Multiple sequence alignment - TraesCS2A01G342300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G342300 chr2A 100.000 3581 0 0 1 3581 579439281 579442861 0.000000e+00 6613.0
1 TraesCS2A01G342300 chr2A 84.239 1491 202 19 1010 2488 701018952 701017483 0.000000e+00 1421.0
2 TraesCS2A01G342300 chr2A 94.822 618 32 0 1 618 579335681 579336298 0.000000e+00 965.0
3 TraesCS2A01G342300 chr2A 91.182 533 41 6 90 618 233284917 233285447 0.000000e+00 719.0
4 TraesCS2A01G342300 chr2D 94.477 1865 69 17 752 2593 411726591 411728444 0.000000e+00 2843.0
5 TraesCS2A01G342300 chr2D 94.662 1817 54 18 799 2593 411953807 411955602 0.000000e+00 2778.0
6 TraesCS2A01G342300 chr2D 94.262 1464 54 4 1134 2594 411344499 411345935 0.000000e+00 2211.0
7 TraesCS2A01G342300 chr2D 93.977 880 45 4 965 1844 411678309 411679180 0.000000e+00 1325.0
8 TraesCS2A01G342300 chr2D 97.082 754 21 1 1840 2593 411688627 411689379 0.000000e+00 1269.0
9 TraesCS2A01G342300 chr2D 85.738 1199 160 10 1007 2202 561288654 561287464 0.000000e+00 1256.0
10 TraesCS2A01G342300 chr2D 85.935 647 42 15 2633 3266 411955738 411956348 0.000000e+00 645.0
11 TraesCS2A01G342300 chr2D 89.244 344 28 6 797 1136 411342904 411343242 4.270000e-114 422.0
12 TraesCS2A01G342300 chr2D 83.654 312 39 7 3265 3567 180884192 180884500 2.100000e-72 283.0
13 TraesCS2A01G342300 chr2D 88.341 223 19 4 752 973 411614456 411614672 9.860000e-66 261.0
14 TraesCS2A01G342300 chr2D 88.690 168 16 2 2597 2764 411728665 411728829 6.060000e-48 202.0
15 TraesCS2A01G342300 chr2B 96.301 1730 56 5 864 2593 485432832 485434553 0.000000e+00 2833.0
16 TraesCS2A01G342300 chr2B 96.211 1425 46 5 864 2288 485299618 485301034 0.000000e+00 2326.0
17 TraesCS2A01G342300 chr2B 83.931 1506 202 17 1008 2496 670340854 670342336 0.000000e+00 1404.0
18 TraesCS2A01G342300 chr2B 83.315 923 123 15 1591 2496 670445784 670446692 0.000000e+00 822.0
19 TraesCS2A01G342300 chr2B 96.578 263 9 0 2331 2593 485301035 485301297 1.530000e-118 436.0
20 TraesCS2A01G342300 chr2B 84.697 379 24 8 2880 3248 485306759 485307113 7.360000e-92 348.0
21 TraesCS2A01G342300 chr2B 92.949 156 6 1 2633 2788 485301433 485301583 4.650000e-54 222.0
22 TraesCS2A01G342300 chr2B 92.308 156 9 2 2610 2763 485435206 485435360 6.020000e-53 219.0
23 TraesCS2A01G342300 chr2B 85.806 155 18 3 2754 2908 485437429 485437579 1.030000e-35 161.0
24 TraesCS2A01G342300 chr2B 94.030 67 4 0 3000 3066 485441996 485442062 6.330000e-18 102.0
25 TraesCS2A01G342300 chr2B 89.655 58 5 1 3209 3266 485442098 485442154 4.960000e-09 73.1
26 TraesCS2A01G342300 chr2B 100.000 29 0 0 2783 2811 485306721 485306749 2.000000e-03 54.7
27 TraesCS2A01G342300 chrUn 84.172 1491 203 16 1010 2488 210396988 210395519 0.000000e+00 1415.0
28 TraesCS2A01G342300 chrUn 90.750 627 44 8 5 618 145536007 145535382 0.000000e+00 824.0
29 TraesCS2A01G342300 chr5A 90.491 631 47 6 1 618 262648055 262647425 0.000000e+00 821.0
30 TraesCS2A01G342300 chr1A 89.855 621 59 3 2 618 222219145 222218525 0.000000e+00 795.0
31 TraesCS2A01G342300 chr1A 89.577 614 47 10 19 618 219901866 219901256 0.000000e+00 763.0
32 TraesCS2A01G342300 chr1A 89.414 614 50 7 19 618 219951182 219950570 0.000000e+00 760.0
33 TraesCS2A01G342300 chr1A 90.609 575 49 5 51 621 396945886 396945313 0.000000e+00 758.0
34 TraesCS2A01G342300 chr4A 88.301 624 44 15 19 618 274821290 274821908 0.000000e+00 721.0
35 TraesCS2A01G342300 chr4A 83.046 637 47 16 19 621 285109635 285109026 4.100000e-144 521.0
36 TraesCS2A01G342300 chr4D 87.662 308 31 6 3265 3567 4140737 4141042 5.690000e-93 351.0
37 TraesCS2A01G342300 chr4B 85.410 329 37 9 3262 3581 140603360 140603034 7.410000e-87 331.0
38 TraesCS2A01G342300 chr1D 84.177 316 33 16 3264 3566 11975501 11975812 1.260000e-74 291.0
39 TraesCS2A01G342300 chr1D 82.515 326 43 11 3264 3579 448221204 448221525 1.270000e-69 274.0
40 TraesCS2A01G342300 chr6D 83.540 322 39 10 3264 3577 9550032 9550347 4.520000e-74 289.0
41 TraesCS2A01G342300 chr5D 83.654 312 41 7 3264 3567 527145810 527145501 5.850000e-73 285.0
42 TraesCS2A01G342300 chr3D 83.025 324 45 7 3265 3581 527858998 527858678 5.850000e-73 285.0
43 TraesCS2A01G342300 chr6A 83.125 320 42 8 3265 3577 10594743 10595057 7.570000e-72 281.0
44 TraesCS2A01G342300 chr7A 92.683 123 7 2 492 614 361283998 361283878 3.670000e-40 176.0
45 TraesCS2A01G342300 chr7D 87.000 100 13 0 651 750 372829779 372829878 2.920000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G342300 chr2A 579439281 579442861 3580 False 6613.000000 6613 100.000000 1 3581 1 chr2A.!!$F3 3580
1 TraesCS2A01G342300 chr2A 701017483 701018952 1469 True 1421.000000 1421 84.239000 1010 2488 1 chr2A.!!$R1 1478
2 TraesCS2A01G342300 chr2A 579335681 579336298 617 False 965.000000 965 94.822000 1 618 1 chr2A.!!$F2 617
3 TraesCS2A01G342300 chr2A 233284917 233285447 530 False 719.000000 719 91.182000 90 618 1 chr2A.!!$F1 528
4 TraesCS2A01G342300 chr2D 411953807 411956348 2541 False 1711.500000 2778 90.298500 799 3266 2 chr2D.!!$F7 2467
