00 1380.0
35 TraesCS2A01G343800 chr4B 92.988 927 61 2 2810 3735 74666753 74667676 0.000000e+00 1349.0
36 TraesCS2A01G343800 chr1B 93.441 930 57 4 2810 3735 635928975 635928046 0.000000e+00 1376.0
37 TraesCS2A01G343800 chr3B 92.996 928 59 4 2810 3735 767686009 767686932 0.000000e+00 1349.0
38 TraesCS2A01G343800 chr5A 92.903 930 59 5 2810 3735 608851865 608850939 0.000000e+00 1345.0
39 TraesCS2A01G343800 chr6A 93.407 182 11 1 4 184 174458159 174457978 6.150000e-68 268.0
40 TraesCS2A01G343800 chr6A 90.860 186 14 3 1 184 174821324 174821140 2.880000e-61 246.0
41 TraesCS2A01G343800 chr3A 91.848 184 13 2 2 184 223940159 223940341 4.790000e-64 255.0
42 TraesCS2A01G343800 chr3A 92.614 176 11 2 12 186 194978926 194979100 6.190000e-63 252.0
43 TraesCS2A01G343800 chr5D 85.259 251 28 6 185 433 95865702 95865459 2.230000e-62 250.0
44 TraesCS2A01G343800 chr1D 86.207 58 3 4 185 241 382748895 382748948 1.450000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G343800 chr2A 580719388 580723122 3734 False 3220.500000 5637 100.000000 1 3735 2 chr2A.!!$F4 3734
1 TraesCS2A01G343800 chr2A 580848781 580849784 1003 False 1328.000000 1328 90.585000 1735 2739 1 chr2A.!!$F3 1004
2 TraesCS2A01G343800 chr2A 580758160 580761114 2954 False 471.000000 1035 89.680500 719 2737 4 chr2A.!!$F5 2018
3 TraesCS2A01G343800 chr2B 486951112 486953134 2022 False 1656.350000 3234 92.941500 719 2737 2 chr2B.!!$F5 2018
4 TraesCS2A01G343800 chr2B 483661988 483662911 923 False 1349.000000 1349 92.996000 2810 3735 1 chr2B.!!$F2 925
5 TraesCS2A01G343800 chr2B 744555186 744556106 920 True 1317.000000 1317 92.457000 2810 3735 1 chr2B.!!$R1 925
6 TraesCS2A01G343800 chr2B 486976478 486977454 976 False 1295.000000 1295 90.705000 1767 2738 1 chr2B.!!$F4 971
7 TraesCS2A01G343800 chr2B 486963874 486966684 2810 False 596.000000 994 87.457000 882 2737 3 chr2B.!!$F6 1855
8 TraesCS2A01G343800 chr2B 486843652 486844300 648 False 431.000000 431 79.421000 2110 2737 1 chr2B.!!$F3 627
9 TraesCS2A01G343800 chr2D 413774056 413775064 1008 False 1312.000000 1312 90.198000 1735 2739 1 chr2D.!!$F2 1004
10 TraesCS2A01G343800 chr2D 413689702 413692025 2323 False 875.500000 1967 93.124500 741 2819 4 chr2D.!!$F3 2078
11 TraesCS2A01G343800 chr2D 413722947 413725558 2611 False 551.666667 1016 90.110333 1047 2737 3 chr2D.!!$F4 1690
12 TraesCS2A01G343800 chr2D 413290572 413291205 633 False 254.000000 254 74.534000 2107 2730 1 chr2D.!!$F1 623
13 TraesCS2A01G343800 chr1A 22057975 22058904 929 False 1404.000000 1404 93.985000 2810 3735 1 chr1A.!!$F1 925
14 TraesCS2A01G343800 chr7A 502384059 502384991 932 True 1382.000000 1382 93.462000 2806 3735 1 chr7A.!!$R2 929
15 TraesCS2A01G343800 chr4B 609361928 609362856 928 True 1380.000000 1380 93.541000 2810 3735 1 chr4B.!!$R1 925
16 TraesCS2A01G343800 chr4B 74666753 74667676 923 False 1349.000000 1349 92.988000 2810 3735 1 chr4B.!!$F1 925
17 TraesCS2A01G343800 chr1B 635928046 635928975 929 True 1376.000000 1376 93.441000 2810 3735 1 chr1B.!!$R1 925
18 TraesCS2A01G343800 chr3B 767686009 767686932 923 False 1349.000000 1349 92.996000 2810 3735 1 chr3B.!!$F1 925
19 TraesCS2A01G343800 chr5A 608850939 608851865 926 True 1345.000000 1345 92.903000 2810 3735 1 chr5A.!!$R1 925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.031010 CAGGCCTAAGACCCTACCCT 60.031 60.0 3.98 0.00 0.00 4.34 F
251 252 0.035630 AGCGCCTTCTGCAAGATCTT 60.036 50.0 2.29 0.88 46.36 2.40 F
384 385 0.040425 AATTCTGTGTCGCGTTTGGC 60.040 50.0 5.77 0.00 38.69 4.52 F
434 435 0.105039 GGCGTCTGGGGTGATCTTAG 59.895 60.0 0.00 0.00 0.00 2.18 F
709 710 0.179134 ATGCTCTGAGTAACCGACGC 60.179 55.0 6.53 0.00 0.00 5.19 F
730 731 0.460284 CAGCAGTACACGTGGGGATC 60.460 60.0 21.57 5.91 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1144 1438 0.169230 CTCTTGAGCTCGTACACGCT 59.831 55.000 9.64 5.66 39.61 5.07 R
1582 2884 1.227973 GGGCCGATCTTTGCTAGGG 60.228 63.158 0.00 0.00 0.00 3.53 R
1919 3290 1.425066 ACTTTGCTGAATCCCCTGTGA 59.575 47.619 0.00 0.00 0.00 3.58 R
2462 3860 3.089874 CTTCCGCATCCCCTCCCA 61.090 66.667 0.00 0.00 0.00 4.37 R
2545 3958 1.004918 GTTGCCGGTGTAGAGCTGT 60.005 57.895 1.90 0.00 0.00 4.40 R
2741 4157 8.904834 CATAGCTAGAAGGAGAACTGTTACTAA 58.095 37.037 0.00 0.00 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.875544 CGTTACAATGGTCGATTGGAAT 57.124 40.909 8.31 0.00 45.04 3.01
22 23 5.229921 CGTTACAATGGTCGATTGGAATT 57.770 39.130 8.31 0.00 45.04 2.17
23 24 5.027737 CGTTACAATGGTCGATTGGAATTG 58.972 41.667 8.31 1.99 45.04 2.32
24 25 5.339990 GTTACAATGGTCGATTGGAATTGG 58.660 41.667 8.31 0.00 45.04 3.16
25 26 2.760092 ACAATGGTCGATTGGAATTGGG 59.240 45.455 11.68 0.00 45.20 4.12
26 27 3.023119 CAATGGTCGATTGGAATTGGGA 58.977 45.455 0.00 0.00 38.27 4.37
27 28 3.600448 ATGGTCGATTGGAATTGGGAT 57.400 42.857 0.00 0.00 0.00 3.85
28 29 4.722526 ATGGTCGATTGGAATTGGGATA 57.277 40.909 0.00 0.00 0.00 2.59
29 30 4.722526 TGGTCGATTGGAATTGGGATAT 57.277 40.909 0.00 0.00 0.00 1.63
30 31 4.651778 TGGTCGATTGGAATTGGGATATC 58.348 43.478 0.00 0.00 0.00 1.63
31 32 4.350816 TGGTCGATTGGAATTGGGATATCT 59.649 41.667 2.05 0.00 0.00 1.98
32 33 4.697352 GGTCGATTGGAATTGGGATATCTG 59.303 45.833 2.05 0.00 0.00 2.90
33 34 5.513094 GGTCGATTGGAATTGGGATATCTGA 60.513 44.000 2.05 0.00 0.00 3.27
34 35 5.641209 GTCGATTGGAATTGGGATATCTGAG 59.359 44.000 2.05 0.00 0.00 3.35
35 36 5.307976 TCGATTGGAATTGGGATATCTGAGT 59.692 40.000 2.05 0.00 0.00 3.41
36 37 5.410746 CGATTGGAATTGGGATATCTGAGTG 59.589 44.000 2.05 0.00 0.00 3.51
37 38 4.712051 TGGAATTGGGATATCTGAGTGG 57.288 45.455 2.05 0.00 0.00 4.00
38 39 4.306391 TGGAATTGGGATATCTGAGTGGA 58.694 43.478 2.05 0.00 0.00 4.02
39 40 4.726317 TGGAATTGGGATATCTGAGTGGAA 59.274 41.667 2.05 0.00 0.00 3.53
40 41 5.373555 TGGAATTGGGATATCTGAGTGGAAT 59.626 40.000 2.05 0.00 0.00 3.01
41 42 6.562223 TGGAATTGGGATATCTGAGTGGAATA 59.438 38.462 2.05 0.00 0.00 1.75
42 43 7.240405 TGGAATTGGGATATCTGAGTGGAATAT 59.760 37.037 2.05 0.00 0.00 1.28
43 44 8.772250 GGAATTGGGATATCTGAGTGGAATATA 58.228 37.037 2.05 0.00 0.00 0.86
44 45 9.606631 GAATTGGGATATCTGAGTGGAATATAC 57.393 37.037 2.05 0.00 0.00 1.47
45 46 7.496346 TTGGGATATCTGAGTGGAATATACC 57.504 40.000 2.05 0.00 0.00 2.73
46 47 5.656859 TGGGATATCTGAGTGGAATATACCG 59.343 44.000 2.05 0.00 32.19 4.02
47 48 5.657302 GGGATATCTGAGTGGAATATACCGT 59.343 44.000 2.05 0.00 0.00 4.83
48 49 6.183360 GGGATATCTGAGTGGAATATACCGTC 60.183 46.154 2.05 0.00 0.00 4.79
49 50 4.768130 ATCTGAGTGGAATATACCGTCG 57.232 45.455 0.00 0.00 0.00 5.12
50 51 3.812262 TCTGAGTGGAATATACCGTCGA 58.188 45.455 0.00 0.00 0.00 4.20
51 52 3.813724 TCTGAGTGGAATATACCGTCGAG 59.186 47.826 0.00 0.00 0.00 4.04
52 53 3.548770 TGAGTGGAATATACCGTCGAGT 58.451 45.455 0.00 0.00 0.00 4.18
53 54 3.314357 TGAGTGGAATATACCGTCGAGTG 59.686 47.826 0.00 0.00 0.00 3.51
54 55 2.621998 AGTGGAATATACCGTCGAGTGG 59.378 50.000 2.10 2.10 0.00 4.00
