Multiple sequence alignment - TraesCS2A01G343400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G343400 chr2A 100.000 3519 0 0 1 3519 580280228 580283746 0.000000e+00 6499.0
1 TraesCS2A01G343400 chr2A 87.482 679 77 4 1850 2520 580253337 580254015 0.000000e+00 776.0
2 TraesCS2A01G343400 chr2A 87.597 645 80 0 1877 2521 580324425 580325069 0.000000e+00 749.0
3 TraesCS2A01G343400 chr2A 77.376 663 110 28 1892 2524 580384921 580385573 1.200000e-94 357.0
4 TraesCS2A01G343400 chr2A 93.548 155 10 0 2749 2903 1506990 1506836 7.600000e-57 231.0
5 TraesCS2A01G343400 chr2A 86.034 179 23 2 1010 1187 580252137 580252314 1.290000e-44 191.0
6 TraesCS2A01G343400 chr2D 93.904 2756 110 26 1 2712 413272611 413275352 0.000000e+00 4106.0
7 TraesCS2A01G343400 chr2D 88.365 679 71 4 1850 2520 413265144 413265822 0.000000e+00 809.0
8 TraesCS2A01G343400 chr2D 87.156 654 75 3 1877 2521 413290559 413291212 0.000000e+00 734.0
9 TraesCS2A01G343400 chr2D 76.970 660 114 26 1894 2524 413353539 413354189 3.360000e-90 342.0
10 TraesCS2A01G343400 chr2D 92.340 235 15 3 2913 3145 413275361 413275594 7.280000e-87 331.0
11 TraesCS2A01G343400 chr2D 93.085 188 9 2 3147 3330 413275628 413275815 4.480000e-69 272.0
12 TraesCS2A01G343400 chr2D 86.034 179 23 2 1010 1187 413263979 413264156 1.290000e-44 191.0
13 TraesCS2A01G343400 chr2B 90.938 1567 89 15 625 2149 486741124 486742679 0.000000e+00 2058.0
14 TraesCS2A01G343400 chr2B 87.334 679 78 4 1850 2520 486588766 486589444 0.000000e+00 771.0
15 TraesCS2A01G343400 chr2B 87.443 661 72 4 1877 2527 486770881 486771540 0.000000e+00 750.0
16 TraesCS2A01G343400 chr2B 92.039 515 29 5 128 640 486735232 486735736 0.000000e+00 713.0
17 TraesCS2A01G343400 chr2B 94.253 174 7 2 2913 3083 486742691 486742864 2.690000e-66 263.0
18 TraesCS2A01G343400 chr2B 83.550 231 29 6 1010 1233 486584936 486585164 1.280000e-49 207.0
19 TraesCS2A01G343400 chr2B 91.579 95 7 1 35 128 486733290 486733384 2.850000e-26 130.0
20 TraesCS2A01G343400 chr7A 97.396 192 5 0 3328 3519 517080742 517080933 9.420000e-86 327.0
21 TraesCS2A01G343400 chr7A 96.859 191 6 0 3329 3519 14611698 14611888 1.580000e-83 320.0
22 TraesCS2A01G343400 chr4A 97.396 192 5 0 3328 3519 526681189 526680998 9.420000e-86 327.0
23 TraesCS2A01G343400 chr4A 97.382 191 5 0 3329 3519 45864746 45864556 3.390000e-85 326.0
24 TraesCS2A01G343400 chr3A 97.382 191 5 0 3329 3519 129969167 129969357 3.390000e-85 326.0
25 TraesCS2A01G343400 chr3A 96.410 195 7 0 3325 3519 629095585 629095391 4.380000e-84 322.0
26 TraesCS2A01G343400 chr3A 95.364 151 5 2 2749 2898 669555965 669555816 4.540000e-59 239.0
27 TraesCS2A01G343400 chr3A 94.737 152 8 0 2749 2900 532344545 532344696 1.630000e-58 237.0
28 TraesCS2A01G343400 chr3A 94.667 150 8 0 2749 2898 212152 212301 2.110000e-57 233.0
29 TraesCS2A01G343400 chr5A 96.875 192 6 0 3328 3519 702447494 702447303 4.380000e-84 322.0
30 TraesCS2A01G343400 chr5A 96.622 148 5 0 2749 2896 419514064 419514211 2.710000e-61 246.0
31 TraesCS2A01G343400 chr5A 93.125 160 11 0 2749 2908 40029044 40028885 5.870000e-58 235.0
32 TraesCS2A01G343400 chr5A 94.702 151 8 0 2749 2899 622192450 622192600 5.870000e-58 235.0
33 TraesCS2A01G343400 chr5A 92.157 51 3 1 2695 2745 398727714 398727665 1.750000e-08 71.3
34 TraesCS2A01G343400 chr6A 96.859 191 6 0 3329 3519 230378798 230378608 1.580000e-83 320.0
35 TraesCS2A01G343400 chr6A 96.859 191 6 0 3329 3519 326819350 326819160 1.580000e-83 320.0
36 TraesCS2A01G343400 chr6A 95.455 154 6 1 2749 2902 553185174 553185022 9.760000e-61 244.0
37 TraesCS2A01G343400 chr6A 95.333 150 7 0 2749 2898 585107066 585107215 4.540000e-59 239.0
38 TraesCS2A01G343400 chr5B 95.349 43 2 0 2707 2749 501465482 501465524 6.300000e-08 69.4
39 TraesCS2A01G343400 chr5B 90.476 42 4 0 286 327 571752090 571752131 4.910000e-04 56.5
40 TraesCS2A01G343400 chr6B 91.667 48 2 1 2698 2745 445539743 445539698 8.150000e-07 65.8
41 TraesCS2A01G343400 chr7B 97.222 36 1 0 2710 2745 148413565 148413530 1.050000e-05 62.1
42 TraesCS2A01G343400 chr7B 94.737 38 2 0 2712 2749 666757639 666757602 3.790000e-05 60.2
43 TraesCS2A01G343400 chr5D 92.857 42 3 0 286 327 464564534 464564493 1.050000e-05 62.1
44 TraesCS2A01G343400 chr4B 97.222 36 1 0 2710 2745 563881086 563881121 1.050000e-05 62.1
45 TraesCS2A01G343400 chr3B 94.872 39 2 0 2707 2745 441121312 441121350 1.050000e-05 62.1
46 TraesCS2A01G343400 chr4D 97.059 34 1 0 2712 2745 247369700 247369733 1.360000e-04 58.4
47 TraesCS2A01G343400 chr1D 97.059 34 1 0 2712 2745 397840277 397840244 1.360000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G343400 chr2A 580280228 580283746 3518 False 6499.000000 6499 100.000000 1 3519 1 chr2A.!!$F1 3518
1 TraesCS2A01G343400 chr2A 580324425 580325069 644 False 749.000000 749 87.597000 1877 2521 1 chr2A.!!$F2 644
2 TraesCS2A01G343400 chr2A 580252137 580254015 1878 False 483.500000 776 86.758000 1010 2520 2 chr2A.!!$F4 1510
3 TraesCS2A01G343400 chr2A 580384921 580385573 652 False 357.000000 357 77.376000 1892 2524 1 chr2A.!!$F3 632
4 TraesCS2A01G343400 chr2D 413272611 413275815 3204 False 1569.666667 4106 93.109667 1 3330 3 chr2D.!!$F4 3329
5 TraesCS2A01G343400 chr2D 413290559 413291212 653 False 734.000000 734 87.156000 1877 2521 1 chr2D.!!$F1 644
6 TraesCS2A01G343400 chr2D 413263979 413265822 1843 False 500.000000 809 87.199500 1010 2520 2 chr2D.!!$F3 1510
7 TraesCS2A01G343400 chr2D 413353539 413354189 650 False 342.000000 342 76.970000 1894 2524 1 chr2D.!!$F2 630
8 TraesCS2A01G343400 chr2B 486741124 486742864 1740 False 1160.500000 2058 92.595500 625 3083 2 chr2B.!!$F4 2458
9 TraesCS2A01G343400 chr2B 486770881 486771540 659 False 750.000000 750 87.443000 1877 2527 1 chr2B.!!$F1 650
10 TraesCS2A01G343400 chr2B 486584936 486589444 4508 False 489.000000 771 85.442000 1010 2520 2 chr2B.!!$F2 1510
11 TraesCS2A01G343400 chr2B 486733290 486735736 2446 False 421.500000 713 91.809000 35 640 2 chr2B.!!$F3 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 2752 0.244721 TCGTGTACGACCTCGAGAGA 59.755 55.0 15.71 0.0 44.22 3.10 F
1828 6707 0.100682 TTACTAGCTCCTCGCGCTTG 59.899 55.0 5.56 0.0 45.59 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 7171 0.179000 GGACGATCTCCATGTTGGCT 59.821 55.0 0.00 0.00 39.21 4.75 R
3362 8424 0.099791 TTTTTAGCCCGCGCTATTGC 59.900 50.0 5.56 2.17 46.89 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 8.688229 CCCATCCAGGAGTTGGGTTGATATATA 61.688 44.444 17.65 0.00 46.74 0.86
68 69 8.861086 TGGGTTGATATATACACTTCTCTCTTC 58.139 37.037 0.00 0.00 0.00 2.87
185 2037 7.194112 TGAGATGGTGACCATGTTTTATAGA 57.806 36.000 23.89 0.00 45.26 1.98
275 2127 3.318839 CCATTTTGAGGTGCACTGAGAAA 59.681 43.478 17.98 13.02 0.00 2.52
282 2134 1.873591 GGTGCACTGAGAAACGTCATT 59.126 47.619 17.98 0.00 0.00 2.57
468 2320 6.377146 CCATGCGCCTAAGGGTAAATATTAAT 59.623 38.462 4.18 0.00 34.45 1.40
568 2421 1.745232 TATCGTGTGGCCAAATGGAC 58.255 50.000 15.46 0.00 45.93 4.02