5 TraesCS2A01G342300 chr2D 411726591 411728829 2238 False 1522.500000 2843 91.583500 752 2764 2 chr2D.!!$F6 2012
6 TraesCS2A01G342300 chr2D 411678309 411679180 871 False 1325.000000 1325 93.977000 965 1844 1 chr2D.!!$F3 879
7 TraesCS2A01G342300 chr2D 411342904 411345935 3031 False 1316.500000 2211 91.753000 797 2594 2 chr2D.!!$F5 1797
8 TraesCS2A01G342300 chr2D 411688627 411689379 752 False 1269.000000 1269 97.082000 1840 2593 1 chr2D.!!$F4 753
9 TraesCS2A01G342300 chr2D 561287464 561288654 1190 True 1256.000000 1256 85.738000 1007 2202 1 chr2D.!!$R1 1195
10 TraesCS2A01G342300 chr2B 670340854 670342336 1482 False 1404.000000 1404 83.931000 1008 2496 1 chr2B.!!$F1 1488
11 TraesCS2A01G342300 chr2B 485432832 485437579 4747 False 1071.000000 2833 91.471667 864 2908 3 chr2B.!!$F5 2044
12 TraesCS2A01G342300 chr2B 485299618 485301583 1965 False 994.666667 2326 95.246000 864 2788 3 chr2B.!!$F3 1924
13 TraesCS2A01G342300 chr2B 670445784 670446692 908 False 822.000000 822 83.315000 1591 2496 1 chr2B.!!$F2 905
14 TraesCS2A01G342300 chrUn 210395519 210396988 1469 True 1415.000000 1415 84.172000 1010 2488 1 chrUn.!!$R2 1478
15 TraesCS2A01G342300 chrUn 145535382 145536007 625 True 824.000000 824 90.750000 5 618 1 chrUn.!!$R1 613
16 TraesCS2A01G342300 chr5A 262647425 262648055 630 True 821.000000 821 90.491000 1 618 1 chr5A.!!$R1 617
17 TraesCS2A01G342300 chr1A 222218525 222219145 620 True 795.000000 795 89.855000 2 618 1 chr1A.!!$R3 616
18 TraesCS2A01G342300 chr1A 219901256 219901866 610 True 763.000000 763 89.577000 19 618 1 chr1A.!!$R1 599
19 TraesCS2A01G342300 chr1A 219950570 219951182 612 True 760.000000 760 89.414000 19 618 1 chr1A.!!$R2 599
20 TraesCS2A01G342300 chr1A 396945313 396945886 573 True 758.000000 758 90.609000 51 621 1 chr1A.!!$R4 570
21 TraesCS2A01G342300 chr4A 274821290 274821908 618 False 721.000000 721 88.301000 19 618 1 chr4A.!!$F1 599
22 TraesCS2A01G342300 chr4A 285109026 285109635 609 True 521.000000 521 83.046000 19 621 1 chr4A.!!$R1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1062 0.034186 CCCTATCAGCAGCCCACAAA 60.034 55.0 0.0 0.0 0.0 2.83 F
999 1069 1.059913 AGCAGCCCACAAACTAGACT 58.940 50.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 3686 0.103390 TTGAACTCCTGCGTCGTCAA 59.897 50.0 0.0 0.0 0.0 3.18 R
2582 3948 0.366871 CGTCGCCTTGTCATTTCTCG 59.633 55.0 0.0 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 3.124921 GTGCGCACGGGCTTGTAT 61.125 61.111 26.77 0.00 38.10 2.29
224 259 0.042731 TCCTCTTCGTCCCCTCCATT 59.957 55.000 0.00 0.00 0.00 3.16
235 270 2.047830 CCCCTCCATTCACCTACCTAC 58.952 57.143 0.00 0.00 0.00 3.18
339 384 6.003950 CCTCTAGAAGATCAAGACCTCCTAG 58.996 48.000 0.00 0.00 0.00 3.02
447 498 7.504926 TTGGGATGAACTAGTACCTTGTATT 57.495 36.000 0.00 0.00 0.00 1.89
503 554 5.525378 CCTTGTATGTTCTTGGATCTAGCAC 59.475 44.000 0.00 0.00 0.00 4.40
546 606 7.440856 AGTCAATTGAGTGTTTTCTCTCTCTTC 59.559 37.037 15.07 0.00 40.04 2.87
548 608 8.642432 TCAATTGAGTGTTTTCTCTCTCTTCTA 58.358 33.333 3.38 0.00 40.04 2.10
597 657 6.463614 CCCTCTAATTCGTGAAAGATCTCCAT 60.464 42.308 0.00 0.00 0.00 3.41
621 681 0.535553 GGTTCCACCCTACAACGCAA 60.536 55.000 0.00 0.00 30.04 4.85
622 682 1.310904 GTTCCACCCTACAACGCAAA 58.689 50.000 0.00 0.00 0.00 3.68
623 683 1.883926 GTTCCACCCTACAACGCAAAT 59.116 47.619 0.00 0.00 0.00 2.32
624 684 1.816074 TCCACCCTACAACGCAAATC 58.184 50.000 0.00 0.00 0.00 2.17
625 685 1.072489 TCCACCCTACAACGCAAATCA 59.928 47.619 0.00 0.00 0.00 2.57
626 686 2.091541 CCACCCTACAACGCAAATCAT 58.908 47.619 0.00 0.00 0.00 2.45
627 687 2.159393 CCACCCTACAACGCAAATCATG 60.159 50.000 0.00 0.00 0.00 3.07
628 688 2.091541 ACCCTACAACGCAAATCATGG 58.908 47.619 0.00 0.00 0.00 3.66
629 689 1.405105 CCCTACAACGCAAATCATGGG 59.595 52.381 0.00 0.00 46.83 4.00
640 700 6.748333 CGCAAATCATGGGTATATGAAGAT 57.252 37.500 0.00 0.00 40.21 2.40
641 701 6.779117 CGCAAATCATGGGTATATGAAGATC 58.221 40.000 0.00 0.00 40.21 2.75
642 702 6.596888 CGCAAATCATGGGTATATGAAGATCT 59.403 38.462 0.00 0.00 40.21 2.75
643 703 7.201591 CGCAAATCATGGGTATATGAAGATCTC 60.202 40.741 0.00 0.00 40.21 2.75
644 704 7.066766 GCAAATCATGGGTATATGAAGATCTCC 59.933 40.741 0.00 0.00 40.21 3.71
645 705 7.819521 AATCATGGGTATATGAAGATCTCCA 57.180 36.000 0.00 0.00 40.21 3.86
646 706 6.611613 TCATGGGTATATGAAGATCTCCAC 57.388 41.667 0.00 0.00 34.32 4.02
647 707 6.326161 TCATGGGTATATGAAGATCTCCACT 58.674 40.000 0.00 0.00 34.32 4.00
648 708 6.789457 TCATGGGTATATGAAGATCTCCACTT 59.211 38.462 0.00 0.00 34.32 3.16
649 709 7.955750 TCATGGGTATATGAAGATCTCCACTTA 59.044 37.037 0.00 0.00 34.32 2.24
650 710 8.766476 CATGGGTATATGAAGATCTCCACTTAT 58.234 37.037 0.00 2.65 0.00 1.73
651 711 8.138928 TGGGTATATGAAGATCTCCACTTATG 57.861 38.462 0.00 0.00 0.00 1.90
652 712 7.734865 TGGGTATATGAAGATCTCCACTTATGT 59.265 37.037 0.00 0.00 0.00 2.29
653 713 8.254508 GGGTATATGAAGATCTCCACTTATGTC 58.745 40.741 0.00 0.00 0.00 3.06
654 714 7.971168 GGTATATGAAGATCTCCACTTATGTCG 59.029 40.741 0.00 0.00 0.00 4.35
655 715 4.655762 TGAAGATCTCCACTTATGTCGG 57.344 45.455 0.00 0.00 0.00 4.79