55 56 2.620115 GTGGAATATACCGTCGAGTGGA 59.380 50.000 10.49 0.00 0.00 4.02
56 57 3.255149 GTGGAATATACCGTCGAGTGGAT 59.745 47.826 10.49 0.00 0.00 3.41
57 58 3.504906 TGGAATATACCGTCGAGTGGATC 59.495 47.826 10.49 0.00 0.00 3.36
58 59 3.119566 GGAATATACCGTCGAGTGGATCC 60.120 52.174 4.20 4.20 0.00 3.36
59 60 2.643995 TATACCGTCGAGTGGATCCA 57.356 50.000 11.44 11.44 0.00 3.41
60 61 1.996798 ATACCGTCGAGTGGATCCAT 58.003 50.000 19.62 7.07 0.00 3.41
61 62 1.771565 TACCGTCGAGTGGATCCATT 58.228 50.000 19.62 14.78 0.00 3.16
62 63 0.902531 ACCGTCGAGTGGATCCATTT 59.097 50.000 19.62 9.74 0.00 2.32
63 64 2.104967 ACCGTCGAGTGGATCCATTTA 58.895 47.619 19.62 3.33 0.00 1.40
64 65 2.100916 ACCGTCGAGTGGATCCATTTAG 59.899 50.000 19.62 12.08 0.00 1.85
65 66 2.545952 CCGTCGAGTGGATCCATTTAGG 60.546 54.545 19.62 12.91 39.47 2.69
66 67 2.545952 CGTCGAGTGGATCCATTTAGGG 60.546 54.545 19.62 5.08 38.24 3.53
67 68 2.047061 TCGAGTGGATCCATTTAGGGG 58.953 52.381 19.62 3.80 38.24 4.79
68 69 1.768870 CGAGTGGATCCATTTAGGGGT 59.231 52.381 19.62 0.00 38.24 4.95
69 70 2.172717 CGAGTGGATCCATTTAGGGGTT 59.827 50.000 19.62 0.00 38.24 4.11
70 71 3.555966 GAGTGGATCCATTTAGGGGTTG 58.444 50.000 19.62 0.00 38.24 3.77
71 72 2.926329 AGTGGATCCATTTAGGGGTTGT 59.074 45.455 19.62 0.00 38.24 3.32
72 73 3.336694 AGTGGATCCATTTAGGGGTTGTT 59.663 43.478 19.62 0.00 38.24 2.83
73 74 4.093743 GTGGATCCATTTAGGGGTTGTTT 58.906 43.478 19.62 0.00 38.24 2.83
74 75 4.159693 GTGGATCCATTTAGGGGTTGTTTC 59.840 45.833 19.62 0.00 38.24 2.78
75 76 4.202727 TGGATCCATTTAGGGGTTGTTTCA 60.203 41.667 11.44 0.00 38.24 2.69
76 77 4.775253 GGATCCATTTAGGGGTTGTTTCAA 59.225 41.667 6.95 0.00 38.24 2.69
77 78 5.425217 GGATCCATTTAGGGGTTGTTTCAAT 59.575 40.000 6.95 0.00 38.24 2.57
78 79 5.993748 TCCATTTAGGGGTTGTTTCAATC 57.006 39.130 0.00 0.00 38.24 2.67
79 80 4.461081 TCCATTTAGGGGTTGTTTCAATCG 59.539 41.667 0.00 0.00 38.24 3.34
80 81 4.381505 CCATTTAGGGGTTGTTTCAATCGG 60.382 45.833 0.00 0.00 0.00 4.18
81 82 3.512219 TTAGGGGTTGTTTCAATCGGT 57.488 42.857 0.00 0.00 0.00 4.69
82 83 4.637387 TTAGGGGTTGTTTCAATCGGTA 57.363 40.909 0.00 0.00 0.00 4.02
83 84 3.732048 AGGGGTTGTTTCAATCGGTAT 57.268 42.857 0.00 0.00 0.00 2.73
84 85 3.617284 AGGGGTTGTTTCAATCGGTATC 58.383 45.455 0.00 0.00 0.00 2.24
85 86 3.265995 AGGGGTTGTTTCAATCGGTATCT 59.734 43.478 0.00 0.00 0.00 1.98
86 87 4.014406 GGGGTTGTTTCAATCGGTATCTT 58.986 43.478 0.00 0.00 0.00 2.40
87 88 4.095932 GGGGTTGTTTCAATCGGTATCTTC 59.904 45.833 0.00 0.00 0.00 2.87
88 89 4.941873 GGGTTGTTTCAATCGGTATCTTCT 59.058 41.667 0.00 0.00 0.00 2.85
89 90 5.163754 GGGTTGTTTCAATCGGTATCTTCTG 60.164 44.000 0.00 0.00 0.00 3.02
90 91 5.411669 GGTTGTTTCAATCGGTATCTTCTGT 59.588 40.000 0.00 0.00 0.00 3.41
91 92 6.072673 GGTTGTTTCAATCGGTATCTTCTGTT 60.073 38.462 0.00 0.00 0.00 3.16
92 93 6.480524 TGTTTCAATCGGTATCTTCTGTTG 57.519 37.500 0.00 0.00 0.00 3.33
93 94 5.411361 TGTTTCAATCGGTATCTTCTGTTGG 59.589 40.000 0.00 0.00 0.00 3.77
94 95 4.819105 TCAATCGGTATCTTCTGTTGGT 57.181 40.909 0.00 0.00 0.00 3.67
95 96 4.755411 TCAATCGGTATCTTCTGTTGGTC 58.245 43.478 0.00 0.00 0.00 4.02
96 97 4.466370 TCAATCGGTATCTTCTGTTGGTCT 59.534 41.667 0.00 0.00 0.00 3.85
97 98 5.046591 TCAATCGGTATCTTCTGTTGGTCTT 60.047 40.000 0.00 0.00 0.00 3.01
98 99 4.884668 TCGGTATCTTCTGTTGGTCTTT 57.115 40.909 0.00 0.00 0.00 2.52
99 100 4.566004 TCGGTATCTTCTGTTGGTCTTTG 58.434 43.478 0.00 0.00 0.00 2.77
100 101 4.282449 TCGGTATCTTCTGTTGGTCTTTGA 59.718 41.667 0.00 0.00 0.00 2.69
101 102 4.994852 CGGTATCTTCTGTTGGTCTTTGAA 59.005 41.667 0.00 0.00 0.00 2.69
102 103 5.643777 CGGTATCTTCTGTTGGTCTTTGAAT 59.356 40.000 0.00 0.00 0.00 2.57
103 104 6.402550 CGGTATCTTCTGTTGGTCTTTGAATG 60.403 42.308 0.00 0.00 0.00 2.67
104 105 6.431234 GGTATCTTCTGTTGGTCTTTGAATGT 59.569 38.462 0.00 0.00 0.00 2.71
105 106 6.566197 ATCTTCTGTTGGTCTTTGAATGTC 57.434 37.500 0.00 0.00 0.00 3.06
106 107 5.684704 TCTTCTGTTGGTCTTTGAATGTCT 58.315 37.500 0.00 0.00 0.00 3.41
107 108 6.122277 TCTTCTGTTGGTCTTTGAATGTCTT 58.878 36.000 0.00 0.00 0.00 3.01
108 109 6.603201 TCTTCTGTTGGTCTTTGAATGTCTTT 59.397 34.615 0.00 0.00 0.00 2.52
109 110 6.135290 TCTGTTGGTCTTTGAATGTCTTTG 57.865 37.500 0.00 0.00 0.00 2.77
110 111 5.885352 TCTGTTGGTCTTTGAATGTCTTTGA 59.115 36.000 0.00 0.00 0.00 2.69
111 112 5.890334 TGTTGGTCTTTGAATGTCTTTGAC 58.110 37.500 0.00 0.00 0.00 3.18
112 113 5.652014 TGTTGGTCTTTGAATGTCTTTGACT 59.348 36.000 0.00 0.00 33.15 3.41
113 114 6.183360 TGTTGGTCTTTGAATGTCTTTGACTC 60.183 38.462 0.00 0.00 33.15 3.36
114 115 5.684704 TGGTCTTTGAATGTCTTTGACTCT 58.315 37.500 0.00 0.00 33.15 3.24
115 116 6.826668 TGGTCTTTGAATGTCTTTGACTCTA 58.173 36.000 0.00 0.00 33.15 2.43
116 117 6.931281 TGGTCTTTGAATGTCTTTGACTCTAG 59.069 38.462 0.00 0.00 33.15 2.43
117 118 6.370166 GGTCTTTGAATGTCTTTGACTCTAGG 59.630 42.308 0.00 0.00 33.15 3.02
118 119 6.370166 GTCTTTGAATGTCTTTGACTCTAGGG 59.630 42.308 0.00 0.00 33.15 3.53
119 120 5.825593 TTGAATGTCTTTGACTCTAGGGT 57.174 39.130 0.00 0.00 33.15 4.34
120 121 6.928348 TTGAATGTCTTTGACTCTAGGGTA 57.072 37.500 0.00 0.00 33.15 3.69
121 122 6.531503 TGAATGTCTTTGACTCTAGGGTAG 57.468 41.667 0.00 0.00 33.15 3.18
122 123 6.017192 TGAATGTCTTTGACTCTAGGGTAGT 58.983 40.000 0.00 0.00 33.15 2.73
123 124 5.923733 ATGTCTTTGACTCTAGGGTAGTG 57.076 43.478 0.00 0.00 33.15 2.74
124 125 4.087182 TGTCTTTGACTCTAGGGTAGTGG 58.913 47.826 0.00 0.00 33.15 4.00
125 126 3.097614 TCTTTGACTCTAGGGTAGTGGC 58.902 50.000 0.00 0.00 0.00 5.01
126 127 1.861982 TTGACTCTAGGGTAGTGGCC 58.138 55.000 0.00 0.00 0.00 5.36
127 128 1.008403 TGACTCTAGGGTAGTGGCCT 58.992 55.000 3.32 0.00 0.00 5.19
128 129 1.361543 TGACTCTAGGGTAGTGGCCTT 59.638 52.381 3.32 0.00 0.00 4.35
129 130 1.757699 GACTCTAGGGTAGTGGCCTTG 59.242 57.143 3.32 0.00 0.00 3.61
130 131 1.123928 CTCTAGGGTAGTGGCCTTGG 58.876 60.000 3.32 0.00 0.00 3.61
131 132 0.714180 TCTAGGGTAGTGGCCTTGGA 59.286 55.000 3.32 0.00 0.00 3.53
132 133 1.294068 TCTAGGGTAGTGGCCTTGGAT 59.706 52.381 3.32 0.00 0.00 3.41
133 134 2.520980 TCTAGGGTAGTGGCCTTGGATA 59.479 50.000 3.32 0.00 0.00 2.59
134 135 1.807814 AGGGTAGTGGCCTTGGATAG 58.192 55.000 3.32 0.00 0.00 2.08
136 137 0.765510 GGTAGTGGCCTTGGATAGGG 59.234 60.000 3.32 0.00 44.91 3.53
137 138 1.508256 GTAGTGGCCTTGGATAGGGT 58.492 55.000 3.32 0.00 44.91 4.34
138 139 1.141053 GTAGTGGCCTTGGATAGGGTG 59.859 57.143 3.32 0.00 44.91 4.61
139 140 0.550147 AGTGGCCTTGGATAGGGTGT 60.550 55.000 3.32 0.00 44.91 4.16
140 141 0.107165 GTGGCCTTGGATAGGGTGTC 60.107 60.000 3.32 0.00 44.91 3.67
141 142 0.253160 TGGCCTTGGATAGGGTGTCT 60.253 55.000 3.32 0.00 44.91 3.41
142 143 1.009060 TGGCCTTGGATAGGGTGTCTA 59.991 52.381 3.32 0.00 44.91 2.59
143 144 1.694696 GGCCTTGGATAGGGTGTCTAG 59.305 57.143 0.00 0.00 44.91 2.43
144 145 1.694696 GCCTTGGATAGGGTGTCTAGG 59.305 57.143 0.00 0.00 44.91 3.02
145 146 2.693074 GCCTTGGATAGGGTGTCTAGGA 60.693 54.545 0.00 0.00 44.91 2.94
