Multiple sequence alignment - TraesCS2A01G343000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G343000 chr2A 100.000 2543 0 0 1 2543 579970900 579973442 0.000000e+00 4697.0
1 TraesCS2A01G343000 chr2A 87.968 507 58 3 1836 2342 764340456 764340959 1.680000e-166 595.0
2 TraesCS2A01G343000 chr2D 88.279 1766 76 53 3 1705 412831420 412833117 0.000000e+00 1993.0
3 TraesCS2A01G343000 chr2D 90.414 532 49 1 1811 2342 131117177 131117706 0.000000e+00 699.0
4 TraesCS2A01G343000 chr2D 90.119 506 48 2 1837 2342 446309778 446309275 0.000000e+00 656.0
5 TraesCS2A01G343000 chr2D 87.524 529 61 4 1814 2342 642264880 642264357 7.780000e-170 606.0
6 TraesCS2A01G343000 chr2B 85.294 986 51 31 16 942 486116109 486117059 0.000000e+00 931.0
7 TraesCS2A01G343000 chr2B 87.135 754 37 23 981 1705 486117060 486117782 0.000000e+00 800.0
8 TraesCS2A01G343000 chr2B 79.133 369 27 16 16 338 526383297 526382933 2.560000e-50 209.0
9 TraesCS2A01G343000 chr6B 88.707 549 53 5 1802 2342 697731421 697730874 0.000000e+00 662.0
10 TraesCS2A01G343000 chr6B 95.238 42 2 0 1772 1813 697731516 697731475 1.630000e-07 67.6
11 TraesCS2A01G343000 chr6A 87.970 532 64 0 1811 2342 604931196 604931727 1.660000e-176 628.0
12 TraesCS2A01G343000 chr6A 97.297 37 1 0 1772 1808 21937815 21937779 2.110000e-06 63.9
13 TraesCS2A01G343000 chr6A 92.857 42 3 0 1772 1813 143447868 143447909 7.600000e-06 62.1
14 TraesCS2A01G343000 chr1B 88.976 508 50 6 1836 2342 454376732 454376230 7.730000e-175 623.0
15 TraesCS2A01G343000 chr6D 87.843 510 60 2 1833 2342 438816205 438816712 4.680000e-167 597.0
16 TraesCS2A01G343000 chr6D 95.025 201 10 0 2343 2543 451927616 451927416 1.470000e-82 316.0
17 TraesCS2A01G343000 chr6D 94.975 199 9 1 2345 2543 346218989 346218792 6.830000e-81 311.0
18 TraesCS2A01G343000 chr6D 94.527 201 11 0 2343 2543 451931979 451931779 6.830000e-81 311.0
19 TraesCS2A01G343000 chr6D 94.527 201 10 1 2343 2543 13270932 13271131 2.460000e-80 309.0
20 TraesCS2A01G343000 chr6D 94.089 203 12 0 2341 2543 222699433 222699231 2.460000e-80 309.0
21 TraesCS2A01G343000 chr6D 93.689 206 11 2 2339 2543 308552105 308551901 8.840000e-80 307.0
22 TraesCS2A01G343000 chr6D 100.000 34 0 0 1776 1809 322833536 322833503 2.110000e-06 63.9
23 TraesCS2A01G343000 chr7A 87.380 523 59 6 1820 2342 18946108 18946623 6.060000e-166 593.0
24 TraesCS2A01G343000 chr3D 95.522 201 8 1 2343 2543 474990148 474990347 1.140000e-83 320.0
25 TraesCS2A01G343000 chr3D 100.000 34 0 0 1776 1809 69917059 69917026 2.110000e-06 63.9
26 TraesCS2A01G343000 chr5D 94.527 201 11 0 2343 2543 356703490 356703290 6.830000e-81 311.0
27 TraesCS2A01G343000 chr5D 94.527 201 11 0 2343 2543 403911531 403911331 6.830000e-81 311.0
28 TraesCS2A01G343000 chr1D 95.238 42 2 0 1772 1813 31406837 31406796 1.630000e-07 67.6
29 TraesCS2A01G343000 chr7D 97.368 38 1 0 1776 1813 149848121 149848084 5.870000e-07 65.8
30 TraesCS2A01G343000 chr3B 97.368 38 1 0 1776 1813 655019637 655019600 5.870000e-07 65.8
31 TraesCS2A01G343000 chr1A 97.297 37 1 0 1773 1809 5097803 5097839 2.110000e-06 63.9
32 TraesCS2A01G343000 chr4B 100.000 33 0 0 1776 1808 28669934 28669966 7.600000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G343000 chr2A 579970900 579973442 2542 False 4697.0 4697 100.0000 1 2543 1 chr2A.!!$F1 2542
1 TraesCS2A01G343000 chr2A 764340456 764340959 503 False 595.0 595 87.9680 1836 2342 1 chr2A.!!$F2 506
2 TraesCS2A01G343000 chr2D 412831420 412833117 1697 False 1993.0 1993 88.2790 3 1705 1 chr2D.!!$F2 1702
3 TraesCS2A01G343000 chr2D 131117177 131117706 529 False 699.0 699 90.4140 1811 2342 1 chr2D.!!$F1 531
4 TraesCS2A01G343000 chr2D 446309275 446309778 503 True 656.0 656 90.1190 1837 2342 1 chr2D.!!$R1 505
5 TraesCS2A01G343000 chr2D 642264357 642264880 523 True 606.0 606 87.5240 1814 2342 1 chr2D.!!$R2 528
6 TraesCS2A01G343000 chr2B 486116109 486117782 1673 False 865.5 931 86.2145 16 1705 2 chr2B.!!$F1 1689
7 TraesCS2A01G343000 chr6B 697730874 697731516 642 True 364.8 662 91.9725 1772 2342 2 chr6B.!!$R1 570
8 TraesCS2A01G343000 chr6A 604931196 604931727 531 False 628.0 628 87.9700 1811 2342 1 chr6A.!!$F2 531
9 TraesCS2A01G343000 chr1B 454376230 454376732 502 True 623.0 623 88.9760 1836 2342 1 chr1B.!!$R1 506
10 TraesCS2A01G343000 chr6D 438816205 438816712 507 False 597.0 597 87.8430 1833 2342 1 chr6D.!!$F2 509
11 TraesCS2A01G343000 chr7A 18946108 18946623 515 False 593.0 593 87.3800 1820 2342 1 chr7A.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 738 0.437295 GCATAAATACGTAGCGGGCG 59.563 55.0 0.08 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2467 2675 0.038892 ACGACTACATCAACCGCGTT 60.039 50.0 4.92 0.0 0.0 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 2.270434 TCAGTTCATAGCCCCCTTCT 57.730 50.000 0.00 0.00 0.00 2.85
95 96 1.561542 CAGTTCATAGCCCCCTTCTGT 59.438 52.381 0.00 0.00 0.00 3.41
136 153 2.367241 TGCACAGTAGTTGTTAGCTGGA 59.633 45.455 0.00 0.00 38.16 3.86
138 155 3.433615 GCACAGTAGTTGTTAGCTGGAAG 59.566 47.826 0.00 0.00 38.16 3.46
139 156 4.799586 GCACAGTAGTTGTTAGCTGGAAGA 60.800 45.833 0.00 0.00 38.16 2.87
140 157 4.926238 CACAGTAGTTGTTAGCTGGAAGAG 59.074 45.833 0.00 0.00 38.16 2.85
141 158 4.561734 ACAGTAGTTGTTAGCTGGAAGAGC 60.562 45.833 0.00 0.00 42.35 4.09
142 159 7.533177 ACAGTAGTTGTTAGCTGGAAGAGCC 62.533 48.000 0.00 0.00 42.80 4.70
193 210 3.307480 CCCCACGAACTCAACCTAATTCT 60.307 47.826 0.00 0.00 0.00 2.40
200 217 7.495934 CACGAACTCAACCTAATTCTATCCATT 59.504 37.037 0.00 0.00 0.00 3.16
367 451 1.334869 GGCTTGACCAGAGTTGTTGTG 59.665 52.381 0.00 0.00 38.86 3.33
460 544 2.429907 GATCGATCGCGCTCAGGG 60.430 66.667 11.09 0.00 37.46 4.45
500 585 4.740268 CGGAGCAGTGTTACAGTATTACA 58.260 43.478 0.00 0.00 0.00 2.41