656 716 3.384789 TGAAGATCTCCACTTATGTCGGG 59.615 47.826 0.00 0.00 0.00 5.14
657 717 1.689273 AGATCTCCACTTATGTCGGGC 59.311 52.381 0.00 0.00 0.00 6.13
658 718 0.389391 ATCTCCACTTATGTCGGGCG 59.611 55.000 0.00 0.00 0.00 6.13
659 719 1.883084 CTCCACTTATGTCGGGCGC 60.883 63.158 0.00 0.00 0.00 6.53
660 720 2.895372 CCACTTATGTCGGGCGCC 60.895 66.667 21.18 21.18 0.00 6.53
661 721 2.125310 CACTTATGTCGGGCGCCA 60.125 61.111 30.85 7.96 0.00 5.69
662 722 2.125269 ACTTATGTCGGGCGCCAC 60.125 61.111 30.85 19.79 0.00 5.01
663 723 2.125310 CTTATGTCGGGCGCCACA 60.125 61.111 30.85 25.21 0.00 4.17
664 724 2.435234 TTATGTCGGGCGCCACAC 60.435 61.111 30.85 23.52 0.00 3.82
665 725 3.241515 TTATGTCGGGCGCCACACA 62.242 57.895 30.85 28.37 0.00 3.72
666 726 2.733319 TTATGTCGGGCGCCACACAA 62.733 55.000 30.85 17.84 0.00 3.33
667 727 2.733319 TATGTCGGGCGCCACACAAA 62.733 55.000 30.85 11.18 0.00 2.83
668 728 3.587933 GTCGGGCGCCACACAAAA 61.588 61.111 30.85 1.26 0.00 2.44
669 729 2.829003 TCGGGCGCCACACAAAAA 60.829 55.556 30.85 0.05 0.00 1.94
688 748 5.508200 AAAAAGTCAGCCACGTGAAATAA 57.492 34.783 19.30 0.00 0.00 1.40
689 749 5.705609 AAAAGTCAGCCACGTGAAATAAT 57.294 34.783 19.30 0.00 0.00 1.28
690 750 5.705609 AAAGTCAGCCACGTGAAATAATT 57.294 34.783 19.30 2.47 0.00 1.40
691 751 5.705609 AAGTCAGCCACGTGAAATAATTT 57.294 34.783 19.30 0.19 0.00 1.82
692 752 6.811253 AAGTCAGCCACGTGAAATAATTTA 57.189 33.333 19.30 0.00 0.00 1.40
693 753 6.811253 AGTCAGCCACGTGAAATAATTTAA 57.189 33.333 19.30 0.00 0.00 1.52
694 754 6.608610 AGTCAGCCACGTGAAATAATTTAAC 58.391 36.000 19.30 1.34 0.00 2.01
695 755 5.506832 GTCAGCCACGTGAAATAATTTAACG 59.493 40.000 19.30 6.45 35.94 3.18
696 756 4.791163 CAGCCACGTGAAATAATTTAACGG 59.209 41.667 19.30 0.00 34.85 4.44
697 757 3.544682 GCCACGTGAAATAATTTAACGGC 59.455 43.478 19.30 2.07 34.85 5.68
698 758 4.099824 CCACGTGAAATAATTTAACGGCC 58.900 43.478 19.30 0.00 34.85 6.13
699 759 4.379603 CCACGTGAAATAATTTAACGGCCA 60.380 41.667 19.30 0.00 34.85 5.36
700 760 4.791163 CACGTGAAATAATTTAACGGCCAG 59.209 41.667 10.90 0.00 34.85 4.85
701 761 4.456566 ACGTGAAATAATTTAACGGCCAGT 59.543 37.500 2.24 0.00 34.85 4.00
702 762 5.048573 ACGTGAAATAATTTAACGGCCAGTT 60.049 36.000 15.51 15.51 46.36 3.16
703 763 5.510323 CGTGAAATAATTTAACGGCCAGTTC 59.490 40.000 14.79 2.90 43.06 3.01
704 764 6.383415 GTGAAATAATTTAACGGCCAGTTCA 58.617 36.000 14.79 5.39 43.06 3.18
705 765 7.033185 GTGAAATAATTTAACGGCCAGTTCAT 58.967 34.615 14.79 7.46 43.06 2.57
706 766 7.544217 GTGAAATAATTTAACGGCCAGTTCATT 59.456 33.333 14.79 15.25 43.06 2.57
707 767 7.757624 TGAAATAATTTAACGGCCAGTTCATTC 59.242 33.333 14.79 10.65 43.06 2.67
708 768 7.404671 AATAATTTAACGGCCAGTTCATTCT 57.595 32.000 14.79 6.74 43.06 2.40
709 769 8.514330 AATAATTTAACGGCCAGTTCATTCTA 57.486 30.769 14.79 4.71 43.06 2.10
710 770 8.691661 ATAATTTAACGGCCAGTTCATTCTAT 57.308 30.769 14.79 6.34 43.06 1.98
711 771 5.811399 TTTAACGGCCAGTTCATTCTATG 57.189 39.130 14.79 0.00 43.06 2.23
712 772 3.627395 AACGGCCAGTTCATTCTATGA 57.373 42.857 2.24 0.00 39.16 2.15
713 773 3.845781 ACGGCCAGTTCATTCTATGAT 57.154 42.857 2.24 0.00 39.39 2.45
714 774 4.156455 ACGGCCAGTTCATTCTATGATT 57.844 40.909 2.24 0.00 39.39 2.57
715 775 4.526970 ACGGCCAGTTCATTCTATGATTT 58.473 39.130 2.24 0.00 39.39 2.17
716 776 4.336433 ACGGCCAGTTCATTCTATGATTTG 59.664 41.667 2.24 0.00 39.39 2.32
717 777 4.576053 CGGCCAGTTCATTCTATGATTTGA 59.424 41.667 2.24 0.00 39.39 2.69
718 778 5.240183 CGGCCAGTTCATTCTATGATTTGAT 59.760 40.000 2.24 0.00 39.39 2.57
719 779 6.238842 CGGCCAGTTCATTCTATGATTTGATT 60.239 38.462 2.24 0.00 39.39 2.57
720 780 7.495055 GGCCAGTTCATTCTATGATTTGATTT 58.505 34.615 0.00 0.00 39.39 2.17
721 781 7.650903 GGCCAGTTCATTCTATGATTTGATTTC 59.349 37.037 0.00 0.00 39.39 2.17
722 782 8.192774 GCCAGTTCATTCTATGATTTGATTTCA 58.807 33.333 0.00 0.00 39.39 2.69
727 787 9.955208 TTCATTCTATGATTTGATTTCATTCCG 57.045 29.630 0.00 0.00 39.39 4.30
728 788 9.341078 TCATTCTATGATTTGATTTCATTCCGA 57.659 29.630 0.00 0.00 35.50 4.55
729 789 9.608617 CATTCTATGATTTGATTTCATTCCGAG 57.391 33.333 0.00 0.00 35.50 4.63
730 790 7.734924 TCTATGATTTGATTTCATTCCGAGG 57.265 36.000 0.00 0.00 35.50 4.63
731 791 7.282585 TCTATGATTTGATTTCATTCCGAGGT 58.717 34.615 0.00 0.00 35.50 3.85
732 792 5.818136 TGATTTGATTTCATTCCGAGGTC 57.182 39.130 0.00 0.00 0.00 3.85
733 793 5.252547 TGATTTGATTTCATTCCGAGGTCA 58.747 37.500 0.00 0.00 0.00 4.02
734 794 5.709631 TGATTTGATTTCATTCCGAGGTCAA 59.290 36.000 0.00 0.00 31.09 3.18
735 795 6.208402 TGATTTGATTTCATTCCGAGGTCAAA 59.792 34.615 0.00 0.00 40.26 2.69
736 796 6.398234 TTTGATTTCATTCCGAGGTCAAAA 57.602 33.333 0.00 0.00 36.60 2.44
737 797 6.588719 TTGATTTCATTCCGAGGTCAAAAT 57.411 33.333 0.00 0.00 30.45 1.82
738 798 6.588719 TGATTTCATTCCGAGGTCAAAATT 57.411 33.333 0.00 0.00 0.00 1.82
739 799 6.389091 TGATTTCATTCCGAGGTCAAAATTG 58.611 36.000 0.00 0.00 0.00 2.32
740 800 5.782893 TTTCATTCCGAGGTCAAAATTGT 57.217 34.783 0.00 0.00 0.00 2.71
741 801 5.371115 TTCATTCCGAGGTCAAAATTGTC 57.629 39.130 0.00 0.00 0.00 3.18
742 802 4.393834 TCATTCCGAGGTCAAAATTGTCA 58.606 39.130 0.00 0.00 0.00 3.58