600 2453 9.998106 ATATGACACATTACATAGTTAGGGTTC 57.002 33.333 0.00 0.00 33.46 3.62
613 2466 1.620822 AGGGTTCGCAAGCATCTTTT 58.379 45.000 0.00 0.00 37.18 2.27
870 2732 7.340487 ACTTTGAATGGAGAGTTTTGACTTTCT 59.660 33.333 0.00 0.00 0.00 2.52
873 2735 5.931441 ATGGAGAGTTTTGACTTTCTTCG 57.069 39.130 0.00 0.00 0.00 3.79
890 2752 0.244721 TCGTGTACGACCTCGAGAGA 59.755 55.000 15.71 0.00 44.22 3.10
902 2764 4.015764 ACCTCGAGAGAAACCTAACCTAC 58.984 47.826 15.71 0.00 41.32 3.18
905 2767 4.660168 TCGAGAGAAACCTAACCTACTGT 58.340 43.478 0.00 0.00 37.03 3.55
938 2800 6.197282 CGTCAACCTATCATACATATGCGATC 59.803 42.308 1.58 0.00 33.76 3.69
1029 2897 1.915266 AGCTGCACTGCTCCCTGTA 60.915 57.895 1.02 0.00 39.34 2.74
1119 2987 2.784347 CTCAAGAACAAGAAGGGGGAC 58.216 52.381 0.00 0.00 0.00 4.46
1204 3079 0.960364 TAAGGCCGCTTGCTTCTTGG 60.960 55.000 0.00 0.00 40.92 3.61
1334 3239 4.333649 ACGCTGTAAGATCACAAATCCATG 59.666 41.667 0.00 0.00 34.07 3.66
1375 3280 8.456471 CCAAGTGGTAGATAAATATGCATGATG 58.544 37.037 10.16 0.00 0.00 3.07
1522 3740 2.656002 CAGAACCTATCGTCTCCTCCA 58.344 52.381 0.00 0.00 0.00 3.86
1564 3785 5.985530 CGATTCATGGTATGCTTCAGACTTA 59.014 40.000 0.00 0.00 0.00 2.24
1615 3836 3.749064 ATGGACTCACGACGCGCT 61.749 61.111 5.73 0.00 0.00 5.92
1739 3964 3.003068 CCCGTACATCACCTTCTACTACG 59.997 52.174 0.00 0.00 0.00 3.51
1770 4559 4.174762 GACGGAGAGCAAGGTAAAACTAG 58.825 47.826 0.00 0.00 0.00 2.57
1771 4560 3.577415 ACGGAGAGCAAGGTAAAACTAGT 59.423 43.478 0.00 0.00 0.00 2.57
1776 6650 7.257003 GGAGAGCAAGGTAAAACTAGTACTAC 58.743 42.308 0.00 0.65 0.00 2.73
1782 6656 9.995957 GCAAGGTAAAACTAGTACTACTACTAC 57.004 37.037 0.00 0.00 34.79 2.73
1828 6707 0.100682 TTACTAGCTCCTCGCGCTTG 59.899 55.000 5.56 0.00 45.59 4.01
2552 7574 5.252969 TGCATGCTTCACTTAATTGATCC 57.747 39.130 20.33 0.00 0.00 3.36
2558 7580 4.636206 GCTTCACTTAATTGATCCGTCCTT 59.364 41.667 0.00 0.00 0.00 3.36
2623 7645 3.758554 ACGGGATGAACCATCTTTTCTTG 59.241 43.478 6.86 0.00 40.39 3.02
2626 7648 5.414454 CGGGATGAACCATCTTTTCTTGTAA 59.586 40.000 6.86 0.00 40.39 2.41
2641 7663 8.603242 TTTTCTTGTAATCTGTACCACTTCTC 57.397 34.615 0.00 0.00 0.00 2.87
2643 7665 7.540474 TCTTGTAATCTGTACCACTTCTCTT 57.460 36.000 0.00 0.00 0.00 2.85
2694 7716 7.040478 CGATTTGCCTCATCCATTAAATAAGGA 60.040 37.037 0.00 0.00 35.59 3.36
2714 7736 6.516739 AGGAATTTAGAAGTGCTTTTAGGC 57.483 37.500 0.00 0.00 0.00 3.93
2715 7737 6.249192 AGGAATTTAGAAGTGCTTTTAGGCT 58.751 36.000 0.00 0.00 0.00 4.58
2717 7739 5.904362 ATTTAGAAGTGCTTTTAGGCTGG 57.096 39.130 0.00 0.00 0.00 4.85
2718 7740 2.959465 AGAAGTGCTTTTAGGCTGGT 57.041 45.000 0.00 0.00 0.00 4.00
2719 7741 2.784347 AGAAGTGCTTTTAGGCTGGTC 58.216 47.619 0.00 0.00 0.00 4.02
2720 7742 2.106511 AGAAGTGCTTTTAGGCTGGTCA 59.893 45.455 0.00 0.00 0.00 4.02
2721 7743 2.887151 AGTGCTTTTAGGCTGGTCAT 57.113 45.000 0.00 0.00 0.00 3.06
2722 7744 4.019321 AGAAGTGCTTTTAGGCTGGTCATA 60.019 41.667 0.00 0.00 0.00 2.15
2723 7745 3.610911 AGTGCTTTTAGGCTGGTCATAC 58.389 45.455 0.00 0.00 0.00 2.39
2724 7746 3.264450 AGTGCTTTTAGGCTGGTCATACT 59.736 43.478 0.00 0.00 0.00 2.12
2725 7747 3.375299 GTGCTTTTAGGCTGGTCATACTG 59.625 47.826 0.00 0.00 0.00 2.74
2726 7748 2.945668 GCTTTTAGGCTGGTCATACTGG 59.054 50.000 0.00 0.00 0.00 4.00
2727 7749 3.545703 CTTTTAGGCTGGTCATACTGGG 58.454 50.000 0.00 0.00 0.00 4.45
2728 7750 1.507140 TTAGGCTGGTCATACTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
2729 7751 0.639943 TAGGCTGGTCATACTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
2730 7752 0.692419 AGGCTGGTCATACTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
2731 7753 0.983378 GGCTGGTCATACTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
2732 7754 1.691482 GGCTGGTCATACTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
2733 7755 2.116238 GCTGGTCATACTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2734 7756 2.158943 GCTGGTCATACTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
2735 7757 3.375699 CTGGTCATACTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
2736 7758 3.775316 CTGGTCATACTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
2737 7759 4.950361 TGGTCATACTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
2738 7760 4.960469 TGGTCATACTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
2739 7761 5.206587 GGTCATACTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
2740 7762 5.839606 GGTCATACTGGGGAGTAACTTAGAT 59.160 44.000 0.00 0.00 0.00 1.98
2741 7763 6.326843 GGTCATACTGGGGAGTAACTTAGATT 59.673 42.308 0.00 0.00 0.00 2.40
2742 7764 7.508296 GGTCATACTGGGGAGTAACTTAGATTA 59.492 40.741 0.00 0.00 0.00 1.75
2743 7765 8.578151 GTCATACTGGGGAGTAACTTAGATTAG 58.422 40.741 0.00 0.00 0.00 1.73
2744 7766 8.287350 TCATACTGGGGAGTAACTTAGATTAGT 58.713 37.037 0.00 0.00 0.00 2.24
2745 7767 6.793505 ACTGGGGAGTAACTTAGATTAGTG 57.206 41.667 0.00 0.00 0.00 2.74
2746 7768 6.262207 ACTGGGGAGTAACTTAGATTAGTGT 58.738 40.000 0.00 0.00 0.00 3.55
2747 7769 6.380560 ACTGGGGAGTAACTTAGATTAGTGTC 59.619 42.308 0.00 0.00 0.00 3.67
2748 7770 6.258354 TGGGGAGTAACTTAGATTAGTGTCA 58.742 40.000 0.00 0.00 0.00 3.58
2749 7771 6.154021 TGGGGAGTAACTTAGATTAGTGTCAC 59.846 42.308 0.00 0.00 0.00 3.67
2750 7772 6.380560 GGGGAGTAACTTAGATTAGTGTCACT 59.619 42.308 10.99 10.99 0.00 3.41
2751 7773 7.416551 GGGGAGTAACTTAGATTAGTGTCACTC 60.417 44.444 9.26 0.00 34.63 3.51
2752 7774 7.122353 GGGAGTAACTTAGATTAGTGTCACTCA 59.878 40.741 9.26 0.00 35.78 3.41
2753 7775 8.688151 GGAGTAACTTAGATTAGTGTCACTCAT 58.312 37.037 9.26 3.73 35.78 2.90
2759 7781 9.654663 ACTTAGATTAGTGTCACTCATTTTACC 57.345 33.333 9.26 0.00 0.00 2.85
2760 7782 9.877178 CTTAGATTAGTGTCACTCATTTTACCT 57.123 33.333 9.26 0.13 0.00 3.08
2761 7783 9.871238 TTAGATTAGTGTCACTCATTTTACCTC 57.129 33.333 9.26 0.00 0.00 3.85
2762 7784 7.036220 AGATTAGTGTCACTCATTTTACCTCG 58.964 38.462 9.26 0.00 0.00 4.63
2763 7785 3.926616 AGTGTCACTCATTTTACCTCGG 58.073 45.455 0.00 0.00 0.00 4.63
2764 7786 3.000727 GTGTCACTCATTTTACCTCGGG 58.999 50.000 0.00 0.00 0.00 5.14
2765 7787 2.901192 TGTCACTCATTTTACCTCGGGA 59.099 45.455 0.00 0.00 0.00 5.14
2766 7788 3.325425 TGTCACTCATTTTACCTCGGGAA 59.675 43.478 0.00 0.00 0.00 3.97
2767 7789 3.933332 GTCACTCATTTTACCTCGGGAAG 59.067 47.826 0.00 0.00 0.00 3.46
2768 7790 2.678336 CACTCATTTTACCTCGGGAAGC 59.322 50.000 0.00 0.00 0.00 3.86
2769 7791 1.933853 CTCATTTTACCTCGGGAAGCG 59.066 52.381 0.00 0.00 0.00 4.68
2770 7792 0.377203 CATTTTACCTCGGGAAGCGC 59.623 55.000 0.00 0.00 0.00 5.92
2771 7793 0.252197 ATTTTACCTCGGGAAGCGCT 59.748 50.000 2.64 2.64 0.00 5.92
2772 7794 0.896923 TTTTACCTCGGGAAGCGCTA 59.103 50.000 12.05 0.00 0.00 4.26
2773 7795 1.117150 TTTACCTCGGGAAGCGCTAT 58.883 50.000 12.05 0.00 0.00 2.97
2774 7796 0.387929 TTACCTCGGGAAGCGCTATG 59.612 55.000 12.05 0.24 0.00 2.23
2775 7797 0.754217 TACCTCGGGAAGCGCTATGT 60.754 55.000 12.05 0.00 0.00 2.29
2776 7798 1.144057 CCTCGGGAAGCGCTATGTT 59.856 57.895 12.05 0.00 0.00 2.71