501 586 5.348986 CGGAGCAGTGTTACAGTATTACAT 58.651 41.667 0.00 0.00 0.00 2.29
502 587 6.500910 CGGAGCAGTGTTACAGTATTACATA 58.499 40.000 0.00 0.00 0.00 2.29
650 738 0.437295 GCATAAATACGTAGCGGGCG 59.563 55.000 0.08 0.00 0.00 6.13
685 773 2.095212 TCGATCACACACTGTCTGCTAC 60.095 50.000 0.00 0.00 0.00 3.58
686 774 2.095008 CGATCACACACTGTCTGCTACT 60.095 50.000 0.00 0.00 0.00 2.57
687 775 3.127030 CGATCACACACTGTCTGCTACTA 59.873 47.826 0.00 0.00 0.00 1.82
796 888 5.466728 CACTCCGATCCACTGTTATTTATGG 59.533 44.000 0.00 0.00 0.00 2.74
826 918 2.507992 GCACGCGCATCTCAGTCT 60.508 61.111 5.73 0.00 38.36 3.24
827 919 2.512301 GCACGCGCATCTCAGTCTC 61.512 63.158 5.73 0.00 38.36 3.36
942 1040 4.501400 GCTCTCTAGCTTCCTCAATTCCTC 60.501 50.000 0.00 0.00 45.85 3.71
943 1041 3.964031 TCTCTAGCTTCCTCAATTCCTCC 59.036 47.826 0.00 0.00 0.00 4.30
944 1042 3.708631 CTCTAGCTTCCTCAATTCCTCCA 59.291 47.826 0.00 0.00 0.00 3.86
945 1043 2.797177 AGCTTCCTCAATTCCTCCAC 57.203 50.000 0.00 0.00 0.00 4.02
946 1044 1.988107 AGCTTCCTCAATTCCTCCACA 59.012 47.619 0.00 0.00 0.00 4.17
947 1045 2.026449 AGCTTCCTCAATTCCTCCACAG 60.026 50.000 0.00 0.00 0.00 3.66
948 1046 2.026822 GCTTCCTCAATTCCTCCACAGA 60.027 50.000 0.00 0.00 0.00 3.41
949 1047 3.604582 CTTCCTCAATTCCTCCACAGAC 58.395 50.000 0.00 0.00 0.00 3.51
950 1048 1.550524 TCCTCAATTCCTCCACAGACG 59.449 52.381 0.00 0.00 0.00 4.18
951 1049 1.406069 CCTCAATTCCTCCACAGACGG 60.406 57.143 0.00 0.00 0.00 4.79
952 1050 0.613260 TCAATTCCTCCACAGACGGG 59.387 55.000 0.00 0.00 0.00 5.28
953 1051 1.026718 CAATTCCTCCACAGACGGGC 61.027 60.000 0.00 0.00 0.00 6.13
1121 1232 0.036732 CCAAGTAAGCCAGCCAGTCA 59.963 55.000 0.00 0.00 0.00 3.41
1122 1233 1.446907 CAAGTAAGCCAGCCAGTCAG 58.553 55.000 0.00 0.00 0.00 3.51
1125 1236 0.321671 GTAAGCCAGCCAGTCAGTCA 59.678 55.000 0.00 0.00 0.00 3.41
1126 1237 1.055849 TAAGCCAGCCAGTCAGTCAA 58.944 50.000 0.00 0.00 0.00 3.18
1131 1243 1.609061 CCAGCCAGTCAGTCAATCGTT 60.609 52.381 0.00 0.00 0.00 3.85
1138 1250 0.948623 TCAGTCAATCGTTGCGTGGG 60.949 55.000 0.00 0.00 0.00 4.61
1140 1252 2.031919 TCAATCGTTGCGTGGGCT 59.968 55.556 0.00 0.00 40.82 5.19
1144 1256 2.495366 AATCGTTGCGTGGGCTCGTA 62.495 55.000 4.87 0.00 40.82 3.43
1189 1301 3.164479 ACCAGCAGCTGACATGGT 58.836 55.556 24.90 24.86 41.22 3.55
1190 1302 1.567357 TACCAGCAGCTGACATGGTA 58.433 50.000 28.27 28.27 44.15 3.25
1297 1409 2.646175 GCAGGCCAGGACGACTACA 61.646 63.158 5.01 0.00 0.00 2.74
1302 1420 0.680280 GCCAGGACGACTACAGAGGA 60.680 60.000 0.00 0.00 0.00 3.71
1314 1432 3.474570 AGAGGACAGGCGGCATCC 61.475 66.667 20.72 20.72 0.00 3.51
1327 1445 1.728490 GGCATCCCCGTCAAATCAGC 61.728 60.000 0.00 0.00 0.00 4.26
1511 1644 2.436469 CTACCGCTGCATGTGCCA 60.436 61.111 0.00 0.00 41.18 4.92
1594 1727 2.431942 CGGTCGCGCCACTACTTT 60.432 61.111 17.57 0.00 36.97 2.66
1595 1728 2.025418 CGGTCGCGCCACTACTTTT 61.025 57.895 17.57 0.00 36.97 2.27
1596 1729 0.733566 CGGTCGCGCCACTACTTTTA 60.734 55.000 17.57 0.00 36.97 1.52
1597 1730 0.997196 GGTCGCGCCACTACTTTTAG 59.003 55.000 13.61 0.00 37.17 1.85
1598 1731 1.670967 GGTCGCGCCACTACTTTTAGT 60.671 52.381 13.61 0.00 39.30 2.24
1599 1732 1.652619 GTCGCGCCACTACTTTTAGTC 59.347 52.381 0.00 0.00 36.31 2.59
1600 1733 1.542915 TCGCGCCACTACTTTTAGTCT 59.457 47.619 0.00 0.00 36.31 3.24
1601 1734 2.029649 TCGCGCCACTACTTTTAGTCTT 60.030 45.455 0.00 0.00 36.31 3.01
1618 1751 5.402997 AGTCTTTTACCGTTTAGCTAGCT 57.597 39.130 23.12 23.12 0.00 3.32
1642 1775 5.843673 TGTGATTTTGCTCTTGTTTGGTA 57.156 34.783 0.00 0.00 0.00 3.25
1644 1777 6.446318 TGTGATTTTGCTCTTGTTTGGTATC 58.554 36.000 0.00 0.00 0.00 2.24
1712 1848 9.953697 GTATGTAAAAGTTAATGTGGTTTGTCA 57.046 29.630 0.00 0.00 0.00 3.58
1714 1850 9.877178 ATGTAAAAGTTAATGTGGTTTGTCAAA 57.123 25.926 0.00 0.00 0.00 2.69
1715 1851 9.706691 TGTAAAAGTTAATGTGGTTTGTCAAAA 57.293 25.926 0.00 0.00 0.00 2.44
1739 1875 6.481954 AAGAGAGTAAAAGTTAATGTGCCG 57.518 37.500 0.00 0.00 0.00 5.69
1740 1876 4.392138 AGAGAGTAAAAGTTAATGTGCCGC 59.608 41.667 0.00 0.00 0.00 6.53
1741 1877 3.124636 AGAGTAAAAGTTAATGTGCCGCG 59.875 43.478 0.00 0.00 0.00 6.46
1742 1878 2.160813 AGTAAAAGTTAATGTGCCGCGG 59.839 45.455 24.05 24.05 0.00 6.46
1743 1879 0.242555 AAAAGTTAATGTGCCGCGGG 59.757 50.000 29.38 8.95 0.00 6.13
1744 1880 1.591504 AAAGTTAATGTGCCGCGGGG 61.592 55.000 29.38 15.40 0.00 5.73
1745 1881 3.514362 GTTAATGTGCCGCGGGGG 61.514 66.667 29.38 6.75 39.58 5.40
1746 1882 3.718395 TTAATGTGCCGCGGGGGA 61.718 61.111 29.38 15.82 38.47 4.81
1747 1883 3.690685 TTAATGTGCCGCGGGGGAG 62.691 63.158 29.38 0.00 38.47 4.30
1754 1890 2.840102 CCGCGGGGGAGAAGAGAT 60.840 66.667 20.10 0.00 38.47 2.75
1755 1891 2.435693 CCGCGGGGGAGAAGAGATT 61.436 63.158 20.10 0.00 38.47 2.40
1756 1892 1.227380 CGCGGGGGAGAAGAGATTG 60.227 63.158 0.00 0.00 0.00 2.67
1757 1893 1.147153 GCGGGGGAGAAGAGATTGG 59.853 63.158 0.00 0.00 0.00 3.16
1758 1894 1.627297 GCGGGGGAGAAGAGATTGGT 61.627 60.000 0.00 0.00 0.00 3.67
1759 1895 0.179000 CGGGGGAGAAGAGATTGGTG 59.821 60.000 0.00 0.00 0.00 4.17
1760 1896 1.290134 GGGGGAGAAGAGATTGGTGT 58.710 55.000 0.00 0.00 0.00 4.16
1761 1897 1.065126 GGGGGAGAAGAGATTGGTGTG 60.065 57.143 0.00 0.00 0.00 3.82
1762 1898 1.630878 GGGGAGAAGAGATTGGTGTGT 59.369 52.381 0.00 0.00 0.00 3.72
1763 1899 2.355209 GGGGAGAAGAGATTGGTGTGTC 60.355 54.545 0.00 0.00 0.00 3.67
1764 1900 2.611518 GGAGAAGAGATTGGTGTGTCG 58.388 52.381 0.00 0.00 0.00 4.35
1765 1901 1.996191 GAGAAGAGATTGGTGTGTCGC 59.004 52.381 0.00 0.00 0.00 5.19
1766 1902 0.716108 GAAGAGATTGGTGTGTCGCG 59.284 55.000 0.00 0.00 0.00 5.87
1767 1903 0.670546 AAGAGATTGGTGTGTCGCGG 60.671 55.000 6.13 0.00 0.00 6.46
1768 1904 2.740714 GAGATTGGTGTGTCGCGGC 61.741 63.158 2.29 2.29 0.00 6.53