743 803 4.824537 TCATTCCGAGGTCAAAATTGTCAA 59.175 37.500 0.00 0.00 0.00 3.18
744 804 5.300539 TCATTCCGAGGTCAAAATTGTCAAA 59.699 36.000 0.00 0.00 0.00 2.69
745 805 5.782893 TTCCGAGGTCAAAATTGTCAAAT 57.217 34.783 0.00 0.00 0.00 2.32
746 806 5.782893 TCCGAGGTCAAAATTGTCAAATT 57.217 34.783 0.00 0.00 37.61 1.82
747 807 6.155475 TCCGAGGTCAAAATTGTCAAATTT 57.845 33.333 0.00 0.00 45.81 1.82
748 808 5.982516 TCCGAGGTCAAAATTGTCAAATTTG 59.017 36.000 16.75 16.75 43.63 2.32
749 809 5.333263 CCGAGGTCAAAATTGTCAAATTTGC 60.333 40.000 17.69 13.41 43.63 3.68
750 810 5.233902 CGAGGTCAAAATTGTCAAATTTGCA 59.766 36.000 17.69 11.56 43.63 4.08
751 811 6.073657 CGAGGTCAAAATTGTCAAATTTGCAT 60.074 34.615 17.69 12.02 43.63 3.96
752 812 6.961576 AGGTCAAAATTGTCAAATTTGCATG 58.038 32.000 17.69 9.56 43.63 4.06
753 813 5.626132 GGTCAAAATTGTCAAATTTGCATGC 59.374 36.000 17.69 11.82 43.63 4.06
789 849 6.155475 TCTACCAAATGAAACCAAAACCTG 57.845 37.500 0.00 0.00 0.00 4.00
791 851 2.877786 CCAAATGAAACCAAAACCTGCC 59.122 45.455 0.00 0.00 0.00 4.85
836 897 1.675641 GGCTTCGGACTGCAACCAT 60.676 57.895 9.72 0.00 0.00 3.55
883 944 3.288964 ACTGGAATCCGAGTTCGACTAT 58.711 45.455 2.59 0.00 43.02 2.12
888 949 5.301045 TGGAATCCGAGTTCGACTATAATGT 59.699 40.000 2.59 0.00 43.02 2.71
890 951 4.825546 TCCGAGTTCGACTATAATGTCC 57.174 45.455 2.59 0.00 43.02 4.02
901 962 5.514136 CGACTATAATGTCCTCTCCCTCTCT 60.514 48.000 0.00 0.00 33.70 3.10
905 966 4.823364 AATGTCCTCTCCCTCTCTCATA 57.177 45.455 0.00 0.00 0.00 2.15
906 967 5.352700 AATGTCCTCTCCCTCTCTCATAT 57.647 43.478 0.00 0.00 0.00 1.78
907 968 6.476409 AATGTCCTCTCCCTCTCTCATATA 57.524 41.667 0.00 0.00 0.00 0.86
940 1006 4.332268 GCAGATAAAAGCAAGACCTCTCTG 59.668 45.833 0.00 0.00 0.00 3.35
979 1049 6.146347 GTCGATTGATTTAGTTCTGCCCTATC 59.854 42.308 0.00 0.00 0.00 2.08
992 1062 0.034186 CCCTATCAGCAGCCCACAAA 60.034 55.000 0.00 0.00 0.00 2.83
993 1063 1.098050 CCTATCAGCAGCCCACAAAC 58.902 55.000 0.00 0.00 0.00 2.93
994 1064 1.340405 CCTATCAGCAGCCCACAAACT 60.340 52.381 0.00 0.00 0.00 2.66
995 1065 2.092968 CCTATCAGCAGCCCACAAACTA 60.093 50.000 0.00 0.00 0.00 2.24
996 1066 2.119801 ATCAGCAGCCCACAAACTAG 57.880 50.000 0.00 0.00 0.00 2.57
999 1069 1.059913 AGCAGCCCACAAACTAGACT 58.940 50.000 0.00 0.00 0.00 3.24
1005 1075 2.919228 CCCACAAACTAGACTATGGCC 58.081 52.381 0.00 0.00 0.00 5.36
2010 3340 1.542915 CACAAGGTTTGCCAGGAGATG 59.457 52.381 0.00 0.00 37.19 2.90
2052 3397 1.282875 GCTGTTCAGGCCGTTCAAC 59.717 57.895 0.00 0.00 0.00 3.18
2338 3686 2.430921 CGCAGTTCGACCTTCGCT 60.431 61.111 0.00 0.00 40.21 4.93
2400 3748 2.940467 TGGAGGCCTGGCATGGAA 60.940 61.111 22.05 0.00 0.00 3.53
2582 3948 1.271102 ACCAGAGAGCGAGACTTGAAC 59.729 52.381 0.00 0.00 0.00 3.18
2599 4721 2.066262 GAACGAGAAATGACAAGGCGA 58.934 47.619 0.00 0.00 0.00 5.54
2624 4746 3.196685 CCCACTTGAACAAGGGAAAACAA 59.803 43.478 16.99 0.00 44.41 2.83
2625 4747 4.432712 CCACTTGAACAAGGGAAAACAAG 58.567 43.478 16.99 0.00 44.41 3.16
2626 4748 3.865164 CACTTGAACAAGGGAAAACAAGC 59.135 43.478 17.05 0.00 44.41 4.01
2628 4750 4.953579 ACTTGAACAAGGGAAAACAAGCTA 59.046 37.500 17.05 0.00 42.53 3.32
2629 4751 4.911514 TGAACAAGGGAAAACAAGCTAC 57.088 40.909 0.00 0.00 0.00 3.58
2631 4753 4.707448 TGAACAAGGGAAAACAAGCTACAA 59.293 37.500 0.00 0.00 0.00 2.41
2737 4910 5.613358 ACTGAGATCCGAACAATTGTTTC 57.387 39.130 24.02 17.01 38.56 2.78
2851 7103 3.591196 TGTAAGCCCATGTTGAAATGC 57.409 42.857 0.00 0.00 0.00 3.56
2854 7106 3.775261 AAGCCCATGTTGAAATGCTTT 57.225 38.095 0.00 0.00 35.68 3.51
2867 7120 5.624159 TGAAATGCTTTTTCTCCTCTCTCA 58.376 37.500 12.04 0.00 0.00 3.27
2868 7121 5.471456 TGAAATGCTTTTTCTCCTCTCTCAC 59.529 40.000 12.04 0.00 0.00 3.51
2869 7122 3.409026 TGCTTTTTCTCCTCTCTCACC 57.591 47.619 0.00 0.00 0.00 4.02
2870 7123 2.705658 TGCTTTTTCTCCTCTCTCACCA 59.294 45.455 0.00 0.00 0.00 4.17
2883 7136 4.074970 TCTCTCACCATTTTTGAAGGAGC 58.925 43.478 0.00 0.00 0.00 4.70
2908 7161 6.334202 TGTGTTAATTTTGGTGGTTCAGAAC 58.666 36.000 4.52 4.52 0.00 3.01
2921 7174 5.873179 GGTTCAGAACCGATATTTGAACA 57.127 39.130 16.85 0.00 45.73 3.18
2922 7175 6.249035 GGTTCAGAACCGATATTTGAACAA 57.751 37.500 16.85 0.00 45.73 2.83
2923 7176 6.674066 GGTTCAGAACCGATATTTGAACAAA 58.326 36.000 16.85 2.48 45.73 2.83
2931 7184 9.900264 GAACCGATATTTGAACAAATTTAATGC 57.100 29.630 16.12 0.00 40.99 3.56
2959 7212 2.626785 TCCATTCCTCACCACTTACCA 58.373 47.619 0.00 0.00 0.00 3.25
2962 7215 2.489938 TTCCTCACCACTTACCATGC 57.510 50.000 0.00 0.00 0.00 4.06
2963 7216 1.656587 TCCTCACCACTTACCATGCT 58.343 50.000 0.00 0.00 0.00 3.79
2964 7217 1.555075 TCCTCACCACTTACCATGCTC 59.445 52.381 0.00 0.00 0.00 4.26
2965 7218 1.407437 CCTCACCACTTACCATGCTCC 60.407 57.143 0.00 0.00 0.00 4.70
2966 7219 1.556911 CTCACCACTTACCATGCTCCT 59.443 52.381 0.00 0.00 0.00 3.69
2967 7220 1.278985 TCACCACTTACCATGCTCCTG 59.721 52.381 0.00 0.00 0.00 3.86
2968 7221 1.003580 CACCACTTACCATGCTCCTGT 59.996 52.381 0.00 0.00 0.00 4.00
2969 7222 1.279271 ACCACTTACCATGCTCCTGTC 59.721 52.381 0.00 0.00 0.00 3.51
2970 7223 1.407437 CCACTTACCATGCTCCTGTCC 60.407 57.143 0.00 0.00 0.00 4.02