2777 7799 0.387929 CCTCGGGAAGCGCTATGTTA 59.612 55.000 12.05 0.00 0.00 2.41
2778 7800 1.488527 CTCGGGAAGCGCTATGTTAC 58.511 55.000 12.05 0.00 0.00 2.50
2779 7801 0.818938 TCGGGAAGCGCTATGTTACA 59.181 50.000 12.05 0.00 0.00 2.41
2780 7802 1.202371 TCGGGAAGCGCTATGTTACAG 60.202 52.381 12.05 0.00 0.00 2.74
2781 7803 1.470979 CGGGAAGCGCTATGTTACAGT 60.471 52.381 12.05 0.00 0.00 3.55
2782 7804 2.223641 CGGGAAGCGCTATGTTACAGTA 60.224 50.000 12.05 0.00 0.00 2.74
2783 7805 3.735820 CGGGAAGCGCTATGTTACAGTAA 60.736 47.826 12.05 0.00 0.00 2.24
2784 7806 3.554731 GGGAAGCGCTATGTTACAGTAAC 59.445 47.826 12.05 15.58 39.11 2.50
2807 7829 7.524717 ACATATTTTGTTACTTCAAGCACCT 57.475 32.000 0.00 0.00 33.74 4.00
2808 7830 7.593825 ACATATTTTGTTACTTCAAGCACCTC 58.406 34.615 0.00 0.00 33.74 3.85
2809 7831 7.448469 ACATATTTTGTTACTTCAAGCACCTCT 59.552 33.333 0.00 0.00 33.74 3.69
2810 7832 5.751243 TTTTGTTACTTCAAGCACCTCTC 57.249 39.130 0.00 0.00 0.00 3.20
2811 7833 4.689612 TTGTTACTTCAAGCACCTCTCT 57.310 40.909 0.00 0.00 0.00 3.10
2812 7834 4.258702 TGTTACTTCAAGCACCTCTCTC 57.741 45.455 0.00 0.00 0.00 3.20
2813 7835 3.006967 TGTTACTTCAAGCACCTCTCTCC 59.993 47.826 0.00 0.00 0.00 3.71
2814 7836 2.022718 ACTTCAAGCACCTCTCTCCT 57.977 50.000 0.00 0.00 0.00 3.69
2815 7837 1.899142 ACTTCAAGCACCTCTCTCCTC 59.101 52.381 0.00 0.00 0.00 3.71
2816 7838 1.898472 CTTCAAGCACCTCTCTCCTCA 59.102 52.381 0.00 0.00 0.00 3.86
2817 7839 2.244486 TCAAGCACCTCTCTCCTCAT 57.756 50.000 0.00 0.00 0.00 2.90
2818 7840 2.544721 TCAAGCACCTCTCTCCTCATT 58.455 47.619 0.00 0.00 0.00 2.57
2819 7841 3.713003 TCAAGCACCTCTCTCCTCATTA 58.287 45.455 0.00 0.00 0.00 1.90
2820 7842 4.096681 TCAAGCACCTCTCTCCTCATTAA 58.903 43.478 0.00 0.00 0.00 1.40
2821 7843 4.532126 TCAAGCACCTCTCTCCTCATTAAA 59.468 41.667 0.00 0.00 0.00 1.52
2822 7844 5.190528 TCAAGCACCTCTCTCCTCATTAAAT 59.809 40.000 0.00 0.00 0.00 1.40
2823 7845 6.384015 TCAAGCACCTCTCTCCTCATTAAATA 59.616 38.462 0.00 0.00 0.00 1.40
2824 7846 6.168270 AGCACCTCTCTCCTCATTAAATAC 57.832 41.667 0.00 0.00 0.00 1.89
2825 7847 5.902431 AGCACCTCTCTCCTCATTAAATACT 59.098 40.000 0.00 0.00 0.00 2.12
2826 7848 6.385467 AGCACCTCTCTCCTCATTAAATACTT 59.615 38.462 0.00 0.00 0.00 2.24
2827 7849 6.481644 GCACCTCTCTCCTCATTAAATACTTG 59.518 42.308 0.00 0.00 0.00 3.16
2828 7850 6.481644 CACCTCTCTCCTCATTAAATACTTGC 59.518 42.308 0.00 0.00 0.00 4.01
2829 7851 5.994668 CCTCTCTCCTCATTAAATACTTGCC 59.005 44.000 0.00 0.00 0.00 4.52
2830 7852 6.408548 CCTCTCTCCTCATTAAATACTTGCCA 60.409 42.308 0.00 0.00 0.00 4.92
2831 7853 6.349300 TCTCTCCTCATTAAATACTTGCCAC 58.651 40.000 0.00 0.00 0.00 5.01
2832 7854 6.061022 TCTCCTCATTAAATACTTGCCACA 57.939 37.500 0.00 0.00 0.00 4.17
2833 7855 6.662755 TCTCCTCATTAAATACTTGCCACAT 58.337 36.000 0.00 0.00 0.00 3.21
2834 7856 7.801104 TCTCCTCATTAAATACTTGCCACATA 58.199 34.615 0.00 0.00 0.00 2.29
2835 7857 8.271458 TCTCCTCATTAAATACTTGCCACATAA 58.729 33.333 0.00 0.00 0.00 1.90
2836 7858 8.450578 TCCTCATTAAATACTTGCCACATAAG 57.549 34.615 0.00 0.00 0.00 1.73
2837 7859 7.013274 TCCTCATTAAATACTTGCCACATAAGC 59.987 37.037 0.00 0.00 0.00 3.09
2838 7860 7.201812 CCTCATTAAATACTTGCCACATAAGCA 60.202 37.037 0.00 0.00 38.81 3.91
2849 7871 7.830940 TTGCCACATAAGCAAAATTATCTTG 57.169 32.000 0.00 0.00 46.71 3.02
2850 7872 6.339730 TGCCACATAAGCAAAATTATCTTGG 58.660 36.000 0.00 0.00 37.28 3.61
2851 7873 5.754890 GCCACATAAGCAAAATTATCTTGGG 59.245 40.000 0.00 0.00 31.49 4.12
2852 7874 6.406849 GCCACATAAGCAAAATTATCTTGGGA 60.407 38.462 0.00 0.00 31.49 4.37
2853 7875 7.687592 GCCACATAAGCAAAATTATCTTGGGAT 60.688 37.037 0.00 0.00 31.49 3.85
2854 7876 7.654520 CCACATAAGCAAAATTATCTTGGGATG 59.345 37.037 0.00 0.00 33.71 3.51
2855 7877 8.199449 CACATAAGCAAAATTATCTTGGGATGT 58.801 33.333 0.00 0.00 33.71 3.06
2856 7878 8.199449 ACATAAGCAAAATTATCTTGGGATGTG 58.801 33.333 0.00 0.00 33.71 3.21
2857 7879 6.610075 AAGCAAAATTATCTTGGGATGTGT 57.390 33.333 0.00 0.00 33.71 3.72
2858 7880 6.610075 AGCAAAATTATCTTGGGATGTGTT 57.390 33.333 0.00 0.00 33.71 3.32
2859 7881 7.716799 AGCAAAATTATCTTGGGATGTGTTA 57.283 32.000 0.00 0.00 33.71 2.41
2860 7882 8.133024 AGCAAAATTATCTTGGGATGTGTTAA 57.867 30.769 0.00 0.00 33.71 2.01
2861 7883 8.253113 AGCAAAATTATCTTGGGATGTGTTAAG 58.747 33.333 0.00 0.00 33.71 1.85
2862 7884 8.034804 GCAAAATTATCTTGGGATGTGTTAAGT 58.965 33.333 0.00 0.00 33.71 2.24
2863 7885 9.927668 CAAAATTATCTTGGGATGTGTTAAGTT 57.072 29.630 0.00 0.00 33.71 2.66
2866 7888 9.975218 AATTATCTTGGGATGTGTTAAGTTACT 57.025 29.630 0.00 0.00 33.71 2.24
2868 7890 9.880157 TTATCTTGGGATGTGTTAAGTTACTAC 57.120 33.333 0.00 0.00 33.71 2.73
2869 7891 6.704310 TCTTGGGATGTGTTAAGTTACTACC 58.296 40.000 0.00 0.00 0.00 3.18
2870 7892 6.499350 TCTTGGGATGTGTTAAGTTACTACCT 59.501 38.462 0.00 0.00 0.00 3.08
2871 7893 7.675195 TCTTGGGATGTGTTAAGTTACTACCTA 59.325 37.037 0.00 0.00 0.00 3.08
2872 7894 7.795534 TGGGATGTGTTAAGTTACTACCTAA 57.204 36.000 0.00 0.00 0.00 2.69
2873 7895 7.844009 TGGGATGTGTTAAGTTACTACCTAAG 58.156 38.462 0.00 0.00 0.00 2.18
2874 7896 7.455638 TGGGATGTGTTAAGTTACTACCTAAGT 59.544 37.037 0.00 0.00 42.62 2.24
2875 7897 8.316946 GGGATGTGTTAAGTTACTACCTAAGTT 58.683 37.037 0.00 0.00 39.80 2.66
2888 7910 9.584008 TTACTACCTAAGTTATCCTCACTATGG 57.416 37.037 0.00 0.00 39.80 2.74
2889 7911 5.810080 ACCTAAGTTATCCTCACTATGGC 57.190 43.478 0.00 0.00 0.00 4.40
2890 7912 5.468658 ACCTAAGTTATCCTCACTATGGCT 58.531 41.667 0.00 0.00 0.00 4.75
2891 7913 6.621394 ACCTAAGTTATCCTCACTATGGCTA 58.379 40.000 0.00 0.00 0.00 3.93
2892 7914 6.722129 ACCTAAGTTATCCTCACTATGGCTAG 59.278 42.308 0.00 0.00 0.00 3.42
2893 7915 5.476091 AAGTTATCCTCACTATGGCTAGC 57.524 43.478 6.04 6.04 0.00 3.42
2894 7916 3.835395 AGTTATCCTCACTATGGCTAGCC 59.165 47.826 27.71 27.71 0.00 3.93
2895 7917 2.711895 ATCCTCACTATGGCTAGCCT 57.288 50.000 33.07 20.80 36.94 4.58
2896 7918 2.478872 TCCTCACTATGGCTAGCCTT 57.521 50.000 33.07 28.43 36.94 4.35
2897 7919 3.612795 TCCTCACTATGGCTAGCCTTA 57.387 47.619 33.07 28.03 36.94 2.69
2898 7920 3.231818 TCCTCACTATGGCTAGCCTTAC 58.768 50.000 33.07 8.57 36.94 2.34
2899 7921 2.965831 CCTCACTATGGCTAGCCTTACA 59.034 50.000 33.07 14.78 36.94 2.41
2900 7922 3.388024 CCTCACTATGGCTAGCCTTACAA 59.612 47.826 33.07 14.38 36.94 2.41
2901 7923 4.141711 CCTCACTATGGCTAGCCTTACAAA 60.142 45.833 33.07 13.59 36.94 2.83
2902 7924 5.023533 TCACTATGGCTAGCCTTACAAAG 57.976 43.478 33.07 21.93 36.94 2.77
2903 7925 4.469945 TCACTATGGCTAGCCTTACAAAGT 59.530 41.667 33.07 22.54 36.94 2.66
2904 7926 5.659525 TCACTATGGCTAGCCTTACAAAGTA 59.340 40.000 33.07 11.23 36.94 2.24
2905 7927 6.155565 TCACTATGGCTAGCCTTACAAAGTAA 59.844 38.462 33.07 11.63 36.94 2.24
2906 7928 6.480320 CACTATGGCTAGCCTTACAAAGTAAG 59.520 42.308 33.07 19.65 36.94 2.34
2907 7929 5.693769 ATGGCTAGCCTTACAAAGTAAGA 57.306 39.130 33.07 9.68 36.94 2.10
2908 7930 5.086104 TGGCTAGCCTTACAAAGTAAGAG 57.914 43.478 33.07 8.50 36.94 2.85
2909 7931 4.081087 TGGCTAGCCTTACAAAGTAAGAGG 60.081 45.833 33.07 4.86 36.94 3.69