1769 1905 3.047280 GATTGGTGTGTCGCGGCA 61.047 61.111 10.57 10.57 0.00 5.69
1770 1906 3.308878 GATTGGTGTGTCGCGGCAC 62.309 63.158 35.41 35.41 39.65 5.01
1774 1910 4.961511 GTGTGTCGCGGCACCTGA 62.962 66.667 37.81 19.68 38.52 3.86
1826 2028 0.899720 ACAGCGTTTCTTCCCCGATA 59.100 50.000 0.00 0.00 0.00 2.92
1827 2029 1.276989 ACAGCGTTTCTTCCCCGATAA 59.723 47.619 0.00 0.00 0.00 1.75
1831 2033 0.656259 GTTTCTTCCCCGATAAGCGC 59.344 55.000 0.00 0.00 39.11 5.92
1865 2067 2.665185 GCTGTTCGTCTTGGGCGT 60.665 61.111 0.00 0.00 0.00 5.68
1924 2126 2.107953 GCTGCTAGGCTTCGAGGG 59.892 66.667 0.00 0.00 0.00 4.30
1970 2172 4.783621 GCTCGCAGGGTCATGGCA 62.784 66.667 0.00 0.00 0.00 4.92
2074 2276 3.072468 CTCGGGCTTCCCACGGTA 61.072 66.667 2.47 0.00 45.83 4.02
2105 2307 3.160585 CAGTCCCTGTCCAAGGCA 58.839 61.111 0.00 0.00 45.89 4.75
2111 2313 1.008327 TCCCTGTCCAAGGCAGATCTA 59.992 52.381 0.00 0.00 45.89 1.98
2113 2315 1.139853 CCTGTCCAAGGCAGATCTACC 59.860 57.143 3.48 3.48 39.93 3.18
2144 2346 3.661944 TCGTGGTTTTTGCTACGGATTA 58.338 40.909 0.00 0.00 42.33 1.75
2150 2358 5.049267 TGGTTTTTGCTACGGATTAGTTCAC 60.049 40.000 0.00 0.00 0.00 3.18
2170 2378 1.064654 CATCAGAGACGATGACGAGCA 59.935 52.381 0.00 0.00 44.67 4.26
2173 2381 1.098869 AGAGACGATGACGAGCATGT 58.901 50.000 0.00 0.00 42.66 3.21
2174 2382 2.032178 CAGAGACGATGACGAGCATGTA 59.968 50.000 0.00 0.00 42.66 2.29
2284 2492 1.381191 TGCATCAGGGCTCCTACGA 60.381 57.895 0.00 0.00 29.64 3.43
2319 2527 1.673808 GGTTGGTCGCCGGATCTAGT 61.674 60.000 5.05 0.00 0.00 2.57
2338 2546 1.000717 GTCGGCTAGATCTGGAGCTTC 60.001 57.143 15.44 1.61 38.79 3.86
2342 2550 2.298729 GGCTAGATCTGGAGCTTCGAAT 59.701 50.000 15.44 0.00 38.79 3.34
2343 2551 3.316283 GCTAGATCTGGAGCTTCGAATG 58.684 50.000 10.75 0.00 35.73 2.67
2344 2552 3.243704 GCTAGATCTGGAGCTTCGAATGT 60.244 47.826 10.75 0.00 35.73 2.71
2345 2553 3.902881 AGATCTGGAGCTTCGAATGTT 57.097 42.857 0.00 0.00 0.00 2.71
2346 2554 3.529533 AGATCTGGAGCTTCGAATGTTG 58.470 45.455 0.00 0.00 0.00 3.33
2347 2555 2.099141 TCTGGAGCTTCGAATGTTGG 57.901 50.000 0.00 0.00 0.00 3.77
2348 2556 1.089920 CTGGAGCTTCGAATGTTGGG 58.910 55.000 0.00 0.00 0.00 4.12
2349 2557 0.322456 TGGAGCTTCGAATGTTGGGG 60.322 55.000 0.00 0.00 0.00 4.96
2350 2558 0.035439 GGAGCTTCGAATGTTGGGGA 60.035 55.000 0.00 0.00 0.00 4.81
2351 2559 1.613255 GGAGCTTCGAATGTTGGGGAA 60.613 52.381 0.00 0.00 0.00 3.97
2352 2560 1.468914 GAGCTTCGAATGTTGGGGAAC 59.531 52.381 0.00 0.00 0.00 3.62
2353 2561 0.168128 GCTTCGAATGTTGGGGAACG 59.832 55.000 0.00 0.00 0.00 3.95
2354 2562 1.519408 CTTCGAATGTTGGGGAACGT 58.481 50.000 0.00 0.00 0.00 3.99
2355 2563 2.690786 CTTCGAATGTTGGGGAACGTA 58.309 47.619 0.00 0.00 0.00 3.57
2356 2564 2.373540 TCGAATGTTGGGGAACGTAG 57.626 50.000 0.00 0.00 0.00 3.51
2358 2566 1.730064 CGAATGTTGGGGAACGTAGTG 59.270 52.381 0.00 0.00 45.00 2.74
2359 2567 2.610976 CGAATGTTGGGGAACGTAGTGA 60.611 50.000 0.00 0.00 45.00 3.41
2360 2568 3.606687 GAATGTTGGGGAACGTAGTGAT 58.393 45.455 0.00 0.00 45.00 3.06
2361 2569 3.713826 ATGTTGGGGAACGTAGTGATT 57.286 42.857 0.00 0.00 45.00 2.57
2362 2570 3.495434 TGTTGGGGAACGTAGTGATTT 57.505 42.857 0.00 0.00 45.00 2.17
2363 2571 3.404899 TGTTGGGGAACGTAGTGATTTC 58.595 45.455 0.00 0.00 45.00 2.17
2364 2572 3.181453 TGTTGGGGAACGTAGTGATTTCA 60.181 43.478 0.00 0.00 45.00 2.69
2365 2573 3.773418 TGGGGAACGTAGTGATTTCAA 57.227 42.857 0.00 0.00 45.00 2.69
2366 2574 4.088056 TGGGGAACGTAGTGATTTCAAA 57.912 40.909 0.00 0.00 45.00 2.69
2367 2575 4.462133 TGGGGAACGTAGTGATTTCAAAA 58.538 39.130 0.00 0.00 45.00 2.44
2368 2576 4.888239 TGGGGAACGTAGTGATTTCAAAAA 59.112 37.500 0.00 0.00 45.00 1.94
2385 2593 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
2386 2594 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
2387 2595 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
2388 2596 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
2389 2597 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
2390 2598 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
2391 2599 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
2392 2600 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
2393 2601 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
2394 2602 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
2395 2603 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
2396 2604 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
2397 2605 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
2398 2606 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
2399 2607 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
2400 2608 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
2401 2609 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
2402 2610 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
2403 2611 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
2404 2612 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
2405 2613 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
2406 2614 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
2407 2615 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
2408 2616 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
2409 2617 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
2410 2618 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
2411 2619 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
2412 2620 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
2413 2621 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
2414 2622 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
2415 2623 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