2971 7224 1.556911 CACTTACCATGCTCCTGTCCT 59.443 52.381 0.00 0.00 0.00 3.85
2972 7225 2.026822 CACTTACCATGCTCCTGTCCTT 60.027 50.000 0.00 0.00 0.00 3.36
2973 7226 2.644798 ACTTACCATGCTCCTGTCCTTT 59.355 45.455 0.00 0.00 0.00 3.11
2974 7227 3.074538 ACTTACCATGCTCCTGTCCTTTT 59.925 43.478 0.00 0.00 0.00 2.27
2975 7228 2.206576 ACCATGCTCCTGTCCTTTTC 57.793 50.000 0.00 0.00 0.00 2.29
2976 7229 1.425066 ACCATGCTCCTGTCCTTTTCA 59.575 47.619 0.00 0.00 0.00 2.69
2977 7230 2.089980 CCATGCTCCTGTCCTTTTCAG 58.910 52.381 0.00 0.00 0.00 3.02
2978 7231 2.290514 CCATGCTCCTGTCCTTTTCAGA 60.291 50.000 0.00 0.00 35.20 3.27
2979 7232 2.550830 TGCTCCTGTCCTTTTCAGAC 57.449 50.000 0.00 0.00 35.20 3.51
2980 7233 1.768275 TGCTCCTGTCCTTTTCAGACA 59.232 47.619 0.00 0.00 41.84 3.41
2988 7241 4.632153 TGTCCTTTTCAGACAGAGCTAAC 58.368 43.478 0.00 0.00 39.29 2.34
3003 7256 7.548097 ACAGAGCTAACGAATTAAATCAGAGA 58.452 34.615 0.00 0.00 0.00 3.10
3005 7258 8.538856 CAGAGCTAACGAATTAAATCAGAGAAG 58.461 37.037 0.00 0.00 0.00 2.85
3078 7331 7.329717 CACGAACTCTACTTCTCAAAAGCTTAT 59.670 37.037 0.00 0.00 0.00 1.73
3103 7366 6.799512 ACTACCTATACGCGACAAGTAATTT 58.200 36.000 15.93 0.00 0.00 1.82
3105 7368 5.653507 ACCTATACGCGACAAGTAATTTCA 58.346 37.500 15.93 0.00 0.00 2.69
3106 7369 6.101332 ACCTATACGCGACAAGTAATTTCAA 58.899 36.000 15.93 0.00 0.00 2.69
3109 7372 3.537806 ACGCGACAAGTAATTTCAAACG 58.462 40.909 15.93 0.00 0.00 3.60
3112 7375 3.904234 GCGACAAGTAATTTCAAACGGAC 59.096 43.478 0.00 0.00 0.00 4.79
3114 7377 4.084952 CGACAAGTAATTTCAAACGGACGA 60.085 41.667 0.00 0.00 0.00 4.20
3190 7454 3.137533 GCATTAAGAGAGTGGCATCCTC 58.862 50.000 10.04 10.04 0.00 3.71
3252 7516 4.080299 GGAGGGAAACAAGTATGACAGGAT 60.080 45.833 0.00 0.00 0.00 3.24
3255 7519 5.104485 AGGGAAACAAGTATGACAGGATACC 60.104 44.000 0.00 0.00 30.20 2.73
3266 7530 5.367945 TGACAGGATACCTTAACCCAATC 57.632 43.478 0.00 0.00 37.17 2.67
3267 7531 4.165372 TGACAGGATACCTTAACCCAATCC 59.835 45.833 0.00 0.00 37.05 3.01
3268 7532 4.380791 ACAGGATACCTTAACCCAATCCT 58.619 43.478 0.00 0.00 45.78 3.24
3269 7533 4.412528 ACAGGATACCTTAACCCAATCCTC 59.587 45.833 0.00 0.00 43.60 3.71
3270 7534 4.660771 CAGGATACCTTAACCCAATCCTCT 59.339 45.833 0.00 0.00 43.60 3.69
3271 7535 5.844516 CAGGATACCTTAACCCAATCCTCTA 59.155 44.000 0.00 0.00 43.60 2.43
3272 7536 6.502158 CAGGATACCTTAACCCAATCCTCTAT 59.498 42.308 0.00 0.00 43.60 1.98
3273 7537 7.678598 CAGGATACCTTAACCCAATCCTCTATA 59.321 40.741 0.00 0.00 43.60 1.31
3274 7538 8.246615 AGGATACCTTAACCCAATCCTCTATAA 58.753 37.037 0.00 0.00 42.14 0.98
3275 7539 8.319881 GGATACCTTAACCCAATCCTCTATAAC 58.680 40.741 0.00 0.00 34.51 1.89
3276 7540 8.808240 ATACCTTAACCCAATCCTCTATAACA 57.192 34.615 0.00 0.00 0.00 2.41
3277 7541 6.896883 ACCTTAACCCAATCCTCTATAACAC 58.103 40.000 0.00 0.00 0.00 3.32
3278 7542 6.677076 ACCTTAACCCAATCCTCTATAACACT 59.323 38.462 0.00 0.00 0.00 3.55
3279 7543 7.847848 ACCTTAACCCAATCCTCTATAACACTA 59.152 37.037 0.00 0.00 0.00 2.74
3280 7544 8.711170 CCTTAACCCAATCCTCTATAACACTAA 58.289 37.037 0.00 0.00 0.00 2.24
3282 7546 9.895138 TTAACCCAATCCTCTATAACACTAAAC 57.105 33.333 0.00 0.00 0.00 2.01
3283 7547 7.750947 ACCCAATCCTCTATAACACTAAACT 57.249 36.000 0.00 0.00 0.00 2.66
3284 7548 7.793036 ACCCAATCCTCTATAACACTAAACTC 58.207 38.462 0.00 0.00 0.00 3.01
3285 7549 7.147532 ACCCAATCCTCTATAACACTAAACTCC 60.148 40.741 0.00 0.00 0.00 3.85
3286 7550 7.217906 CCAATCCTCTATAACACTAAACTCCC 58.782 42.308 0.00 0.00 0.00 4.30
3287 7551 7.071321 CCAATCCTCTATAACACTAAACTCCCT 59.929 40.741 0.00 0.00 0.00 4.20
3288 7552 9.144298 CAATCCTCTATAACACTAAACTCCCTA 57.856 37.037 0.00 0.00 0.00 3.53
3289 7553 9.725206 AATCCTCTATAACACTAAACTCCCTAA 57.275 33.333 0.00 0.00 0.00 2.69
3290 7554 9.900112 ATCCTCTATAACACTAAACTCCCTAAT 57.100 33.333 0.00 0.00 0.00 1.73
3291 7555 9.725206 TCCTCTATAACACTAAACTCCCTAATT 57.275 33.333 0.00 0.00 0.00 1.40
3317 7581 9.883142 TTTAAAAAGTTCACATTCAATTGAGGT 57.117 25.926 8.41 8.48 0.00 3.85
3318 7582 9.528018 TTAAAAAGTTCACATTCAATTGAGGTC 57.472 29.630 8.41 0.78 0.00 3.85
3319 7583 6.966534 AAAGTTCACATTCAATTGAGGTCT 57.033 33.333 8.41 2.91 0.00 3.85
3320 7584 6.566197 AAGTTCACATTCAATTGAGGTCTC 57.434 37.500 8.41 4.63 0.00 3.36
3321 7585 5.006386 AGTTCACATTCAATTGAGGTCTCC 58.994 41.667 8.41 2.03 0.00 3.71
3322 7586 3.955471 TCACATTCAATTGAGGTCTCCC 58.045 45.455 8.41 0.00 0.00 4.30
3323 7587 3.330405 TCACATTCAATTGAGGTCTCCCA 59.670 43.478 8.41 0.00 0.00 4.37
3324 7588 4.018141 TCACATTCAATTGAGGTCTCCCAT 60.018 41.667 8.41 0.00 0.00 4.00
3325 7589 4.708421 CACATTCAATTGAGGTCTCCCATT 59.292 41.667 8.41 0.00 0.00 3.16
3326 7590 5.887598 CACATTCAATTGAGGTCTCCCATTA 59.112 40.000 8.41 0.00 0.00 1.90
3327 7591 6.039047 CACATTCAATTGAGGTCTCCCATTAG 59.961 42.308 8.41 0.00 0.00 1.73
3328 7592 6.069440 ACATTCAATTGAGGTCTCCCATTAGA 60.069 38.462 8.41 0.00 0.00 2.10
3329 7593 6.387192 TTCAATTGAGGTCTCCCATTAGAA 57.613 37.500 8.41 0.00 0.00 2.10
3330 7594 6.581388 TCAATTGAGGTCTCCCATTAGAAT 57.419 37.500 3.38 0.00 0.00 2.40