2910 7932 4.161754 GGCTAGCCTTACAAAGTAAGAGGA 59.838 45.833 27.17 2.73 0.00 3.71
2911 7933 5.110598 GCTAGCCTTACAAAGTAAGAGGAC 58.889 45.833 16.27 5.28 0.00 3.85
2968 7992 1.220749 GCCCAGATGCTTCGTACCA 59.779 57.895 0.00 0.00 0.00 3.25
2970 7994 0.537188 CCCAGATGCTTCGTACCAGT 59.463 55.000 0.00 0.00 0.00 4.00
3022 8047 2.897326 TGTTGGAGAGAAGAATGGACGA 59.103 45.455 0.00 0.00 0.00 4.20
3053 8078 1.893137 TGATGACACAAGACCGTAGCT 59.107 47.619 0.00 0.00 0.00 3.32
3101 8127 3.731728 GCATGGTGAGGGGAGCCA 61.732 66.667 0.00 0.00 36.64 4.75
3105 8131 3.637273 GGTGAGGGGAGCCAACGT 61.637 66.667 0.00 0.00 0.00 3.99
3109 8135 0.536460 TGAGGGGAGCCAACGTTTTC 60.536 55.000 0.00 0.00 0.00 2.29
3145 8171 3.197549 TCATCTCGGACATGTTGATCCAA 59.802 43.478 0.00 0.00 34.35 3.53
3171 8229 1.068417 TCGTTGTTGTCGAGGTGGG 59.932 57.895 0.00 0.00 33.38 4.61
3179 8237 3.961414 TCGAGGTGGGCCCAAACC 61.961 66.667 30.64 25.39 36.66 3.27
3230 8291 4.628074 ACCGGTATTTGAAGATATGTCCG 58.372 43.478 4.49 0.00 36.00 4.79
3232 8293 3.432252 CGGTATTTGAAGATATGTCCGGC 59.568 47.826 0.00 0.00 33.20 6.13
3242 8303 1.101635 TATGTCCGGCAGACTCCTCG 61.102 60.000 0.00 0.00 46.46 4.63
3252 8313 2.544069 GCAGACTCCTCGGCTTACATAC 60.544 54.545 0.00 0.00 34.96 2.39
3298 8360 6.546484 CCACCCACATTTCTCCAATCTATAT 58.454 40.000 0.00 0.00 0.00 0.86
3311 8373 5.013079 TCCAATCTATATGCGGTCCAAATCT 59.987 40.000 0.00 0.00 0.00 2.40
3330 8392 9.341899 CCAAATCTAGTTTTGTATTGCTAACAC 57.658 33.333 19.88 0.00 35.30 3.32
3337 8399 8.773404 AGTTTTGTATTGCTAACACTACTAGG 57.227 34.615 0.00 0.00 34.07 3.02
3338 8400 7.822822 AGTTTTGTATTGCTAACACTACTAGGG 59.177 37.037 0.00 0.00 34.07 3.53
3339 8401 7.484993 TTTGTATTGCTAACACTACTAGGGA 57.515 36.000 0.00 0.00 34.07 4.20
3340 8402 7.484993 TTGTATTGCTAACACTACTAGGGAA 57.515 36.000 0.00 0.00 34.07 3.97
3341 8403 7.484993 TGTATTGCTAACACTACTAGGGAAA 57.515 36.000 0.00 0.00 34.07 3.13
3342 8404 7.909518 TGTATTGCTAACACTACTAGGGAAAA 58.090 34.615 0.00 0.00 34.07 2.29
3343 8405 7.820872 TGTATTGCTAACACTACTAGGGAAAAC 59.179 37.037 0.00 0.00 34.07 2.43
3344 8406 5.156608 TGCTAACACTACTAGGGAAAACC 57.843 43.478 0.00 0.00 40.67 3.27
3360 8422 7.462571 GGGAAAACCTTATACACAGAACATT 57.537 36.000 0.00 0.00 35.85 2.71
3361 8423 8.570068 GGGAAAACCTTATACACAGAACATTA 57.430 34.615 0.00 0.00 35.85 1.90
3362 8424 8.674607 GGGAAAACCTTATACACAGAACATTAG 58.325 37.037 0.00 0.00 35.85 1.73
3363 8425 8.182227 GGAAAACCTTATACACAGAACATTAGC 58.818 37.037 0.00 0.00 0.00 3.09
3364 8426 8.630054 AAAACCTTATACACAGAACATTAGCA 57.370 30.769 0.00 0.00 0.00 3.49
3365 8427 8.630054 AAACCTTATACACAGAACATTAGCAA 57.370 30.769 0.00 0.00 0.00 3.91
3366 8428 8.807948 AACCTTATACACAGAACATTAGCAAT 57.192 30.769 0.00 0.00 0.00 3.56
3367 8429 9.899661 AACCTTATACACAGAACATTAGCAATA 57.100 29.630 0.00 0.00 0.00 1.90
3368 8430 9.547753 ACCTTATACACAGAACATTAGCAATAG 57.452 33.333 0.00 0.00 0.00 1.73
3369 8431 8.499162 CCTTATACACAGAACATTAGCAATAGC 58.501 37.037 0.00 0.00 42.56 2.97
3389 8451 3.784845 CGGGCTAAAAACGCATGTT 57.215 47.368 0.00 0.00 40.98 2.71
3390 8452 1.335935 CGGGCTAAAAACGCATGTTG 58.664 50.000 0.00 0.00 38.62 3.33
3391 8453 1.708822 GGGCTAAAAACGCATGTTGG 58.291 50.000 0.00 0.00 38.62 3.77
3392 8454 1.000394 GGGCTAAAAACGCATGTTGGT 60.000 47.619 0.00 0.00 38.62 3.67
3393 8455 2.058057 GGCTAAAAACGCATGTTGGTG 58.942 47.619 0.00 0.00 38.62 4.17
3394 8456 1.455408 GCTAAAAACGCATGTTGGTGC 59.545 47.619 0.00 0.00 38.62 5.01
3395 8457 2.862140 GCTAAAAACGCATGTTGGTGCT 60.862 45.455 0.00 0.00 42.88 4.40
3396 8458 3.610585 GCTAAAAACGCATGTTGGTGCTA 60.611 43.478 0.00 0.00 42.88 3.49
3397 8459 3.444703 AAAAACGCATGTTGGTGCTAA 57.555 38.095 0.00 0.00 42.88 3.09
3398 8460 3.658757 AAAACGCATGTTGGTGCTAAT 57.341 38.095 0.00 0.00 42.88 1.73
3399 8461 3.658757 AAACGCATGTTGGTGCTAATT 57.341 38.095 0.00 0.00 42.88 1.40
3400 8462 4.775058 AAACGCATGTTGGTGCTAATTA 57.225 36.364 0.00 0.00 42.88 1.40
3401 8463 4.355543 AACGCATGTTGGTGCTAATTAG 57.644 40.909 8.20 8.20 42.88 1.73
3402 8464 3.427503 AACGCATGTTGGTGCTAATTAGC 60.428 43.478 27.23 27.23 42.45 3.09
3403 8465 5.873290 AACGCATGTTGGTGCTAATTAGCA 61.873 41.667 31.53 31.53 46.14 3.49
3418 8480 4.629115 GCAGCAGCGCGGTGTTTT 62.629 61.111 35.36 20.59 45.25 2.43
3419 8481 2.942879 CAGCAGCGCGGTGTTTTA 59.057 55.556 35.36 0.00 38.36 1.52
3420 8482 1.281353 CAGCAGCGCGGTGTTTTAA 59.719 52.632 35.36 0.00 38.36 1.52
3421 8483 0.317436 CAGCAGCGCGGTGTTTTAAA 60.317 50.000 35.36 0.00 38.36 1.52
3422 8484 0.317519 AGCAGCGCGGTGTTTTAAAC 60.318 50.000 35.36 19.09 0.00 2.01
3423 8485 1.272784 GCAGCGCGGTGTTTTAAACC 61.273 55.000 35.36 15.40 0.00 3.27
3430 8492 1.954437 GGTGTTTTAAACCGCGCTAC 58.046 50.000 5.56 0.00 0.00 3.58
3431 8493 1.263752 GGTGTTTTAAACCGCGCTACA 59.736 47.619 5.56 0.00 0.00 2.74
3432 8494 2.567067 GTGTTTTAAACCGCGCTACAG 58.433 47.619 5.56 0.00 0.00 2.74
3433 8495 2.221517 GTGTTTTAAACCGCGCTACAGA 59.778 45.455 5.56 0.00 0.00 3.41
3434 8496 3.068560 TGTTTTAAACCGCGCTACAGAT 58.931 40.909 5.56 0.00 0.00 2.90
3435 8497 4.091800 GTGTTTTAAACCGCGCTACAGATA 59.908 41.667 5.56 0.00 0.00 1.98
3436 8498 4.091800 TGTTTTAAACCGCGCTACAGATAC 59.908 41.667 5.56 0.00 0.00 2.24
3437 8499 3.507103 TTAAACCGCGCTACAGATACA 57.493 42.857 5.56 0.00 0.00 2.29
3438 8500 1.922570 AAACCGCGCTACAGATACAG 58.077 50.000 5.56 0.00 0.00 2.74
3439 8501 0.815734 AACCGCGCTACAGATACAGT 59.184 50.000 5.56 0.00 0.00 3.55
3440 8502 0.815734 ACCGCGCTACAGATACAGTT 59.184 50.000 5.56 0.00 0.00 3.16
3441 8503 2.019249 ACCGCGCTACAGATACAGTTA 58.981 47.619 5.56 0.00 0.00 2.24
3442 8504 2.621998 ACCGCGCTACAGATACAGTTAT 59.378 45.455 5.56 0.00 0.00 1.89
3443 8505 3.817084 ACCGCGCTACAGATACAGTTATA 59.183 43.478 5.56 0.00 0.00 0.98
3444 8506 4.083431 ACCGCGCTACAGATACAGTTATAG 60.083 45.833 5.56 0.00 0.00 1.31
3445 8507 3.846896 CGCGCTACAGATACAGTTATAGC 59.153 47.826 5.56 0.00 33.31 2.97
3446 8508 4.612939 CGCGCTACAGATACAGTTATAGCA 60.613 45.833 5.56 0.00 35.79 3.49
3447 8509 4.854291 GCGCTACAGATACAGTTATAGCAG 59.146 45.833 0.00 0.00 35.79 4.24
3448 8510 5.563085 GCGCTACAGATACAGTTATAGCAGT 60.563 44.000 0.00 0.00 35.79 4.40
3449 8511 6.348295 GCGCTACAGATACAGTTATAGCAGTA 60.348 42.308 0.00 0.00 35.79 2.74
3450 8512 7.237871 CGCTACAGATACAGTTATAGCAGTAG 58.762 42.308 0.00 0.00 35.79 2.57
3451 8513 7.024768 GCTACAGATACAGTTATAGCAGTAGC 58.975 42.308 8.99 8.99 42.30 3.58
3462 8524 3.884350 CAGTAGCGCGCCCGAGTA 61.884 66.667 30.33 10.64 36.29 2.59
3463 8525 3.885521 AGTAGCGCGCCCGAGTAC 61.886 66.667 30.33 22.49 36.29 2.73
3464 8526 4.183686 GTAGCGCGCCCGAGTACA 62.184 66.667 30.33 0.00 36.29 2.90
3465 8527 3.442167 TAGCGCGCCCGAGTACAA 61.442 61.111 30.33 0.00 36.29 2.41
3466 8528 2.992273 TAGCGCGCCCGAGTACAAA 61.992 57.895 30.33 0.00 36.29 2.83
3467 8529 2.489539 TAGCGCGCCCGAGTACAAAA 62.490 55.000 30.33 0.00 36.29 2.44
3468 8530 2.776072 CGCGCCCGAGTACAAAAG 59.224 61.111 0.00 0.00 36.29 2.27
3469 8531 2.479198 GCGCCCGAGTACAAAAGC 59.521 61.111 0.00 0.00 0.00 3.51
