Multiple sequence alignment - TraesCS2A01G342500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G342500 chr2A 100.000 3401 0 0 1 3401 579582207 579585607 0.000000e+00 6281.0
1 TraesCS2A01G342500 chr2D 92.356 2080 106 25 384 2423 412253855 412255921 0.000000e+00 2911.0
2 TraesCS2A01G342500 chr2D 92.506 894 62 4 2509 3399 10151598 10150707 0.000000e+00 1275.0
3 TraesCS2A01G342500 chr2B 91.898 2123 105 32 433 2507 485752014 485749911 0.000000e+00 2905.0
4 TraesCS2A01G342500 chr7A 94.413 895 42 3 2508 3399 444791320 444790431 0.000000e+00 1369.0
5 TraesCS2A01G342500 chr1D 90.858 897 75 7 2507 3399 35635806 35636699 0.000000e+00 1195.0
6 TraesCS2A01G342500 chr1D 84.746 59 7 2 19 75 10388366 10388308 1.320000e-04 58.4
7 TraesCS2A01G342500 chr6D 88.667 900 92 10 2507 3399 97347101 97346205 0.000000e+00 1088.0
8 TraesCS2A01G342500 chr6D 80.141 851 129 30 1166 1996 431470622 431469792 1.750000e-167 599.0
9 TraesCS2A01G342500 chr5D 88.066 905 95 11 2505 3399 524927392 524928293 0.000000e+00 1061.0
10 TraesCS2A01G342500 chr6A 87.704 919 80 17 2508 3398 5007137 5006224 0.000000e+00 1040.0
11 TraesCS2A01G342500 chr7D 87.500 904 98 11 2505 3399 92108762 92109659 0.000000e+00 1029.0
12 TraesCS2A01G342500 chr4B 89.693 815 72 12 2591 3399 498909694 498908886 0.000000e+00 1029.0
13 TraesCS2A01G342500 chr4B 90.863 197 14 4 197 393 206242715 206242907 9.360000e-66 261.0
14 TraesCS2A01G342500 chrUn 90.237 717 62 8 2507 3218 405833845 405833132 0.000000e+00 929.0
15 TraesCS2A01G342500 chrUn 79.265 844 141 28 1170 1996 74559359 74558533 2.960000e-155 558.0
16 TraesCS2A01G342500 chr3B 80.524 878 153 17 1134 2002 666791782 666790914 0.000000e+00 658.0
17 TraesCS2A01G342500 chr3B 93.522 247 15 1 3153 3399 162861431 162861186 1.930000e-97 366.0
18 TraesCS2A01G342500 chr3D 80.671 864 145 21 1134 1986 505066304 505065452 0.000000e+00 651.0
19 TraesCS2A01G342500 chr3D 94.915 177 9 0 211 387 50883048 50882872 9.290000e-71 278.0
20 TraesCS2A01G342500 chr3A 80.162 862 153 16 1134 1986 643210706 643209854 2.230000e-176 628.0
21 TraesCS2A01G342500 chr3A 94.565 184 10 0 208 391 57718537 57718720 5.550000e-73 285.0
22 TraesCS2A01G342500 chr6B 79.953 843 130 28 1170 1994 651423126 651423947 4.890000e-163 584.0
23 TraesCS2A01G342500 chr4A 96.045 177 7 0 209 385 133842168 133841992 4.290000e-74 289.0
24 TraesCS2A01G342500 chr4A 88.462 78 7 2 1 77 636665392 636665468 3.610000e-15 93.5
25 TraesCS2A01G342500 chr5A 96.532 173 6 0 211 383 604908091 604907919 1.540000e-73 287.0
26 TraesCS2A01G342500 chr5A 95.376 173 8 0 211 383 604942133 604941961 3.340000e-70 276.0
27 TraesCS2A01G342500 chr7B 94.413 179 9 1 211 388 662001627 662001449 1.200000e-69 274.0
28 TraesCS2A01G342500 chr5B 93.443 183 10 2 211 393 84580266 84580446 1.560000e-68 270.0
29 TraesCS2A01G342500 chr1B 93.443 183 10 2 211 393 174407321 174407501 1.560000e-68 270.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G342500 chr2A 579582207 579585607 3400 False 6281 6281 100.000 1 3401 1 chr2A.!!$F1 3400
1 TraesCS2A01G342500 chr2D 412253855 412255921 2066 False 2911 2911 92.356 384 2423 1 chr2D.!!$F1 2039
2 TraesCS2A01G342500 chr2D 10150707 10151598 891 True 1275 1275 92.506 2509 3399 1 chr2D.!!$R1 890
3 TraesCS2A01G342500 chr2B 485749911 485752014 2103 True 2905 2905 91.898 433 2507 1 chr2B.!!$R1 2074
4 TraesCS2A01G342500 chr7A 444790431 444791320 889 True 1369 1369 94.413 2508 3399 1 chr7A.!!$R1 891
5 TraesCS2A01G342500 chr1D 35635806 35636699 893 False 1195 1195 90.858 2507 3399 1 chr1D.!!$F1 892
6 TraesCS2A01G342500 chr6D 97346205 97347101 896 True 1088 1088 88.667 2507 3399 1 chr6D.!!$R1 892
7 TraesCS2A01G342500 chr6D 431469792 431470622 830 True 599 599 80.141 1166 1996 1 chr6D.!!$R2 830
8 TraesCS2A01G342500 chr5D 524927392 524928293 901 False 1061 1061 88.066 2505 3399 1 chr5D.!!$F1 894
9 TraesCS2A01G342500 chr6A 5006224 5007137 913 True 1040 1040 87.704 2508 3398 1 chr6A.!!$R1 890
10 TraesCS2A01G342500 chr7D 92108762 92109659 897 False 1029 1029 87.500 2505 3399 1 chr7D.!!$F1 894
11 TraesCS2A01G342500 chr4B 498908886 498909694 808 True 1029 1029 89.693 2591 3399 1 chr4B.!!$R1 808
12 TraesCS2A01G342500 chrUn 405833132 405833845 713 True 929 929 90.237 2507 3218 1 chrUn.!!$R2 711
13 TraesCS2A01G342500 chrUn 74558533 74559359 826 True 558 558 79.265 1170 1996 1 chrUn.!!$R1 826
14 TraesCS2A01G342500 chr3B 666790914 666791782 868 True 658 658 80.524 1134 2002 1 chr3B.!!$R2 868
15 TraesCS2A01G342500 chr3D 505065452 505066304 852 True 651 651 80.671 1134 1986 1 chr3D.!!$R2 852
16 TraesCS2A01G342500 chr3A 643209854 643210706 852 True 628 628 80.162 1134 1986 1 chr3A.!!$R1 852
17 TraesCS2A01G342500 chr6B 651423126 651423947 821 False 584 584 79.953 1170 1994 1 chr6B.!!$F1 824

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 298 0.106769 ACAACCCATGTCAGCACACA 60.107 50.0 0.00 0.0 37.96 3.72 F
303 304 0.179207 CATGTCAGCACACACGCATC 60.179 55.0 0.00 0.0 34.48 3.91 F
304 305 0.321034 ATGTCAGCACACACGCATCT 60.321 50.0 0.00 0.0 34.48 2.90 F
632 633 0.528466 TGCGCTCCGAGATCAATCAC 60.528 55.0 9.73 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 2343 1.227674 GGTATTGCTCTGCTCCCCG 60.228 63.158 0.00 0.00 0.00 5.73 R
2340 2445 1.807165 CGGGCAGTCACTCATGTCG 60.807 63.158 0.00 0.00 0.00 4.35 R
2370 2475 2.971598 CGAACTCCCCCAGTGCCAT 61.972 63.158 0.00 0.00 34.56 4.40 R
2528 2633 0.969894 GATCATACCAGTAGGCGCCT 59.030 55.000 34.85 34.85 39.06 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.814899 TTTTGAATCTGTTTGCTATTTTCTGAA 57.185 25.926 0.00 0.00 0.00 3.02
27 28 9.985730 TTTGAATCTGTTTGCTATTTTCTGAAT 57.014 25.926 0.00 0.00 0.00 2.57