3331 7595 6.973642 TCAATTGAGGTCTCCCATTAGAATT 58.026 36.000 3.38 0.00 0.00 2.17
3332 7596 6.830324 TCAATTGAGGTCTCCCATTAGAATTG 59.170 38.462 3.38 0.00 0.00 2.32
3333 7597 4.778213 TGAGGTCTCCCATTAGAATTGG 57.222 45.455 0.00 0.00 0.00 3.16
3334 7598 4.370776 TGAGGTCTCCCATTAGAATTGGA 58.629 43.478 0.00 0.00 0.00 3.53
3335 7599 4.977739 TGAGGTCTCCCATTAGAATTGGAT 59.022 41.667 0.00 0.00 30.69 3.41
3336 7600 6.150332 TGAGGTCTCCCATTAGAATTGGATA 58.850 40.000 0.00 0.00 30.69 2.59
3337 7601 6.619437 TGAGGTCTCCCATTAGAATTGGATAA 59.381 38.462 0.00 0.00 30.69 1.75
3338 7602 6.842676 AGGTCTCCCATTAGAATTGGATAAC 58.157 40.000 0.00 0.00 30.69 1.89
3339 7603 6.004574 GGTCTCCCATTAGAATTGGATAACC 58.995 44.000 9.50 9.50 33.12 2.85
3340 7604 6.004574 GTCTCCCATTAGAATTGGATAACCC 58.995 44.000 0.00 0.00 30.69 4.11
3341 7605 4.980573 TCCCATTAGAATTGGATAACCCG 58.019 43.478 0.00 0.00 37.93 5.28
3342 7606 4.661240 TCCCATTAGAATTGGATAACCCGA 59.339 41.667 0.00 0.00 37.93 5.14
3343 7607 5.312178 TCCCATTAGAATTGGATAACCCGAT 59.688 40.000 0.00 0.00 40.91 4.18
3345 7609 6.493458 CCCATTAGAATTGGATAACCCGATTT 59.507 38.462 0.00 0.00 46.68 2.17
3346 7610 7.015195 CCCATTAGAATTGGATAACCCGATTTT 59.985 37.037 0.00 0.00 46.68 1.82
3347 7611 7.867403 CCATTAGAATTGGATAACCCGATTTTG 59.133 37.037 0.00 0.00 46.68 2.44
3348 7612 8.629158 CATTAGAATTGGATAACCCGATTTTGA 58.371 33.333 0.00 0.00 46.68 2.69
3349 7613 6.451064 AGAATTGGATAACCCGATTTTGAC 57.549 37.500 0.00 0.00 46.68 3.18
3350 7614 6.187682 AGAATTGGATAACCCGATTTTGACT 58.812 36.000 0.00 0.00 46.68 3.41
3351 7615 7.343357 AGAATTGGATAACCCGATTTTGACTA 58.657 34.615 0.00 0.00 46.68 2.59
3352 7616 7.499232 AGAATTGGATAACCCGATTTTGACTAG 59.501 37.037 0.00 0.00 46.68 2.57
3353 7617 5.031066 TGGATAACCCGATTTTGACTAGG 57.969 43.478 0.00 0.00 37.93 3.02
3354 7618 4.472108 TGGATAACCCGATTTTGACTAGGT 59.528 41.667 0.00 0.00 37.93 3.08
3355 7619 5.055144 GGATAACCCGATTTTGACTAGGTC 58.945 45.833 0.00 0.00 0.00 3.85
3356 7620 5.395990 GGATAACCCGATTTTGACTAGGTCA 60.396 44.000 0.00 0.00 41.09 4.02
3357 7621 9.161021 TGGATAACCCGATTTTGACTAGGTCAA 62.161 40.741 8.75 8.75 43.31 3.18
3369 7633 7.873719 TTGACTAGGTCAACAATTTCTCAAA 57.126 32.000 8.75 0.00 45.88 2.69
3370 7634 7.496529 TGACTAGGTCAACAATTTCTCAAAG 57.503 36.000 0.00 0.00 39.78 2.77
3371 7635 6.017109 TGACTAGGTCAACAATTTCTCAAAGC 60.017 38.462 0.00 0.00 39.78 3.51
3372 7636 6.064717 ACTAGGTCAACAATTTCTCAAAGCT 58.935 36.000 0.00 0.00 0.00 3.74
3373 7637 7.224297 ACTAGGTCAACAATTTCTCAAAGCTA 58.776 34.615 0.00 0.00 0.00 3.32
3374 7638 7.885399 ACTAGGTCAACAATTTCTCAAAGCTAT 59.115 33.333 0.00 0.00 0.00 2.97
3375 7639 7.150783 AGGTCAACAATTTCTCAAAGCTATC 57.849 36.000 0.00 0.00 0.00 2.08
3376 7640 6.944862 AGGTCAACAATTTCTCAAAGCTATCT 59.055 34.615 0.00 0.00 0.00 1.98
3377 7641 7.120432 AGGTCAACAATTTCTCAAAGCTATCTC 59.880 37.037 0.00 0.00 0.00 2.75
3378 7642 7.094634 GGTCAACAATTTCTCAAAGCTATCTCA 60.095 37.037 0.00 0.00 0.00 3.27
3379 7643 8.457261 GTCAACAATTTCTCAAAGCTATCTCAT 58.543 33.333 0.00 0.00 0.00 2.90
3380 7644 9.017509 TCAACAATTTCTCAAAGCTATCTCATT 57.982 29.630 0.00 0.00 0.00 2.57
3381 7645 9.286946 CAACAATTTCTCAAAGCTATCTCATTC 57.713 33.333 0.00 0.00 0.00 2.67
3382 7646 8.571461 ACAATTTCTCAAAGCTATCTCATTCA 57.429 30.769 0.00 0.00 0.00 2.57
3383 7647 9.017509 ACAATTTCTCAAAGCTATCTCATTCAA 57.982 29.630 0.00 0.00 0.00 2.69
3387 7651 9.458727 TTTCTCAAAGCTATCTCATTCAATTCT 57.541 29.630 0.00 0.00 0.00 2.40
3388 7652 9.458727 TTCTCAAAGCTATCTCATTCAATTCTT 57.541 29.630 0.00 0.00 0.00 2.52
3389 7653 9.458727 TCTCAAAGCTATCTCATTCAATTCTTT 57.541 29.630 0.00 0.00 0.00 2.52
3423 7687 7.772166 ACACTATGCTTCCTAATTTTTAAGGC 58.228 34.615 0.00 0.00 32.55 4.35
3424 7688 7.147897 ACACTATGCTTCCTAATTTTTAAGGCC 60.148 37.037 0.00 0.00 32.55 5.19
3425 7689 7.068716 CACTATGCTTCCTAATTTTTAAGGCCT 59.931 37.037 0.00 0.00 32.55 5.19
3426 7690 5.914898 TGCTTCCTAATTTTTAAGGCCTC 57.085 39.130 5.23 0.00 32.55 4.70
3427 7691 5.329399 TGCTTCCTAATTTTTAAGGCCTCA 58.671 37.500 5.23 0.00 32.55 3.86
3428 7692 5.185056 TGCTTCCTAATTTTTAAGGCCTCAC 59.815 40.000 5.23 0.00 32.55 3.51
3429 7693 5.185056 GCTTCCTAATTTTTAAGGCCTCACA 59.815 40.000 5.23 0.00 32.55 3.58
3430 7694 6.295067 GCTTCCTAATTTTTAAGGCCTCACAA 60.295 38.462 5.23 0.00 32.55 3.33
3431 7695 7.579531 GCTTCCTAATTTTTAAGGCCTCACAAT 60.580 37.037 5.23 0.00 32.55 2.71
3432 7696 7.790782 TCCTAATTTTTAAGGCCTCACAATT 57.209 32.000 5.23 11.17 32.55 2.32
3433 7697 8.887264 TCCTAATTTTTAAGGCCTCACAATTA 57.113 30.769 5.23 11.70 32.55 1.40
3434 7698 9.315363 TCCTAATTTTTAAGGCCTCACAATTAA 57.685 29.630 5.23 0.00 32.55 1.40
3439 7703 9.657419 ATTTTTAAGGCCTCACAATTAATTGAG 57.343 29.630 30.18 23.36 40.14 3.02
3461 7725 9.927668 TTGAGGTCTTCAATTTAAATTTGGATC 57.072 29.630 10.77 9.40 40.82 3.36
3462 7726 9.087871 TGAGGTCTTCAATTTAAATTTGGATCA 57.912 29.630 10.77 8.12 31.34 2.92
3465 7729 9.317936 GGTCTTCAATTTAAATTTGGATCATCC 57.682 33.333 10.77 0.00 36.96 3.51
3466 7730 9.874205 GTCTTCAATTTAAATTTGGATCATCCA 57.126 29.630 10.77 0.66 46.61 3.41
3478 7742 4.676109 TGGATCATCCAATTTGACTTGGT 58.324 39.130 2.95 0.00 45.00 3.67