3470 8532 2.776072 CGCCCGAGTACAAAAGCG 59.224 61.111 6.08 6.08 37.39 4.68
3471 8533 2.479198 GCCCGAGTACAAAAGCGC 59.521 61.111 0.00 0.00 0.00 5.92
3472 8534 2.033194 GCCCGAGTACAAAAGCGCT 61.033 57.895 2.64 2.64 0.00 5.92
3473 8535 0.738412 GCCCGAGTACAAAAGCGCTA 60.738 55.000 12.05 0.00 0.00 4.26
3474 8536 0.997196 CCCGAGTACAAAAGCGCTAC 59.003 55.000 12.05 4.34 0.00 3.58
3475 8537 1.403780 CCCGAGTACAAAAGCGCTACT 60.404 52.381 12.05 10.52 0.00 2.57
3476 8538 2.159338 CCCGAGTACAAAAGCGCTACTA 60.159 50.000 12.05 0.00 0.00 1.82
3477 8539 2.850647 CCGAGTACAAAAGCGCTACTAC 59.149 50.000 12.05 7.94 0.00 2.73
3478 8540 3.427233 CCGAGTACAAAAGCGCTACTACT 60.427 47.826 12.05 12.83 0.00 2.57
3479 8541 4.201851 CCGAGTACAAAAGCGCTACTACTA 60.202 45.833 12.05 0.00 0.00 1.82
3480 8542 5.327091 CGAGTACAAAAGCGCTACTACTAA 58.673 41.667 12.05 0.00 0.00 2.24
3481 8543 5.796935 CGAGTACAAAAGCGCTACTACTAAA 59.203 40.000 12.05 0.00 0.00 1.85
3482 8544 6.306356 CGAGTACAAAAGCGCTACTACTAAAA 59.694 38.462 12.05 0.00 0.00 1.52
3483 8545 7.008992 CGAGTACAAAAGCGCTACTACTAAAAT 59.991 37.037 12.05 0.00 0.00 1.82
3484 8546 8.543862 AGTACAAAAGCGCTACTACTAAAATT 57.456 30.769 12.05 0.00 0.00 1.82
3485 8547 8.654215 AGTACAAAAGCGCTACTACTAAAATTC 58.346 33.333 12.05 0.00 0.00 2.17
3486 8548 6.839033 ACAAAAGCGCTACTACTAAAATTCC 58.161 36.000 12.05 0.00 0.00 3.01
3487 8549 6.128090 ACAAAAGCGCTACTACTAAAATTCCC 60.128 38.462 12.05 0.00 0.00 3.97
3488 8550 4.748277 AGCGCTACTACTAAAATTCCCA 57.252 40.909 8.99 0.00 0.00 4.37
3489 8551 5.291905 AGCGCTACTACTAAAATTCCCAT 57.708 39.130 8.99 0.00 0.00 4.00
3490 8552 5.057149 AGCGCTACTACTAAAATTCCCATG 58.943 41.667 8.99 0.00 0.00 3.66
3491 8553 4.213482 GCGCTACTACTAAAATTCCCATGG 59.787 45.833 4.14 4.14 0.00 3.66
3492 8554 4.213482 CGCTACTACTAAAATTCCCATGGC 59.787 45.833 6.09 0.00 0.00 4.40
3493 8555 5.377478 GCTACTACTAAAATTCCCATGGCT 58.623 41.667 6.09 0.00 0.00 4.75
3494 8556 5.828328 GCTACTACTAAAATTCCCATGGCTT 59.172 40.000 6.09 0.00 0.00 4.35
3495 8557 6.996282 GCTACTACTAAAATTCCCATGGCTTA 59.004 38.462 6.09 0.00 0.00 3.09
3496 8558 7.173390 GCTACTACTAAAATTCCCATGGCTTAG 59.827 40.741 6.09 9.66 0.00 2.18
3497 8559 5.828328 ACTACTAAAATTCCCATGGCTTAGC 59.172 40.000 6.09 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 9.829507 CAAGGATAATATTGAAGAGAGAAGTGT 57.170 33.333 0.00 0.00 0.00 3.55
217 2069 5.642063 ACAATGTTCTACCAACATAAGTCGG 59.358 40.000 0.51 0.00 39.73 4.79
218 2070 6.147164 ACACAATGTTCTACCAACATAAGTCG 59.853 38.462 0.51 2.54 39.73 4.18
275 2127 8.891671 TTTTACCTGAAACTAACTAATGACGT 57.108 30.769 0.00 0.00 0.00 4.34
568 2421 7.177498 ACTATGTAATGTGTCATATGCAACG 57.823 36.000 0.00 0.00 0.00 4.10
600 2453 2.322161 CACTTGGAAAAGATGCTTGCG 58.678 47.619 0.00 0.00 0.00 4.85
613 2466 4.713321 GGTGAGTAAGTATACCCACTTGGA 59.287 45.833 8.05 0.00 39.81 3.53
688 2541 7.701924 TGCATCCGAATAAAATAGAAGCAAAAG 59.298 33.333 0.00 0.00 29.23 2.27
873 2735 2.413897 GGTTTCTCTCGAGGTCGTACAC 60.414 54.545 13.56 0.89 40.80 2.90
890 2752 5.335191 CGACGACTTACAGTAGGTTAGGTTT 60.335 44.000 0.00 0.00 30.46 3.27
902 2764 2.701073 AGGTTGACGACGACTTACAG 57.299 50.000 0.00 0.00 0.00 2.74
905 2767 5.585844 TGTATGATAGGTTGACGACGACTTA 59.414 40.000 0.00 2.60 0.00 2.24
938 2800 2.313172 GGCTACCATCGAGCATGCG 61.313 63.158 13.01 0.00 41.98 4.73
950 2812 5.540719 AGAGAGAAGGTATTGTATGGCTACC 59.459 44.000 0.00 0.00 36.05 3.18
1029 2897 1.456331 AAGGCACAGCAGCAAGGTT 60.456 52.632 0.00 0.00 35.83 3.50
1095 2963 2.224621 CCCCTTCTTGTTCTTGAGCTCA 60.225 50.000 13.74 13.74 0.00 4.26
1119 2987 3.077359 GTTGGTGACCTTGATGGAGAAG 58.923 50.000 2.11 0.00 39.71 2.85
1158 3026 1.759445 CAATCAGGGACGAGGACAGAT 59.241 52.381 0.00 0.00 0.00 2.90
1204 3079 3.907894 TGCAATACGGGTTCTTGAAAC 57.092 42.857 0.00 0.00 0.00 2.78
1254 3154 3.570125 GGTCAAGTCCCCTGAAAAAGAAG 59.430 47.826 0.00 0.00 0.00 2.85
1255 3155 3.562182 GGTCAAGTCCCCTGAAAAAGAA 58.438 45.455 0.00 0.00 0.00 2.52
1257 3157 1.880027 CGGTCAAGTCCCCTGAAAAAG 59.120 52.381 0.00 0.00 0.00 2.27
1300 3205 1.731709 CTTACAGCGTATGCAGCAACA 59.268 47.619 10.11 0.00 46.23 3.33
1334 3239 3.066760 CCACTTGGAAGGAGTGAAAACAC 59.933 47.826 5.87 0.00 45.72 3.32
1345 3250 6.998074 TGCATATTTATCTACCACTTGGAAGG 59.002 38.462 1.14 0.00 38.94 3.46
1350 3255 9.223099 TCATCATGCATATTTATCTACCACTTG 57.777 33.333 0.00 0.00 0.00 3.16
1351 3256 9.445878 CTCATCATGCATATTTATCTACCACTT 57.554 33.333 0.00 0.00 0.00 3.16
1375 3280 3.059884 TGAATTGAACAGAGACGCACTC 58.940 45.455 2.55 2.55 45.22 3.51
1522 3740 0.509499 CGTGTTGTTGCCGTCGTTAT 59.491 50.000 0.00 0.00 0.00 1.89
1572 3793 6.869388 GCATAGGGTTTCGGTGAAAAATAAAA 59.131 34.615 0.00 0.00 33.14 1.52
1615 3836 9.624697 GCAACAAGATGATTAAATGAGTACAAA 57.375 29.630 0.00 0.00 0.00 2.83
1739 3964 2.202676 CTCTCCGTCGAAGCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
1828 6707 9.558396 AGATCTTTCTGTCATGAAGATTAATCC 57.442 33.333 11.92 0.00 0.00 3.01
1859 6843 0.517316 GATCCGCGAAAACAAGTGCT 59.483 50.000 8.23 0.00 0.00 4.40
2005 6997 1.300311 CCAGTACGCGTGGTTCACA 60.300 57.895 24.59 0.00 33.40 3.58
2179 7171 0.179000 GGACGATCTCCATGTTGGCT 59.821 55.000 0.00 0.00 39.21 4.75
2552 7574 6.357240 CGCTAAAGAAAAGAAAAGAAAGGACG 59.643 38.462 0.00 0.00 0.00 4.79
2558 7580 7.820044 TTTTGCGCTAAAGAAAAGAAAAGAA 57.180 28.000 12.99 0.00 0.00 2.52
2653 7675 3.484683 CAAATCGTATGCGTCCGTTTTT 58.515 40.909 2.37 0.00 39.49 1.94
2669 7691 8.181904 TCCTTATTTAATGGATGAGGCAAATC 57.818 34.615 0.00 0.00 32.04 2.17
2694 7716 5.775195 ACCAGCCTAAAAGCACTTCTAAATT 59.225 36.000 0.00 0.00 34.23 1.82
2700 7722 2.504367 TGACCAGCCTAAAAGCACTTC 58.496 47.619 0.00 0.00 34.23 3.01
2706 7728 3.545703 CCCAGTATGACCAGCCTAAAAG 58.454 50.000 0.00 0.00 39.69 2.27
2712 7734 0.983378 ACTCCCCAGTATGACCAGCC 60.983 60.000 0.00 0.00 39.69 4.85
2713 7735 1.789523 TACTCCCCAGTATGACCAGC 58.210 55.000 0.00 0.00 39.69 4.85
2714 7736 3.375699 AGTTACTCCCCAGTATGACCAG 58.624 50.000 0.00 0.00 39.69 4.00
2715 7737 3.484953 AGTTACTCCCCAGTATGACCA 57.515 47.619 0.00 0.00 39.69 4.02
2717 7739 6.980416 ATCTAAGTTACTCCCCAGTATGAC 57.020 41.667 0.00 0.00 39.69 3.06
2718 7740 8.287350 ACTAATCTAAGTTACTCCCCAGTATGA 58.713 37.037 0.00 0.00 39.69 2.15
2719 7741 8.361139 CACTAATCTAAGTTACTCCCCAGTATG 58.639 40.741 0.00 0.00 34.92 2.39
2720 7742 8.066247 ACACTAATCTAAGTTACTCCCCAGTAT 58.934 37.037 0.00 0.00 34.92 2.12
2721 7743 7.416731 ACACTAATCTAAGTTACTCCCCAGTA 58.583 38.462 0.00 0.00 33.62 2.74
2722 7744 6.262207 ACACTAATCTAAGTTACTCCCCAGT 58.738 40.000 0.00 0.00 36.55 4.00
2723 7745 6.380274 TGACACTAATCTAAGTTACTCCCCAG 59.620 42.308 0.00 0.00 0.00 4.45
2724 7746 6.154021 GTGACACTAATCTAAGTTACTCCCCA 59.846 42.308 0.00 0.00 0.00 4.96
2725 7747 6.380560 AGTGACACTAATCTAAGTTACTCCCC 59.619 42.308 6.24 0.00 0.00 4.81
2726 7748 7.122353 TGAGTGACACTAATCTAAGTTACTCCC 59.878 40.741 8.41 0.00 34.55 4.30
2727 7749 8.053026 TGAGTGACACTAATCTAAGTTACTCC 57.947 38.462 8.41 0.00 34.55 3.85