2416 2624 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
2417 2625 1.069204 GATGCATAGCAACGAGAGGGA 59.931 52.381 0.00 0.00 43.62 4.20
2418 2626 0.901827 TGCATAGCAACGAGAGGGAA 59.098 50.000 0.00 0.00 34.76 3.97
2419 2627 1.134699 TGCATAGCAACGAGAGGGAAG 60.135 52.381 0.00 0.00 34.76 3.46
2420 2628 1.137086 GCATAGCAACGAGAGGGAAGA 59.863 52.381 0.00 0.00 0.00 2.87
2421 2629 2.801342 GCATAGCAACGAGAGGGAAGAG 60.801 54.545 0.00 0.00 0.00 2.85
2422 2630 2.217510 TAGCAACGAGAGGGAAGAGT 57.782 50.000 0.00 0.00 0.00 3.24
2423 2631 2.217510 AGCAACGAGAGGGAAGAGTA 57.782 50.000 0.00 0.00 0.00 2.59
2424 2632 2.741145 AGCAACGAGAGGGAAGAGTAT 58.259 47.619 0.00 0.00 0.00 2.12
2425 2633 3.100671 AGCAACGAGAGGGAAGAGTATT 58.899 45.455 0.00 0.00 0.00 1.89
2426 2634 3.118956 AGCAACGAGAGGGAAGAGTATTG 60.119 47.826 0.00 0.00 0.00 1.90
2427 2635 3.368531 GCAACGAGAGGGAAGAGTATTGT 60.369 47.826 0.00 0.00 0.00 2.71
2428 2636 4.425520 CAACGAGAGGGAAGAGTATTGTC 58.574 47.826 0.00 0.00 0.00 3.18
2429 2637 3.970842 ACGAGAGGGAAGAGTATTGTCT 58.029 45.455 0.00 0.00 0.00 3.41
2430 2638 5.113446 ACGAGAGGGAAGAGTATTGTCTA 57.887 43.478 0.00 0.00 0.00 2.59
2431 2639 4.883006 ACGAGAGGGAAGAGTATTGTCTAC 59.117 45.833 0.00 0.00 0.00 2.59
2432 2640 4.024725 CGAGAGGGAAGAGTATTGTCTACG 60.025 50.000 0.00 0.00 0.00 3.51
2433 2641 4.857679 AGAGGGAAGAGTATTGTCTACGT 58.142 43.478 0.00 0.00 0.00 3.57
2434 2642 5.999044 AGAGGGAAGAGTATTGTCTACGTA 58.001 41.667 0.00 0.00 0.00 3.57
2435 2643 5.821995 AGAGGGAAGAGTATTGTCTACGTAC 59.178 44.000 0.00 0.00 0.00 3.67
2436 2644 4.886489 AGGGAAGAGTATTGTCTACGTACC 59.114 45.833 0.00 0.00 0.00 3.34
2437 2645 4.037327 GGGAAGAGTATTGTCTACGTACCC 59.963 50.000 0.00 0.00 0.00 3.69
2438 2646 4.886489 GGAAGAGTATTGTCTACGTACCCT 59.114 45.833 0.00 0.00 0.00 4.34
2439 2647 5.008514 GGAAGAGTATTGTCTACGTACCCTC 59.991 48.000 0.00 0.00 0.00 4.30
2440 2648 4.125703 AGAGTATTGTCTACGTACCCTCG 58.874 47.826 0.00 0.00 0.00 4.63
2441 2649 3.873952 GAGTATTGTCTACGTACCCTCGT 59.126 47.826 0.00 0.00 45.97 4.18
2442 2650 5.023533 AGTATTGTCTACGTACCCTCGTA 57.976 43.478 0.00 0.00 43.80 3.43
2448 2656 3.233355 ACGTACCCTCGTAGAACGT 57.767 52.632 0.00 0.00 43.14 3.99
2449 2657 2.380084 ACGTACCCTCGTAGAACGTA 57.620 50.000 0.00 0.00 44.21 3.57
2450 2658 2.695359 ACGTACCCTCGTAGAACGTAA 58.305 47.619 0.00 0.00 44.21 3.18
2451 2659 2.673368 ACGTACCCTCGTAGAACGTAAG 59.327 50.000 0.00 0.00 44.21 2.34
2452 2660 2.537730 CGTACCCTCGTAGAACGTAAGC 60.538 54.545 0.00 0.00 43.14 3.09
2453 2661 0.449388 ACCCTCGTAGAACGTAAGCG 59.551 55.000 0.00 0.00 43.14 4.68
2454 2662 0.729116 CCCTCGTAGAACGTAAGCGA 59.271 55.000 0.00 0.00 43.14 4.93
2455 2663 1.131126 CCCTCGTAGAACGTAAGCGAA 59.869 52.381 0.00 0.00 43.14 4.70
2456 2664 2.414559 CCCTCGTAGAACGTAAGCGAAA 60.415 50.000 0.00 0.00 43.14 3.46
2457 2665 3.432782 CCTCGTAGAACGTAAGCGAAAT 58.567 45.455 0.00 0.00 43.14 2.17
2458 2666 3.481388 CCTCGTAGAACGTAAGCGAAATC 59.519 47.826 0.00 0.00 43.14 2.17
2459 2667 3.093574 TCGTAGAACGTAAGCGAAATCG 58.906 45.455 0.00 0.00 43.14 3.34
2460 2668 2.842485 CGTAGAACGTAAGCGAAATCGT 59.158 45.455 4.59 0.00 45.62 3.73
2461 2669 3.299020 CGTAGAACGTAAGCGAAATCGTT 59.701 43.478 4.59 8.15 46.51 3.85
2462 2670 4.201428 CGTAGAACGTAAGCGAAATCGTTT 60.201 41.667 9.73 9.73 44.47 3.60
2463 2671 4.720530 AGAACGTAAGCGAAATCGTTTT 57.279 36.364 10.07 5.33 44.47 2.43
2464 2672 5.827568 AGAACGTAAGCGAAATCGTTTTA 57.172 34.783 10.07 4.46 44.47 1.52
2465 2673 6.399204 AGAACGTAAGCGAAATCGTTTTAT 57.601 33.333 10.07 0.00 44.47 1.40
2466 2674 6.464311 AGAACGTAAGCGAAATCGTTTTATC 58.536 36.000 10.07 4.83 44.47 1.75
2467 2675 5.766702 ACGTAAGCGAAATCGTTTTATCA 57.233 34.783 10.07 0.00 42.51 2.15
2468 2676 6.155691 ACGTAAGCGAAATCGTTTTATCAA 57.844 33.333 10.07 0.00 42.51 2.57
2469 2677 6.011277 ACGTAAGCGAAATCGTTTTATCAAC 58.989 36.000 10.07 1.99 42.51 3.18
2470 2678 5.164854 CGTAAGCGAAATCGTTTTATCAACG 59.835 40.000 10.07 9.54 42.51 4.10
2471 2679 3.413558 AGCGAAATCGTTTTATCAACGC 58.586 40.909 11.72 11.72 42.80 4.84
2472 2680 2.208090 GCGAAATCGTTTTATCAACGCG 59.792 45.455 3.53 3.53 42.80 6.01
2473 2681 2.768738 CGAAATCGTTTTATCAACGCGG 59.231 45.455 12.47 0.00 42.80 6.46
2474 2682 3.722665 CGAAATCGTTTTATCAACGCGGT 60.723 43.478 12.47 0.00 42.80 5.68
2475 2683 3.817148 AATCGTTTTATCAACGCGGTT 57.183 38.095 12.47 0.00 42.80 4.44
2476 2684 2.580729 TCGTTTTATCAACGCGGTTG 57.419 45.000 12.47 12.86 43.99 3.77
2483 2691 3.898380 TCAACGCGGTTGATGTAGT 57.102 47.368 12.47 0.00 45.88 2.73
2484 2692 1.705256 TCAACGCGGTTGATGTAGTC 58.295 50.000 12.47 0.00 45.88 2.59
2485 2693 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
2486 2694 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
2487 2695 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
2488 2696 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
2489 2697 1.466192 CGCGGTTGATGTAGTCGTACA 60.466 52.381 0.00 0.00 43.43 2.90
2490 2698 1.916000 GCGGTTGATGTAGTCGTACAC 59.084 52.381 0.00 0.00 42.06 2.90
2491 2699 2.523015 CGGTTGATGTAGTCGTACACC 58.477 52.381 0.00 0.00 42.06 4.16
2492 2700 2.163010 CGGTTGATGTAGTCGTACACCT 59.837 50.000 0.00 0.00 42.06 4.00
2493 2701 3.366679 CGGTTGATGTAGTCGTACACCTT 60.367 47.826 0.00 0.00 42.06 3.50
2494 2702 4.171754 GGTTGATGTAGTCGTACACCTTC 58.828 47.826 0.00 0.00 42.06 3.46
2495 2703 4.321452 GGTTGATGTAGTCGTACACCTTCA 60.321 45.833 0.00 0.00 42.06 3.02
2496 2704 4.696899 TGATGTAGTCGTACACCTTCAG 57.303 45.455 0.00 0.00 42.06 3.02
2497 2705 3.442625 TGATGTAGTCGTACACCTTCAGG 59.557 47.826 0.00 0.00 42.06 3.86
2498 2706 3.144657 TGTAGTCGTACACCTTCAGGA 57.855 47.619 0.00 0.00 34.02 3.86
2499 2707 3.693807 TGTAGTCGTACACCTTCAGGAT 58.306 45.455 0.00 0.00 34.02 3.24