3479 7743 4.706476 TGGATCATCCAATTTGACTTGGTC 59.294 41.667 2.95 0.00 45.00 4.02
3480 7744 4.706476 GGATCATCCAATTTGACTTGGTCA 59.294 41.667 0.00 0.00 44.99 4.02
3481 7745 5.393461 GGATCATCCAATTTGACTTGGTCAC 60.393 44.000 0.00 0.00 44.99 3.67
3482 7746 3.826157 TCATCCAATTTGACTTGGTCACC 59.174 43.478 0.00 0.00 42.60 4.02
3483 7747 3.304911 TCCAATTTGACTTGGTCACCA 57.695 42.857 0.00 0.00 42.60 4.17
3484 7748 3.636679 TCCAATTTGACTTGGTCACCAA 58.363 40.909 9.51 9.51 42.60 3.67
3485 7749 4.026744 TCCAATTTGACTTGGTCACCAAA 58.973 39.130 11.37 0.00 43.44 3.28
3486 7750 4.653341 TCCAATTTGACTTGGTCACCAAAT 59.347 37.500 11.37 0.00 43.44 2.32
3487 7751 5.130145 TCCAATTTGACTTGGTCACCAAATT 59.870 36.000 11.37 4.11 43.44 1.82
3488 7752 5.821995 CCAATTTGACTTGGTCACCAAATTT 59.178 36.000 11.37 0.00 43.44 1.82
3489 7753 6.318396 CCAATTTGACTTGGTCACCAAATTTT 59.682 34.615 11.37 0.00 43.44 1.82
3490 7754 7.497249 CCAATTTGACTTGGTCACCAAATTTTA 59.503 33.333 11.37 0.00 43.44 1.52
3491 7755 8.550376 CAATTTGACTTGGTCACCAAATTTTAG 58.450 33.333 11.37 0.00 43.44 1.85
3492 7756 5.782893 TGACTTGGTCACCAAATTTTAGG 57.217 39.130 11.37 0.00 43.44 2.69
3493 7757 5.450453 TGACTTGGTCACCAAATTTTAGGA 58.550 37.500 11.37 0.00 43.44 2.94
3494 7758 5.534654 TGACTTGGTCACCAAATTTTAGGAG 59.465 40.000 11.37 0.00 43.44 3.69
3495 7759 4.280929 ACTTGGTCACCAAATTTTAGGAGC 59.719 41.667 11.37 3.87 43.44 4.70
3496 7760 4.112634 TGGTCACCAAATTTTAGGAGCT 57.887 40.909 0.00 0.00 0.00 4.09
3497 7761 4.079253 TGGTCACCAAATTTTAGGAGCTC 58.921 43.478 4.71 4.71 0.00 4.09
3498 7762 4.202567 TGGTCACCAAATTTTAGGAGCTCT 60.203 41.667 14.64 2.18 0.00 4.09
3499 7763 4.396478 GGTCACCAAATTTTAGGAGCTCTC 59.604 45.833 14.64 3.76 0.00 3.20
3515 7779 7.200778 GGAGCTCTCCTATTCAATTCAATTC 57.799 40.000 14.64 0.00 46.16 2.17
3516 7780 6.769822 GGAGCTCTCCTATTCAATTCAATTCA 59.230 38.462 14.64 0.00 46.16 2.57
3517 7781 7.255070 GGAGCTCTCCTATTCAATTCAATTCAC 60.255 40.741 14.64 0.00 46.16 3.18
3518 7782 7.344913 AGCTCTCCTATTCAATTCAATTCACT 58.655 34.615 0.00 0.00 0.00 3.41
3519 7783 8.489489 AGCTCTCCTATTCAATTCAATTCACTA 58.511 33.333 0.00 0.00 0.00 2.74
3520 7784 9.282569 GCTCTCCTATTCAATTCAATTCACTAT 57.717 33.333 0.00 0.00 0.00 2.12
3525 7789 9.956720 CCTATTCAATTCAATTCACTATGTTCC 57.043 33.333 0.00 0.00 0.00 3.62
3556 7820 8.647143 TTTTGAACTCTTTCATTCAATTGACC 57.353 30.769 7.89 0.00 42.72 4.02
3557 7821 7.587037 TTGAACTCTTTCATTCAATTGACCT 57.413 32.000 7.89 0.00 41.50 3.85
3558 7822 8.690203 TTGAACTCTTTCATTCAATTGACCTA 57.310 30.769 7.89 0.00 41.50 3.08
3559 7823 8.099364 TGAACTCTTTCATTCAATTGACCTAC 57.901 34.615 7.89 0.00 36.79 3.18
3560 7824 7.939039 TGAACTCTTTCATTCAATTGACCTACT 59.061 33.333 7.89 0.00 36.79 2.57
3561 7825 7.913674 ACTCTTTCATTCAATTGACCTACTC 57.086 36.000 7.89 0.00 0.00 2.59
3562 7826 7.453393 ACTCTTTCATTCAATTGACCTACTCA 58.547 34.615 7.89 0.00 0.00 3.41
3563 7827 7.939039 ACTCTTTCATTCAATTGACCTACTCAA 59.061 33.333 7.89 0.00 43.28 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.987547 GTGGACACGGGGTCTCGA 60.988 66.667 10.69 0.00 46.16 4.04
176 202 0.533755 GCAGCTCATAGCCGTCCATT 60.534 55.000 0.00 0.00 43.77 3.16
187 213 2.362120 GGCCCAACAGCAGCTCAT 60.362 61.111 0.00 0.00 0.00 2.90
224 259 5.072741 GGTACGGAATATGTAGGTAGGTGA 58.927 45.833 0.00 0.00 0.00 4.02
235 270 6.522054 ACAAATGGTCTAGGTACGGAATATG 58.478 40.000 0.00 0.00 0.00 1.78
308 353 2.672098 TGATCTTCTAGAGGAGTGGGC 58.328 52.381 10.61 0.00 0.00 5.36
384 435 4.260170 GTCTTGATGATCCTATGATGGGC 58.740 47.826 0.00 0.00 0.00 5.36
456 507 6.324770 AGGGTTCACAAAGATTCAAGAACAAT 59.675 34.615 0.00 0.00 37.64 2.71
503 554 7.281549 TCAATTGACTAGATCCAATCACACATG 59.718 37.037 3.38 0.00 32.36 3.21
546 606 6.319911 GGAATCCCCAAGAACAAGAAGAATAG 59.680 42.308 0.00 0.00 34.14 1.73
548 608 5.019470 GGAATCCCCAAGAACAAGAAGAAT 58.981 41.667 0.00 0.00 34.14 2.40
618 678 7.066766 GGAGATCTTCATATACCCATGATTTGC 59.933 40.741 0.00 0.00 34.95 3.68
621 681 7.460402 AGTGGAGATCTTCATATACCCATGATT 59.540 37.037 7.06 0.00 34.95 2.57
622 682 6.964679 AGTGGAGATCTTCATATACCCATGAT 59.035 38.462 7.06 0.00 34.95 2.45
623 683 6.326161 AGTGGAGATCTTCATATACCCATGA 58.674 40.000 7.06 0.00 33.10 3.07
624 684 6.617782 AGTGGAGATCTTCATATACCCATG 57.382 41.667 7.06 0.00 0.00 3.66
625 685 8.766476 CATAAGTGGAGATCTTCATATACCCAT 58.234 37.037 7.06 0.00 0.00 4.00
626 686 7.734865 ACATAAGTGGAGATCTTCATATACCCA 59.265 37.037 7.06 0.00 0.00 4.51
627 687 8.140112 ACATAAGTGGAGATCTTCATATACCC 57.860 38.462 7.06 0.00 0.00 3.69
628 688 7.971168 CGACATAAGTGGAGATCTTCATATACC 59.029 40.741 7.06 0.00 0.00 2.73
629 689 7.971168 CCGACATAAGTGGAGATCTTCATATAC 59.029 40.741 7.06 0.00 0.00 1.47
630 690 7.122799 CCCGACATAAGTGGAGATCTTCATATA 59.877 40.741 7.06 4.17 0.00 0.86
631 691 6.071108 CCCGACATAAGTGGAGATCTTCATAT 60.071 42.308 7.06 0.00 0.00 1.78
632 692 5.243954 CCCGACATAAGTGGAGATCTTCATA 59.756 44.000 7.06 0.00 0.00 2.15
633 693 4.039730 CCCGACATAAGTGGAGATCTTCAT 59.960 45.833 7.06 0.00 0.00 2.57
634 694 3.384789 CCCGACATAAGTGGAGATCTTCA 59.615 47.826 0.00 0.00 0.00 3.02