28 29 9.985730 TTGAATCTGTTTGCTATTTTCTGAATT 57.014 25.926 0.00 0.00 0.00 2.17
29 30 9.985730 TGAATCTGTTTGCTATTTTCTGAATTT 57.014 25.926 0.00 0.00 0.00 1.82
33 34 9.897744 TCTGTTTGCTATTTTCTGAATTTACTG 57.102 29.630 0.00 0.00 0.00 2.74
34 35 9.683069 CTGTTTGCTATTTTCTGAATTTACTGT 57.317 29.630 0.00 0.00 0.00 3.55
38 39 9.677567 TTGCTATTTTCTGAATTTACTGTTCAC 57.322 29.630 0.00 0.00 32.55 3.18
39 40 8.296713 TGCTATTTTCTGAATTTACTGTTCACC 58.703 33.333 0.00 0.00 32.55 4.02
40 41 7.481798 GCTATTTTCTGAATTTACTGTTCACCG 59.518 37.037 0.00 0.00 32.55 4.94
41 42 5.682943 TTTCTGAATTTACTGTTCACCGG 57.317 39.130 0.00 0.00 32.55 5.28
42 43 4.610605 TCTGAATTTACTGTTCACCGGA 57.389 40.909 9.46 0.00 32.55 5.14
43 44 4.963373 TCTGAATTTACTGTTCACCGGAA 58.037 39.130 9.46 0.00 32.55 4.30
44 45 4.994852 TCTGAATTTACTGTTCACCGGAAG 59.005 41.667 9.46 0.00 32.62 3.46
45 46 3.500680 TGAATTTACTGTTCACCGGAAGC 59.499 43.478 9.46 0.00 32.62 3.86
46 47 2.623878 TTTACTGTTCACCGGAAGCA 57.376 45.000 9.46 2.88 32.62 3.91
47 48 2.163818 TTACTGTTCACCGGAAGCAG 57.836 50.000 9.46 15.74 37.76 4.24
48 49 1.334160 TACTGTTCACCGGAAGCAGA 58.666 50.000 24.04 10.81 36.51 4.26
49 50 0.687354 ACTGTTCACCGGAAGCAGAT 59.313 50.000 24.04 11.21 36.51 2.90
50 51 1.081892 CTGTTCACCGGAAGCAGATG 58.918 55.000 9.46 0.00 35.76 2.90
51 52 0.684535 TGTTCACCGGAAGCAGATGA 59.315 50.000 9.46 0.00 32.62 2.92
52 53 1.338105 TGTTCACCGGAAGCAGATGAG 60.338 52.381 9.46 0.00 32.62 2.90
53 54 0.391661 TTCACCGGAAGCAGATGAGC 60.392 55.000 9.46 0.00 0.00 4.26
54 55 1.817099 CACCGGAAGCAGATGAGCC 60.817 63.158 9.46 0.00 34.23 4.70
55 56 1.992277 ACCGGAAGCAGATGAGCCT 60.992 57.895 9.46 0.00 34.23 4.58
56 57 1.523258 CCGGAAGCAGATGAGCCTG 60.523 63.158 0.00 0.00 37.23 4.85
57 58 1.523258 CGGAAGCAGATGAGCCTGG 60.523 63.158 0.00 0.00 34.82 4.45
58 59 1.153005 GGAAGCAGATGAGCCTGGG 60.153 63.158 0.00 0.00 34.82 4.45
59 60 1.823041 GAAGCAGATGAGCCTGGGC 60.823 63.158 3.00 3.00 42.33 5.36
60 61 2.547640 GAAGCAGATGAGCCTGGGCA 62.548 60.000 14.39 0.00 44.88 5.36
61 62 2.827642 GCAGATGAGCCTGGGCAC 60.828 66.667 14.39 8.23 44.88 5.01
76 77 2.792749 GGGCACCGTTTTGAATTATCG 58.207 47.619 0.00 0.00 40.86 2.92
77 78 2.162809 GGGCACCGTTTTGAATTATCGT 59.837 45.455 0.00 0.00 40.86 3.73
78 79 3.374678 GGGCACCGTTTTGAATTATCGTA 59.625 43.478 0.00 0.00 40.86 3.43
79 80 4.142643 GGGCACCGTTTTGAATTATCGTAA 60.143 41.667 0.00 0.00 40.86 3.18
80 81 5.449451 GGGCACCGTTTTGAATTATCGTAAT 60.449 40.000 0.00 0.00 40.86 1.89
81 82 6.031471 GGCACCGTTTTGAATTATCGTAATT 58.969 36.000 3.62 3.62 0.00 1.40
82 83 6.528774 GGCACCGTTTTGAATTATCGTAATTT 59.471 34.615 5.03 0.00 0.00 1.82
83 84 7.697291 GGCACCGTTTTGAATTATCGTAATTTA 59.303 33.333 5.03 0.06 0.00 1.40
84 85 9.228636 GCACCGTTTTGAATTATCGTAATTTAT 57.771 29.630 5.03 0.00 0.00 1.40
98 99 7.781548 TCGTAATTTATTTACCTTCTGAGCC 57.218 36.000 0.00 0.00 37.49 4.70
99 100 7.332557 TCGTAATTTATTTACCTTCTGAGCCA 58.667 34.615 0.00 0.00 37.49 4.75
100 101 7.825270 TCGTAATTTATTTACCTTCTGAGCCAA 59.175 33.333 0.00 0.00 37.49 4.52
101 102 8.621286 CGTAATTTATTTACCTTCTGAGCCAAT 58.379 33.333 0.00 0.00 37.49 3.16
104 105 9.875691 AATTTATTTACCTTCTGAGCCAATTTC 57.124 29.630 0.00 0.00 0.00 2.17
105 106 8.415950 TTTATTTACCTTCTGAGCCAATTTCA 57.584 30.769 0.00 0.00 0.00 2.69
106 107 8.593945 TTATTTACCTTCTGAGCCAATTTCAT 57.406 30.769 0.00 0.00 0.00 2.57
107 108 6.916360 TTTACCTTCTGAGCCAATTTCATT 57.084 33.333 0.00 0.00 0.00 2.57
108 109 6.916360 TTACCTTCTGAGCCAATTTCATTT 57.084 33.333 0.00 0.00 0.00 2.32
109 110 5.813513 ACCTTCTGAGCCAATTTCATTTT 57.186 34.783 0.00 0.00 0.00 1.82
110 111 6.916360 ACCTTCTGAGCCAATTTCATTTTA 57.084 33.333 0.00 0.00 0.00 1.52
111 112 7.301868 ACCTTCTGAGCCAATTTCATTTTAA 57.698 32.000 0.00 0.00 0.00 1.52
112 113 7.910584 ACCTTCTGAGCCAATTTCATTTTAAT 58.089 30.769 0.00 0.00 0.00 1.40
113 114 8.377799 ACCTTCTGAGCCAATTTCATTTTAATT 58.622 29.630 0.00 0.00 0.00 1.40
114 115 9.223099 CCTTCTGAGCCAATTTCATTTTAATTT 57.777 29.630 0.00 0.00 0.00 1.82
136 137 9.784531 AATTTACTTCTCAAACTTCTCATCAGA 57.215 29.630 0.00 0.00 0.00 3.27
137 138 9.784531 ATTTACTTCTCAAACTTCTCATCAGAA 57.215 29.630 0.00 0.00 37.11 3.02
138 139 9.784531 TTTACTTCTCAAACTTCTCATCAGAAT 57.215 29.630 0.00 0.00 38.02 2.40
141 142 9.956640 ACTTCTCAAACTTCTCATCAGAATATT 57.043 29.630 0.00 0.00 38.02 1.28
180 181 9.730420 AATTTACAGAATTGCATTAATACGGAC 57.270 29.630 0.00 0.00 0.00 4.79
181 182 7.851387 TTACAGAATTGCATTAATACGGACA 57.149 32.000 0.00 0.00 0.00 4.02
182 183 6.363577 ACAGAATTGCATTAATACGGACAG 57.636 37.500 0.00 0.00 0.00 3.51
183 184 5.296780 ACAGAATTGCATTAATACGGACAGG 59.703 40.000 0.00 0.00 0.00 4.00
184 185 5.296780 CAGAATTGCATTAATACGGACAGGT 59.703 40.000 0.00 0.00 0.00 4.00
185 186 6.481976 CAGAATTGCATTAATACGGACAGGTA 59.518 38.462 0.00 0.00 0.00 3.08
186 187 7.011950 CAGAATTGCATTAATACGGACAGGTAA 59.988 37.037 0.00 0.00 0.00 2.85
187 188 7.554835 AGAATTGCATTAATACGGACAGGTAAA 59.445 33.333 0.00 0.00 0.00 2.01
188 189 7.817418 ATTGCATTAATACGGACAGGTAAAT 57.183 32.000 0.00 0.00 0.00 1.40
189 190 6.854496 TGCATTAATACGGACAGGTAAATC 57.146 37.500 0.00 0.00 0.00 2.17
190 191 6.350103 TGCATTAATACGGACAGGTAAATCA 58.650 36.000 0.00 0.00 0.00 2.57
191 192 6.259167 TGCATTAATACGGACAGGTAAATCAC 59.741 38.462 0.00 0.00 0.00 3.06
192 193 6.259167 GCATTAATACGGACAGGTAAATCACA 59.741 38.462 0.00 0.00 0.00 3.58
193 194 7.201661 GCATTAATACGGACAGGTAAATCACAA 60.202 37.037 0.00 0.00 0.00 3.33
194 195 7.837202 TTAATACGGACAGGTAAATCACAAG 57.163 36.000 0.00 0.00 0.00 3.16
195 196 3.053831 ACGGACAGGTAAATCACAAGG 57.946 47.619 0.00 0.00 0.00 3.61
196 197 2.370849 ACGGACAGGTAAATCACAAGGT 59.629 45.455 0.00 0.00 0.00 3.50