146 147 2.966516 CCTTGGATAGGGTGTCTAGGAC 59.033 54.545 0.00 0.00 40.67 3.85
147 148 3.630054 CCTTGGATAGGGTGTCTAGGACA 60.630 52.174 0.00 0.00 40.67 4.02
148 149 3.314307 TGGATAGGGTGTCTAGGACAG 57.686 52.381 0.27 0.00 43.57 3.51
149 150 2.091278 TGGATAGGGTGTCTAGGACAGG 60.091 54.545 0.27 0.00 43.57 4.00
150 151 1.964933 GATAGGGTGTCTAGGACAGGC 59.035 57.143 0.27 0.00 43.57 4.85
151 152 0.032416 TAGGGTGTCTAGGACAGGCC 60.032 60.000 0.00 0.00 43.57 5.19
160 161 4.482431 GGACAGGCCTAAGACCCT 57.518 61.111 3.98 0.00 0.00 4.34
161 162 3.629220 GGACAGGCCTAAGACCCTA 57.371 57.895 3.98 0.00 0.00 3.53
162 163 1.121378 GGACAGGCCTAAGACCCTAC 58.879 60.000 3.98 0.00 0.00 3.18
163 164 1.121378 GACAGGCCTAAGACCCTACC 58.879 60.000 3.98 0.00 0.00 3.18
164 165 0.326332 ACAGGCCTAAGACCCTACCC 60.326 60.000 3.98 0.00 0.00 3.69
165 166 0.031010 CAGGCCTAAGACCCTACCCT 60.031 60.000 3.98 0.00 0.00 4.34
166 167 1.219724 CAGGCCTAAGACCCTACCCTA 59.780 57.143 3.98 0.00 0.00 3.53
167 168 1.504221 AGGCCTAAGACCCTACCCTAG 59.496 57.143 1.29 0.00 0.00 3.02
168 169 1.482741 GGCCTAAGACCCTACCCTAGG 60.483 61.905 0.06 0.06 45.81 3.02
169 170 1.219980 GCCTAAGACCCTACCCTAGGT 59.780 57.143 8.29 0.00 44.73 3.08
170 171 2.448577 GCCTAAGACCCTACCCTAGGTA 59.551 54.545 8.29 0.00 44.73 3.08
171 172 3.753519 GCCTAAGACCCTACCCTAGGTAC 60.754 56.522 8.29 0.00 44.73 3.34
172 173 3.464833 CCTAAGACCCTACCCTAGGTACA 59.535 52.174 8.29 0.00 44.73 2.90
173 174 4.107636 CCTAAGACCCTACCCTAGGTACAT 59.892 50.000 8.29 0.00 44.73 2.29
174 175 3.614568 AGACCCTACCCTAGGTACATG 57.385 52.381 8.29 0.00 44.73 3.21
175 176 2.863879 AGACCCTACCCTAGGTACATGT 59.136 50.000 8.29 2.69 44.73 3.21
176 177 3.274153 AGACCCTACCCTAGGTACATGTT 59.726 47.826 2.30 0.00 44.73 2.71
177 178 4.483520 AGACCCTACCCTAGGTACATGTTA 59.516 45.833 2.30 0.00 44.73 2.41
178 179 5.137429 AGACCCTACCCTAGGTACATGTTAT 59.863 44.000 2.30 0.00 44.73 1.89
179 180 5.400870 ACCCTACCCTAGGTACATGTTATC 58.599 45.833 2.30 0.00 44.73 1.75
180 181 4.461781 CCCTACCCTAGGTACATGTTATCG 59.538 50.000 2.30 0.00 44.73 2.92
181 182 5.075493 CCTACCCTAGGTACATGTTATCGT 58.925 45.833 2.30 0.00 41.18 3.73
182 183 5.182760 CCTACCCTAGGTACATGTTATCGTC 59.817 48.000 2.30 0.00 41.18 4.20
183 184 4.539726 ACCCTAGGTACATGTTATCGTCA 58.460 43.478 2.30 0.00 32.11 4.35
184 185 4.583489 ACCCTAGGTACATGTTATCGTCAG 59.417 45.833 2.30 0.00 32.11 3.51
185 186 4.825634 CCCTAGGTACATGTTATCGTCAGA 59.174 45.833 2.30 0.00 0.00 3.27
186 187 5.278364 CCCTAGGTACATGTTATCGTCAGAC 60.278 48.000 2.30 0.00 0.00 3.51
187 188 4.288670 AGGTACATGTTATCGTCAGACG 57.711 45.455 17.33 17.33 44.19 4.18
188 189 3.066342 AGGTACATGTTATCGTCAGACGG 59.934 47.826 22.66 7.31 42.81 4.79
189 190 1.922570 ACATGTTATCGTCAGACGGC 58.077 50.000 22.66 11.07 42.81 5.68
190 191 0.846401 CATGTTATCGTCAGACGGCG 59.154 55.000 22.66 4.80 42.81 6.46
191 192 0.248907 ATGTTATCGTCAGACGGCGG 60.249 55.000 22.66 0.00 42.81 6.13
192 193 1.138247 GTTATCGTCAGACGGCGGT 59.862 57.895 22.66 9.27 42.81 5.68
193 194 1.138036 TTATCGTCAGACGGCGGTG 59.862 57.895 22.66 8.67 42.81 4.94
194 195 2.274232 TTATCGTCAGACGGCGGTGG 62.274 60.000 22.66 0.00 42.81 4.61
206 207 3.691342 CGGTGGCGTGAAGGAGGA 61.691 66.667 0.00 0.00 0.00 3.71
207 208 2.266055 GGTGGCGTGAAGGAGGAG 59.734 66.667 0.00 0.00 0.00 3.69
208 209 2.266055 GTGGCGTGAAGGAGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
209 210 2.119611 TGGCGTGAAGGAGGAGGA 59.880 61.111 0.00 0.00 0.00 3.71
210 211 1.535444 TGGCGTGAAGGAGGAGGAA 60.535 57.895 0.00 0.00 0.00 3.36
211 212 1.219393 GGCGTGAAGGAGGAGGAAG 59.781 63.158 0.00 0.00 0.00 3.46
212 213 1.258445 GGCGTGAAGGAGGAGGAAGA 61.258 60.000 0.00 0.00 0.00 2.87
213 214 0.108567 GCGTGAAGGAGGAGGAAGAC 60.109 60.000 0.00 0.00 0.00 3.01
214 215 0.171455 CGTGAAGGAGGAGGAAGACG 59.829 60.000 0.00 0.00 0.00 4.18
215 216 1.546961 GTGAAGGAGGAGGAAGACGA 58.453 55.000 0.00 0.00 0.00 4.20
216 217 1.202817 GTGAAGGAGGAGGAAGACGAC 59.797 57.143 0.00 0.00 0.00 4.34
217 218 0.452585 GAAGGAGGAGGAAGACGACG 59.547 60.000 0.00 0.00 0.00 5.12
218 219 0.037877 AAGGAGGAGGAAGACGACGA 59.962 55.000 0.00 0.00 0.00 4.20
219 220 0.677414 AGGAGGAGGAAGACGACGAC 60.677 60.000 0.00 0.00 0.00 4.34
220 221 1.424635 GAGGAGGAAGACGACGACG 59.575 63.158 5.58 5.58 45.75 5.12
221 222 1.979831 GAGGAGGAAGACGACGACGG 61.980 65.000 12.58 0.00 44.46 4.79
242 243 4.079090 CGACTACAGCGCCTTCTG 57.921 61.111 2.29 0.00 39.86 3.02
243 244 2.161486 CGACTACAGCGCCTTCTGC 61.161 63.158 2.29 0.00 37.59 4.26
244 245 1.079819 GACTACAGCGCCTTCTGCA 60.080 57.895 2.29 0.00 41.33 4.41
245 246 0.670546 GACTACAGCGCCTTCTGCAA 60.671 55.000 2.29 0.00 41.33 4.08
246 247 0.671781 ACTACAGCGCCTTCTGCAAG 60.672 55.000 2.29 0.00 41.33 4.01
247 248 0.390340 CTACAGCGCCTTCTGCAAGA 60.390 55.000 2.29 0.00 44.68 3.02
248 249 0.250234 TACAGCGCCTTCTGCAAGAT 59.750 50.000 2.29 0.00 46.36 2.40
249 250 1.023513 ACAGCGCCTTCTGCAAGATC 61.024 55.000 2.29 0.00 46.36 2.75
250 251 0.743701 CAGCGCCTTCTGCAAGATCT 60.744 55.000 2.29 0.00 46.36 2.75
251 252 0.035630 AGCGCCTTCTGCAAGATCTT 60.036 50.000 2.29 0.88 46.36 2.40
252 253 0.376502 GCGCCTTCTGCAAGATCTTC 59.623 55.000 4.57 1.60 46.36 2.87
253 254 1.730501 CGCCTTCTGCAAGATCTTCA 58.269 50.000 4.57 6.24 46.36 3.02
254 255 1.664659 CGCCTTCTGCAAGATCTTCAG 59.335 52.381 20.21 20.21 46.36 3.02
255 256 1.401199 GCCTTCTGCAAGATCTTCAGC 59.599 52.381 20.93 16.38 46.36 4.26
256 257 1.664659 CCTTCTGCAAGATCTTCAGCG 59.335 52.381 20.93 16.10 46.36 5.18
257 258 2.344950 CTTCTGCAAGATCTTCAGCGT 58.655 47.619 20.93 0.00 46.36 5.07
258 259 1.718396 TCTGCAAGATCTTCAGCGTG 58.282 50.000 20.93 13.35 38.67 5.34
259 260 1.001293 TCTGCAAGATCTTCAGCGTGT 59.999 47.619 20.93 0.00 38.67 4.49
260 261 2.231235 TCTGCAAGATCTTCAGCGTGTA 59.769 45.455 20.93 5.57 38.67 2.90
261 262 2.602211 CTGCAAGATCTTCAGCGTGTAG 59.398 50.000 4.57 0.00 34.07 2.74
262 263 1.929836 GCAAGATCTTCAGCGTGTAGG 59.070 52.381 4.57 0.00 0.00 3.18
263 264 1.929836 CAAGATCTTCAGCGTGTAGGC 59.070 52.381 4.57 0.00 0.00 3.93
264 265 0.461961 AGATCTTCAGCGTGTAGGCC 59.538 55.000 0.00 0.00 0.00 5.19
265 266 0.872021 GATCTTCAGCGTGTAGGCCG 60.872 60.000 0.00 0.00 0.00 6.13
266 267 1.320344 ATCTTCAGCGTGTAGGCCGA 61.320 55.000 0.00 0.00 0.00 5.54
267 268 1.080093 CTTCAGCGTGTAGGCCGAA 60.080 57.895 0.00 0.00 0.00 4.30
268 269 1.078759 CTTCAGCGTGTAGGCCGAAG 61.079 60.000 0.00 7.79 40.04 3.79
301 302 4.530857 GTGGCGGCGGCATAGTCT 62.531 66.667 38.08 0.00 40.92 3.24
302 303 3.781307 TGGCGGCGGCATAGTCTT 61.781 61.111 33.02 0.00 42.47 3.01
303 304 2.513897 GGCGGCGGCATAGTCTTT 60.514 61.111 29.41 0.00 42.47 2.52
304 305 2.709475 GCGGCGGCATAGTCTTTG 59.291 61.111 9.78 0.00 39.62 2.77
305 306 2.709475 CGGCGGCATAGTCTTTGC 59.291 61.111 10.53 6.73 39.41 3.68
306 307 1.815421 CGGCGGCATAGTCTTTGCT 60.815 57.895 10.53 0.00 40.03 3.91