2733 7755 9.654663 GGTAAAATGAGTGACACTAATCTAAGT 57.345 33.333 8.41 0.00 0.00 2.24
2734 7756 9.877178 AGGTAAAATGAGTGACACTAATCTAAG 57.123 33.333 8.41 0.00 0.00 2.18
2735 7757 9.871238 GAGGTAAAATGAGTGACACTAATCTAA 57.129 33.333 8.41 0.00 0.00 2.10
2736 7758 8.188799 CGAGGTAAAATGAGTGACACTAATCTA 58.811 37.037 8.41 0.00 0.00 1.98
2737 7759 7.036220 CGAGGTAAAATGAGTGACACTAATCT 58.964 38.462 8.41 0.00 0.00 2.40
2738 7760 6.255887 CCGAGGTAAAATGAGTGACACTAATC 59.744 42.308 8.41 0.00 0.00 1.75
2739 7761 6.106673 CCGAGGTAAAATGAGTGACACTAAT 58.893 40.000 8.41 3.40 0.00 1.73
2740 7762 5.475719 CCGAGGTAAAATGAGTGACACTAA 58.524 41.667 8.41 0.36 0.00 2.24
2741 7763 4.081862 CCCGAGGTAAAATGAGTGACACTA 60.082 45.833 8.41 0.00 0.00 2.74
2742 7764 3.306780 CCCGAGGTAAAATGAGTGACACT 60.307 47.826 8.12 8.12 0.00 3.55
2743 7765 3.000727 CCCGAGGTAAAATGAGTGACAC 58.999 50.000 0.00 0.00 0.00 3.67
2744 7766 2.901192 TCCCGAGGTAAAATGAGTGACA 59.099 45.455 0.00 0.00 0.00 3.58
2745 7767 3.604875 TCCCGAGGTAAAATGAGTGAC 57.395 47.619 0.00 0.00 0.00 3.67
2746 7768 3.618997 GCTTCCCGAGGTAAAATGAGTGA 60.619 47.826 0.00 0.00 0.00 3.41
2747 7769 2.678336 GCTTCCCGAGGTAAAATGAGTG 59.322 50.000 0.00 0.00 0.00 3.51
2748 7770 2.677037 CGCTTCCCGAGGTAAAATGAGT 60.677 50.000 0.00 0.00 40.02 3.41
2749 7771 1.933853 CGCTTCCCGAGGTAAAATGAG 59.066 52.381 0.00 0.00 40.02 2.90
2750 7772 2.010043 GCGCTTCCCGAGGTAAAATGA 61.010 52.381 0.00 0.00 40.02 2.57
2751 7773 0.377203 GCGCTTCCCGAGGTAAAATG 59.623 55.000 0.00 0.00 40.02 2.32
2752 7774 0.252197 AGCGCTTCCCGAGGTAAAAT 59.748 50.000 2.64 0.00 40.02 1.82
2753 7775 0.896923 TAGCGCTTCCCGAGGTAAAA 59.103 50.000 18.68 0.00 40.02 1.52
2754 7776 1.117150 ATAGCGCTTCCCGAGGTAAA 58.883 50.000 18.68 0.00 40.02 2.01
2755 7777 0.387929 CATAGCGCTTCCCGAGGTAA 59.612 55.000 18.68 0.00 40.02 2.85
2756 7778 0.754217 ACATAGCGCTTCCCGAGGTA 60.754 55.000 18.68 0.00 40.02 3.08
2757 7779 1.614241 AACATAGCGCTTCCCGAGGT 61.614 55.000 18.68 0.62 40.02 3.85
2758 7780 0.387929 TAACATAGCGCTTCCCGAGG 59.612 55.000 18.68 0.00 40.02 4.63
2759 7781 1.202371 TGTAACATAGCGCTTCCCGAG 60.202 52.381 18.68 1.79 40.02 4.63
2760 7782 0.818938 TGTAACATAGCGCTTCCCGA 59.181 50.000 18.68 0.00 40.02 5.14
2761 7783 1.209128 CTGTAACATAGCGCTTCCCG 58.791 55.000 18.68 4.15 40.75 5.14
2762 7784 2.311124 ACTGTAACATAGCGCTTCCC 57.689 50.000 18.68 0.00 0.00 3.97
2763 7785 4.178540 TGTTACTGTAACATAGCGCTTCC 58.821 43.478 25.14 0.00 43.23 3.46
2783 7805 7.448469 AGAGGTGCTTGAAGTAACAAAATATGT 59.552 33.333 0.30 0.00 46.82 2.29
2784 7806 7.820648 AGAGGTGCTTGAAGTAACAAAATATG 58.179 34.615 0.30 0.00 0.00 1.78
2785 7807 7.885399 AGAGAGGTGCTTGAAGTAACAAAATAT 59.115 33.333 0.30 0.00 0.00 1.28
2786 7808 7.224297 AGAGAGGTGCTTGAAGTAACAAAATA 58.776 34.615 0.30 0.00 0.00 1.40
2787 7809 6.064717 AGAGAGGTGCTTGAAGTAACAAAAT 58.935 36.000 0.30 0.00 0.00 1.82
2788 7810 5.437060 AGAGAGGTGCTTGAAGTAACAAAA 58.563 37.500 0.30 0.00 0.00 2.44
2789 7811 5.036117 AGAGAGGTGCTTGAAGTAACAAA 57.964 39.130 0.30 0.00 0.00 2.83
2790 7812 4.503296 GGAGAGAGGTGCTTGAAGTAACAA 60.503 45.833 0.30 0.00 0.00 2.83
2791 7813 3.006967 GGAGAGAGGTGCTTGAAGTAACA 59.993 47.826 0.30 0.00 0.00 2.41
2792 7814 3.259625 AGGAGAGAGGTGCTTGAAGTAAC 59.740 47.826 0.00 0.00 0.00 2.50
2793 7815 3.511477 AGGAGAGAGGTGCTTGAAGTAA 58.489 45.455 0.00 0.00 0.00 2.24
2794 7816 3.093057 GAGGAGAGAGGTGCTTGAAGTA 58.907 50.000 0.00 0.00 0.00 2.24
2795 7817 1.899142 GAGGAGAGAGGTGCTTGAAGT 59.101 52.381 0.00 0.00 0.00 3.01
2796 7818 1.898472 TGAGGAGAGAGGTGCTTGAAG 59.102 52.381 0.00 0.00 0.00 3.02
2797 7819 2.015456 TGAGGAGAGAGGTGCTTGAA 57.985 50.000 0.00 0.00 0.00 2.69
2798 7820 2.244486 ATGAGGAGAGAGGTGCTTGA 57.756 50.000 0.00 0.00 0.00 3.02
2799 7821 4.478206 TTAATGAGGAGAGAGGTGCTTG 57.522 45.455 0.00 0.00 0.00 4.01
2800 7822 5.707066 ATTTAATGAGGAGAGAGGTGCTT 57.293 39.130 0.00 0.00 0.00 3.91
2801 7823 5.902431 AGTATTTAATGAGGAGAGAGGTGCT 59.098 40.000 0.00 0.00 0.00 4.40
2802 7824 6.168270 AGTATTTAATGAGGAGAGAGGTGC 57.832 41.667 0.00 0.00 0.00 5.01
2803 7825 6.481644 GCAAGTATTTAATGAGGAGAGAGGTG 59.518 42.308 0.00 0.00 0.00 4.00
2804 7826 6.408662 GGCAAGTATTTAATGAGGAGAGAGGT 60.409 42.308 0.00 0.00 0.00 3.85
2805 7827 5.994668 GGCAAGTATTTAATGAGGAGAGAGG 59.005 44.000 0.00 0.00 0.00 3.69
2806 7828 6.481644 GTGGCAAGTATTTAATGAGGAGAGAG 59.518 42.308 0.00 0.00 0.00 3.20
2807 7829 6.070251 TGTGGCAAGTATTTAATGAGGAGAGA 60.070 38.462 0.00 0.00 0.00 3.10
2808 7830 6.115446 TGTGGCAAGTATTTAATGAGGAGAG 58.885 40.000 0.00 0.00 0.00 3.20
2809 7831 6.061022 TGTGGCAAGTATTTAATGAGGAGA 57.939 37.500 0.00 0.00 0.00 3.71
2810 7832 6.949352 ATGTGGCAAGTATTTAATGAGGAG 57.051 37.500 0.00 0.00 0.00 3.69
2811 7833 7.013274 GCTTATGTGGCAAGTATTTAATGAGGA 59.987 37.037 0.00 0.00 0.00 3.71
2812 7834 7.141363 GCTTATGTGGCAAGTATTTAATGAGG 58.859 38.462 0.00 0.00 0.00 3.86
2813 7835 7.706159 TGCTTATGTGGCAAGTATTTAATGAG 58.294 34.615 0.00 0.00 36.71 2.90
2814 7836 7.637631 TGCTTATGTGGCAAGTATTTAATGA 57.362 32.000 0.00 0.00 36.71 2.57
2825 7847 6.817641 CCAAGATAATTTTGCTTATGTGGCAA 59.182 34.615 0.00 0.00 46.12 4.52
2826 7848 6.339730 CCAAGATAATTTTGCTTATGTGGCA 58.660 36.000 0.00 0.00 37.97 4.92
2827 7849 5.754890 CCCAAGATAATTTTGCTTATGTGGC 59.245 40.000 0.00 0.00 29.38 5.01
2828 7850 7.111247 TCCCAAGATAATTTTGCTTATGTGG 57.889 36.000 0.00 0.00 0.00 4.17
2829 7851 8.199449 ACATCCCAAGATAATTTTGCTTATGTG 58.801 33.333 0.00 0.00 0.00 3.21
2830 7852 8.199449 CACATCCCAAGATAATTTTGCTTATGT 58.801 33.333 0.00 0.00 0.00 2.29
2831 7853 8.199449 ACACATCCCAAGATAATTTTGCTTATG 58.801 33.333 0.00 0.00 0.00 1.90
2832 7854 8.310122 ACACATCCCAAGATAATTTTGCTTAT 57.690 30.769 0.00 0.00 0.00 1.73
2833 7855 7.716799 ACACATCCCAAGATAATTTTGCTTA 57.283 32.000 0.00 0.00 0.00 3.09
2834 7856 6.610075 ACACATCCCAAGATAATTTTGCTT 57.390 33.333 0.00 0.00 0.00 3.91
2835 7857 6.610075 AACACATCCCAAGATAATTTTGCT 57.390 33.333 0.00 0.00 0.00 3.91
2836 7858 8.034804 ACTTAACACATCCCAAGATAATTTTGC 58.965 33.333 0.00 0.00 0.00 3.68
2837 7859 9.927668 AACTTAACACATCCCAAGATAATTTTG 57.072 29.630 0.00 0.00 0.00 2.44
2840 7862 9.975218 AGTAACTTAACACATCCCAAGATAATT 57.025 29.630 0.00 0.00 0.00 1.40
2842 7864 9.880157 GTAGTAACTTAACACATCCCAAGATAA 57.120 33.333 0.00 0.00 0.00 1.75
2843 7865 8.480501 GGTAGTAACTTAACACATCCCAAGATA 58.519 37.037 0.00 0.00 0.00 1.98
2844 7866 7.182206 AGGTAGTAACTTAACACATCCCAAGAT 59.818 37.037 0.00 0.00 0.00 2.40
2845 7867 6.499350 AGGTAGTAACTTAACACATCCCAAGA 59.501 38.462 0.00 0.00 0.00 3.02
2846 7868 6.708285 AGGTAGTAACTTAACACATCCCAAG 58.292 40.000 0.00 0.00 0.00 3.61
2847 7869 6.691255 AGGTAGTAACTTAACACATCCCAA 57.309 37.500 0.00 0.00 0.00 4.12
2848 7870 7.455638 ACTTAGGTAGTAACTTAACACATCCCA 59.544 37.037 0.00 0.00 34.56 4.37
2849 7871 7.845037 ACTTAGGTAGTAACTTAACACATCCC 58.155 38.462 0.00 0.00 34.56 3.85
2862 7884 9.584008 CCATAGTGAGGATAACTTAGGTAGTAA 57.416 37.037 0.00 0.00 35.54 2.24
2863 7885 7.668886 GCCATAGTGAGGATAACTTAGGTAGTA 59.331 40.741 0.00 0.00 35.54 1.82