197 198 2.742053 CGGACAGGTAAATCACAAGGTG 59.258 50.000 0.00 0.00 34.45 4.00
198 199 3.556213 CGGACAGGTAAATCACAAGGTGA 60.556 47.826 1.05 1.05 46.90 4.02
212 213 6.356556 TCACAAGGTGATATACTTGAATGGG 58.643 40.000 16.67 5.50 45.22 4.00
213 214 6.157820 TCACAAGGTGATATACTTGAATGGGA 59.842 38.462 16.67 7.01 45.22 4.37
214 215 6.828273 CACAAGGTGATATACTTGAATGGGAA 59.172 38.462 16.67 0.00 45.22 3.97
215 216 7.503566 CACAAGGTGATATACTTGAATGGGAAT 59.496 37.037 16.67 0.00 45.22 3.01
216 217 8.723365 ACAAGGTGATATACTTGAATGGGAATA 58.277 33.333 16.67 0.00 45.22 1.75
217 218 9.003658 CAAGGTGATATACTTGAATGGGAATAC 57.996 37.037 8.00 0.00 45.22 1.89
218 219 7.690256 AGGTGATATACTTGAATGGGAATACC 58.310 38.462 0.00 0.00 40.81 2.73
219 220 7.517604 AGGTGATATACTTGAATGGGAATACCT 59.482 37.037 0.00 0.00 41.11 3.08
220 221 8.822805 GGTGATATACTTGAATGGGAATACCTA 58.177 37.037 0.00 0.00 41.11 3.08
221 222 9.877178 GTGATATACTTGAATGGGAATACCTAG 57.123 37.037 0.00 0.00 41.11 3.02
222 223 9.837681 TGATATACTTGAATGGGAATACCTAGA 57.162 33.333 0.00 0.00 41.11 2.43
225 226 6.893020 ACTTGAATGGGAATACCTAGAACT 57.107 37.500 0.00 0.00 41.11 3.01
226 227 6.890293 ACTTGAATGGGAATACCTAGAACTC 58.110 40.000 0.00 0.00 41.11 3.01
227 228 6.443849 ACTTGAATGGGAATACCTAGAACTCA 59.556 38.462 0.00 0.00 41.11 3.41
228 229 7.127955 ACTTGAATGGGAATACCTAGAACTCAT 59.872 37.037 0.00 0.00 41.11 2.90
229 230 7.067496 TGAATGGGAATACCTAGAACTCATC 57.933 40.000 0.00 0.00 41.11 2.92
230 231 6.846505 TGAATGGGAATACCTAGAACTCATCT 59.153 38.462 0.00 0.00 41.11 2.90
231 232 8.010697 TGAATGGGAATACCTAGAACTCATCTA 58.989 37.037 0.00 0.00 41.11 1.98
232 233 8.798975 AATGGGAATACCTAGAACTCATCTAA 57.201 34.615 0.00 0.00 40.12 2.10
233 234 8.798975 ATGGGAATACCTAGAACTCATCTAAA 57.201 34.615 0.00 0.00 40.12 1.85
234 235 8.798975 TGGGAATACCTAGAACTCATCTAAAT 57.201 34.615 0.00 0.00 40.12 1.40
235 236 8.651389 TGGGAATACCTAGAACTCATCTAAATG 58.349 37.037 0.00 0.00 40.12 2.32
236 237 8.871125 GGGAATACCTAGAACTCATCTAAATGA 58.129 37.037 0.00 0.00 40.12 2.57
262 263 9.347240 AGATATAATTTGGTCTCATTCACTTGG 57.653 33.333 0.00 0.00 0.00 3.61
263 264 9.342308 GATATAATTTGGTCTCATTCACTTGGA 57.658 33.333 0.00 0.00 0.00 3.53
264 265 9.699410 ATATAATTTGGTCTCATTCACTTGGAA 57.301 29.630 0.00 0.00 40.46 3.53
265 266 6.729690 AATTTGGTCTCATTCACTTGGAAA 57.270 33.333 0.00 0.00 39.39 3.13
266 267 6.923199 ATTTGGTCTCATTCACTTGGAAAT 57.077 33.333 0.00 0.00 39.39 2.17
267 268 5.964958 TTGGTCTCATTCACTTGGAAATC 57.035 39.130 0.00 0.00 39.39 2.17
268 269 4.984295 TGGTCTCATTCACTTGGAAATCA 58.016 39.130 0.00 0.00 39.39 2.57
269 270 5.384336 TGGTCTCATTCACTTGGAAATCAA 58.616 37.500 0.00 0.00 39.39 2.57
270 271 5.832595 TGGTCTCATTCACTTGGAAATCAAA 59.167 36.000 0.00 0.00 39.39 2.69
271 272 6.323482 TGGTCTCATTCACTTGGAAATCAAAA 59.677 34.615 0.00 0.00 39.39 2.44
272 273 7.147759 TGGTCTCATTCACTTGGAAATCAAAAA 60.148 33.333 0.00 0.00 39.39 1.94
273 274 7.169813 GGTCTCATTCACTTGGAAATCAAAAAC 59.830 37.037 0.00 0.00 39.39 2.43
274 275 7.706179 GTCTCATTCACTTGGAAATCAAAAACA 59.294 33.333 0.00 0.00 39.39 2.83
275 276 8.256605 TCTCATTCACTTGGAAATCAAAAACAA 58.743 29.630 0.00 0.00 39.39 2.83
276 277 8.783833 TCATTCACTTGGAAATCAAAAACAAA 57.216 26.923 0.00 0.00 39.39 2.83
277 278 9.224267 TCATTCACTTGGAAATCAAAAACAAAA 57.776 25.926 0.00 0.00 39.39 2.44
278 279 9.837525 CATTCACTTGGAAATCAAAAACAAAAA 57.162 25.926 0.00 0.00 39.39 1.94
279 280 9.838975 ATTCACTTGGAAATCAAAAACAAAAAC 57.161 25.926 0.00 0.00 39.39 2.43
280 281 8.383318 TCACTTGGAAATCAAAAACAAAAACA 57.617 26.923 0.00 0.00 34.56 2.83
281 282 8.840321 TCACTTGGAAATCAAAAACAAAAACAA 58.160 25.926 0.00 0.00 34.56 2.83
282 283 8.900762 CACTTGGAAATCAAAAACAAAAACAAC 58.099 29.630 0.00 0.00 34.56 3.32
283 284 8.079203 ACTTGGAAATCAAAAACAAAAACAACC 58.921 29.630 0.00 0.00 34.56 3.77
284 285 6.914259 TGGAAATCAAAAACAAAAACAACCC 58.086 32.000 0.00 0.00 0.00 4.11
285 286 6.490040 TGGAAATCAAAAACAAAAACAACCCA 59.510 30.769 0.00 0.00 0.00 4.51
286 287 7.177392 TGGAAATCAAAAACAAAAACAACCCAT 59.823 29.630 0.00 0.00 0.00 4.00
287 288 7.487509 GGAAATCAAAAACAAAAACAACCCATG 59.512 33.333 0.00 0.00 0.00 3.66
288 289 7.459795 AATCAAAAACAAAAACAACCCATGT 57.540 28.000 0.00 0.00 46.82 3.21
289 290 6.487689 TCAAAAACAAAAACAACCCATGTC 57.512 33.333 0.00 0.00 42.99 3.06
290 291 5.997746 TCAAAAACAAAAACAACCCATGTCA 59.002 32.000 0.00 0.00 42.99 3.58
291 292 6.148480 TCAAAAACAAAAACAACCCATGTCAG 59.852 34.615 0.00 0.00 42.99 3.51
292 293 3.177997 ACAAAAACAACCCATGTCAGC 57.822 42.857 0.00 0.00 42.99 4.26
293 294 2.499289 ACAAAAACAACCCATGTCAGCA 59.501 40.909 0.00 0.00 42.99 4.41
294 295 2.865551 CAAAAACAACCCATGTCAGCAC 59.134 45.455 0.00 0.00 42.99 4.40
295 296 1.774110 AAACAACCCATGTCAGCACA 58.226 45.000 0.00 0.00 42.99 4.57
296 297 1.032014 AACAACCCATGTCAGCACAC 58.968 50.000 0.00 0.00 42.99 3.82
297 298 0.106769 ACAACCCATGTCAGCACACA 60.107 50.000 0.00 0.00 37.96 3.72
298 299 0.311790 CAACCCATGTCAGCACACAC 59.688 55.000 0.00 0.00 34.48 3.82
299 300 1.165907 AACCCATGTCAGCACACACG 61.166 55.000 0.00 0.00 34.48 4.49
300 301 2.557805 CCATGTCAGCACACACGC 59.442 61.111 0.00 0.00 34.48 5.34
301 302 2.253051 CCATGTCAGCACACACGCA 61.253 57.895 0.00 0.00 34.48 5.24
302 303 1.579964 CCATGTCAGCACACACGCAT 61.580 55.000 0.00 0.00 34.48 4.73
303 304 0.179207 CATGTCAGCACACACGCATC 60.179 55.000 0.00 0.00 34.48 3.91
304 305 0.321034 ATGTCAGCACACACGCATCT 60.321 50.000 0.00 0.00 34.48 2.90
305 306 0.532640 TGTCAGCACACACGCATCTT 60.533 50.000 0.00 0.00 0.00 2.40
306 307 1.270041 TGTCAGCACACACGCATCTTA 60.270 47.619 0.00 0.00 0.00 2.10
307 308 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
308 309 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