307 308 1.369091 CGGCGGCATAGTCTTTGCTT 61.369 55.000 10.53 0.00 40.03 3.91
308 309 0.811281 GGCGGCATAGTCTTTGCTTT 59.189 50.000 13.95 0.00 40.03 3.51
309 310 1.202348 GGCGGCATAGTCTTTGCTTTT 59.798 47.619 13.95 0.00 40.03 2.27
310 311 2.352715 GGCGGCATAGTCTTTGCTTTTT 60.353 45.455 13.95 0.00 40.03 1.94
352 353 9.730420 AATATGTACAAAAATCAATAGAACGCC 57.270 29.630 0.00 0.00 0.00 5.68
353 354 6.811253 TGTACAAAAATCAATAGAACGCCT 57.189 33.333 0.00 0.00 0.00 5.52
354 355 7.908827 TGTACAAAAATCAATAGAACGCCTA 57.091 32.000 0.00 0.00 0.00 3.93
355 356 8.325421 TGTACAAAAATCAATAGAACGCCTAA 57.675 30.769 0.00 0.00 0.00 2.69
356 357 8.784994 TGTACAAAAATCAATAGAACGCCTAAA 58.215 29.630 0.00 0.00 0.00 1.85
357 358 9.274065 GTACAAAAATCAATAGAACGCCTAAAG 57.726 33.333 0.00 0.00 0.00 1.85
358 359 7.882179 ACAAAAATCAATAGAACGCCTAAAGT 58.118 30.769 0.00 0.00 0.00 2.66
359 360 8.357402 ACAAAAATCAATAGAACGCCTAAAGTT 58.643 29.630 0.00 0.00 34.07 2.66
360 361 9.191995 CAAAAATCAATAGAACGCCTAAAGTTT 57.808 29.630 0.00 0.00 31.14 2.66
361 362 8.742554 AAAATCAATAGAACGCCTAAAGTTTG 57.257 30.769 0.00 0.00 31.14 2.93
362 363 5.291293 TCAATAGAACGCCTAAAGTTTGC 57.709 39.130 0.00 0.00 31.14 3.68
363 364 4.155280 TCAATAGAACGCCTAAAGTTTGCC 59.845 41.667 0.00 0.00 31.14 4.52
364 365 1.244816 AGAACGCCTAAAGTTTGCCC 58.755 50.000 0.00 0.00 31.14 5.36
365 366 0.955905 GAACGCCTAAAGTTTGCCCA 59.044 50.000 0.00 0.00 31.14 5.36
366 367 1.338655 GAACGCCTAAAGTTTGCCCAA 59.661 47.619 0.00 0.00 31.14 4.12
367 368 1.627864 ACGCCTAAAGTTTGCCCAAT 58.372 45.000 0.00 0.00 0.00 3.16
368 369 1.967779 ACGCCTAAAGTTTGCCCAATT 59.032 42.857 0.00 0.00 0.00 2.32
369 370 2.029380 ACGCCTAAAGTTTGCCCAATTC 60.029 45.455 0.00 0.00 0.00 2.17
370 371 2.231235 CGCCTAAAGTTTGCCCAATTCT 59.769 45.455 0.00 0.00 0.00 2.40
371 372 3.588955 GCCTAAAGTTTGCCCAATTCTG 58.411 45.455 0.00 0.00 0.00 3.02
372 373 3.006859 GCCTAAAGTTTGCCCAATTCTGT 59.993 43.478 0.00 0.00 0.00 3.41
373 374 4.559153 CCTAAAGTTTGCCCAATTCTGTG 58.441 43.478 0.00 0.00 0.00 3.66
374 375 4.039124 CCTAAAGTTTGCCCAATTCTGTGT 59.961 41.667 0.00 0.00 0.00 3.72
375 376 3.733443 AAGTTTGCCCAATTCTGTGTC 57.267 42.857 0.00 0.00 0.00 3.67
376 377 1.608590 AGTTTGCCCAATTCTGTGTCG 59.391 47.619 0.00 0.00 0.00 4.35
377 378 0.313672 TTTGCCCAATTCTGTGTCGC 59.686 50.000 0.00 0.00 0.00 5.19
378 379 1.851021 TTGCCCAATTCTGTGTCGCG 61.851 55.000 0.00 0.00 0.00 5.87
379 380 2.325082 GCCCAATTCTGTGTCGCGT 61.325 57.895 5.77 0.00 0.00 6.01
380 381 1.852067 GCCCAATTCTGTGTCGCGTT 61.852 55.000 5.77 0.00 0.00 4.84
381 382 0.591170 CCCAATTCTGTGTCGCGTTT 59.409 50.000 5.77 0.00 0.00 3.60
382 383 1.662876 CCCAATTCTGTGTCGCGTTTG 60.663 52.381 5.77 0.00 0.00 2.93
383 384 1.662876 CCAATTCTGTGTCGCGTTTGG 60.663 52.381 5.77 4.48 0.00 3.28
384 385 0.040425 AATTCTGTGTCGCGTTTGGC 60.040 50.000 5.77 0.00 38.69 4.52
385 386 1.852067 ATTCTGTGTCGCGTTTGGCC 61.852 55.000 5.77 0.00 38.94 5.36
386 387 4.368808 CTGTGTCGCGTTTGGCCG 62.369 66.667 5.77 0.00 38.94 6.13
387 388 4.893601 TGTGTCGCGTTTGGCCGA 62.894 61.111 5.77 0.00 38.94 5.54
388 389 3.641986 GTGTCGCGTTTGGCCGAA 61.642 61.111 5.77 0.00 38.94 4.30
389 390 2.666862 TGTCGCGTTTGGCCGAAT 60.667 55.556 9.15 0.00 38.94 3.34
390 391 2.255172 TGTCGCGTTTGGCCGAATT 61.255 52.632 9.15 0.00 38.94 2.17
391 392 1.081708 GTCGCGTTTGGCCGAATTT 60.082 52.632 9.15 0.00 38.94 1.82
392 393 0.662077 GTCGCGTTTGGCCGAATTTT 60.662 50.000 9.15 0.00 38.94 1.82
393 394 0.661780 TCGCGTTTGGCCGAATTTTG 60.662 50.000 9.15 0.89 38.94 2.44
394 395 1.613347 CGCGTTTGGCCGAATTTTGG 61.613 55.000 9.15 0.00 38.94 3.28
417 418 5.832568 CCAAGTATGGTTTTAAAAACGGC 57.167 39.130 11.24 4.21 42.18 5.68
418 419 4.383351 CCAAGTATGGTTTTAAAAACGGCG 59.617 41.667 11.24 4.80 42.18 6.46
419 420 4.834357 AGTATGGTTTTAAAAACGGCGT 57.166 36.364 6.77 6.77 0.00 5.68
420 421 4.786507 AGTATGGTTTTAAAAACGGCGTC 58.213 39.130 15.17 0.00 0.00 5.19
421 422 3.994204 ATGGTTTTAAAAACGGCGTCT 57.006 38.095 15.17 0.00 0.00 4.18
422 423 3.067721 TGGTTTTAAAAACGGCGTCTG 57.932 42.857 15.17 0.00 0.00 3.51
423 424 2.223525 TGGTTTTAAAAACGGCGTCTGG 60.224 45.455 15.17 0.00 0.00 3.86
424 425 2.387185 GTTTTAAAAACGGCGTCTGGG 58.613 47.619 15.17 0.00 0.00 4.45
425 426 0.953003 TTTAAAAACGGCGTCTGGGG 59.047 50.000 15.17 0.00 0.00 4.96
426 427 0.179023 TTAAAAACGGCGTCTGGGGT 60.179 50.000 15.17 0.00 0.00 4.95
427 428 0.885596 TAAAAACGGCGTCTGGGGTG 60.886 55.000 15.17 0.00 0.00 4.61
428 429 2.612095 AAAAACGGCGTCTGGGGTGA 62.612 55.000 15.17 0.00 0.00 4.02
429 430 2.406002 AAAACGGCGTCTGGGGTGAT 62.406 55.000 15.17 0.00 0.00 3.06
430 431 2.798148 AAACGGCGTCTGGGGTGATC 62.798 60.000 15.17 0.00 0.00 2.92
431 432 3.461773 CGGCGTCTGGGGTGATCT 61.462 66.667 0.00 0.00 0.00 2.75
432 433 2.990479 GGCGTCTGGGGTGATCTT 59.010 61.111 0.00 0.00 0.00 2.40
433 434 1.672854 CGGCGTCTGGGGTGATCTTA 61.673 60.000 0.00 0.00 0.00 2.10
434 435 0.105039 GGCGTCTGGGGTGATCTTAG 59.895 60.000 0.00 0.00 0.00 2.18
704 705 3.526534 GTTGGAGATGCTCTGAGTAACC 58.473 50.000 6.53 8.01 0.00 2.85
705 706 1.751351 TGGAGATGCTCTGAGTAACCG 59.249 52.381 6.53 0.00 0.00 4.44
706 707 2.025155 GGAGATGCTCTGAGTAACCGA 58.975 52.381 6.53 0.00 0.00 4.69
707 708 2.223618 GGAGATGCTCTGAGTAACCGAC 60.224 54.545 6.53 0.00 0.00 4.79
708 709 1.402259 AGATGCTCTGAGTAACCGACG 59.598 52.381 6.53 0.00 0.00 5.12
709 710 0.179134 ATGCTCTGAGTAACCGACGC 60.179 55.000 6.53 0.00 0.00 5.19
710 711 1.516603 GCTCTGAGTAACCGACGCC 60.517 63.158 6.53 0.00 0.00 5.68
711 712 1.139095 CTCTGAGTAACCGACGCCC 59.861 63.158 0.00 0.00 0.00 6.13
712 713 1.592400 CTCTGAGTAACCGACGCCCA 61.592 60.000 0.00 0.00 0.00 5.36
713 714 1.153823 CTGAGTAACCGACGCCCAG 60.154 63.158 0.00 0.00 0.00 4.45
714 715 2.508663 GAGTAACCGACGCCCAGC 60.509 66.667 0.00 0.00 0.00 4.85
715 716 3.291101 GAGTAACCGACGCCCAGCA 62.291 63.158 0.00 0.00 0.00 4.41
716 717 2.813908 GTAACCGACGCCCAGCAG 60.814 66.667 0.00 0.00 0.00 4.24
717 718 3.307906 TAACCGACGCCCAGCAGT 61.308 61.111 0.00 0.00 0.00 4.40
729 730 1.596934 CAGCAGTACACGTGGGGAT 59.403 57.895 21.57 0.32 0.00 3.85
730 731 0.460284 CAGCAGTACACGTGGGGATC 60.460 60.000 21.57 5.91 0.00 3.36
1004 1215 1.609783 CCCACCCCTTCTGGATGAC 59.390 63.158 0.00 0.00 35.39 3.06
1008 1241 2.158755 CCACCCCTTCTGGATGACATAC 60.159 54.545 0.00 0.00 35.39 2.39
1009 1242 2.505407 CACCCCTTCTGGATGACATACA 59.495 50.000 0.00 0.00 35.39 2.29
1012 1245 2.437281 CCCTTCTGGATGACATACAGCT 59.563 50.000 21.21 0.00 41.17 4.24
1144 1438 1.667154 CGCGAGGAGGAAGATGGTCA 61.667 60.000 0.00 0.00 0.00 4.02
1263 1557 4.282496 TCATCTTCTTCTCTCTACCCCAC 58.718 47.826 0.00 0.00 0.00 4.61
1310 1636 6.016693 TGTTTCTCATGCCAAGAAAATCGTAA 60.017 34.615 9.05 0.00 42.63 3.18
1346 1672 2.954753 CTTGCGTTCCTGTGGCGTC 61.955 63.158 0.00 0.00 0.00 5.19
1609 2911 3.138304 CAAAGATCGGCCCGATTATTCA 58.862 45.455 21.39 0.00 47.00 2.57
1692 3029 5.856126 TGATGAGACACCACGTTAATTTC 57.144 39.130 0.00 0.00 0.00 2.17