2864 7886 6.494146 GCCATAGTGAGGATAACTTAGGTAGT 59.506 42.308 0.00 0.00 39.32 2.73
2865 7887 6.722129 AGCCATAGTGAGGATAACTTAGGTAG 59.278 42.308 0.00 0.00 28.07 3.18
2866 7888 6.621394 AGCCATAGTGAGGATAACTTAGGTA 58.379 40.000 0.00 0.00 28.07 3.08
2867 7889 5.468658 AGCCATAGTGAGGATAACTTAGGT 58.531 41.667 0.00 0.00 28.07 3.08
2868 7890 6.350612 GCTAGCCATAGTGAGGATAACTTAGG 60.351 46.154 2.29 0.00 28.07 2.69
2869 7891 6.350612 GGCTAGCCATAGTGAGGATAACTTAG 60.351 46.154 29.33 0.00 30.70 2.18
2870 7892 5.480772 GGCTAGCCATAGTGAGGATAACTTA 59.519 44.000 29.33 0.00 30.70 2.24
2871 7893 4.284746 GGCTAGCCATAGTGAGGATAACTT 59.715 45.833 29.33 0.00 30.70 2.66
2872 7894 3.835395 GGCTAGCCATAGTGAGGATAACT 59.165 47.826 29.33 0.00 32.35 2.24
2873 7895 3.835395 AGGCTAGCCATAGTGAGGATAAC 59.165 47.826 34.70 2.35 38.92 1.89
2874 7896 4.133526 AGGCTAGCCATAGTGAGGATAA 57.866 45.455 34.70 0.00 38.92 1.75
2875 7897 3.835478 AGGCTAGCCATAGTGAGGATA 57.165 47.619 34.70 0.00 38.92 2.59
2876 7898 2.711895 AGGCTAGCCATAGTGAGGAT 57.288 50.000 34.70 7.82 38.92 3.24
2877 7899 2.478872 AAGGCTAGCCATAGTGAGGA 57.521 50.000 34.70 0.00 38.92 3.71
2878 7900 2.965831 TGTAAGGCTAGCCATAGTGAGG 59.034 50.000 34.70 0.00 38.92 3.86
2879 7901 4.672587 TTGTAAGGCTAGCCATAGTGAG 57.327 45.455 34.70 0.00 38.92 3.51
2880 7902 4.469945 ACTTTGTAAGGCTAGCCATAGTGA 59.530 41.667 34.70 15.38 38.92 3.41
2881 7903 4.770795 ACTTTGTAAGGCTAGCCATAGTG 58.229 43.478 34.70 19.26 38.92 2.74
2882 7904 6.383147 TCTTACTTTGTAAGGCTAGCCATAGT 59.617 38.462 34.70 23.57 38.92 2.12
2883 7905 6.817184 TCTTACTTTGTAAGGCTAGCCATAG 58.183 40.000 34.70 19.24 38.92 2.23
2884 7906 6.183360 CCTCTTACTTTGTAAGGCTAGCCATA 60.183 42.308 34.70 25.02 38.92 2.74
2885 7907 5.396884 CCTCTTACTTTGTAAGGCTAGCCAT 60.397 44.000 34.70 26.20 38.92 4.40
2886 7908 4.081087 CCTCTTACTTTGTAAGGCTAGCCA 60.081 45.833 34.70 13.55 38.92 4.75
2887 7909 4.161754 TCCTCTTACTTTGTAAGGCTAGCC 59.838 45.833 27.19 27.19 0.00 3.93
2888 7910 5.110598 GTCCTCTTACTTTGTAAGGCTAGC 58.889 45.833 6.04 6.04 0.00 3.42
2889 7911 5.125097 TCGTCCTCTTACTTTGTAAGGCTAG 59.875 44.000 14.90 7.36 0.00 3.42
2890 7912 5.012239 TCGTCCTCTTACTTTGTAAGGCTA 58.988 41.667 14.90 1.80 0.00 3.93
2891 7913 3.830755 TCGTCCTCTTACTTTGTAAGGCT 59.169 43.478 14.90 0.00 0.00 4.58
2892 7914 4.082354 TCTCGTCCTCTTACTTTGTAAGGC 60.082 45.833 14.90 5.47 0.00 4.35
2893 7915 5.640189 TCTCGTCCTCTTACTTTGTAAGG 57.360 43.478 14.90 4.04 0.00 2.69
2894 7916 9.804758 AATATTCTCGTCCTCTTACTTTGTAAG 57.195 33.333 10.28 10.28 0.00 2.34
2897 7919 8.746530 TGTAATATTCTCGTCCTCTTACTTTGT 58.253 33.333 0.00 0.00 0.00 2.83
2898 7920 9.582431 TTGTAATATTCTCGTCCTCTTACTTTG 57.418 33.333 0.00 0.00 0.00 2.77
2899 7921 9.804758 CTTGTAATATTCTCGTCCTCTTACTTT 57.195 33.333 0.00 0.00 0.00 2.66
2900 7922 8.414778 CCTTGTAATATTCTCGTCCTCTTACTT 58.585 37.037 0.00 0.00 0.00 2.24
2901 7923 7.560626 ACCTTGTAATATTCTCGTCCTCTTACT 59.439 37.037 0.00 0.00 0.00 2.24
2902 7924 7.714703 ACCTTGTAATATTCTCGTCCTCTTAC 58.285 38.462 0.00 0.00 0.00 2.34
2903 7925 7.255035 CGACCTTGTAATATTCTCGTCCTCTTA 60.255 40.741 0.00 0.00 0.00 2.10
2904 7926 6.459848 CGACCTTGTAATATTCTCGTCCTCTT 60.460 42.308 0.00 0.00 0.00 2.85
2905 7927 5.008811 CGACCTTGTAATATTCTCGTCCTCT 59.991 44.000 0.00 0.00 0.00 3.69
2906 7928 5.213675 CGACCTTGTAATATTCTCGTCCTC 58.786 45.833 0.00 0.00 0.00 3.71
2907 7929 4.643784 ACGACCTTGTAATATTCTCGTCCT 59.356 41.667 0.00 0.00 0.00 3.85
2908 7930 4.929781 ACGACCTTGTAATATTCTCGTCC 58.070 43.478 0.00 0.00 0.00 4.79
2909 7931 7.192232 AGTAACGACCTTGTAATATTCTCGTC 58.808 38.462 0.00 0.00 32.01 4.20
2910 7932 7.066766 AGAGTAACGACCTTGTAATATTCTCGT 59.933 37.037 0.00 0.00 34.52 4.18
2911 7933 7.416022 AGAGTAACGACCTTGTAATATTCTCG 58.584 38.462 0.00 0.00 0.00 4.04
3022 8047 6.320164 GGTCTTGTGTCATCAGTCTACTCTAT 59.680 42.308 0.00 0.00 0.00 1.98
3085 8111 1.379044 GTTGGCTCCCCTCACCATG 60.379 63.158 0.00 0.00 32.39 3.66
3105 8131 6.700081 CGAGATGAATAGGACAATACGGAAAA 59.300 38.462 0.00 0.00 0.00 2.29
3109 8135 4.217767 TCCGAGATGAATAGGACAATACGG 59.782 45.833 0.00 0.00 37.37 4.02
3124 8150 3.183793 TGGATCAACATGTCCGAGATG 57.816 47.619 0.00 4.01 37.32 2.90
3125 8151 3.912496 TTGGATCAACATGTCCGAGAT 57.088 42.857 0.00 0.60 37.32 2.75
3171 8229 0.176449 GGCATGATCAAGGTTTGGGC 59.824 55.000 0.00 0.00 0.00 5.36
3179 8237 3.072038 TGAGACTATGGGGCATGATCAAG 59.928 47.826 0.00 0.00 0.00 3.02
3212 8270 5.177696 GTCTGCCGGACATATCTTCAAATAC 59.822 44.000 5.05 0.00 43.94 1.89
3230 8291 1.142097 GTAAGCCGAGGAGTCTGCC 59.858 63.158 0.00 0.00 33.56 4.85
3232 8293 2.688446 TGTATGTAAGCCGAGGAGTCTG 59.312 50.000 0.00 0.00 0.00 3.51
3242 8303 3.442625 GGGTTTTGTCCTGTATGTAAGCC 59.557 47.826 0.00 0.00 0.00 4.35
3252 8313 3.859252 GCCAAATTACGGGTTTTGTCCTG 60.859 47.826 0.00 0.00 39.57 3.86
3298 8360 3.482436 ACAAAACTAGATTTGGACCGCA 58.518 40.909 24.20 0.00 43.10 5.69
3311 8373 9.865321 CCTAGTAGTGTTAGCAATACAAAACTA 57.135 33.333 17.54 3.80 45.44 2.24
3330 8392 8.302515 TCTGTGTATAAGGTTTTCCCTAGTAG 57.697 38.462 0.00 0.00 45.47 2.57
3331 8393 8.534496 GTTCTGTGTATAAGGTTTTCCCTAGTA 58.466 37.037 0.00 0.00 45.47 1.82
3332 8394 7.016858 TGTTCTGTGTATAAGGTTTTCCCTAGT 59.983 37.037 0.00 0.00 45.47 2.57
3333 8395 7.391620 TGTTCTGTGTATAAGGTTTTCCCTAG 58.608 38.462 0.00 0.00 45.47 3.02
3334 8396 7.319052 TGTTCTGTGTATAAGGTTTTCCCTA 57.681 36.000 0.00 0.00 45.47 3.53
3336 8398 7.462571 AATGTTCTGTGTATAAGGTTTTCCC 57.537 36.000 0.00 0.00 41.86 3.97
3337 8399 8.182227 GCTAATGTTCTGTGTATAAGGTTTTCC 58.818 37.037 0.00 0.00 41.05 3.13
3338 8400 8.726988 TGCTAATGTTCTGTGTATAAGGTTTTC 58.273 33.333 0.00 0.00 0.00 2.29
3339 8401 8.630054 TGCTAATGTTCTGTGTATAAGGTTTT 57.370 30.769 0.00 0.00 0.00 2.43
3340 8402 8.630054 TTGCTAATGTTCTGTGTATAAGGTTT 57.370 30.769 0.00 0.00 0.00 3.27
3341 8403 8.807948 ATTGCTAATGTTCTGTGTATAAGGTT 57.192 30.769 0.00 0.00 0.00 3.50
3342 8404 9.547753 CTATTGCTAATGTTCTGTGTATAAGGT 57.452 33.333 0.00 0.00 0.00 3.50
3343 8405 8.499162 GCTATTGCTAATGTTCTGTGTATAAGG 58.501 37.037 0.00 0.00 36.03 2.69
3344 8406 8.217115 CGCTATTGCTAATGTTCTGTGTATAAG 58.783 37.037 0.00 0.00 36.97 1.73
3345 8407 7.307160 GCGCTATTGCTAATGTTCTGTGTATAA 60.307 37.037 0.00 0.00 36.97 0.98
3346 8408 6.145534 GCGCTATTGCTAATGTTCTGTGTATA 59.854 38.462 0.00 0.00 36.97 1.47
3347 8409 5.050091 GCGCTATTGCTAATGTTCTGTGTAT 60.050 40.000 0.00 0.00 36.97 2.29
3348 8410 4.270084 GCGCTATTGCTAATGTTCTGTGTA 59.730 41.667 0.00 0.00 36.97 2.90
3349 8411 3.063997 GCGCTATTGCTAATGTTCTGTGT 59.936 43.478 0.00 0.00 36.97 3.72
3350 8412 3.611517 GCGCTATTGCTAATGTTCTGTG 58.388 45.455 0.00 0.00 36.97 3.66
3351 8413 2.285220 CGCGCTATTGCTAATGTTCTGT 59.715 45.455 5.56 0.00 36.97 3.41
3352 8414 2.348872 CCGCGCTATTGCTAATGTTCTG 60.349 50.000 5.56 0.00 36.97 3.02
3353 8415 1.867233 CCGCGCTATTGCTAATGTTCT 59.133 47.619 5.56 0.00 36.97 3.01
3354 8416 1.069906 CCCGCGCTATTGCTAATGTTC 60.070 52.381 5.56 0.00 36.97 3.18