309 310 3.616821 GTCAGCACACACGCATCTTATAA 59.383 43.478 0.00 0.00 0.00 0.98
310 311 3.616821 TCAGCACACACGCATCTTATAAC 59.383 43.478 0.00 0.00 0.00 1.89
311 312 3.370672 CAGCACACACGCATCTTATAACA 59.629 43.478 0.00 0.00 0.00 2.41
312 313 4.034394 CAGCACACACGCATCTTATAACAT 59.966 41.667 0.00 0.00 0.00 2.71
313 314 4.271049 AGCACACACGCATCTTATAACATC 59.729 41.667 0.00 0.00 0.00 3.06
314 315 4.033932 GCACACACGCATCTTATAACATCA 59.966 41.667 0.00 0.00 0.00 3.07
315 316 5.492854 CACACACGCATCTTATAACATCAC 58.507 41.667 0.00 0.00 0.00 3.06
316 317 5.063312 CACACACGCATCTTATAACATCACA 59.937 40.000 0.00 0.00 0.00 3.58
317 318 5.817296 ACACACGCATCTTATAACATCACAT 59.183 36.000 0.00 0.00 0.00 3.21
318 319 6.018751 ACACACGCATCTTATAACATCACATC 60.019 38.462 0.00 0.00 0.00 3.06
319 320 5.466728 ACACGCATCTTATAACATCACATCC 59.533 40.000 0.00 0.00 0.00 3.51
320 321 5.466393 CACGCATCTTATAACATCACATCCA 59.534 40.000 0.00 0.00 0.00 3.41
321 322 6.018016 CACGCATCTTATAACATCACATCCAA 60.018 38.462 0.00 0.00 0.00 3.53
322 323 6.712095 ACGCATCTTATAACATCACATCCAAT 59.288 34.615 0.00 0.00 0.00 3.16
323 324 7.019418 CGCATCTTATAACATCACATCCAATG 58.981 38.462 0.00 0.00 0.00 2.82
324 325 7.095102 CGCATCTTATAACATCACATCCAATGA 60.095 37.037 0.00 0.00 0.00 2.57
325 326 8.019669 GCATCTTATAACATCACATCCAATGAC 58.980 37.037 0.00 0.00 0.00 3.06
326 327 9.281371 CATCTTATAACATCACATCCAATGACT 57.719 33.333 0.00 0.00 0.00 3.41
334 335 8.455903 ACATCACATCCAATGACTATAAAAGG 57.544 34.615 0.00 0.00 0.00 3.11
335 336 8.055181 ACATCACATCCAATGACTATAAAAGGT 58.945 33.333 0.00 0.00 0.00 3.50
336 337 7.864108 TCACATCCAATGACTATAAAAGGTG 57.136 36.000 0.00 0.00 0.00 4.00
337 338 7.629157 TCACATCCAATGACTATAAAAGGTGA 58.371 34.615 0.00 0.00 0.00 4.02
338 339 8.106462 TCACATCCAATGACTATAAAAGGTGAA 58.894 33.333 0.00 0.00 0.00 3.18
339 340 8.906867 CACATCCAATGACTATAAAAGGTGAAT 58.093 33.333 0.00 0.00 0.00 2.57
340 341 8.906867 ACATCCAATGACTATAAAAGGTGAATG 58.093 33.333 0.00 0.00 0.00 2.67
341 342 9.123902 CATCCAATGACTATAAAAGGTGAATGA 57.876 33.333 0.00 0.00 0.00 2.57
342 343 8.737168 TCCAATGACTATAAAAGGTGAATGAG 57.263 34.615 0.00 0.00 0.00 2.90
343 344 8.548025 TCCAATGACTATAAAAGGTGAATGAGA 58.452 33.333 0.00 0.00 0.00 3.27
344 345 8.616076 CCAATGACTATAAAAGGTGAATGAGAC 58.384 37.037 0.00 0.00 0.00 3.36
345 346 8.616076 CAATGACTATAAAAGGTGAATGAGACC 58.384 37.037 0.00 0.00 0.00 3.85
346 347 7.252612 TGACTATAAAAGGTGAATGAGACCA 57.747 36.000 0.00 0.00 35.76 4.02
347 348 7.685481 TGACTATAAAAGGTGAATGAGACCAA 58.315 34.615 0.00 0.00 35.76 3.67
348 349 8.160765 TGACTATAAAAGGTGAATGAGACCAAA 58.839 33.333 0.00 0.00 35.76 3.28
349 350 9.178758 GACTATAAAAGGTGAATGAGACCAAAT 57.821 33.333 0.00 0.00 35.76 2.32
350 351 9.533831 ACTATAAAAGGTGAATGAGACCAAATT 57.466 29.630 0.00 0.00 35.76 1.82
356 357 9.927081 AAAGGTGAATGAGACCAAATTATATCT 57.073 29.630 0.00 0.00 35.76 1.98
357 358 9.566432 AAGGTGAATGAGACCAAATTATATCTC 57.434 33.333 0.00 6.03 38.46 2.75
378 379 5.682234 TCATCTAGATGAGTTCTGGCAAA 57.318 39.130 27.93 4.94 42.42 3.68
379 380 6.053632 TCATCTAGATGAGTTCTGGCAAAA 57.946 37.500 27.93 4.75 42.42 2.44
380 381 5.877012 TCATCTAGATGAGTTCTGGCAAAAC 59.123 40.000 27.93 0.00 42.42 2.43
381 382 5.489792 TCTAGATGAGTTCTGGCAAAACT 57.510 39.130 5.78 5.78 39.61 2.66
382 383 5.240891 TCTAGATGAGTTCTGGCAAAACTG 58.759 41.667 11.61 0.00 37.10 3.16
393 394 7.448469 AGTTCTGGCAAAACTGTACTTGAATAT 59.552 33.333 5.20 0.00 35.68 1.28
412 413 7.977904 TGAATATTTATATCCAGCTGCAATCG 58.022 34.615 8.66 0.00 0.00 3.34
583 584 9.621629 ATTCAATGGTACCGACTATATGAAAAA 57.378 29.630 7.57 0.00 32.70 1.94
632 633 0.528466 TGCGCTCCGAGATCAATCAC 60.528 55.000 9.73 0.00 0.00 3.06
643 644 1.747355 GATCAATCACCACAGGGCTTG 59.253 52.381 0.00 0.00 37.90 4.01
696 698 2.560105 GCTGGGATATTTGGCTCATTCC 59.440 50.000 0.00 0.00 0.00 3.01
725 727 2.372264 ACTTTCTAGTGCATGCATGGG 58.628 47.619 25.64 15.97 31.99 4.00
727 729 3.054434 ACTTTCTAGTGCATGCATGGGTA 60.054 43.478 25.64 12.08 31.99 3.69
733 764 2.026641 GTGCATGCATGGGTAGTGAAT 58.973 47.619 25.64 0.00 0.00 2.57
765 796 4.424626 TGACGTACATGCATCTTCTTCTC 58.575 43.478 0.00 0.00 0.00 2.87
794 835 0.929615 ATGTTTTGCTGCGTGTTTGC 59.070 45.000 0.00 0.00 0.00 3.68
832 875 0.662374 ACAACTTACGCCGTGAGTCG 60.662 55.000 15.30 6.86 31.20 4.18
884 927 1.299165 CCGAGCCCGTCAAGATACG 60.299 63.158 0.00 0.00 42.49 3.06
950 993 5.753721 AGCCTTCTTCTACATTCTTCTGT 57.246 39.130 0.00 0.00 0.00 3.41
954 997 6.634805 CCTTCTTCTACATTCTTCTGTAGCA 58.365 40.000 6.41 0.00 45.38 3.49
1004 1057 1.220749 GCAGCTACGTTCCCATGGA 59.779 57.895 15.22 0.00 0.00 3.41
1042 1095 1.524621 CCTATTCCTGGCCTGCACG 60.525 63.158 3.32 0.00 0.00 5.34
1075 1128 0.617413 AGTCATGGACAGAGGCAAGG 59.383 55.000 0.00 0.00 34.60 3.61
1101 1154 4.678743 GACCCTGCCAACCCCCAC 62.679 72.222 0.00 0.00 0.00 4.61
1235 1288 0.809241 CTCATGAAGCTCGAGGGCAC 60.809 60.000 15.58 0.00 34.17 5.01
1557 1653 2.519541 CTCGAGAGCCCGGGATCA 60.520 66.667 38.46 18.99 32.23 2.92
1614 1710 2.284921 CTGGGGTCCCTGCTCTCA 60.285 66.667 8.15 0.00 36.94 3.27
1794 1890 1.561643 AGAAGGCGTGGAAGATCTCA 58.438 50.000 0.00 0.00 0.00 3.27
1830 1926 3.996124 AAGCACCTGAGCTCGCGT 61.996 61.111 9.64 4.33 45.89 6.01
2006 2111 4.717629 CGACGACAAGGAGCCGCA 62.718 66.667 0.00 0.00 0.00 5.69
2021 2126 3.423154 GCAGGAAGCGGAACACGG 61.423 66.667 0.00 0.00 44.51 4.94
2078 2183 1.112113 GAGAGTGCGGGAGGTAATGA 58.888 55.000 0.00 0.00 0.00 2.57
2088 2193 1.549170 GGAGGTAATGACGACAGTGGT 59.451 52.381 0.00 0.00 0.00 4.16
2340 2445 2.740714 GAGCGTTGCCGATGTGGTC 61.741 63.158 0.00 0.00 41.21 4.02
2354 2459 1.000274 TGTGGTCGACATGAGTGACTG 60.000 52.381 18.91 0.00 33.21 3.51