1698 3035 6.056428 AGACACCACGTTAATTTCAAGTTC 57.944 37.500 0.00 0.00 0.00 3.01
1721 3058 3.999663 CTGTTTCCTCTGGTCATTCAGAC 59.000 47.826 0.00 0.00 46.83 3.51
1919 3290 7.999450 TTAATTTTCCGTTGTTATAGGTGGT 57.001 32.000 0.00 0.00 0.00 4.16
2462 3860 3.485381 CGACATCAACTACGTCATCGACT 60.485 47.826 0.00 0.00 40.62 4.18
2545 3958 4.813235 GCCAACCAGCCGGCCATA 62.813 66.667 26.15 0.00 42.82 2.74
2874 4295 3.147595 CCCAGCCGTCCGATCTGA 61.148 66.667 9.41 0.00 0.00 3.27
2875 4296 2.105128 CCAGCCGTCCGATCTGAC 59.895 66.667 7.18 7.18 0.00 3.51
2888 4309 0.531974 ATCTGACGTGCAACACCGTT 60.532 50.000 0.00 0.00 35.74 4.44
2905 4326 2.550423 CCGTTAGATCCGAGCTCCTCTA 60.550 54.545 8.47 9.40 0.00 2.43
3213 4637 3.382803 GATGCAGCTCCGCCTCACT 62.383 63.158 0.00 0.00 0.00 3.41
3469 4895 2.233271 GGCCACATGAATGGATGTAGG 58.767 52.381 6.54 0.00 43.02 3.18
3496 4922 3.805971 ACACAGACGGTAGTAGCAAAAAC 59.194 43.478 0.00 0.00 0.00 2.43
3526 4953 6.092122 CACGGTTGTAGCTTTTATCTCAATGA 59.908 38.462 0.00 0.00 0.00 2.57
3534 4961 6.803642 AGCTTTTATCTCAATGATTGAAGCC 58.196 36.000 18.44 6.29 44.21 4.35
3562 4989 3.132289 CCTCTACGGTGGAAGCATTTCTA 59.868 47.826 0.00 0.00 33.68 2.10
3632 5062 5.063564 GCTTTTCTCTATCGTTCGGTTGAAT 59.936 40.000 0.00 0.00 36.29 2.57
3705 5138 3.066203 TCGATAGCACTGATCGCTTACAA 59.934 43.478 0.00 0.00 44.61 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.875544 ATTCCAATCGACCATTGTAACG 57.124 40.909 0.00 0.00 40.51 3.18
1 2 5.339990 CCAATTCCAATCGACCATTGTAAC 58.660 41.667 0.00 0.00 40.51 2.50
3 4 3.951037 CCCAATTCCAATCGACCATTGTA 59.049 43.478 0.00 0.00 40.51 2.41
4 5 2.760092 CCCAATTCCAATCGACCATTGT 59.240 45.455 0.00 0.00 40.51 2.71
5 6 3.023119 TCCCAATTCCAATCGACCATTG 58.977 45.455 0.00 0.00 41.64 2.82
6 7 3.380471 TCCCAATTCCAATCGACCATT 57.620 42.857 0.00 0.00 0.00 3.16
7 8 3.600448 ATCCCAATTCCAATCGACCAT 57.400 42.857 0.00 0.00 0.00 3.55
8 9 4.350816 AGATATCCCAATTCCAATCGACCA 59.649 41.667 0.00 0.00 0.00 4.02
9 10 4.697352 CAGATATCCCAATTCCAATCGACC 59.303 45.833 0.00 0.00 0.00 4.79
10 11 5.551233 TCAGATATCCCAATTCCAATCGAC 58.449 41.667 0.00 0.00 0.00 4.20
11 12 5.307976 ACTCAGATATCCCAATTCCAATCGA 59.692 40.000 0.00 0.00 0.00 3.59
12 13 5.410746 CACTCAGATATCCCAATTCCAATCG 59.589 44.000 0.00 0.00 0.00 3.34
13 14 5.709164 CCACTCAGATATCCCAATTCCAATC 59.291 44.000 0.00 0.00 0.00 2.67
14 15 5.373555 TCCACTCAGATATCCCAATTCCAAT 59.626 40.000 0.00 0.00 0.00 3.16
15 16 4.726317 TCCACTCAGATATCCCAATTCCAA 59.274 41.667 0.00 0.00 0.00 3.53
16 17 4.306391 TCCACTCAGATATCCCAATTCCA 58.694 43.478 0.00 0.00 0.00 3.53
17 18 4.982241 TCCACTCAGATATCCCAATTCC 57.018 45.455 0.00 0.00 0.00 3.01
18 19 9.606631 GTATATTCCACTCAGATATCCCAATTC 57.393 37.037 0.00 0.00 0.00 2.17
19 20 8.552296 GGTATATTCCACTCAGATATCCCAATT 58.448 37.037 0.00 0.00 0.00 2.32
20 21 7.147655 CGGTATATTCCACTCAGATATCCCAAT 60.148 40.741 0.00 0.00 0.00 3.16
21 22 6.154534 CGGTATATTCCACTCAGATATCCCAA 59.845 42.308 0.00 0.00 0.00 4.12
22 23 5.656859 CGGTATATTCCACTCAGATATCCCA 59.343 44.000 0.00 0.00 0.00 4.37
23 24 5.657302 ACGGTATATTCCACTCAGATATCCC 59.343 44.000 0.00 0.00 0.00 3.85
24 25 6.458478 CGACGGTATATTCCACTCAGATATCC 60.458 46.154 0.00 0.00 0.00 2.59
25 26 6.315642 TCGACGGTATATTCCACTCAGATATC 59.684 42.308 0.00 0.00 0.00 1.63
26 27 6.178324 TCGACGGTATATTCCACTCAGATAT 58.822 40.000 0.00 0.00 0.00 1.63
27 28 5.554070 TCGACGGTATATTCCACTCAGATA 58.446 41.667 0.00 0.00 0.00 1.98
28 29 4.395625 TCGACGGTATATTCCACTCAGAT 58.604 43.478 0.00 0.00 0.00 2.90
29 30 3.812262 TCGACGGTATATTCCACTCAGA 58.188 45.455 0.00 0.00 0.00 3.27
30 31 3.564644 ACTCGACGGTATATTCCACTCAG 59.435 47.826 0.00 0.00 0.00 3.35
31 32 3.314357 CACTCGACGGTATATTCCACTCA 59.686 47.826 0.00 0.00 0.00 3.41
32 33 3.304525 CCACTCGACGGTATATTCCACTC 60.305 52.174 0.00 0.00 0.00 3.51
33 34 2.621998 CCACTCGACGGTATATTCCACT 59.378 50.000 0.00 0.00 0.00 4.00
34 35 2.620115 TCCACTCGACGGTATATTCCAC 59.380 50.000 0.00 0.00 0.00 4.02
35 36 2.934887 TCCACTCGACGGTATATTCCA 58.065 47.619 0.00 0.00 0.00 3.53
36 37 3.119566 GGATCCACTCGACGGTATATTCC 60.120 52.174 6.95 0.00 0.00 3.01
37 38 3.504906 TGGATCCACTCGACGGTATATTC 59.495 47.826 11.44 0.00 0.00 1.75
38 39 3.493334 TGGATCCACTCGACGGTATATT 58.507 45.455 11.44 0.00 0.00 1.28
39 40 3.150458 TGGATCCACTCGACGGTATAT 57.850 47.619 11.44 0.00 0.00 0.86
40 41 2.643995 TGGATCCACTCGACGGTATA 57.356 50.000 11.44 0.00 0.00 1.47
41 42 1.996798 ATGGATCCACTCGACGGTAT 58.003 50.000 18.99 0.00 0.00 2.73
42 43 1.771565 AATGGATCCACTCGACGGTA 58.228 50.000 18.99 0.00 0.00 4.02
43 44 0.902531 AAATGGATCCACTCGACGGT 59.097 50.000 18.99 0.00 0.00 4.83
44 45 2.545952 CCTAAATGGATCCACTCGACGG 60.546 54.545 18.99 9.29 38.35 4.79
45 46 2.545952 CCCTAAATGGATCCACTCGACG 60.546 54.545 18.99 3.04 38.35 5.12
46 47 2.224305 CCCCTAAATGGATCCACTCGAC 60.224 54.545 18.99 0.00 38.35 4.20
47 48 2.047061 CCCCTAAATGGATCCACTCGA 58.953 52.381 18.99 1.70 38.35 4.04
48 49 1.768870 ACCCCTAAATGGATCCACTCG 59.231 52.381 18.99 5.89 38.35 4.18
49 50 3.053619 ACAACCCCTAAATGGATCCACTC 60.054 47.826 18.99 0.00 38.35 3.51
50 51 2.926329 ACAACCCCTAAATGGATCCACT 59.074 45.455 18.99 1.87 38.35 4.00
51 52 3.382083 ACAACCCCTAAATGGATCCAC 57.618 47.619 18.99 0.00 38.35 4.02
52 53 4.202727 TGAAACAACCCCTAAATGGATCCA 60.203 41.667 18.88 18.88 38.35 3.41
53 54 4.349365 TGAAACAACCCCTAAATGGATCC 58.651 43.478 4.20 4.20 38.35 3.36
54 55 5.993748 TTGAAACAACCCCTAAATGGATC 57.006 39.130 0.00 0.00 38.35 3.36
55 56 5.127031 CGATTGAAACAACCCCTAAATGGAT 59.873 40.000 0.00 0.00 38.35 3.41
56 57 4.461081 CGATTGAAACAACCCCTAAATGGA 59.539 41.667 0.00 0.00 38.35 3.41
57 58 4.381505 CCGATTGAAACAACCCCTAAATGG 60.382 45.833 0.00 0.00 0.00 3.16
58 59 4.219725 ACCGATTGAAACAACCCCTAAATG 59.780 41.667 0.00 0.00 0.00 2.32
59 60 4.412843 ACCGATTGAAACAACCCCTAAAT 58.587 39.130 0.00 0.00 0.00 1.40
60 61 3.834938 ACCGATTGAAACAACCCCTAAA 58.165 40.909 0.00 0.00 0.00 1.85
61 62 3.512219 ACCGATTGAAACAACCCCTAA 57.488 42.857 0.00 0.00 0.00 2.69
62 63 4.472108 AGATACCGATTGAAACAACCCCTA 59.528 41.667 0.00 0.00 0.00 3.53
63 64 3.265995 AGATACCGATTGAAACAACCCCT 59.734 43.478 0.00 0.00 0.00 4.79
64 65 3.617284 AGATACCGATTGAAACAACCCC 58.383 45.455 0.00 0.00 0.00 4.95
65 66 4.941873 AGAAGATACCGATTGAAACAACCC 59.058 41.667 0.00 0.00 0.00 4.11
66 67 5.411669 ACAGAAGATACCGATTGAAACAACC 59.588 40.000 0.00 0.00 0.00 3.77
67 68 6.481954 ACAGAAGATACCGATTGAAACAAC 57.518 37.500 0.00 0.00 0.00 3.32
68 69 6.072728 CCAACAGAAGATACCGATTGAAACAA 60.073 38.462 0.00 0.00 0.00 2.83
69 70 5.411361 CCAACAGAAGATACCGATTGAAACA 59.589 40.000 0.00 0.00 0.00 2.83
70 71 5.411669 ACCAACAGAAGATACCGATTGAAAC 59.588 40.000 0.00 0.00 0.00 2.78
71 72 5.556915 ACCAACAGAAGATACCGATTGAAA 58.443 37.500 0.00 0.00 0.00 2.69
72 73 5.046591 AGACCAACAGAAGATACCGATTGAA 60.047 40.000 0.00 0.00 0.00 2.69