3355 8417 0.944386 CCCGCGCTATTGCTAATGTT 59.056 50.000 5.56 0.00 36.97 2.71
3356 8418 1.507141 GCCCGCGCTATTGCTAATGT 61.507 55.000 5.56 0.00 36.97 2.71
3357 8419 1.207593 GCCCGCGCTATTGCTAATG 59.792 57.895 5.56 0.00 36.97 1.90
3358 8420 0.320374 TAGCCCGCGCTATTGCTAAT 59.680 50.000 5.56 0.00 46.08 1.73
3359 8421 0.105224 TTAGCCCGCGCTATTGCTAA 59.895 50.000 19.12 19.12 46.89 3.09
3360 8422 0.105224 TTTAGCCCGCGCTATTGCTA 59.895 50.000 5.56 9.30 46.89 3.49
3361 8423 0.746563 TTTTAGCCCGCGCTATTGCT 60.747 50.000 5.56 10.36 46.89 3.91
3362 8424 0.099791 TTTTTAGCCCGCGCTATTGC 59.900 50.000 5.56 2.17 46.89 3.56
3363 8425 1.822581 GTTTTTAGCCCGCGCTATTG 58.177 50.000 5.56 0.00 46.89 1.90
3364 8426 0.375803 CGTTTTTAGCCCGCGCTATT 59.624 50.000 5.56 0.00 46.89 1.73
3365 8427 2.011453 CGTTTTTAGCCCGCGCTAT 58.989 52.632 5.56 0.00 46.89 2.97
3366 8428 2.742738 GCGTTTTTAGCCCGCGCTA 61.743 57.895 5.56 0.00 46.08 4.26
3371 8433 1.335935 CAACATGCGTTTTTAGCCCG 58.664 50.000 0.00 0.00 31.13 6.13
3372 8434 1.000394 ACCAACATGCGTTTTTAGCCC 60.000 47.619 0.00 0.00 31.13 5.19
3373 8435 2.058057 CACCAACATGCGTTTTTAGCC 58.942 47.619 0.00 0.00 31.13 3.93
3374 8436 1.455408 GCACCAACATGCGTTTTTAGC 59.545 47.619 0.00 0.00 35.50 3.09
3394 8456 1.154205 ACCGCGCTGCTGCTAATTAG 61.154 55.000 14.03 8.20 36.97 1.73
3395 8457 1.153449 ACCGCGCTGCTGCTAATTA 60.153 52.632 14.03 0.00 36.97 1.40
3396 8458 2.436646 ACCGCGCTGCTGCTAATT 60.437 55.556 14.03 0.00 36.97 1.40
3397 8459 3.197790 CACCGCGCTGCTGCTAAT 61.198 61.111 14.03 0.00 36.97 1.73
3398 8460 4.680237 ACACCGCGCTGCTGCTAA 62.680 61.111 14.03 0.00 36.97 3.09
3399 8461 4.680237 AACACCGCGCTGCTGCTA 62.680 61.111 14.03 0.00 36.97 3.49
3401 8463 2.725275 TTAAAACACCGCGCTGCTGC 62.725 55.000 5.56 5.34 0.00 5.25
3402 8464 0.317436 TTTAAAACACCGCGCTGCTG 60.317 50.000 5.56 2.82 0.00 4.41
3403 8465 0.317519 GTTTAAAACACCGCGCTGCT 60.318 50.000 5.56 0.00 0.00 4.24
3404 8466 1.272784 GGTTTAAAACACCGCGCTGC 61.273 55.000 5.56 0.00 0.00 5.25
3405 8467 2.791092 GGTTTAAAACACCGCGCTG 58.209 52.632 5.56 0.00 0.00 5.18
3411 8473 1.263752 TGTAGCGCGGTTTAAAACACC 59.736 47.619 19.09 0.00 0.00 4.16
3412 8474 2.221517 TCTGTAGCGCGGTTTAAAACAC 59.778 45.455 19.09 7.21 0.00 3.32
3413 8475 2.481854 TCTGTAGCGCGGTTTAAAACA 58.518 42.857 19.09 13.66 0.00 2.83
3414 8476 3.734776 ATCTGTAGCGCGGTTTAAAAC 57.265 42.857 19.09 8.90 0.00 2.43
3415 8477 4.244066 TGTATCTGTAGCGCGGTTTAAAA 58.756 39.130 19.09 0.00 0.00 1.52
3416 8478 3.847542 TGTATCTGTAGCGCGGTTTAAA 58.152 40.909 19.09 0.15 0.00 1.52
3417 8479 3.119388 ACTGTATCTGTAGCGCGGTTTAA 60.119 43.478 19.09 1.06 0.00 1.52
3418 8480 2.424601 ACTGTATCTGTAGCGCGGTTTA 59.575 45.455 19.09 4.92 0.00 2.01
3419 8481 1.203994 ACTGTATCTGTAGCGCGGTTT 59.796 47.619 19.09 0.00 0.00 3.27
3420 8482 0.815734 ACTGTATCTGTAGCGCGGTT 59.184 50.000 19.09 0.00 0.00 4.44
3421 8483 0.815734 AACTGTATCTGTAGCGCGGT 59.184 50.000 17.70 17.70 0.00 5.68
3422 8484 2.768833 TAACTGTATCTGTAGCGCGG 57.231 50.000 8.83 0.00 0.00 6.46
3423 8485 3.846896 GCTATAACTGTATCTGTAGCGCG 59.153 47.826 0.00 0.00 0.00 6.86
3424 8486 4.795268 TGCTATAACTGTATCTGTAGCGC 58.205 43.478 0.00 0.00 37.85 5.92
3425 8487 6.003234 ACTGCTATAACTGTATCTGTAGCG 57.997 41.667 0.00 0.00 37.85 4.26
3426 8488 7.024768 GCTACTGCTATAACTGTATCTGTAGC 58.975 42.308 11.31 11.31 41.06 3.58
3427 8489 7.237871 CGCTACTGCTATAACTGTATCTGTAG 58.762 42.308 0.00 0.00 36.97 2.74
3428 8490 6.348295 GCGCTACTGCTATAACTGTATCTGTA 60.348 42.308 0.00 0.00 36.97 2.74
3429 8491 5.563085 GCGCTACTGCTATAACTGTATCTGT 60.563 44.000 0.00 0.00 36.97 3.41
3430 8492 4.854291 GCGCTACTGCTATAACTGTATCTG 59.146 45.833 0.00 0.00 36.97 2.90
3431 8493 4.378563 CGCGCTACTGCTATAACTGTATCT 60.379 45.833 5.56 0.00 36.97 1.98
3432 8494 3.846896 CGCGCTACTGCTATAACTGTATC 59.153 47.826 5.56 0.00 36.97 2.24
3433 8495 3.822996 CGCGCTACTGCTATAACTGTAT 58.177 45.455 5.56 0.00 36.97 2.29
3434 8496 2.603892 GCGCGCTACTGCTATAACTGTA 60.604 50.000 26.67 0.00 36.97 2.74
3435 8497 1.864435 GCGCGCTACTGCTATAACTGT 60.864 52.381 26.67 0.00 36.97 3.55
3436 8498 0.778815 GCGCGCTACTGCTATAACTG 59.221 55.000 26.67 0.00 36.97 3.16
3437 8499 0.318784 GGCGCGCTACTGCTATAACT 60.319 55.000 32.29 0.00 36.97 2.24
3438 8500 1.282930 GGGCGCGCTACTGCTATAAC 61.283 60.000 32.29 9.16 36.97 1.89
3439 8501 1.006571 GGGCGCGCTACTGCTATAA 60.007 57.895 32.29 0.00 36.97 0.98
3440 8502 2.649034 GGGCGCGCTACTGCTATA 59.351 61.111 32.29 0.00 36.97 1.31
3441 8503 4.647615 CGGGCGCGCTACTGCTAT 62.648 66.667 32.29 0.00 36.97 2.97
3445 8507 3.884350 TACTCGGGCGCGCTACTG 61.884 66.667 32.29 20.22 0.00 2.74
3446 8508 3.885521 GTACTCGGGCGCGCTACT 61.886 66.667 32.29 11.52 0.00 2.57
3447 8509 3.688475 TTGTACTCGGGCGCGCTAC 62.688 63.158 32.29 23.88 0.00 3.58
3448 8510 2.489539 TTTTGTACTCGGGCGCGCTA 62.490 55.000 32.29 12.42 0.00 4.26
3449 8511 3.869473 TTTTGTACTCGGGCGCGCT 62.869 57.895 32.29 13.63 0.00 5.92
3450 8512 3.362851 CTTTTGTACTCGGGCGCGC 62.363 63.158 25.94 25.94 0.00 6.86
3451 8513 2.776072 CTTTTGTACTCGGGCGCG 59.224 61.111 18.21 18.21 0.00 6.86
3452 8514 2.479198 GCTTTTGTACTCGGGCGC 59.521 61.111 0.00 0.00 0.00 6.53
3453 8515 2.776072 CGCTTTTGTACTCGGGCG 59.224 61.111 8.72 8.72 36.89 6.13
3454 8516 0.738412 TAGCGCTTTTGTACTCGGGC 60.738 55.000 18.68 0.19 35.82 6.13
3455 8517 0.997196 GTAGCGCTTTTGTACTCGGG 59.003 55.000 18.68 0.00 0.00 5.14
3456 8518 1.992170 AGTAGCGCTTTTGTACTCGG 58.008 50.000 18.68 0.00 0.00 4.63
3457 8519 3.756069 AGTAGTAGCGCTTTTGTACTCG 58.244 45.455 18.68 0.00 0.00 4.18
3458 8520 7.572502 TTTTAGTAGTAGCGCTTTTGTACTC 57.427 36.000 18.68 6.90 0.00 2.59
3459 8521 8.543862 AATTTTAGTAGTAGCGCTTTTGTACT 57.456 30.769 18.68 15.69 0.00 2.73
3460 8522 7.901889 GGAATTTTAGTAGTAGCGCTTTTGTAC 59.098 37.037 18.68 7.31 0.00 2.90
3461 8523 7.064966 GGGAATTTTAGTAGTAGCGCTTTTGTA 59.935 37.037 18.68 0.00 0.00 2.41
3462 8524 6.128090 GGGAATTTTAGTAGTAGCGCTTTTGT 60.128 38.462 18.68 0.00 0.00 2.83
3463 8525 6.128117 TGGGAATTTTAGTAGTAGCGCTTTTG 60.128 38.462 18.68 0.00 0.00 2.44
3464 8526 5.941647 TGGGAATTTTAGTAGTAGCGCTTTT 59.058 36.000 18.68 6.95 0.00 2.27
3465 8527 5.493809 TGGGAATTTTAGTAGTAGCGCTTT 58.506 37.500 18.68 7.38 0.00 3.51
3466 8528 5.093849 TGGGAATTTTAGTAGTAGCGCTT 57.906 39.130 18.68 0.00 0.00 4.68
3467 8529 4.748277 TGGGAATTTTAGTAGTAGCGCT 57.252 40.909 17.26 17.26 0.00 5.92
3468 8530 4.213482 CCATGGGAATTTTAGTAGTAGCGC 59.787 45.833 2.85 0.00 0.00 5.92
3469 8531 4.213482 GCCATGGGAATTTTAGTAGTAGCG 59.787 45.833 15.13 0.00 0.00 4.26
3470 8532 5.377478 AGCCATGGGAATTTTAGTAGTAGC 58.623 41.667 15.13 0.00 0.00 3.58
3471 8533 7.173390 GCTAAGCCATGGGAATTTTAGTAGTAG 59.827 40.741 15.13 0.00 0.00 2.57
3472 8534 6.996282 GCTAAGCCATGGGAATTTTAGTAGTA 59.004 38.462 15.13 0.00 0.00 1.82
3473 8535 5.828328 GCTAAGCCATGGGAATTTTAGTAGT 59.172 40.000 15.13 0.00 0.00 2.73
3474 8536 6.319141 GCTAAGCCATGGGAATTTTAGTAG 57.681 41.667 15.13 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.