2409 2514 6.008696 TCGGATTTGGATTAGTGGGTTAAT 57.991 37.500 0.00 0.00 0.00 1.40
2419 2524 9.491406 TGGATTAGTGGGTTAATAGTTACTGTA 57.509 33.333 0.00 0.00 0.00 2.74
2498 2603 5.699097 TTTCTGTTAACTATTTGCGCCTT 57.301 34.783 4.18 0.00 0.00 4.35
2519 2624 3.536956 TTTGATTAGGACGTGGCTAGG 57.463 47.619 0.00 0.00 0.00 3.02
2584 2689 8.103305 ACCATATATAGAAAATGCAATCGGTCT 58.897 33.333 0.00 0.00 0.00 3.85
2638 2770 2.711009 TGGTTCTTTGTCACCATCTCCT 59.289 45.455 0.00 0.00 38.20 3.69
2659 2792 4.141801 CCTCCCACGTGATCCTGTTAAATA 60.142 45.833 19.30 0.00 0.00 1.40
2683 2816 2.161808 CCTAGATCTTGTCGTCACGTGT 59.838 50.000 16.51 0.00 0.00 4.49
2749 2883 2.163818 AGCGTCGAAATTCAGTTCCA 57.836 45.000 0.00 0.00 0.00 3.53
2791 2928 5.526115 TCACGACGAGTTCTTCAAAACTAT 58.474 37.500 0.00 0.00 39.55 2.12
3074 3222 4.720046 TGTTTGATGGTTAGTTGCCTACA 58.280 39.130 0.00 0.00 0.00 2.74
3085 3233 4.685169 AGTTGCCTACAATTGATGTTCG 57.315 40.909 13.59 0.00 43.63 3.95
3302 3450 6.097915 TCCTACCATAACTAGCAATAGCAC 57.902 41.667 0.00 0.00 45.49 4.40
3309 3457 7.040062 ACCATAACTAGCAATAGCACACAAAAA 60.040 33.333 0.00 0.00 45.49 1.94
3317 3466 5.734498 GCAATAGCACACAAAAAGAGTATCG 59.266 40.000 0.00 0.00 40.06 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.985730 AATTCAGAAAATAGCAAACAGATTCAA 57.014 25.926 0.00 0.00 0.00 2.69
7 8 9.897744 CAGTAAATTCAGAAAATAGCAAACAGA 57.102 29.630 0.00 0.00 0.00 3.41
12 13 9.677567 GTGAACAGTAAATTCAGAAAATAGCAA 57.322 29.630 0.00 0.00 36.76 3.91
13 14 8.296713 GGTGAACAGTAAATTCAGAAAATAGCA 58.703 33.333 0.00 0.00 36.76 3.49
14 15 7.481798 CGGTGAACAGTAAATTCAGAAAATAGC 59.518 37.037 0.00 0.00 36.76 2.97
15 16 7.962918 CCGGTGAACAGTAAATTCAGAAAATAG 59.037 37.037 0.00 0.00 36.76 1.73
16 17 7.662258 TCCGGTGAACAGTAAATTCAGAAAATA 59.338 33.333 0.00 0.00 36.76 1.40
17 18 6.488683 TCCGGTGAACAGTAAATTCAGAAAAT 59.511 34.615 0.00 0.00 36.76 1.82
18 19 5.823570 TCCGGTGAACAGTAAATTCAGAAAA 59.176 36.000 0.00 0.00 36.76 2.29
19 20 5.369833 TCCGGTGAACAGTAAATTCAGAAA 58.630 37.500 0.00 0.00 36.76 2.52
20 21 4.963373 TCCGGTGAACAGTAAATTCAGAA 58.037 39.130 0.00 0.00 36.76 3.02
21 22 4.610605 TCCGGTGAACAGTAAATTCAGA 57.389 40.909 0.00 0.00 36.76 3.27
22 23 4.378459 GCTTCCGGTGAACAGTAAATTCAG 60.378 45.833 0.00 0.00 36.76 3.02
23 24 3.500680 GCTTCCGGTGAACAGTAAATTCA 59.499 43.478 0.00 0.00 33.68 2.57
24 25 3.500680 TGCTTCCGGTGAACAGTAAATTC 59.499 43.478 0.00 0.00 0.00 2.17
25 26 3.482436 TGCTTCCGGTGAACAGTAAATT 58.518 40.909 0.00 0.00 0.00 1.82
26 27 3.074412 CTGCTTCCGGTGAACAGTAAAT 58.926 45.455 0.00 0.00 31.06 1.40
27 28 2.103432 TCTGCTTCCGGTGAACAGTAAA 59.897 45.455 0.00 0.00 34.27 2.01
28 29 1.689813 TCTGCTTCCGGTGAACAGTAA 59.310 47.619 0.00 0.00 34.27 2.24
29 30 1.334160 TCTGCTTCCGGTGAACAGTA 58.666 50.000 0.00 0.00 34.27 2.74
30 31 0.687354 ATCTGCTTCCGGTGAACAGT 59.313 50.000 0.00 0.00 34.27 3.55
31 32 1.081892 CATCTGCTTCCGGTGAACAG 58.918 55.000 0.00 5.77 34.08 3.16
32 33 0.684535 TCATCTGCTTCCGGTGAACA 59.315 50.000 0.00 0.00 0.00 3.18
33 34 1.363744 CTCATCTGCTTCCGGTGAAC 58.636 55.000 0.00 0.00 0.00 3.18
34 35 0.391661 GCTCATCTGCTTCCGGTGAA 60.392 55.000 0.00 0.00 0.00 3.18
35 36 1.219124 GCTCATCTGCTTCCGGTGA 59.781 57.895 0.00 0.00 0.00 4.02
36 37 1.817099 GGCTCATCTGCTTCCGGTG 60.817 63.158 0.00 0.00 0.00 4.94
37 38 1.992277 AGGCTCATCTGCTTCCGGT 60.992 57.895 0.00 0.00 0.00 5.28
38 39 1.523258 CAGGCTCATCTGCTTCCGG 60.523 63.158 0.00 0.00 0.00 5.14
39 40 1.523258 CCAGGCTCATCTGCTTCCG 60.523 63.158 0.00 0.00 33.64 4.30
40 41 1.153005 CCCAGGCTCATCTGCTTCC 60.153 63.158 0.00 0.00 33.64 3.46
41 42 1.823041 GCCCAGGCTCATCTGCTTC 60.823 63.158 0.08 0.00 38.26 3.86
42 43 2.274760 GCCCAGGCTCATCTGCTT 59.725 61.111 0.08 0.00 38.26 3.91
43 44 3.013327 TGCCCAGGCTCATCTGCT 61.013 61.111 10.58 0.00 42.51 4.24
44 45 2.827642 GTGCCCAGGCTCATCTGC 60.828 66.667 10.58 0.00 42.51 4.26
45 46 2.124403 GGTGCCCAGGCTCATCTG 60.124 66.667 10.58 0.00 42.51 2.90
46 47 3.790437 CGGTGCCCAGGCTCATCT 61.790 66.667 10.58 0.00 42.51 2.90
47 48 3.628646 AACGGTGCCCAGGCTCATC 62.629 63.158 10.58 0.00 42.51 2.92
48 49 2.713531 AAAACGGTGCCCAGGCTCAT 62.714 55.000 10.58 0.00 42.51 2.90
49 50 3.429372 AAAACGGTGCCCAGGCTCA 62.429 57.895 10.58 0.00 42.51 4.26
50 51 2.597510 AAAACGGTGCCCAGGCTC 60.598 61.111 10.58 6.18 42.51 4.70
51 52 2.912025 CAAAACGGTGCCCAGGCT 60.912 61.111 10.58 0.00 42.51 4.58
52 53 1.815817 ATTCAAAACGGTGCCCAGGC 61.816 55.000 0.38 0.38 42.35 4.85
53 54 0.678950 AATTCAAAACGGTGCCCAGG 59.321 50.000 0.00 0.00 0.00 4.45
54 55 3.730662 CGATAATTCAAAACGGTGCCCAG 60.731 47.826 0.00 0.00 0.00 4.45
55 56 2.162608 CGATAATTCAAAACGGTGCCCA 59.837 45.455 0.00 0.00 0.00 5.36
56 57 2.162809 ACGATAATTCAAAACGGTGCCC 59.837 45.455 0.00 0.00 0.00 5.36
57 58 3.481112 ACGATAATTCAAAACGGTGCC 57.519 42.857 0.00 0.00 0.00 5.01
58 59 7.500807 AAATTACGATAATTCAAAACGGTGC 57.499 32.000 0.00 0.00 0.00 5.01
72 73 9.485206 GGCTCAGAAGGTAAATAAATTACGATA 57.515 33.333 0.00 0.00 44.06 2.92
73 74 7.990886 TGGCTCAGAAGGTAAATAAATTACGAT 59.009 33.333 0.00 0.00 44.06 3.73
74 75 7.332557 TGGCTCAGAAGGTAAATAAATTACGA 58.667 34.615 0.00 0.00 44.06 3.43
75 76 7.548196 TGGCTCAGAAGGTAAATAAATTACG 57.452 36.000 0.00 0.00 44.06 3.18
78 79 9.875691 GAAATTGGCTCAGAAGGTAAATAAATT 57.124 29.630 0.00 0.00 0.00 1.82
79 80 9.034800 TGAAATTGGCTCAGAAGGTAAATAAAT 57.965 29.630 0.00 0.00 0.00 1.40
80 81 8.415950 TGAAATTGGCTCAGAAGGTAAATAAA 57.584 30.769 0.00 0.00 0.00 1.40
81 82 8.593945 ATGAAATTGGCTCAGAAGGTAAATAA 57.406 30.769 0.00 0.00 0.00 1.40
82 83 8.593945 AATGAAATTGGCTCAGAAGGTAAATA 57.406 30.769 0.00 0.00 33.44 1.40
83 84 7.486407 AATGAAATTGGCTCAGAAGGTAAAT 57.514 32.000 0.00 0.00 33.44 1.40
84 85 6.916360 AATGAAATTGGCTCAGAAGGTAAA 57.084 33.333 0.00 0.00 33.44 2.01