73 74 4.466370 AGACCAACAGAAGATACCGATTGA 59.534 41.667 0.00 0.00 0.00 2.57
74 75 4.759782 AGACCAACAGAAGATACCGATTG 58.240 43.478 0.00 0.00 0.00 2.67
75 76 5.422214 AAGACCAACAGAAGATACCGATT 57.578 39.130 0.00 0.00 0.00 3.34
76 77 5.046591 TCAAAGACCAACAGAAGATACCGAT 60.047 40.000 0.00 0.00 0.00 4.18
77 78 4.282449 TCAAAGACCAACAGAAGATACCGA 59.718 41.667 0.00 0.00 0.00 4.69
78 79 4.566004 TCAAAGACCAACAGAAGATACCG 58.434 43.478 0.00 0.00 0.00 4.02
79 80 6.431234 ACATTCAAAGACCAACAGAAGATACC 59.569 38.462 0.00 0.00 0.00 2.73
80 81 7.389053 AGACATTCAAAGACCAACAGAAGATAC 59.611 37.037 0.00 0.00 0.00 2.24
81 82 7.453393 AGACATTCAAAGACCAACAGAAGATA 58.547 34.615 0.00 0.00 0.00 1.98
82 83 6.302269 AGACATTCAAAGACCAACAGAAGAT 58.698 36.000 0.00 0.00 0.00 2.40
83 84 5.684704 AGACATTCAAAGACCAACAGAAGA 58.315 37.500 0.00 0.00 0.00 2.87
84 85 6.382869 AAGACATTCAAAGACCAACAGAAG 57.617 37.500 0.00 0.00 0.00 2.85
85 86 6.376864 TCAAAGACATTCAAAGACCAACAGAA 59.623 34.615 0.00 0.00 0.00 3.02
86 87 5.885352 TCAAAGACATTCAAAGACCAACAGA 59.115 36.000 0.00 0.00 0.00 3.41
87 88 5.973565 GTCAAAGACATTCAAAGACCAACAG 59.026 40.000 0.00 0.00 32.09 3.16
88 89 5.652014 AGTCAAAGACATTCAAAGACCAACA 59.348 36.000 0.00 0.00 34.60 3.33
89 90 6.038714 AGAGTCAAAGACATTCAAAGACCAAC 59.961 38.462 0.00 0.00 34.60 3.77
90 91 6.122277 AGAGTCAAAGACATTCAAAGACCAA 58.878 36.000 0.00 0.00 34.60 3.67
91 92 5.684704 AGAGTCAAAGACATTCAAAGACCA 58.315 37.500 0.00 0.00 34.60 4.02
92 93 6.370166 CCTAGAGTCAAAGACATTCAAAGACC 59.630 42.308 0.00 0.00 34.60 3.85
93 94 6.370166 CCCTAGAGTCAAAGACATTCAAAGAC 59.630 42.308 0.00 0.00 34.60 3.01
94 95 6.043243 ACCCTAGAGTCAAAGACATTCAAAGA 59.957 38.462 0.00 0.00 34.60 2.52
95 96 6.234177 ACCCTAGAGTCAAAGACATTCAAAG 58.766 40.000 0.00 0.00 34.60 2.77
96 97 6.187727 ACCCTAGAGTCAAAGACATTCAAA 57.812 37.500 0.00 0.00 34.60 2.69
97 98 5.825593 ACCCTAGAGTCAAAGACATTCAA 57.174 39.130 0.00 0.00 34.60 2.69
98 99 6.017192 ACTACCCTAGAGTCAAAGACATTCA 58.983 40.000 0.00 0.00 34.60 2.57
99 100 6.334202 CACTACCCTAGAGTCAAAGACATTC 58.666 44.000 0.00 0.00 34.60 2.67
100 101 5.187967 CCACTACCCTAGAGTCAAAGACATT 59.812 44.000 0.00 0.00 34.60 2.71
101 102 4.712337 CCACTACCCTAGAGTCAAAGACAT 59.288 45.833 0.00 0.00 34.60 3.06
102 103 4.087182 CCACTACCCTAGAGTCAAAGACA 58.913 47.826 0.00 0.00 34.60 3.41
103 104 3.119065 GCCACTACCCTAGAGTCAAAGAC 60.119 52.174 0.00 0.00 0.00 3.01
104 105 3.097614 GCCACTACCCTAGAGTCAAAGA 58.902 50.000 0.00 0.00 0.00 2.52
105 106 2.168728 GGCCACTACCCTAGAGTCAAAG 59.831 54.545 0.00 0.00 0.00 2.77
106 107 2.185387 GGCCACTACCCTAGAGTCAAA 58.815 52.381 0.00 0.00 0.00 2.69
107 108 1.361543 AGGCCACTACCCTAGAGTCAA 59.638 52.381 5.01 0.00 0.00 3.18
108 109 1.008403 AGGCCACTACCCTAGAGTCA 58.992 55.000 5.01 0.00 0.00 3.41
109 110 1.757699 CAAGGCCACTACCCTAGAGTC 59.242 57.143 5.01 0.00 30.93 3.36
110 111 1.622725 CCAAGGCCACTACCCTAGAGT 60.623 57.143 5.01 0.00 30.93 3.24
111 112 1.123928 CCAAGGCCACTACCCTAGAG 58.876 60.000 5.01 0.00 30.93 2.43
112 113 0.714180 TCCAAGGCCACTACCCTAGA 59.286 55.000 5.01 0.00 30.93 2.43
113 114 1.807814 ATCCAAGGCCACTACCCTAG 58.192 55.000 5.01 0.00 30.93 3.02
114 115 2.427297 CCTATCCAAGGCCACTACCCTA 60.427 54.545 5.01 0.00 38.97 3.53
115 116 1.695989 CCTATCCAAGGCCACTACCCT 60.696 57.143 5.01 0.00 38.97 4.34
116 117 0.765510 CCTATCCAAGGCCACTACCC 59.234 60.000 5.01 0.00 38.97 3.69
117 118 0.765510 CCCTATCCAAGGCCACTACC 59.234 60.000 5.01 0.00 45.03 3.18
118 119 1.141053 CACCCTATCCAAGGCCACTAC 59.859 57.143 5.01 0.00 45.03 2.73
119 120 1.274184 ACACCCTATCCAAGGCCACTA 60.274 52.381 5.01 0.00 45.03 2.74
120 121 0.550147 ACACCCTATCCAAGGCCACT 60.550 55.000 5.01 0.00 45.03 4.00
121 122 0.107165 GACACCCTATCCAAGGCCAC 60.107 60.000 5.01 0.00 45.03 5.01
122 123 0.253160 AGACACCCTATCCAAGGCCA 60.253 55.000 5.01 0.00 45.03 5.36
123 124 1.694696 CTAGACACCCTATCCAAGGCC 59.305 57.143 0.00 0.00 45.03 5.19
124 125 1.694696 CCTAGACACCCTATCCAAGGC 59.305 57.143 0.00 0.00 45.03 4.35
125 126 2.966516 GTCCTAGACACCCTATCCAAGG 59.033 54.545 0.00 0.00 37.54 3.61
126 127 3.639094 CTGTCCTAGACACCCTATCCAAG 59.361 52.174 0.00 0.00 37.67 3.61
127 128 3.630054 CCTGTCCTAGACACCCTATCCAA 60.630 52.174 0.00 0.00 37.67 3.53
128 129 2.091278 CCTGTCCTAGACACCCTATCCA 60.091 54.545 0.00 0.00 37.67 3.41
129 130 2.599677 CCTGTCCTAGACACCCTATCC 58.400 57.143 0.00 0.00 37.67 2.59
130 131 1.964933 GCCTGTCCTAGACACCCTATC 59.035 57.143 0.00 0.00 37.67 2.08
131 132 1.413227 GGCCTGTCCTAGACACCCTAT 60.413 57.143 0.00 0.00 37.67 2.57
132 133 0.032416 GGCCTGTCCTAGACACCCTA 60.032 60.000 0.00 0.00 37.67 3.53
133 134 1.306226 GGCCTGTCCTAGACACCCT 60.306 63.158 0.00 0.00 37.67 4.34
134 135 0.032416 TAGGCCTGTCCTAGACACCC 60.032 60.000 17.99 0.00 45.41 4.61
135 136 3.609798 TAGGCCTGTCCTAGACACC 57.390 57.895 17.99 0.00 45.41 4.16
141 142 1.016415 AGGGTCTTAGGCCTGTCCTA 58.984 55.000 17.99 0.00 45.41 2.94
143 144 1.121378 GTAGGGTCTTAGGCCTGTCC 58.879 60.000 17.99 11.89 0.00 4.02
144 145 1.121378 GGTAGGGTCTTAGGCCTGTC 58.879 60.000 17.99 2.49 0.00 3.51
145 146 0.326332 GGGTAGGGTCTTAGGCCTGT 60.326 60.000 17.99 0.00 0.00 4.00
146 147 0.031010 AGGGTAGGGTCTTAGGCCTG 60.031 60.000 17.99 0.00 0.00 4.85
147 148 1.504221 CTAGGGTAGGGTCTTAGGCCT 59.496 57.143 11.78 11.78 0.00 5.19
148 149 1.482741 CCTAGGGTAGGGTCTTAGGCC 60.483 61.905 0.00 0.00 42.42 5.19
149 150 2.012565 CCTAGGGTAGGGTCTTAGGC 57.987 60.000 0.00 0.00 42.42 3.93
159 160 5.766670 TGACGATAACATGTACCTAGGGTAG 59.233 44.000 14.81 0.52 39.02 3.18
160 161 5.693961 TGACGATAACATGTACCTAGGGTA 58.306 41.667 14.81 0.12 37.09 3.69
161 162 4.539726 TGACGATAACATGTACCTAGGGT 58.460 43.478 14.81 0.00 40.16 4.34
162 163 4.825634 TCTGACGATAACATGTACCTAGGG 59.174 45.833 14.81 0.00 0.00 3.53
163 164 5.560375 CGTCTGACGATAACATGTACCTAGG 60.560 48.000 24.86 7.41 46.05 3.02
164 165 5.441543 CGTCTGACGATAACATGTACCTAG 58.558 45.833 24.86 0.00 46.05 3.02
165 166 4.274214 CCGTCTGACGATAACATGTACCTA 59.726 45.833 29.93 0.00 46.05 3.08
166 167 3.066342 CCGTCTGACGATAACATGTACCT 59.934 47.826 29.93 0.00 46.05 3.08
167 168 3.369385 CCGTCTGACGATAACATGTACC 58.631 50.000 29.93 0.00 46.05 3.34
168 169 2.787680 GCCGTCTGACGATAACATGTAC 59.212 50.000 29.93 3.93 46.05 2.90
169 170 2.540157 CGCCGTCTGACGATAACATGTA 60.540 50.000 29.93 0.00 46.05 2.29
170 171 1.797713 CGCCGTCTGACGATAACATGT 60.798 52.381 29.93 0.00 46.05 3.21
171 172 0.846401 CGCCGTCTGACGATAACATG 59.154 55.000 29.93 13.10 46.05 3.21
172 173 0.248907 CCGCCGTCTGACGATAACAT 60.249 55.000 29.93 0.00 46.05 2.71
173 174 1.138036 CCGCCGTCTGACGATAACA 59.862 57.895 29.93 0.00 46.05 2.41
174 175 1.138047 CACCGCCGTCTGACGATAAC 61.138 60.000 29.93 15.22 46.05 1.89
175 176 1.138036 CACCGCCGTCTGACGATAA 59.862 57.895 29.93 0.00 46.05 1.75
176 177 2.767445 CCACCGCCGTCTGACGATA 61.767 63.158 29.93 0.00 46.05 2.92
177 178 4.129737 CCACCGCCGTCTGACGAT 62.130 66.667 29.93 10.59 46.05 3.73