2500 2708 3.693085 TGTAGTCGTACACCTTCAGGATC 59.307 47.826 0.00 0.00 34.02 3.36
2501 2709 2.100989 AGTCGTACACCTTCAGGATCC 58.899 52.381 2.48 2.48 38.94 3.36
2502 2710 1.100510 TCGTACACCTTCAGGATCCG 58.899 55.000 5.98 1.36 38.94 4.18
2503 2711 0.102481 CGTACACCTTCAGGATCCGG 59.898 60.000 5.98 5.68 38.94 5.14
2504 2712 0.179081 GTACACCTTCAGGATCCGGC 60.179 60.000 7.07 0.00 38.94 6.13
2505 2713 1.335132 TACACCTTCAGGATCCGGCC 61.335 60.000 7.07 0.00 38.94 6.13
2506 2714 3.090532 ACCTTCAGGATCCGGCCC 61.091 66.667 7.07 0.00 38.94 5.80
2507 2715 4.241555 CCTTCAGGATCCGGCCCG 62.242 72.222 7.07 0.00 37.39 6.13
2508 2716 3.154473 CTTCAGGATCCGGCCCGA 61.154 66.667 3.71 0.00 0.00 5.14
2509 2717 2.445845 TTCAGGATCCGGCCCGAT 60.446 61.111 3.71 6.26 0.00 4.18
2510 2718 2.441822 CTTCAGGATCCGGCCCGATC 62.442 65.000 21.82 21.82 38.36 3.69
2511 2719 3.233980 CAGGATCCGGCCCGATCA 61.234 66.667 28.15 0.00 40.45 2.92
2512 2720 2.445845 AGGATCCGGCCCGATCAA 60.446 61.111 28.15 0.00 40.45 2.57
2513 2721 2.031163 GGATCCGGCCCGATCAAG 59.969 66.667 28.15 0.66 40.45 3.02
2514 2722 2.808206 GGATCCGGCCCGATCAAGT 61.808 63.158 28.15 0.43 40.45 3.16
2515 2723 1.469335 GGATCCGGCCCGATCAAGTA 61.469 60.000 28.15 0.00 40.45 2.24
2516 2724 0.319641 GATCCGGCCCGATCAAGTAC 60.320 60.000 24.11 1.56 38.83 2.73
2517 2725 1.755393 ATCCGGCCCGATCAAGTACC 61.755 60.000 3.71 0.00 0.00 3.34
2518 2726 2.279252 CGGCCCGATCAAGTACCG 60.279 66.667 0.00 0.00 0.00 4.02
2519 2727 2.777972 CGGCCCGATCAAGTACCGA 61.778 63.158 0.00 0.00 43.19 4.69
2520 2728 1.518774 GGCCCGATCAAGTACCGAA 59.481 57.895 0.00 0.00 0.00 4.30
2521 2729 0.808847 GGCCCGATCAAGTACCGAAC 60.809 60.000 0.00 0.00 0.00 3.95
2522 2730 1.143969 GCCCGATCAAGTACCGAACG 61.144 60.000 5.81 5.81 0.00 3.95
2523 2731 0.171903 CCCGATCAAGTACCGAACGT 59.828 55.000 10.35 0.00 0.00 3.99
2524 2732 1.401552 CCCGATCAAGTACCGAACGTA 59.598 52.381 10.35 0.00 0.00 3.57
2525 2733 2.444351 CCGATCAAGTACCGAACGTAC 58.556 52.381 10.35 0.00 46.69 3.67
2531 2739 3.001576 GTACCGAACGTACGACACC 57.998 57.895 24.41 6.58 38.17 4.16
2532 2740 0.517316 GTACCGAACGTACGACACCT 59.483 55.000 24.41 3.55 38.17 4.00
2533 2741 0.796312 TACCGAACGTACGACACCTC 59.204 55.000 24.41 8.85 35.09 3.85
2534 2742 1.154150 CCGAACGTACGACACCTCC 60.154 63.158 24.41 1.65 35.09 4.30
2535 2743 1.510623 CGAACGTACGACACCTCCG 60.511 63.158 24.41 9.78 35.09 4.63
2536 2744 1.799121 GAACGTACGACACCTCCGC 60.799 63.158 24.41 0.00 0.00 5.54
2537 2745 3.599792 AACGTACGACACCTCCGCG 62.600 63.158 24.41 0.00 0.00 6.46
2538 2746 4.093952 CGTACGACACCTCCGCGT 62.094 66.667 10.44 0.00 41.58 6.01
2539 2747 2.256461 GTACGACACCTCCGCGTT 59.744 61.111 4.92 0.00 39.24 4.84
2540 2748 1.799121 GTACGACACCTCCGCGTTC 60.799 63.158 4.92 0.00 39.24 3.95
2541 2749 2.260154 TACGACACCTCCGCGTTCA 61.260 57.895 4.92 0.00 39.24 3.18
2542 2750 2.191354 TACGACACCTCCGCGTTCAG 62.191 60.000 4.92 0.00 39.24 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.181967 CTTCTCGCGGTGCTTCGG 61.182 66.667 6.13 0.00 0.00 4.30
1 2 1.557443 AAACTTCTCGCGGTGCTTCG 61.557 55.000 6.13 0.00 0.00 3.79
93 94 2.031258 TCAAGCCTTCGTGTCAAACA 57.969 45.000 0.00 0.00 0.00 2.83
95 96 2.354510 CAGTTCAAGCCTTCGTGTCAAA 59.645 45.455 0.00 0.00 0.00 2.69
136 153 0.466124 GAGTGAATAGGCGGGCTCTT 59.534 55.000 7.59 4.30 0.00 2.85
138 155 0.394565 ATGAGTGAATAGGCGGGCTC 59.605 55.000 7.59 0.00 0.00 4.70
139 156 0.394565 GATGAGTGAATAGGCGGGCT 59.605 55.000 9.68 9.68 0.00 5.19
140 157 0.603975 GGATGAGTGAATAGGCGGGC 60.604 60.000 0.00 0.00 0.00 6.13
141 158 0.758734 TGGATGAGTGAATAGGCGGG 59.241 55.000 0.00 0.00 0.00 6.13
142 159 1.688735 TCTGGATGAGTGAATAGGCGG 59.311 52.381 0.00 0.00 0.00 6.13
143 160 3.388308 CTTCTGGATGAGTGAATAGGCG 58.612 50.000 0.00 0.00 0.00 5.52
193 210 2.969262 TGCATCGTGGGTCTAATGGATA 59.031 45.455 0.00 0.00 0.00 2.59
200 217 1.190643 TCATGTGCATCGTGGGTCTA 58.809 50.000 0.00 0.00 34.14 2.59
367 451 0.170339 GGTTCGGTTAATGCACTGGC 59.830 55.000 0.00 0.00 41.68 4.85
460 544 3.131396 TCCGCTGAAACTCTTCTGAAAC 58.869 45.455 0.00 0.00 33.51 2.78
625 710 2.334838 GCTACGTATTTATGCCCCTCG 58.665 52.381 0.00 0.00 0.00 4.63
685 773 5.871834 AGGAGTAGTAGATGTGCCTACTAG 58.128 45.833 10.12 0.00 46.78 2.57
686 774 5.511031 CGAGGAGTAGTAGATGTGCCTACTA 60.511 48.000 6.69 6.69 45.34 1.82
820 912 1.271652 ACGCTTCAGAGAGGAGACTGA 60.272 52.381 0.00 0.00 44.43 3.41
821 913 1.135431 CACGCTTCAGAGAGGAGACTG 60.135 57.143 0.00 0.00 44.43 3.51
823 915 0.457681 GCACGCTTCAGAGAGGAGAC 60.458 60.000 0.00 0.00 0.00 3.36
826 918 2.268802 ACGCACGCTTCAGAGAGGA 61.269 57.895 0.00 0.00 0.00 3.71
827 919 2.091112 CACGCACGCTTCAGAGAGG 61.091 63.158 0.00 0.00 0.00 3.69
893 991 1.919918 CGAGACTGAGCAAGCTAAGG 58.080 55.000 11.04 0.00 0.00 2.69
945 1043 3.449227 TAGAGCCGTGCCCGTCTG 61.449 66.667 0.00 0.00 0.00 3.51
946 1044 3.450115 GTAGAGCCGTGCCCGTCT 61.450 66.667 0.00 0.00 0.00 4.18
947 1045 4.509737 GGTAGAGCCGTGCCCGTC 62.510 72.222 0.00 0.00 0.00 4.79
949 1047 2.023414 TTATGGTAGAGCCGTGCCCG 62.023 60.000 0.00 0.00 41.21 6.13
950 1048 0.532196 GTTATGGTAGAGCCGTGCCC 60.532 60.000 0.00 0.00 41.21 5.36
951 1049 0.874607 CGTTATGGTAGAGCCGTGCC 60.875 60.000 0.00 0.00 41.21 5.01
952 1050 0.179119 ACGTTATGGTAGAGCCGTGC 60.179 55.000 0.00 0.00 41.21 5.34
953 1051 1.556564 CACGTTATGGTAGAGCCGTG 58.443 55.000 0.00 0.00 41.21 4.94
999 1098 2.509916 CCAGCAGGCCTCCTCATC 59.490 66.667 0.00 0.00 0.00 2.92
1065 1176 3.461982 GTCACGCACGAGCACGAG 61.462 66.667 11.40 3.06 42.27 4.18
1121 1232 2.325082 GCCCACGCAACGATTGACT 61.325 57.895 0.00 0.00 34.03 3.41
1122 1233 2.175811 GCCCACGCAACGATTGAC 59.824 61.111 0.00 0.00 34.03 3.18
1125 1236 2.495366 TACGAGCCCACGCAACGATT 62.495 55.000 0.00 0.00 39.27 3.34