85 86 6.916360 AAATGAAATTGGCTCAGAAGGTAA 57.084 33.333 0.00 0.00 36.10 2.85
86 87 6.916360 AAAATGAAATTGGCTCAGAAGGTA 57.084 33.333 0.00 0.00 36.10 3.08
87 88 5.813513 AAAATGAAATTGGCTCAGAAGGT 57.186 34.783 0.00 0.00 36.10 3.50
88 89 8.782339 AATTAAAATGAAATTGGCTCAGAAGG 57.218 30.769 0.00 0.00 36.10 3.46
110 111 9.784531 TCTGATGAGAAGTTTGAGAAGTAAATT 57.215 29.630 0.00 0.00 0.00 1.82
111 112 9.784531 TTCTGATGAGAAGTTTGAGAAGTAAAT 57.215 29.630 0.00 0.00 32.98 1.40
112 113 9.784531 ATTCTGATGAGAAGTTTGAGAAGTAAA 57.215 29.630 0.11 0.00 41.62 2.01
115 116 9.956640 AATATTCTGATGAGAAGTTTGAGAAGT 57.043 29.630 0.11 0.00 41.62 3.01
154 155 9.730420 GTCCGTATTAATGCAATTCTGTAAATT 57.270 29.630 4.37 0.00 37.87 1.82
155 156 8.898761 TGTCCGTATTAATGCAATTCTGTAAAT 58.101 29.630 4.37 0.00 37.87 1.40
156 157 8.270080 TGTCCGTATTAATGCAATTCTGTAAA 57.730 30.769 4.37 0.00 37.87 2.01
157 158 7.011950 CCTGTCCGTATTAATGCAATTCTGTAA 59.988 37.037 4.37 0.00 37.87 2.41
158 159 6.481976 CCTGTCCGTATTAATGCAATTCTGTA 59.518 38.462 4.37 0.00 37.87 2.74
159 160 5.296780 CCTGTCCGTATTAATGCAATTCTGT 59.703 40.000 4.37 0.00 37.87 3.41
160 161 5.296780 ACCTGTCCGTATTAATGCAATTCTG 59.703 40.000 4.37 0.00 37.87 3.02
161 162 5.437060 ACCTGTCCGTATTAATGCAATTCT 58.563 37.500 4.37 0.00 37.87 2.40
162 163 5.751243 ACCTGTCCGTATTAATGCAATTC 57.249 39.130 4.37 0.00 37.87 2.17
163 164 7.633193 TTTACCTGTCCGTATTAATGCAATT 57.367 32.000 4.37 0.00 41.28 2.32
164 165 7.500892 TGATTTACCTGTCCGTATTAATGCAAT 59.499 33.333 4.37 0.00 0.00 3.56
165 166 6.824196 TGATTTACCTGTCCGTATTAATGCAA 59.176 34.615 4.37 0.00 0.00 4.08
166 167 6.259167 GTGATTTACCTGTCCGTATTAATGCA 59.741 38.462 4.37 0.00 0.00 3.96
167 168 6.259167 TGTGATTTACCTGTCCGTATTAATGC 59.741 38.462 0.00 0.00 0.00 3.56
168 169 7.780008 TGTGATTTACCTGTCCGTATTAATG 57.220 36.000 0.00 0.00 0.00 1.90
169 170 7.497909 CCTTGTGATTTACCTGTCCGTATTAAT 59.502 37.037 0.00 0.00 0.00 1.40
170 171 6.819649 CCTTGTGATTTACCTGTCCGTATTAA 59.180 38.462 0.00 0.00 0.00 1.40
171 172 6.070653 ACCTTGTGATTTACCTGTCCGTATTA 60.071 38.462 0.00 0.00 0.00 0.98
172 173 5.183228 CCTTGTGATTTACCTGTCCGTATT 58.817 41.667 0.00 0.00 0.00 1.89
173 174 4.224370 ACCTTGTGATTTACCTGTCCGTAT 59.776 41.667 0.00 0.00 0.00 3.06
174 175 3.579586 ACCTTGTGATTTACCTGTCCGTA 59.420 43.478 0.00 0.00 0.00 4.02
175 176 2.370849 ACCTTGTGATTTACCTGTCCGT 59.629 45.455 0.00 0.00 0.00 4.69
176 177 2.742053 CACCTTGTGATTTACCTGTCCG 59.258 50.000 0.00 0.00 35.23 4.79
177 178 4.015872 TCACCTTGTGATTTACCTGTCC 57.984 45.455 0.00 0.00 37.67 4.02
188 189 6.157820 TCCCATTCAAGTATATCACCTTGTGA 59.842 38.462 0.00 0.00 46.90 3.58
189 190 6.356556 TCCCATTCAAGTATATCACCTTGTG 58.643 40.000 8.64 0.00 34.45 3.33
190 191 6.575244 TCCCATTCAAGTATATCACCTTGT 57.425 37.500 8.64 0.00 0.00 3.16
191 192 9.003658 GTATTCCCATTCAAGTATATCACCTTG 57.996 37.037 0.00 0.00 0.00 3.61
192 193 8.164070 GGTATTCCCATTCAAGTATATCACCTT 58.836 37.037 0.00 0.00 0.00 3.50
193 194 7.517604 AGGTATTCCCATTCAAGTATATCACCT 59.482 37.037 0.00 0.00 34.66 4.00
194 195 7.690256 AGGTATTCCCATTCAAGTATATCACC 58.310 38.462 0.00 0.00 34.66 4.02
195 196 9.877178 CTAGGTATTCCCATTCAAGTATATCAC 57.123 37.037 0.00 0.00 34.66 3.06
196 197 9.837681 TCTAGGTATTCCCATTCAAGTATATCA 57.162 33.333 0.00 0.00 34.66 2.15
199 200 9.670442 AGTTCTAGGTATTCCCATTCAAGTATA 57.330 33.333 0.00 0.00 34.66 1.47
200 201 8.568617 AGTTCTAGGTATTCCCATTCAAGTAT 57.431 34.615 0.00 0.00 34.66 2.12
201 202 7.622081 TGAGTTCTAGGTATTCCCATTCAAGTA 59.378 37.037 0.00 0.00 34.66 2.24
202 203 6.443849 TGAGTTCTAGGTATTCCCATTCAAGT 59.556 38.462 0.00 0.00 34.66 3.16
203 204 6.889198 TGAGTTCTAGGTATTCCCATTCAAG 58.111 40.000 0.00 0.00 34.66 3.02
204 205 6.884472 TGAGTTCTAGGTATTCCCATTCAA 57.116 37.500 0.00 0.00 34.66 2.69
205 206 6.846505 AGATGAGTTCTAGGTATTCCCATTCA 59.153 38.462 0.00 0.00 34.66 2.57
206 207 7.309770 AGATGAGTTCTAGGTATTCCCATTC 57.690 40.000 0.00 0.00 34.66 2.67
207 208 8.798975 TTAGATGAGTTCTAGGTATTCCCATT 57.201 34.615 0.00 0.00 38.19 3.16
208 209 8.798975 TTTAGATGAGTTCTAGGTATTCCCAT 57.201 34.615 0.00 0.00 38.19 4.00
209 210 8.651389 CATTTAGATGAGTTCTAGGTATTCCCA 58.349 37.037 0.00 0.00 38.19 4.37
210 211 8.871125 TCATTTAGATGAGTTCTAGGTATTCCC 58.129 37.037 0.00 0.00 38.19 3.97
236 237 9.347240 CCAAGTGAATGAGACCAAATTATATCT 57.653 33.333 0.00 0.00 0.00 1.98
237 238 9.342308 TCCAAGTGAATGAGACCAAATTATATC 57.658 33.333 0.00 0.00 0.00 1.63
238 239 9.699410 TTCCAAGTGAATGAGACCAAATTATAT 57.301 29.630 0.00 0.00 0.00 0.86
239 240 9.527157 TTTCCAAGTGAATGAGACCAAATTATA 57.473 29.630 0.00 0.00 31.67 0.98
240 241 8.421249 TTTCCAAGTGAATGAGACCAAATTAT 57.579 30.769 0.00 0.00 31.67 1.28
241 242 7.831691 TTTCCAAGTGAATGAGACCAAATTA 57.168 32.000 0.00 0.00 31.67 1.40
242 243 6.729690 TTTCCAAGTGAATGAGACCAAATT 57.270 33.333 0.00 0.00 31.67 1.82
243 244 6.494491 TGATTTCCAAGTGAATGAGACCAAAT 59.506 34.615 0.00 0.00 31.67 2.32
244 245 5.832595 TGATTTCCAAGTGAATGAGACCAAA 59.167 36.000 0.00 0.00 31.67 3.28
245 246 5.384336 TGATTTCCAAGTGAATGAGACCAA 58.616 37.500 0.00 0.00 31.67 3.67
246 247 4.984295 TGATTTCCAAGTGAATGAGACCA 58.016 39.130 0.00 0.00 31.67 4.02
247 248 5.964958 TTGATTTCCAAGTGAATGAGACC 57.035 39.130 0.00 0.00 31.67 3.85
248 249 7.706179 TGTTTTTGATTTCCAAGTGAATGAGAC 59.294 33.333 0.00 0.00 35.94 3.36
249 250 7.780064 TGTTTTTGATTTCCAAGTGAATGAGA 58.220 30.769 0.00 0.00 35.94 3.27
250 251 8.422973 TTGTTTTTGATTTCCAAGTGAATGAG 57.577 30.769 0.00 0.00 35.94 2.90
251 252 8.783833 TTTGTTTTTGATTTCCAAGTGAATGA 57.216 26.923 0.00 0.00 35.94 2.57
252 253 9.837525 TTTTTGTTTTTGATTTCCAAGTGAATG 57.162 25.926 0.00 0.00 35.94 2.67
253 254 9.838975 GTTTTTGTTTTTGATTTCCAAGTGAAT 57.161 25.926 0.00 0.00 35.94 2.57