189 190 3.649277 CTCCTCCTTCACGCCACCG 62.649 68.421 0.00 0.00 41.14 4.94
190 191 2.266055 CTCCTCCTTCACGCCACC 59.734 66.667 0.00 0.00 0.00 4.61
191 192 1.827399 TTCCTCCTCCTTCACGCCAC 61.827 60.000 0.00 0.00 0.00 5.01
192 193 1.535444 TTCCTCCTCCTTCACGCCA 60.535 57.895 0.00 0.00 0.00 5.69
193 194 1.219393 CTTCCTCCTCCTTCACGCC 59.781 63.158 0.00 0.00 0.00 5.68
194 195 0.108567 GTCTTCCTCCTCCTTCACGC 60.109 60.000 0.00 0.00 0.00 5.34
195 196 0.171455 CGTCTTCCTCCTCCTTCACG 59.829 60.000 0.00 0.00 0.00 4.35
196 197 1.202817 GTCGTCTTCCTCCTCCTTCAC 59.797 57.143 0.00 0.00 0.00 3.18
197 198 1.546961 GTCGTCTTCCTCCTCCTTCA 58.453 55.000 0.00 0.00 0.00 3.02
198 199 0.452585 CGTCGTCTTCCTCCTCCTTC 59.547 60.000 0.00 0.00 0.00 3.46
199 200 0.037877 TCGTCGTCTTCCTCCTCCTT 59.962 55.000 0.00 0.00 0.00 3.36
200 201 0.677414 GTCGTCGTCTTCCTCCTCCT 60.677 60.000 0.00 0.00 0.00 3.69
201 202 1.801983 GTCGTCGTCTTCCTCCTCC 59.198 63.158 0.00 0.00 0.00 4.30
202 203 1.424635 CGTCGTCGTCTTCCTCCTC 59.575 63.158 0.00 0.00 0.00 3.71
203 204 2.039405 CCGTCGTCGTCTTCCTCCT 61.039 63.158 0.71 0.00 35.01 3.69
204 205 2.484203 CCGTCGTCGTCTTCCTCC 59.516 66.667 0.71 0.00 35.01 4.30
205 206 2.202453 GCCGTCGTCGTCTTCCTC 60.202 66.667 0.71 0.00 35.01 3.71
206 207 4.099170 CGCCGTCGTCGTCTTCCT 62.099 66.667 0.71 0.00 35.01 3.36
225 226 2.161486 GCAGAAGGCGCTGTAGTCG 61.161 63.158 7.64 0.00 38.17 4.18
226 227 3.787458 GCAGAAGGCGCTGTAGTC 58.213 61.111 7.64 0.00 38.17 2.59
235 236 1.401199 GCTGAAGATCTTGCAGAAGGC 59.599 52.381 26.02 14.89 45.13 4.35
236 237 1.664659 CGCTGAAGATCTTGCAGAAGG 59.335 52.381 26.02 15.93 0.00 3.46
237 238 2.093941 CACGCTGAAGATCTTGCAGAAG 59.906 50.000 26.02 21.65 0.00 2.85
238 239 2.071540 CACGCTGAAGATCTTGCAGAA 58.928 47.619 26.02 5.57 0.00 3.02
239 240 1.001293 ACACGCTGAAGATCTTGCAGA 59.999 47.619 26.02 6.16 0.00 4.26
240 241 1.436600 ACACGCTGAAGATCTTGCAG 58.563 50.000 14.00 18.79 0.00 4.41
241 242 2.610433 CTACACGCTGAAGATCTTGCA 58.390 47.619 14.00 9.73 0.00 4.08
242 243 1.929836 CCTACACGCTGAAGATCTTGC 59.070 52.381 14.00 10.20 0.00 4.01
243 244 1.929836 GCCTACACGCTGAAGATCTTG 59.070 52.381 14.00 0.00 0.00 3.02
244 245 1.134670 GGCCTACACGCTGAAGATCTT 60.135 52.381 7.95 7.95 0.00 2.40
245 246 0.461961 GGCCTACACGCTGAAGATCT 59.538 55.000 0.00 0.00 0.00 2.75
246 247 0.872021 CGGCCTACACGCTGAAGATC 60.872 60.000 0.00 0.00 37.30 2.75
247 248 1.141881 CGGCCTACACGCTGAAGAT 59.858 57.895 0.00 0.00 37.30 2.40
248 249 1.529152 TTCGGCCTACACGCTGAAGA 61.529 55.000 0.00 0.00 46.65 2.87
249 250 1.080093 TTCGGCCTACACGCTGAAG 60.080 57.895 0.00 0.00 46.65 3.02
251 252 2.571757 CTTCGGCCTACACGCTGA 59.428 61.111 0.00 0.00 42.42 4.26
252 253 2.509336 CCTTCGGCCTACACGCTG 60.509 66.667 0.00 0.00 36.40 5.18
253 254 4.452733 GCCTTCGGCCTACACGCT 62.453 66.667 0.00 0.00 44.06 5.07
284 285 4.530857 AGACTATGCCGCCGCCAC 62.531 66.667 0.00 0.00 0.00 5.01
285 286 3.323758 AAAGACTATGCCGCCGCCA 62.324 57.895 0.00 0.00 0.00 5.69
286 287 2.513897 AAAGACTATGCCGCCGCC 60.514 61.111 0.00 0.00 0.00 6.13
287 288 2.709475 CAAAGACTATGCCGCCGC 59.291 61.111 0.00 0.00 0.00 6.53
288 289 1.369091 AAGCAAAGACTATGCCGCCG 61.369 55.000 0.00 0.00 44.91 6.46
289 290 0.811281 AAAGCAAAGACTATGCCGCC 59.189 50.000 0.00 0.00 44.91 6.13
290 291 2.636768 AAAAGCAAAGACTATGCCGC 57.363 45.000 0.00 0.00 44.91 6.53
326 327 9.730420 GGCGTTCTATTGATTTTTGTACATATT 57.270 29.630 0.00 0.00 0.00 1.28
327 328 9.120538 AGGCGTTCTATTGATTTTTGTACATAT 57.879 29.630 0.00 0.00 0.00 1.78
328 329 8.500753 AGGCGTTCTATTGATTTTTGTACATA 57.499 30.769 0.00 0.00 0.00 2.29
329 330 7.391148 AGGCGTTCTATTGATTTTTGTACAT 57.609 32.000 0.00 0.00 0.00 2.29
330 331 6.811253 AGGCGTTCTATTGATTTTTGTACA 57.189 33.333 0.00 0.00 0.00 2.90
331 332 9.274065 CTTTAGGCGTTCTATTGATTTTTGTAC 57.726 33.333 0.00 0.00 0.00 2.90
332 333 9.005777 ACTTTAGGCGTTCTATTGATTTTTGTA 57.994 29.630 0.00 0.00 0.00 2.41
333 334 7.882179 ACTTTAGGCGTTCTATTGATTTTTGT 58.118 30.769 0.00 0.00 0.00 2.83
334 335 8.742554 AACTTTAGGCGTTCTATTGATTTTTG 57.257 30.769 0.00 0.00 0.00 2.44
335 336 9.191995 CAAACTTTAGGCGTTCTATTGATTTTT 57.808 29.630 0.00 0.00 0.00 1.94
336 337 7.328493 GCAAACTTTAGGCGTTCTATTGATTTT 59.672 33.333 0.00 0.00 0.00 1.82
337 338 6.806739 GCAAACTTTAGGCGTTCTATTGATTT 59.193 34.615 0.00 0.00 0.00 2.17
338 339 6.322491 GCAAACTTTAGGCGTTCTATTGATT 58.678 36.000 0.00 0.00 0.00 2.57
339 340 5.163652 GGCAAACTTTAGGCGTTCTATTGAT 60.164 40.000 0.00 0.00 0.00 2.57
340 341 4.155280 GGCAAACTTTAGGCGTTCTATTGA 59.845 41.667 0.00 0.00 0.00 2.57
341 342 4.412207 GGCAAACTTTAGGCGTTCTATTG 58.588 43.478 0.00 0.00 0.00 1.90
342 343 3.442625 GGGCAAACTTTAGGCGTTCTATT 59.557 43.478 0.00 0.00 0.00 1.73
343 344 3.014623 GGGCAAACTTTAGGCGTTCTAT 58.985 45.455 0.00 0.00 0.00 1.98
344 345 2.224572 TGGGCAAACTTTAGGCGTTCTA 60.225 45.455 0.00 0.00 0.00 2.10
345 346 1.244816 GGGCAAACTTTAGGCGTTCT 58.755 50.000 0.00 0.00 0.00 3.01
346 347 0.955905 TGGGCAAACTTTAGGCGTTC 59.044 50.000 0.00 0.00 0.00 3.95
347 348 1.404843 TTGGGCAAACTTTAGGCGTT 58.595 45.000 0.00 0.00 0.00 4.84
348 349 1.627864 ATTGGGCAAACTTTAGGCGT 58.372 45.000 0.00 0.00 0.00 5.68
349 350 2.231235 AGAATTGGGCAAACTTTAGGCG 59.769 45.455 0.00 0.00 0.00 5.52
350 351 3.006859 ACAGAATTGGGCAAACTTTAGGC 59.993 43.478 0.00 0.00 0.00 3.93
351 352 4.039124 ACACAGAATTGGGCAAACTTTAGG 59.961 41.667 0.00 0.00 0.00 2.69
352 353 5.200368 ACACAGAATTGGGCAAACTTTAG 57.800 39.130 0.00 0.00 0.00 1.85
353 354 4.261405 CGACACAGAATTGGGCAAACTTTA 60.261 41.667 0.00 0.00 0.00 1.85
354 355 3.490761 CGACACAGAATTGGGCAAACTTT 60.491 43.478 0.00 0.00 0.00 2.66
355 356 2.034558 CGACACAGAATTGGGCAAACTT 59.965 45.455 0.00 0.00 0.00 2.66
356 357 1.608590 CGACACAGAATTGGGCAAACT 59.391 47.619 0.00 0.00 0.00 2.66
357 358 1.930371 GCGACACAGAATTGGGCAAAC 60.930 52.381 0.00 0.00 0.00 2.93
358 359 0.313672 GCGACACAGAATTGGGCAAA 59.686 50.000 0.00 0.00 0.00 3.68
359 360 1.851021 CGCGACACAGAATTGGGCAA 61.851 55.000 0.00 0.00 0.00 4.52
360 361 2.324330 CGCGACACAGAATTGGGCA 61.324 57.895 0.00 0.00 0.00 5.36
361 362 1.852067 AACGCGACACAGAATTGGGC 61.852 55.000 15.93 0.00 0.00 5.36
362 363 0.591170 AAACGCGACACAGAATTGGG 59.409 50.000 15.93 0.00 0.00 4.12
363 364 1.662876 CCAAACGCGACACAGAATTGG 60.663 52.381 15.93 9.82 0.00 3.16
364 365 1.673760 CCAAACGCGACACAGAATTG 58.326 50.000 15.93 4.57 0.00 2.32
365 366 0.040425 GCCAAACGCGACACAGAATT 60.040 50.000 15.93 0.00 0.00 2.17
366 367 1.574428 GCCAAACGCGACACAGAAT 59.426 52.632 15.93 0.00 0.00 2.40
367 368 2.539338 GGCCAAACGCGACACAGAA 61.539 57.895 15.93 0.00 38.94 3.02
368 369 2.970324 GGCCAAACGCGACACAGA 60.970 61.111 15.93 0.00 38.94 3.41
369 370 4.368808 CGGCCAAACGCGACACAG 62.369 66.667 15.93 0.00 38.94 3.66
370 371 4.893601 TCGGCCAAACGCGACACA 62.894 61.111 15.93 0.00 38.94 3.72
371 372 2.452366 AATTCGGCCAAACGCGACAC 62.452 55.000 15.93 0.00 38.94 3.67