1126 1237 2.495366 TTACGAGCCCACGCAACGAT 62.495 55.000 0.00 0.00 39.27 3.73
1131 1243 2.048597 CAGTTACGAGCCCACGCA 60.049 61.111 0.00 0.00 37.52 5.24
1138 1250 1.730593 CTACGCACGCAGTTACGAGC 61.731 60.000 0.00 0.00 41.61 5.03
1140 1252 1.154169 CCTACGCACGCAGTTACGA 60.154 57.895 0.00 0.00 41.61 3.43
1144 1256 1.080705 GAGTCCTACGCACGCAGTT 60.081 57.895 0.00 0.00 41.61 3.16
1163 1275 3.127533 GCTGCTGGTAAGTGGCCG 61.128 66.667 0.00 0.00 0.00 6.13
1164 1276 2.042831 CAGCTGCTGGTAAGTGGCC 61.043 63.158 21.71 0.00 0.00 5.36
1167 1279 1.736126 CATGTCAGCTGCTGGTAAGTG 59.264 52.381 27.79 15.81 31.51 3.16
1189 1301 2.499197 ACGTGTCAATTGCCACATGTA 58.501 42.857 18.75 0.00 40.29 2.29
1190 1302 1.317613 ACGTGTCAATTGCCACATGT 58.682 45.000 18.75 17.10 37.83 3.21
1286 1398 1.340211 CCTGTCCTCTGTAGTCGTCCT 60.340 57.143 0.00 0.00 0.00 3.85
1294 1406 1.676678 GATGCCGCCTGTCCTCTGTA 61.677 60.000 0.00 0.00 0.00 2.74
1297 1409 3.474570 GGATGCCGCCTGTCCTCT 61.475 66.667 0.00 0.00 0.00 3.69
1314 1432 0.449388 GCTTCTGCTGATTTGACGGG 59.551 55.000 0.00 0.00 36.03 5.28
1320 1438 0.393537 CCTCCCGCTTCTGCTGATTT 60.394 55.000 0.00 0.00 36.97 2.17
1321 1439 1.222936 CCTCCCGCTTCTGCTGATT 59.777 57.895 0.00 0.00 36.97 2.57
1327 1445 3.474570 CTCCCCCTCCCGCTTCTG 61.475 72.222 0.00 0.00 0.00 3.02
1348 1475 0.463295 AGCGTCATCATCCCTTGCTG 60.463 55.000 0.00 0.00 0.00 4.41
1577 1710 0.733566 TAAAAGTAGTGGCGCGACCG 60.734 55.000 19.50 0.00 43.94 4.79
1578 1711 0.997196 CTAAAAGTAGTGGCGCGACC 59.003 55.000 19.50 11.50 39.84 4.79
1579 1712 1.652619 GACTAAAAGTAGTGGCGCGAC 59.347 52.381 15.38 15.38 40.82 5.19
1580 1713 1.542915 AGACTAAAAGTAGTGGCGCGA 59.457 47.619 12.10 0.00 40.82 5.87
1581 1714 1.992170 AGACTAAAAGTAGTGGCGCG 58.008 50.000 0.00 0.00 40.82 6.86
1582 1715 4.744136 AAAAGACTAAAAGTAGTGGCGC 57.256 40.909 0.00 0.00 40.82 6.53
1594 1727 6.928520 AGCTAGCTAAACGGTAAAAGACTAA 58.071 36.000 17.69 0.00 0.00 2.24
1595 1728 6.521151 AGCTAGCTAAACGGTAAAAGACTA 57.479 37.500 17.69 0.00 0.00 2.59
1596 1729 5.402997 AGCTAGCTAAACGGTAAAAGACT 57.597 39.130 17.69 0.00 0.00 3.24
1597 1730 6.073385 ACAAAGCTAGCTAAACGGTAAAAGAC 60.073 38.462 19.70 0.00 0.00 3.01
1598 1731 5.993441 ACAAAGCTAGCTAAACGGTAAAAGA 59.007 36.000 19.70 0.00 0.00 2.52
1599 1732 6.073440 TCACAAAGCTAGCTAAACGGTAAAAG 60.073 38.462 19.70 1.12 0.00 2.27
1600 1733 5.759273 TCACAAAGCTAGCTAAACGGTAAAA 59.241 36.000 19.70 0.00 0.00 1.52
1601 1734 5.299148 TCACAAAGCTAGCTAAACGGTAAA 58.701 37.500 19.70 1.79 0.00 2.01
1618 1751 5.486526 ACCAAACAAGAGCAAAATCACAAA 58.513 33.333 0.00 0.00 0.00 2.83
1642 1775 2.108514 CCACAAGCATCACGCCGAT 61.109 57.895 0.00 0.00 44.04 4.18
1644 1777 2.040213 GATCCACAAGCATCACGCCG 62.040 60.000 0.00 0.00 44.04 6.46
1713 1849 7.860872 CGGCACATTAACTTTTACTCTCTTTTT 59.139 33.333 0.00 0.00 0.00 1.94
1714 1850 7.360361 CGGCACATTAACTTTTACTCTCTTTT 58.640 34.615 0.00 0.00 0.00 2.27
1715 1851 6.567891 GCGGCACATTAACTTTTACTCTCTTT 60.568 38.462 0.00 0.00 0.00 2.52
1716 1852 5.106673 GCGGCACATTAACTTTTACTCTCTT 60.107 40.000 0.00 0.00 0.00 2.85
1717 1853 4.392138 GCGGCACATTAACTTTTACTCTCT 59.608 41.667 0.00 0.00 0.00 3.10
1718 1854 4.648970 GCGGCACATTAACTTTTACTCTC 58.351 43.478 0.00 0.00 0.00 3.20
1719 1855 3.124636 CGCGGCACATTAACTTTTACTCT 59.875 43.478 0.00 0.00 0.00 3.24
1720 1856 3.413558 CGCGGCACATTAACTTTTACTC 58.586 45.455 0.00 0.00 0.00 2.59
1721 1857 2.160813 CCGCGGCACATTAACTTTTACT 59.839 45.455 14.67 0.00 0.00 2.24
1722 1858 2.511879 CCGCGGCACATTAACTTTTAC 58.488 47.619 14.67 0.00 0.00 2.01
1723 1859 1.469308 CCCGCGGCACATTAACTTTTA 59.531 47.619 22.85 0.00 0.00 1.52
1724 1860 0.242555 CCCGCGGCACATTAACTTTT 59.757 50.000 22.85 0.00 0.00 2.27
1725 1861 1.591504 CCCCGCGGCACATTAACTTT 61.592 55.000 22.85 0.00 0.00 2.66
1726 1862 2.043980 CCCCGCGGCACATTAACTT 61.044 57.895 22.85 0.00 0.00 2.66
1727 1863 2.437716 CCCCGCGGCACATTAACT 60.438 61.111 22.85 0.00 0.00 2.24
1728 1864 3.514362 CCCCCGCGGCACATTAAC 61.514 66.667 22.85 0.00 0.00 2.01
1729 1865 3.690685 CTCCCCCGCGGCACATTAA 62.691 63.158 22.85 0.00 0.00 1.40
1730 1866 4.169696 CTCCCCCGCGGCACATTA 62.170 66.667 22.85 0.00 0.00 1.90
1737 1873 2.435693 AATCTCTTCTCCCCCGCGG 61.436 63.158 21.04 21.04 0.00 6.46
1738 1874 1.227380 CAATCTCTTCTCCCCCGCG 60.227 63.158 0.00 0.00 0.00 6.46
1739 1875 1.147153 CCAATCTCTTCTCCCCCGC 59.853 63.158 0.00 0.00 0.00 6.13
1740 1876 0.179000 CACCAATCTCTTCTCCCCCG 59.821 60.000 0.00 0.00 0.00 5.73
1741 1877 1.065126 CACACCAATCTCTTCTCCCCC 60.065 57.143 0.00 0.00 0.00 5.40
1742 1878 1.630878 ACACACCAATCTCTTCTCCCC 59.369 52.381 0.00 0.00 0.00 4.81
1743 1879 2.675317 CGACACACCAATCTCTTCTCCC 60.675 54.545 0.00 0.00 0.00 4.30
1744 1880 2.611518 CGACACACCAATCTCTTCTCC 58.388 52.381 0.00 0.00 0.00 3.71
1745 1881 1.996191 GCGACACACCAATCTCTTCTC 59.004 52.381 0.00 0.00 0.00 2.87
1746 1882 1.670087 CGCGACACACCAATCTCTTCT 60.670 52.381 0.00 0.00 0.00 2.85
1747 1883 0.716108 CGCGACACACCAATCTCTTC 59.284 55.000 0.00 0.00 0.00 2.87
1748 1884 0.670546 CCGCGACACACCAATCTCTT 60.671 55.000 8.23 0.00 0.00 2.85
1749 1885 1.079819 CCGCGACACACCAATCTCT 60.080 57.895 8.23 0.00 0.00 3.10
1750 1886 2.740714 GCCGCGACACACCAATCTC 61.741 63.158 8.23 0.00 0.00 2.75
1751 1887 2.742372 GCCGCGACACACCAATCT 60.742 61.111 8.23 0.00 0.00 2.40
1752 1888 3.047280 TGCCGCGACACACCAATC 61.047 61.111 8.23 0.00 0.00 2.67
1753 1889 3.353836 GTGCCGCGACACACCAAT 61.354 61.111 21.10 0.00 40.40 3.16
1757 1893 4.961511 TCAGGTGCCGCGACACAC 62.962 66.667 26.63 20.56 42.55 3.82
1758 1894 4.228567 TTCAGGTGCCGCGACACA 62.229 61.111 26.63 10.08 42.55 3.72
1759 1895 3.414700 CTTCAGGTGCCGCGACAC 61.415 66.667 17.87 17.87 39.94 3.67
1760 1896 4.680237 CCTTCAGGTGCCGCGACA 62.680 66.667 8.23 0.00 0.00 4.35