254 255 8.840321 TGTTTTTGTTTTTGATTTCCAAGTGAA 58.160 25.926 0.00 0.00 35.94 3.18
255 256 8.383318 TGTTTTTGTTTTTGATTTCCAAGTGA 57.617 26.923 0.00 0.00 35.94 3.41
256 257 8.900762 GTTGTTTTTGTTTTTGATTTCCAAGTG 58.099 29.630 0.00 0.00 35.94 3.16
257 258 8.079203 GGTTGTTTTTGTTTTTGATTTCCAAGT 58.921 29.630 0.00 0.00 35.94 3.16
258 259 7.540400 GGGTTGTTTTTGTTTTTGATTTCCAAG 59.460 33.333 0.00 0.00 35.94 3.61
259 260 7.014230 TGGGTTGTTTTTGTTTTTGATTTCCAA 59.986 29.630 0.00 0.00 0.00 3.53
260 261 6.490040 TGGGTTGTTTTTGTTTTTGATTTCCA 59.510 30.769 0.00 0.00 0.00 3.53
261 262 6.914259 TGGGTTGTTTTTGTTTTTGATTTCC 58.086 32.000 0.00 0.00 0.00 3.13
262 263 8.026026 ACATGGGTTGTTTTTGTTTTTGATTTC 58.974 29.630 0.00 0.00 33.74 2.17
263 264 7.890515 ACATGGGTTGTTTTTGTTTTTGATTT 58.109 26.923 0.00 0.00 33.74 2.17
264 265 7.175641 TGACATGGGTTGTTTTTGTTTTTGATT 59.824 29.630 0.00 0.00 39.18 2.57
265 266 6.656693 TGACATGGGTTGTTTTTGTTTTTGAT 59.343 30.769 0.00 0.00 39.18 2.57
266 267 5.997746 TGACATGGGTTGTTTTTGTTTTTGA 59.002 32.000 0.00 0.00 39.18 2.69
267 268 6.246420 TGACATGGGTTGTTTTTGTTTTTG 57.754 33.333 0.00 0.00 39.18 2.44
268 269 5.106357 GCTGACATGGGTTGTTTTTGTTTTT 60.106 36.000 0.00 0.00 39.18 1.94
269 270 4.394610 GCTGACATGGGTTGTTTTTGTTTT 59.605 37.500 0.00 0.00 39.18 2.43
270 271 3.938334 GCTGACATGGGTTGTTTTTGTTT 59.062 39.130 0.00 0.00 39.18 2.83
271 272 3.055530 TGCTGACATGGGTTGTTTTTGTT 60.056 39.130 0.00 0.00 39.18 2.83
272 273 2.499289 TGCTGACATGGGTTGTTTTTGT 59.501 40.909 0.00 0.00 39.18 2.83
273 274 2.865551 GTGCTGACATGGGTTGTTTTTG 59.134 45.455 0.00 0.00 39.18 2.44
274 275 2.499289 TGTGCTGACATGGGTTGTTTTT 59.501 40.909 0.00 0.00 39.18 1.94
275 276 2.106566 TGTGCTGACATGGGTTGTTTT 58.893 42.857 0.00 0.00 39.18 2.43
276 277 1.408702 GTGTGCTGACATGGGTTGTTT 59.591 47.619 0.00 0.00 39.18 2.83
277 278 1.032014 GTGTGCTGACATGGGTTGTT 58.968 50.000 0.00 0.00 39.18 2.83
278 279 0.106769 TGTGTGCTGACATGGGTTGT 60.107 50.000 0.00 0.00 42.79 3.32
279 280 0.311790 GTGTGTGCTGACATGGGTTG 59.688 55.000 0.00 0.00 33.63 3.77
280 281 1.165907 CGTGTGTGCTGACATGGGTT 61.166 55.000 0.00 0.00 33.63 4.11
281 282 1.597854 CGTGTGTGCTGACATGGGT 60.598 57.895 0.00 0.00 33.63 4.51
282 283 2.969806 GCGTGTGTGCTGACATGGG 61.970 63.158 0.00 0.00 34.03 4.00
283 284 1.579964 ATGCGTGTGTGCTGACATGG 61.580 55.000 0.00 0.00 34.03 3.66
284 285 0.179207 GATGCGTGTGTGCTGACATG 60.179 55.000 0.00 0.00 36.16 3.21
285 286 0.321034 AGATGCGTGTGTGCTGACAT 60.321 50.000 0.00 0.00 33.63 3.06
286 287 0.532640 AAGATGCGTGTGTGCTGACA 60.533 50.000 0.00 0.00 35.36 3.58
287 288 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
288 289 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
289 290 3.370672 TGTTATAAGATGCGTGTGTGCTG 59.629 43.478 0.00 0.00 35.36 4.41
290 291 3.595173 TGTTATAAGATGCGTGTGTGCT 58.405 40.909 0.00 0.00 35.36 4.40
291 292 4.033932 TGATGTTATAAGATGCGTGTGTGC 59.966 41.667 0.00 0.00 0.00 4.57
292 293 5.063312 TGTGATGTTATAAGATGCGTGTGTG 59.937 40.000 0.00 0.00 0.00 3.82
293 294 5.175127 TGTGATGTTATAAGATGCGTGTGT 58.825 37.500 0.00 0.00 0.00 3.72
294 295 5.717038 TGTGATGTTATAAGATGCGTGTG 57.283 39.130 0.00 0.00 0.00 3.82
295 296 5.466728 GGATGTGATGTTATAAGATGCGTGT 59.533 40.000 0.00 0.00 0.00 4.49
296 297 5.466393 TGGATGTGATGTTATAAGATGCGTG 59.534 40.000 0.00 0.00 0.00 5.34
297 298 5.610398 TGGATGTGATGTTATAAGATGCGT 58.390 37.500 0.00 0.00 0.00 5.24
298 299 6.544038 TTGGATGTGATGTTATAAGATGCG 57.456 37.500 0.00 0.00 0.00 4.73
299 300 8.019669 GTCATTGGATGTGATGTTATAAGATGC 58.980 37.037 0.00 0.00 0.00 3.91
300 301 9.281371 AGTCATTGGATGTGATGTTATAAGATG 57.719 33.333 0.00 0.00 0.00 2.90
308 309 8.906867 CCTTTTATAGTCATTGGATGTGATGTT 58.093 33.333 0.00 0.00 0.00 2.71
309 310 8.055181 ACCTTTTATAGTCATTGGATGTGATGT 58.945 33.333 0.00 0.00 0.00 3.06
310 311 8.347771 CACCTTTTATAGTCATTGGATGTGATG 58.652 37.037 0.00 0.00 0.00 3.07
311 312 8.274322 TCACCTTTTATAGTCATTGGATGTGAT 58.726 33.333 0.00 0.00 0.00 3.06
312 313 7.629157 TCACCTTTTATAGTCATTGGATGTGA 58.371 34.615 0.00 0.00 0.00 3.58
313 314 7.864108 TCACCTTTTATAGTCATTGGATGTG 57.136 36.000 0.00 0.00 0.00 3.21
314 315 8.906867 CATTCACCTTTTATAGTCATTGGATGT 58.093 33.333 0.00 0.00 0.00 3.06
315 316 9.123902 TCATTCACCTTTTATAGTCATTGGATG 57.876 33.333 0.00 0.00 0.00 3.51
316 317 9.347240 CTCATTCACCTTTTATAGTCATTGGAT 57.653 33.333 0.00 0.00 0.00 3.41
317 318 8.548025 TCTCATTCACCTTTTATAGTCATTGGA 58.452 33.333 0.00 0.00 0.00 3.53
318 319 8.616076 GTCTCATTCACCTTTTATAGTCATTGG 58.384 37.037 0.00 0.00 0.00 3.16
319 320 8.616076 GGTCTCATTCACCTTTTATAGTCATTG 58.384 37.037 0.00 0.00 0.00 2.82
320 321 8.328758 TGGTCTCATTCACCTTTTATAGTCATT 58.671 33.333 0.00 0.00 34.66 2.57
321 322 7.861629 TGGTCTCATTCACCTTTTATAGTCAT 58.138 34.615 0.00 0.00 34.66 3.06
322 323 7.252612 TGGTCTCATTCACCTTTTATAGTCA 57.747 36.000 0.00 0.00 34.66 3.41
323 324 8.561738 TTTGGTCTCATTCACCTTTTATAGTC 57.438 34.615 0.00 0.00 34.66 2.59
324 325 9.533831 AATTTGGTCTCATTCACCTTTTATAGT 57.466 29.630 0.00 0.00 34.66 2.12
330 331 9.927081 AGATATAATTTGGTCTCATTCACCTTT 57.073 29.630 0.00 0.00 34.66 3.11
331 332 9.566432 GAGATATAATTTGGTCTCATTCACCTT 57.434 33.333 8.11 0.00 37.60 3.50
332 333 8.717717 TGAGATATAATTTGGTCTCATTCACCT 58.282 33.333 10.50 0.00 41.40 4.00
333 334 8.908786 TGAGATATAATTTGGTCTCATTCACC 57.091 34.615 10.50 0.00 41.40 4.02
356 357 5.682234 TTTGCCAGAACTCATCTAGATGA 57.318 39.130 29.17 29.17 44.83 2.92
357 358 5.879223 AGTTTTGCCAGAACTCATCTAGATG 59.121 40.000 24.32 24.32 36.32 2.90
358 359 5.879223 CAGTTTTGCCAGAACTCATCTAGAT 59.121 40.000 0.00 0.00 36.32 1.98
359 360 5.221722 ACAGTTTTGCCAGAACTCATCTAGA 60.222 40.000 0.00 0.00 36.32 2.43