372 373 1.787057 AAATTCGGCCAAACGCGACA 61.787 50.000 15.93 0.00 38.94 4.35
373 374 0.662077 AAAATTCGGCCAAACGCGAC 60.662 50.000 15.93 0.00 38.94 5.19
374 375 0.661780 CAAAATTCGGCCAAACGCGA 60.662 50.000 15.93 0.00 38.94 5.87
375 376 1.613347 CCAAAATTCGGCCAAACGCG 61.613 55.000 3.53 3.53 38.94 6.01
376 377 1.896339 GCCAAAATTCGGCCAAACGC 61.896 55.000 2.24 0.00 44.22 4.84
377 378 2.149555 GCCAAAATTCGGCCAAACG 58.850 52.632 2.24 0.00 44.22 3.60
384 385 3.163630 CCATACTTGGCCAAAATTCGG 57.836 47.619 20.91 12.44 35.85 4.30
396 397 4.977347 ACGCCGTTTTTAAAACCATACTTG 59.023 37.500 14.00 0.00 0.00 3.16
397 398 5.008911 AGACGCCGTTTTTAAAACCATACTT 59.991 36.000 14.00 0.00 0.00 2.24
398 399 4.516321 AGACGCCGTTTTTAAAACCATACT 59.484 37.500 14.00 5.80 0.00 2.12
399 400 4.613866 CAGACGCCGTTTTTAAAACCATAC 59.386 41.667 14.00 0.00 0.00 2.39
400 401 4.320348 CCAGACGCCGTTTTTAAAACCATA 60.320 41.667 14.00 0.00 0.00 2.74
401 402 3.551250 CCAGACGCCGTTTTTAAAACCAT 60.551 43.478 14.00 0.00 0.00 3.55
402 403 2.223525 CCAGACGCCGTTTTTAAAACCA 60.224 45.455 14.00 0.00 0.00 3.67
403 404 2.387185 CCAGACGCCGTTTTTAAAACC 58.613 47.619 14.00 1.59 0.00 3.27
404 405 2.387185 CCCAGACGCCGTTTTTAAAAC 58.613 47.619 10.24 10.24 0.00 2.43
405 406 1.337387 CCCCAGACGCCGTTTTTAAAA 59.663 47.619 0.00 0.00 0.00 1.52
406 407 0.953003 CCCCAGACGCCGTTTTTAAA 59.047 50.000 0.00 0.00 0.00 1.52
407 408 0.179023 ACCCCAGACGCCGTTTTTAA 60.179 50.000 0.00 0.00 0.00 1.52
408 409 0.885596 CACCCCAGACGCCGTTTTTA 60.886 55.000 0.00 0.00 0.00 1.52
409 410 2.190841 CACCCCAGACGCCGTTTTT 61.191 57.895 0.00 0.00 0.00 1.94
410 411 2.406002 ATCACCCCAGACGCCGTTTT 62.406 55.000 0.00 0.00 0.00 2.43
411 412 2.798148 GATCACCCCAGACGCCGTTT 62.798 60.000 0.00 0.00 0.00 3.60
412 413 3.310860 GATCACCCCAGACGCCGTT 62.311 63.158 0.00 0.00 0.00 4.44
413 414 3.771160 GATCACCCCAGACGCCGT 61.771 66.667 0.00 0.00 0.00 5.68
414 415 1.672854 TAAGATCACCCCAGACGCCG 61.673 60.000 0.00 0.00 0.00 6.46
415 416 0.105039 CTAAGATCACCCCAGACGCC 59.895 60.000 0.00 0.00 0.00 5.68
416 417 3.669354 CTAAGATCACCCCAGACGC 57.331 57.895 0.00 0.00 0.00 5.19
689 690 1.828832 CGTCGGTTACTCAGAGCATC 58.171 55.000 0.00 0.00 0.00 3.91
690 691 0.179134 GCGTCGGTTACTCAGAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
691 692 1.211969 GCGTCGGTTACTCAGAGCA 59.788 57.895 0.00 0.00 0.00 4.26
692 693 1.516603 GGCGTCGGTTACTCAGAGC 60.517 63.158 0.00 0.00 0.00 4.09
693 694 1.139095 GGGCGTCGGTTACTCAGAG 59.861 63.158 0.00 0.00 0.00 3.35
694 695 1.592400 CTGGGCGTCGGTTACTCAGA 61.592 60.000 0.00 0.00 0.00 3.27
695 696 1.153823 CTGGGCGTCGGTTACTCAG 60.154 63.158 0.00 0.00 0.00 3.35
696 697 2.967397 CTGGGCGTCGGTTACTCA 59.033 61.111 0.00 0.00 0.00 3.41
697 698 2.508663 GCTGGGCGTCGGTTACTC 60.509 66.667 0.00 0.00 0.00 2.59
698 699 3.296709 CTGCTGGGCGTCGGTTACT 62.297 63.158 0.00 0.00 0.00 2.24
699 700 2.216750 TACTGCTGGGCGTCGGTTAC 62.217 60.000 0.00 0.00 0.00 2.50
700 701 1.978080 TACTGCTGGGCGTCGGTTA 60.978 57.895 0.00 0.00 0.00 2.85
701 702 3.307906 TACTGCTGGGCGTCGGTT 61.308 61.111 0.00 0.00 0.00 4.44
702 703 4.065281 GTACTGCTGGGCGTCGGT 62.065 66.667 0.00 0.00 0.00 4.69
703 704 4.063967 TGTACTGCTGGGCGTCGG 62.064 66.667 0.00 0.00 0.00 4.79
704 705 2.809601 GTGTACTGCTGGGCGTCG 60.810 66.667 0.00 0.00 0.00 5.12
705 706 2.809601 CGTGTACTGCTGGGCGTC 60.810 66.667 0.00 0.00 0.00 5.19
706 707 3.612681 ACGTGTACTGCTGGGCGT 61.613 61.111 0.00 0.00 0.00 5.68
707 708 3.112075 CACGTGTACTGCTGGGCG 61.112 66.667 7.58 0.00 0.00 6.13
708 709 2.742372 CCACGTGTACTGCTGGGC 60.742 66.667 15.65 0.00 0.00 5.36
709 710 2.047274 CCCACGTGTACTGCTGGG 60.047 66.667 15.65 1.43 37.61 4.45
710 711 1.899437 ATCCCCACGTGTACTGCTGG 61.899 60.000 15.65 6.29 0.00 4.85
711 712 0.460284 GATCCCCACGTGTACTGCTG 60.460 60.000 15.65 0.00 0.00 4.41
712 713 1.614241 GGATCCCCACGTGTACTGCT 61.614 60.000 15.65 0.00 0.00 4.24
713 714 1.153429 GGATCCCCACGTGTACTGC 60.153 63.158 15.65 0.57 0.00 4.40
714 715 0.611200 TTGGATCCCCACGTGTACTG 59.389 55.000 15.65 0.00 43.41 2.74
715 716 0.902531 CTTGGATCCCCACGTGTACT 59.097 55.000 15.65 0.00 43.41 2.73
716 717 0.611714 ACTTGGATCCCCACGTGTAC 59.388 55.000 15.65 0.00 42.55 2.90
717 718 3.076350 ACTTGGATCCCCACGTGTA 57.924 52.632 15.65 0.00 42.55 2.90
729 730 1.150536 GGGTTGTCAGGCACTTGGA 59.849 57.895 0.00 0.00 34.60 3.53
730 731 0.754957 TTGGGTTGTCAGGCACTTGG 60.755 55.000 0.00 0.00 34.60 3.61
915 955 3.779738 AGCTTCCTTTTAGAGCAGGATCT 59.220 43.478 0.00 0.00 39.05 2.75
916 956 4.149511 AGCTTCCTTTTAGAGCAGGATC 57.850 45.455 0.00 0.00 39.05 3.36
1004 1215 3.450457 AGGAAGAAGAGGACAGCTGTATG 59.550 47.826 21.73 0.00 0.00 2.39
1008 1241 2.673610 CGAAGGAAGAAGAGGACAGCTG 60.674 54.545 13.48 13.48 0.00 4.24
1009 1242 1.548269 CGAAGGAAGAAGAGGACAGCT 59.452 52.381 0.00 0.00 0.00 4.24
1012 1245 1.000955 GCACGAAGGAAGAAGAGGACA 59.999 52.381 0.00 0.00 0.00 4.02
1144 1438 0.169230 CTCTTGAGCTCGTACACGCT 59.831 55.000 9.64 5.66 39.61 5.07
1263 1557 7.832503 ACAAGATCTTTTGTCCTTGTTTTTG 57.167 32.000 4.86 0.00 44.57 2.44
1310 1636 3.525537 CAAGATCACACATAAGAGGCGT 58.474 45.455 0.00 0.00 0.00 5.68
1346 1672 1.813178 TGCGAGGTAAGTGAGTCTCAG 59.187 52.381 1.75 0.00 0.00 3.35
1582 2884 1.227973 GGGCCGATCTTTGCTAGGG 60.228 63.158 0.00 0.00 0.00 3.53
1609 2911 4.019501 AGCAATGAAGTTGAGAGATCAGGT 60.020 41.667 0.00 0.00 40.37 4.00
1692 3029 3.142174 GACCAGAGGAAACAGGAACTTG 58.858 50.000 0.00 0.00 34.60 3.16
1698 3035 3.008375 TCTGAATGACCAGAGGAAACAGG 59.992 47.826 0.00 0.00 38.18 4.00
1919 3290 1.425066 ACTTTGCTGAATCCCCTGTGA 59.575 47.619 0.00 0.00 0.00 3.58
2462 3860 3.089874 CTTCCGCATCCCCTCCCA 61.090 66.667 0.00 0.00 0.00 4.37
2545 3958 1.004918 GTTGCCGGTGTAGAGCTGT 60.005 57.895 1.90 0.00 0.00 4.40
2741 4157 8.904834 CATAGCTAGAAGGAGAACTGTTACTAA 58.095 37.037 0.00 0.00 0.00 2.24
2795 4215 1.742831 GCGGTGCTCATTAACCAATGA 59.257 47.619 0.56 0.56 46.56 2.57
2849 4270 3.386237 GACGGCTGGGAGCAGACT 61.386 66.667 2.62 0.00 44.75 3.24
2874 4295 1.425412 GATCTAACGGTGTTGCACGT 58.575 50.000 0.00 0.00 46.48 4.49
2875 4296 0.719465 GGATCTAACGGTGTTGCACG 59.281 55.000 0.00 0.00 34.83 5.34
3185 4609 1.000019 AGCTGCATCCATGGCACTT 60.000 52.632 6.96 0.00 36.11 3.16
3213 4637 4.952071 TTTTTGCTGGAACCAATCATCA 57.048 36.364 0.00 0.00 0.00 3.07
3453 4879 6.493115 TGTGTTTTTCCTACATCCATTCATGT 59.507 34.615 0.00 0.00 40.28 3.21
3469 4895 4.053295 TGCTACTACCGTCTGTGTTTTTC 58.947 43.478 0.00 0.00 0.00 2.29
3496 4922 3.963383 AAAAGCTACAACCGTGTCAAG 57.037 42.857 0.00 0.00 39.30 3.02
3526 4953 2.092914 CGTAGAGGGGAAAGGCTTCAAT 60.093 50.000 0.00 0.00 32.75 2.57
3656 5087 6.963049 AAGCTACAACCGTCTATGTAAAAG 57.037 37.500 0.00 0.00 32.05 2.27
3662 5095 4.113354 GAGGAAAGCTACAACCGTCTATG 58.887 47.826 0.00 0.00 0.00 2.23
3705 5138 9.998106 AATGCTTCAACCGTATATATAGAAAGT 57.002 29.630 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.