1761 1897 4.373116 TCCTTCAGGTGCCGCGAC 62.373 66.667 8.23 0.00 36.34 5.19
1762 1898 4.069232 CTCCTTCAGGTGCCGCGA 62.069 66.667 8.23 0.00 36.34 5.87
1809 1945 1.742750 GCTTATCGGGGAAGAAACGCT 60.743 52.381 0.00 0.00 0.00 5.07
1924 2126 2.336809 CCGGCGCCACTAGATCTC 59.663 66.667 28.98 0.00 0.00 2.75
2074 2276 4.648626 ACTGCACCACGCCATGCT 62.649 61.111 6.88 0.00 42.55 3.79
2111 2313 3.518998 CCACGAGATCGCCGAGGT 61.519 66.667 15.55 0.00 44.43 3.85
2113 2315 0.736325 AAAACCACGAGATCGCCGAG 60.736 55.000 15.55 8.75 44.43 4.63
2144 2346 3.426829 CGTCATCGTCTCTGATGTGAACT 60.427 47.826 3.90 0.00 44.82 3.01
2150 2358 1.064654 TGCTCGTCATCGTCTCTGATG 59.935 52.381 0.00 0.00 45.70 3.07
2170 2378 0.891373 CGCCGAGATGGATCCTACAT 59.109 55.000 14.23 0.00 42.00 2.29
2173 2381 2.276116 GCCGCCGAGATGGATCCTA 61.276 63.158 14.23 0.00 42.00 2.94
2174 2382 3.620785 GCCGCCGAGATGGATCCT 61.621 66.667 14.23 0.00 42.00 3.24
2269 2477 1.476007 GCCATCGTAGGAGCCCTGAT 61.476 60.000 4.16 0.00 34.61 2.90
2270 2478 2.134287 GCCATCGTAGGAGCCCTGA 61.134 63.158 4.16 0.00 34.61 3.86
2284 2492 3.367743 CCGCAACAGCAGTGCCAT 61.368 61.111 12.58 0.00 0.00 4.40
2319 2527 1.323412 GAAGCTCCAGATCTAGCCGA 58.677 55.000 12.89 0.00 39.64 5.54
2333 2541 1.534729 GTTCCCCAACATTCGAAGCT 58.465 50.000 3.35 0.00 32.14 3.74
2338 2546 1.730064 CACTACGTTCCCCAACATTCG 59.270 52.381 0.00 0.00 32.14 3.34
2342 2550 3.181453 TGAAATCACTACGTTCCCCAACA 60.181 43.478 0.00 0.00 32.14 3.33
2343 2551 3.404899 TGAAATCACTACGTTCCCCAAC 58.595 45.455 0.00 0.00 0.00 3.77
2344 2552 3.773418 TGAAATCACTACGTTCCCCAA 57.227 42.857 0.00 0.00 0.00 4.12
2345 2553 3.773418 TTGAAATCACTACGTTCCCCA 57.227 42.857 0.00 0.00 0.00 4.96
2346 2554 5.441709 TTTTTGAAATCACTACGTTCCCC 57.558 39.130 0.00 0.00 0.00 4.81
2366 2574 2.325509 GCGTGTGCGTAGGAATTTTT 57.674 45.000 0.00 0.00 40.81 1.94
2378 2586 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
2379 2587 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
2380 2588 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
2381 2589 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
2382 2590 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
2383 2591 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
2384 2592 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
2385 2593 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
2386 2594 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
2387 2595 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
2388 2596 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
2389 2597 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
2390 2598 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
2391 2599 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
2392 2600 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
2393 2601 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
2394 2602 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
2395 2603 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
2396 2604 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
2397 2605 1.069204 TCCCTCTCGTTGCTATGCATC 59.931 52.381 0.19 0.00 38.76 3.91
2398 2606 1.123077 TCCCTCTCGTTGCTATGCAT 58.877 50.000 3.79 3.79 38.76 3.96
2399 2607 0.901827 TTCCCTCTCGTTGCTATGCA 59.098 50.000 0.00 0.00 36.47 3.96
2400 2608 1.137086 TCTTCCCTCTCGTTGCTATGC 59.863 52.381 0.00 0.00 0.00 3.14
2401 2609 2.428890 ACTCTTCCCTCTCGTTGCTATG 59.571 50.000 0.00 0.00 0.00 2.23
2402 2610 2.741145 ACTCTTCCCTCTCGTTGCTAT 58.259 47.619 0.00 0.00 0.00 2.97
2403 2611 2.217510 ACTCTTCCCTCTCGTTGCTA 57.782 50.000 0.00 0.00 0.00 3.49
2404 2612 2.217510 TACTCTTCCCTCTCGTTGCT 57.782 50.000 0.00 0.00 0.00 3.91
2405 2613 3.190874 CAATACTCTTCCCTCTCGTTGC 58.809 50.000 0.00 0.00 0.00 4.17
2406 2614 4.158764 AGACAATACTCTTCCCTCTCGTTG 59.841 45.833 0.00 0.00 0.00 4.10
2407 2615 4.345854 AGACAATACTCTTCCCTCTCGTT 58.654 43.478 0.00 0.00 0.00 3.85
2408 2616 3.970842 AGACAATACTCTTCCCTCTCGT 58.029 45.455 0.00 0.00 0.00 4.18
2409 2617 4.024725 CGTAGACAATACTCTTCCCTCTCG 60.025 50.000 0.00 0.00 0.00 4.04
2410 2618 4.883006 ACGTAGACAATACTCTTCCCTCTC 59.117 45.833 0.00 0.00 0.00 3.20
2411 2619 4.857679 ACGTAGACAATACTCTTCCCTCT 58.142 43.478 0.00 0.00 0.00 3.69
2412 2620 5.008514 GGTACGTAGACAATACTCTTCCCTC 59.991 48.000 0.00 0.00 0.00 4.30
2413 2621 4.886489 GGTACGTAGACAATACTCTTCCCT 59.114 45.833 0.00 0.00 0.00 4.20
2414 2622 4.037327 GGGTACGTAGACAATACTCTTCCC 59.963 50.000 0.00 0.00 0.00 3.97
2415 2623 4.886489 AGGGTACGTAGACAATACTCTTCC 59.114 45.833 0.00 0.00 0.00 3.46
2416 2624 5.277250 CGAGGGTACGTAGACAATACTCTTC 60.277 48.000 0.00 0.00 29.56 2.87
2417 2625 4.574013 CGAGGGTACGTAGACAATACTCTT 59.426 45.833 0.00 0.00 29.56 2.85
2418 2626 4.125703 CGAGGGTACGTAGACAATACTCT 58.874 47.826 0.00 0.00 32.17 3.24
2419 2627 3.873952 ACGAGGGTACGTAGACAATACTC 59.126 47.826 0.00 0.00 44.72 2.59
2420 2628 3.878778 ACGAGGGTACGTAGACAATACT 58.121 45.455 0.00 0.00 44.72 2.12
2429 2637 2.380084 ACGTTCTACGAGGGTACGTA 57.620 50.000 6.19 0.00 46.05 3.57
2430 2638 2.380084 TACGTTCTACGAGGGTACGT 57.620 50.000 6.19 0.00 46.05 3.57
2431 2639 2.537730 GCTTACGTTCTACGAGGGTACG 60.538 54.545 6.19 0.00 46.05 3.67
2432 2640 2.537730 CGCTTACGTTCTACGAGGGTAC 60.538 54.545 6.19 0.00 46.05 3.34
2433 2641 1.665679 CGCTTACGTTCTACGAGGGTA 59.334 52.381 6.19 0.00 46.05 3.69
2434 2642 0.449388 CGCTTACGTTCTACGAGGGT 59.551 55.000 6.19 0.00 46.05 4.34
2435 2643 0.729116 TCGCTTACGTTCTACGAGGG 59.271 55.000 6.19 2.89 46.05 4.30
2436 2644 2.532531 TTCGCTTACGTTCTACGAGG 57.467 50.000 6.19 0.00 46.05 4.63
2437 2645 3.175324 CGATTTCGCTTACGTTCTACGAG 59.825 47.826 6.19 0.00 46.05 4.18