360 361 4.999950 ACAGTTTTGCCAGAACTCATCTAG 59.000 41.667 0.00 0.00 36.32 2.43
361 362 4.973168 ACAGTTTTGCCAGAACTCATCTA 58.027 39.130 0.00 0.00 36.32 1.98
362 363 3.825328 ACAGTTTTGCCAGAACTCATCT 58.175 40.909 0.00 0.00 39.68 2.90
363 364 4.757149 AGTACAGTTTTGCCAGAACTCATC 59.243 41.667 0.00 0.00 35.26 2.92
364 365 4.718961 AGTACAGTTTTGCCAGAACTCAT 58.281 39.130 0.00 0.00 35.26 2.90
365 366 4.150897 AGTACAGTTTTGCCAGAACTCA 57.849 40.909 0.00 0.00 35.26 3.41
366 367 4.574828 TCAAGTACAGTTTTGCCAGAACTC 59.425 41.667 0.00 0.00 35.26 3.01
367 368 4.523083 TCAAGTACAGTTTTGCCAGAACT 58.477 39.130 0.00 0.00 37.82 3.01
368 369 4.893424 TCAAGTACAGTTTTGCCAGAAC 57.107 40.909 0.00 0.00 0.00 3.01
369 370 7.759489 ATATTCAAGTACAGTTTTGCCAGAA 57.241 32.000 0.00 0.00 0.00 3.02
370 371 7.759489 AATATTCAAGTACAGTTTTGCCAGA 57.241 32.000 0.00 0.00 0.00 3.86
381 382 9.219603 GCAGCTGGATATAAATATTCAAGTACA 57.780 33.333 17.12 0.00 28.25 2.90
382 383 9.219603 TGCAGCTGGATATAAATATTCAAGTAC 57.780 33.333 17.12 0.00 28.25 2.73
428 429 4.655762 AGTGTCCTGCTTTTCTTTTTCC 57.344 40.909 0.00 0.00 0.00 3.13
429 430 7.480810 TCTTTAGTGTCCTGCTTTTCTTTTTC 58.519 34.615 0.00 0.00 0.00 2.29
430 431 7.404671 TCTTTAGTGTCCTGCTTTTCTTTTT 57.595 32.000 0.00 0.00 0.00 1.94
435 436 5.992217 TCTCTTCTTTAGTGTCCTGCTTTTC 59.008 40.000 0.00 0.00 0.00 2.29
545 546 2.225491 ACCATTGAATTTCGTGTCACCG 59.775 45.455 0.00 0.00 0.00 4.94
583 584 3.402628 AGCACAAACGTACTCCTTGAT 57.597 42.857 4.02 0.00 0.00 2.57
632 633 1.593265 GAAATGCCAAGCCCTGTGG 59.407 57.895 0.00 0.00 39.33 4.17
643 644 3.194116 TGCTGATCTCTTTTGGAAATGCC 59.806 43.478 0.00 0.00 37.10 4.40
696 698 5.496387 CATGCACTAGAAAGTTCTTATGCG 58.504 41.667 17.50 7.00 43.91 4.73
725 727 4.106197 CGTCAGTTCAGCCTATTCACTAC 58.894 47.826 0.00 0.00 0.00 2.73
727 729 2.563179 ACGTCAGTTCAGCCTATTCACT 59.437 45.455 0.00 0.00 0.00 3.41
733 764 2.416836 GCATGTACGTCAGTTCAGCCTA 60.417 50.000 0.00 0.00 31.28 3.93
765 796 2.608752 GCAGCAAAACATGGAAGTGAGG 60.609 50.000 0.00 0.00 0.00 3.86
794 835 1.795286 GTTCTCTTCCAGCAGACAACG 59.205 52.381 0.00 0.00 0.00 4.10
832 875 0.456653 GCGCACATGGTTTGGATCAC 60.457 55.000 0.30 0.00 0.00 3.06
884 927 2.440247 GTGGGGTAGTGCATGGCC 60.440 66.667 0.00 0.00 0.00 5.36
926 969 6.635755 ACAGAAGAATGTAGAAGAAGGCTAC 58.364 40.000 0.00 0.00 38.90 3.58
927 970 6.859112 ACAGAAGAATGTAGAAGAAGGCTA 57.141 37.500 0.00 0.00 0.00 3.93
950 993 4.543692 GCTCGTCGAATTTATAGGTGCTA 58.456 43.478 0.00 0.00 0.00 3.49
954 997 2.861360 GCGGCTCGTCGAATTTATAGGT 60.861 50.000 0.00 0.00 0.00 3.08
996 1049 3.099171 CTGGGGCTTTCCATGGGA 58.901 61.111 13.02 0.00 36.05 4.37
999 1052 1.593265 GTTGCTGGGGCTTTCCATG 59.407 57.895 0.00 0.00 39.59 3.66
1004 1057 1.040339 TTTGTCGTTGCTGGGGCTTT 61.040 50.000 0.00 0.00 39.59 3.51
1052 1105 1.153489 CCTCTGTCCATGACTGCCG 60.153 63.158 0.00 0.00 32.74 5.69
1054 1107 0.321919 TTGCCTCTGTCCATGACTGC 60.322 55.000 0.00 0.00 32.74 4.40
1058 1111 1.300963 GCCTTGCCTCTGTCCATGA 59.699 57.895 0.00 0.00 0.00 3.07
1131 1184 2.627737 GGACTCGCTGTCGTCCTGT 61.628 63.158 0.00 0.00 46.24 4.00
1245 1298 2.380410 CCCGGTTGCTCTTCGTTCG 61.380 63.158 0.00 0.00 0.00 3.95
1251 1304 2.348998 CTCTGCCCGGTTGCTCTT 59.651 61.111 0.00 0.00 0.00 2.85
1274 1327 3.953775 CTTGGGCCAGGTCCGTGT 61.954 66.667 6.23 0.00 0.00 4.49
1539 1629 3.299190 GATCCCGGGCTCTCGAGG 61.299 72.222 18.49 4.50 0.00 4.63
1554 1650 1.823295 CCCGTGGAGGAACGATGAT 59.177 57.895 0.00 0.00 46.49 2.45
1557 1653 2.683933 AGCCCGTGGAGGAACGAT 60.684 61.111 0.00 0.00 46.49 3.73
1702 1798 3.970410 CTGCAGGCCCCACCAGAA 61.970 66.667 5.57 0.00 43.14 3.02
1752 1848 1.673808 GGTCGTGAGGCTTCCGGTAT 61.674 60.000 0.00 0.00 34.89 2.73
1830 1926 1.911293 GCTTGCGCATCTGGTCGAAA 61.911 55.000 12.75 0.00 35.78 3.46
1986 2082 2.963371 GGCTCCTTGTCGTCGTCT 59.037 61.111 0.00 0.00 0.00 4.18
2006 2111 4.699522 GGCCGTGTTCCGCTTCCT 62.700 66.667 0.00 0.00 34.38 3.36
2021 2126 4.077188 GCTTGTCGACGTGCAGGC 62.077 66.667 22.13 9.41 0.00 4.85
2048 2153 2.432628 CACTCTCGTTGCCGACCC 60.433 66.667 0.00 0.00 38.40 4.46
2064 2169 1.252215 TGTCGTCATTACCTCCCGCA 61.252 55.000 0.00 0.00 0.00 5.69
2073 2178 2.094390 GCCACTACCACTGTCGTCATTA 60.094 50.000 0.00 0.00 0.00 1.90
2078 2183 2.927580 CGGCCACTACCACTGTCGT 61.928 63.158 2.24 0.00 0.00 4.34
2088 2193 4.715130 ACCAGCTCCCGGCCACTA 62.715 66.667 2.24 0.00 43.05 2.74
2238 2343 1.227674 GGTATTGCTCTGCTCCCCG 60.228 63.158 0.00 0.00 0.00 5.73
2340 2445 1.807165 CGGGCAGTCACTCATGTCG 60.807 63.158 0.00 0.00 0.00 4.35
2370 2475 2.971598 CGAACTCCCCCAGTGCCAT 61.972 63.158 0.00 0.00 34.56 4.40
2428 2533 5.070981 ACTCCATAATCCACATCGTCTTGAT 59.929 40.000 0.00 0.00 38.01 2.57
2438 2543 9.100197 ACATATATACACACTCCATAATCCACA 57.900 33.333 0.00 0.00 0.00 4.17
2498 2603 3.370103 CCCTAGCCACGTCCTAATCAAAA 60.370 47.826 0.00 0.00 0.00 2.44
2528 2633 0.969894 GATCATACCAGTAGGCGCCT 59.030 55.000 34.85 34.85 39.06 5.52
2638 2770 3.992943 ATTTAACAGGATCACGTGGGA 57.007 42.857 17.00 0.00 36.39 4.37
2659 2792 2.159366 CGTGACGACAAGATCTAGGCTT 60.159 50.000 0.00 0.00 0.00 4.35
2749 2883 4.260620 CGTGAGAAACTCAACGGTGAAAAT 60.261 41.667 3.93 0.00 42.46 1.82
2827 2968 1.613255 CCATCGTACCCAAAGTTGCCT 60.613 52.381 0.00 0.00 0.00 4.75
2841 2982 3.071602 AGCATTATAGTTGCCTCCATCGT 59.928 43.478 6.21 0.00 41.06 3.73
2978 3124 2.362397 CACGGATACACATAGTCCAGCT 59.638 50.000 0.00 0.00 32.23 4.24
3074 3222 6.767524 TTTATAGGCAACCGAACATCAATT 57.232 33.333 0.00 0.00 37.17 2.32
3302 3450 7.706607 TCATCTACCATCGATACTCTTTTTGTG 59.293 37.037 0.00 0.00 0.00 3.33
3309 3457 6.491745 ACAATGTCATCTACCATCGATACTCT 59.508 38.462 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.