2438 2646 3.093574 CGATTTCGCTTACGTTCTACGA 58.906 45.455 6.19 0.00 46.05 3.43
2439 2647 2.842485 ACGATTTCGCTTACGTTCTACG 59.158 45.455 0.00 0.00 45.20 3.51
2440 2648 4.812862 AACGATTTCGCTTACGTTCTAC 57.187 40.909 0.00 0.00 43.66 2.59
2441 2649 5.827568 AAAACGATTTCGCTTACGTTCTA 57.172 34.783 0.00 0.00 45.71 2.10
2442 2650 4.720530 AAAACGATTTCGCTTACGTTCT 57.279 36.364 0.00 0.00 45.71 3.01
2443 2651 6.235642 TGATAAAACGATTTCGCTTACGTTC 58.764 36.000 0.00 0.00 45.71 3.95
2445 2653 5.766702 TGATAAAACGATTTCGCTTACGT 57.233 34.783 0.00 0.00 44.43 3.57
2446 2654 5.164854 CGTTGATAAAACGATTTCGCTTACG 59.835 40.000 4.69 0.00 45.64 3.18
2447 2655 5.054125 GCGTTGATAAAACGATTTCGCTTAC 60.054 40.000 14.24 0.00 45.64 2.34
2448 2656 5.016985 GCGTTGATAAAACGATTTCGCTTA 58.983 37.500 14.24 0.00 45.64 3.09
2449 2657 3.844099 GCGTTGATAAAACGATTTCGCTT 59.156 39.130 14.24 0.00 45.64 4.68
2450 2658 3.413558 GCGTTGATAAAACGATTTCGCT 58.586 40.909 14.24 0.00 45.64 4.93
2451 2659 2.208090 CGCGTTGATAAAACGATTTCGC 59.792 45.455 14.24 9.96 45.64 4.70
2452 2660 2.768738 CCGCGTTGATAAAACGATTTCG 59.231 45.455 14.24 7.83 45.64 3.46
2453 2661 3.739494 ACCGCGTTGATAAAACGATTTC 58.261 40.909 14.24 0.00 45.64 2.17
2454 2662 3.817148 ACCGCGTTGATAAAACGATTT 57.183 38.095 14.24 0.00 45.64 2.17
2455 2663 3.186817 TCAACCGCGTTGATAAAACGATT 59.813 39.130 16.54 2.81 45.88 3.34
2456 2664 2.737783 TCAACCGCGTTGATAAAACGAT 59.262 40.909 16.54 0.00 45.88 3.73
2457 2665 2.133553 TCAACCGCGTTGATAAAACGA 58.866 42.857 16.54 0.00 45.88 3.85
2458 2666 2.580729 TCAACCGCGTTGATAAAACG 57.419 45.000 16.54 6.27 45.88 3.60
2466 2674 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
2467 2675 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
2468 2676 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
2469 2677 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
2470 2678 1.916000 GTGTACGACTACATCAACCGC 59.084 52.381 0.00 0.00 35.28 5.68
2471 2679 2.163010 AGGTGTACGACTACATCAACCG 59.837 50.000 0.00 0.00 36.55 4.44
2472 2680 3.863142 AGGTGTACGACTACATCAACC 57.137 47.619 0.00 0.00 36.55 3.77
2473 2681 4.801891 TGAAGGTGTACGACTACATCAAC 58.198 43.478 0.00 0.00 36.55 3.18
2474 2682 4.082408 CCTGAAGGTGTACGACTACATCAA 60.082 45.833 0.00 0.00 36.55 2.57
2475 2683 3.442625 CCTGAAGGTGTACGACTACATCA 59.557 47.826 0.00 0.00 36.55 3.07
2476 2684 3.693085 TCCTGAAGGTGTACGACTACATC 59.307 47.826 0.00 0.00 35.28 3.06
2477 2685 3.693807 TCCTGAAGGTGTACGACTACAT 58.306 45.455 0.00 0.00 35.28 2.29
2478 2686 3.144657 TCCTGAAGGTGTACGACTACA 57.855 47.619 0.00 0.00 36.34 2.74
2479 2687 3.066481 GGATCCTGAAGGTGTACGACTAC 59.934 52.174 3.84 0.00 36.34 2.73
2480 2688 3.285484 GGATCCTGAAGGTGTACGACTA 58.715 50.000 3.84 0.00 36.34 2.59
2481 2689 2.100989 GGATCCTGAAGGTGTACGACT 58.899 52.381 3.84 0.00 36.34 4.18
2482 2690 1.202268 CGGATCCTGAAGGTGTACGAC 60.202 57.143 10.75 0.00 32.68 4.34
2483 2691 1.100510 CGGATCCTGAAGGTGTACGA 58.899 55.000 10.75 0.00 32.68 3.43
2484 2692 0.102481 CCGGATCCTGAAGGTGTACG 59.898 60.000 10.75 0.00 36.34 3.67
2485 2693 0.179081 GCCGGATCCTGAAGGTGTAC 60.179 60.000 5.05 0.00 36.34 2.90
2486 2694 1.335132 GGCCGGATCCTGAAGGTGTA 61.335 60.000 5.05 0.00 36.34 2.90
2487 2695 2.670148 GGCCGGATCCTGAAGGTGT 61.670 63.158 5.05 0.00 36.34 4.16
2488 2696 2.190578 GGCCGGATCCTGAAGGTG 59.809 66.667 5.05 0.00 36.34 4.00
2489 2697 3.090532 GGGCCGGATCCTGAAGGT 61.091 66.667 5.05 0.00 36.34 3.50
2490 2698 4.241555 CGGGCCGGATCCTGAAGG 62.242 72.222 20.56 4.49 34.34 3.46
2491 2699 2.441822 GATCGGGCCGGATCCTGAAG 62.442 65.000 32.82 0.00 44.13 3.02
2492 2700 2.445845 ATCGGGCCGGATCCTGAA 60.446 61.111 27.98 3.68 44.13 3.02
2493 2701 2.917751 GATCGGGCCGGATCCTGA 60.918 66.667 32.82 9.23 44.96 3.86
2494 2702 2.721971 CTTGATCGGGCCGGATCCTG 62.722 65.000 36.73 28.05 41.71 3.86
2495 2703 2.445845 TTGATCGGGCCGGATCCT 60.446 61.111 36.73 16.22 41.71 3.24
2496 2704 1.469335 TACTTGATCGGGCCGGATCC 61.469 60.000 36.73 24.51 41.71 3.36
2497 2705 0.319641 GTACTTGATCGGGCCGGATC 60.320 60.000 34.88 34.88 42.52 3.36
2498 2706 1.746517 GTACTTGATCGGGCCGGAT 59.253 57.895 27.98 24.61 0.00 4.18
2499 2707 2.428925 GGTACTTGATCGGGCCGGA 61.429 63.158 27.98 16.21 0.00 5.14
2500 2708 2.108362 GGTACTTGATCGGGCCGG 59.892 66.667 27.98 12.18 0.00 6.13
2501 2709 2.279252 CGGTACTTGATCGGGCCG 60.279 66.667 22.51 22.51 0.00 6.13
2502 2710 0.808847 GTTCGGTACTTGATCGGGCC 60.809 60.000 0.00 0.00 30.29 5.80
2503 2711 1.143969 CGTTCGGTACTTGATCGGGC 61.144 60.000 9.70 0.00 30.29 6.13
2504 2712 0.171903 ACGTTCGGTACTTGATCGGG 59.828 55.000 17.26 0.00 33.92 5.14
2505 2713 2.444351 GTACGTTCGGTACTTGATCGG 58.556 52.381 17.26 0.00 46.50 4.18
2513 2721 0.517316 AGGTGTCGTACGTTCGGTAC 59.483 55.000 16.05 12.81 46.54 3.34
2514 2722 0.796312 GAGGTGTCGTACGTTCGGTA 59.204 55.000 16.05 1.40 0.00 4.02
2515 2723 1.576421 GAGGTGTCGTACGTTCGGT 59.424 57.895 16.05 0.00 0.00 4.69
2516 2724 1.154150 GGAGGTGTCGTACGTTCGG 60.154 63.158 16.05 0.00 0.00 4.30
2517 2725 1.510623 CGGAGGTGTCGTACGTTCG 60.511 63.158 16.05 8.41 39.50 3.95
2518 2726 1.799121 GCGGAGGTGTCGTACGTTC 60.799 63.158 16.05 10.37 0.00 3.95
2519 2727 2.256461 GCGGAGGTGTCGTACGTT 59.744 61.111 16.05 0.00 0.00 3.99
2520 2728 4.093952 CGCGGAGGTGTCGTACGT 62.094 66.667 16.05 0.00 0.00 3.57
2521 2729 3.599792 AACGCGGAGGTGTCGTACG 62.600 63.158 12.47 9.53 35.39 3.67
2522 2730 1.799121 GAACGCGGAGGTGTCGTAC 60.799 63.158 12.47 0.00 35.39 3.67
2523 2731 2.191354 CTGAACGCGGAGGTGTCGTA 62.191 60.000 12.47 0.00 35.39 3.43
2524 2732 3.553437 CTGAACGCGGAGGTGTCGT 62.553 63.158 12.47 0.00 35.39 4.34
2525 2733 2.805353 CTGAACGCGGAGGTGTCG 60.805 66.667 12.47 0.00 35.39 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.