635 695 3.800604 GCCCGACATAAGTGGAGATCTTC 60.801 52.174 0.00 0.00 0.00 2.87
636 696 2.103263 GCCCGACATAAGTGGAGATCTT 59.897 50.000 0.00 0.00 0.00 2.40
637 697 1.689273 GCCCGACATAAGTGGAGATCT 59.311 52.381 0.00 0.00 0.00 2.75
638 698 1.603172 CGCCCGACATAAGTGGAGATC 60.603 57.143 0.00 0.00 0.00 2.75
639 699 0.389391 CGCCCGACATAAGTGGAGAT 59.611 55.000 0.00 0.00 0.00 2.75
640 700 1.813859 CGCCCGACATAAGTGGAGA 59.186 57.895 0.00 0.00 0.00 3.71
641 701 1.883084 GCGCCCGACATAAGTGGAG 60.883 63.158 0.00 0.00 0.00 3.86
642 702 2.185867 GCGCCCGACATAAGTGGA 59.814 61.111 0.00 0.00 0.00 4.02
643 703 2.895372 GGCGCCCGACATAAGTGG 60.895 66.667 18.11 0.00 0.00 4.00
644 704 2.125310 TGGCGCCCGACATAAGTG 60.125 61.111 26.77 0.00 0.00 3.16
645 705 2.125269 GTGGCGCCCGACATAAGT 60.125 61.111 26.77 0.00 34.62 2.24
646 706 2.125310 TGTGGCGCCCGACATAAG 60.125 61.111 26.77 0.00 34.62 1.73
647 707 2.435234 GTGTGGCGCCCGACATAA 60.435 61.111 26.77 0.00 34.62 1.90
648 708 2.733319 TTTGTGTGGCGCCCGACATA 62.733 55.000 26.77 18.14 34.62 2.29
649 709 4.634703 TTGTGTGGCGCCCGACAT 62.635 61.111 26.77 0.00 34.62 3.06
650 710 4.858680 TTTGTGTGGCGCCCGACA 62.859 61.111 26.77 23.15 0.00 4.35
651 711 3.127352 TTTTTGTGTGGCGCCCGAC 62.127 57.895 26.77 20.63 0.00 4.79
652 712 2.829003 TTTTTGTGTGGCGCCCGA 60.829 55.556 26.77 7.30 0.00 5.14
666 726 5.508200 TTATTTCACGTGGCTGACTTTTT 57.492 34.783 17.00 0.00 0.00 1.94
667 727 5.705609 ATTATTTCACGTGGCTGACTTTT 57.294 34.783 17.00 0.00 0.00 2.27
668 728 5.705609 AATTATTTCACGTGGCTGACTTT 57.294 34.783 17.00 0.00 0.00 2.66
669 729 5.705609 AAATTATTTCACGTGGCTGACTT 57.294 34.783 17.00 0.70 0.00 3.01
670 730 6.608610 GTTAAATTATTTCACGTGGCTGACT 58.391 36.000 17.00 0.00 0.00 3.41
671 731 5.506832 CGTTAAATTATTTCACGTGGCTGAC 59.493 40.000 17.00 0.96 36.00 3.51
672 732 5.391097 CCGTTAAATTATTTCACGTGGCTGA 60.391 40.000 17.00 0.00 38.27 4.26
673 733 4.791163 CCGTTAAATTATTTCACGTGGCTG 59.209 41.667 17.00 4.24 38.27 4.85
674 734 4.673320 GCCGTTAAATTATTTCACGTGGCT 60.673 41.667 17.00 3.17 38.27 4.75
675 735 3.544682 GCCGTTAAATTATTTCACGTGGC 59.455 43.478 17.00 13.66 38.27 5.01
676 736 4.099824 GGCCGTTAAATTATTTCACGTGG 58.900 43.478 17.00 9.02 38.27 4.94
677 737 4.724303 TGGCCGTTAAATTATTTCACGTG 58.276 39.130 18.77 9.94 38.27 4.49
678 738 4.456566 ACTGGCCGTTAAATTATTTCACGT 59.543 37.500 18.77 2.35 38.27 4.49
679 739 4.976987 ACTGGCCGTTAAATTATTTCACG 58.023 39.130 14.99 14.99 39.30 4.35
680 740 6.383415 TGAACTGGCCGTTAAATTATTTCAC 58.617 36.000 12.01 0.00 35.56 3.18
681 741 6.576662 TGAACTGGCCGTTAAATTATTTCA 57.423 33.333 12.01 0.00 35.56 2.69
682 742 7.973944 AGAATGAACTGGCCGTTAAATTATTTC 59.026 33.333 12.01 6.51 35.56 2.17
683 743 7.836842 AGAATGAACTGGCCGTTAAATTATTT 58.163 30.769 12.01 0.00 35.56 1.40
684 744 7.404671 AGAATGAACTGGCCGTTAAATTATT 57.595 32.000 12.01 8.56 35.56 1.40
685 745 8.567948 CATAGAATGAACTGGCCGTTAAATTAT 58.432 33.333 12.01 13.30 35.56 1.28
686 746 7.771361 TCATAGAATGAACTGGCCGTTAAATTA 59.229 33.333 12.01 4.20 36.11 1.40
687 747 6.601613 TCATAGAATGAACTGGCCGTTAAATT 59.398 34.615 12.01 13.65 36.11 1.82
688 748 6.119536 TCATAGAATGAACTGGCCGTTAAAT 58.880 36.000 12.01 7.37 36.11 1.40
689 749 5.492895 TCATAGAATGAACTGGCCGTTAAA 58.507 37.500 12.01 5.64 36.11 1.52
690 750 5.092554 TCATAGAATGAACTGGCCGTTAA 57.907 39.130 12.01 6.48 36.11 2.01
691 751 4.746535 TCATAGAATGAACTGGCCGTTA 57.253 40.909 12.01 3.54 36.11 3.18
692 752 3.627395 TCATAGAATGAACTGGCCGTT 57.373 42.857 11.90 11.90 36.11 4.44
693 753 3.845781 ATCATAGAATGAACTGGCCGT 57.154 42.857 0.00 0.00 43.50 5.68
694 754 4.576053 TCAAATCATAGAATGAACTGGCCG 59.424 41.667 0.00 0.00 43.50 6.13
695 755 6.645790 ATCAAATCATAGAATGAACTGGCC 57.354 37.500 0.00 0.00 43.50 5.36
696 756 8.192774 TGAAATCAAATCATAGAATGAACTGGC 58.807 33.333 0.00 0.00 43.50 4.85
701 761 9.955208 CGGAATGAAATCAAATCATAGAATGAA 57.045 29.630 0.00 0.00 43.50 2.57
702 762 9.341078 TCGGAATGAAATCAAATCATAGAATGA 57.659 29.630 0.00 0.00 44.55 2.57
703 763 9.608617 CTCGGAATGAAATCAAATCATAGAATG 57.391 33.333 0.00 0.00 36.53 2.67
704 764 8.790718 CCTCGGAATGAAATCAAATCATAGAAT 58.209 33.333 0.00 0.00 36.53 2.40
705 765 7.775093 ACCTCGGAATGAAATCAAATCATAGAA 59.225 33.333 0.00 0.00 36.53 2.10
706 766 7.282585 ACCTCGGAATGAAATCAAATCATAGA 58.717 34.615 0.00 0.00 36.53 1.98
707 767 7.227314 TGACCTCGGAATGAAATCAAATCATAG 59.773 37.037 0.00 0.00 36.53 2.23
708 768 7.053498 TGACCTCGGAATGAAATCAAATCATA 58.947 34.615 0.00 0.00 36.53 2.15
709 769 5.887598 TGACCTCGGAATGAAATCAAATCAT 59.112 36.000 0.00 0.00 39.15 2.45
710 770 5.252547 TGACCTCGGAATGAAATCAAATCA 58.747 37.500 0.00 0.00 0.00 2.57
711 771 5.818136 TGACCTCGGAATGAAATCAAATC 57.182 39.130 0.00 0.00 0.00 2.17
712 772 6.588719 TTTGACCTCGGAATGAAATCAAAT 57.411 33.333 0.00 0.00 36.40 2.32
713 773 6.398234 TTTTGACCTCGGAATGAAATCAAA 57.602 33.333 0.00 0.00 38.10 2.69
714 774 6.588719 ATTTTGACCTCGGAATGAAATCAA 57.411 33.333 0.00 0.00 31.82 2.57
715 775 6.015519 ACAATTTTGACCTCGGAATGAAATCA 60.016 34.615 0.00 0.00 0.00 2.57
716 776 6.389906 ACAATTTTGACCTCGGAATGAAATC 58.610 36.000 0.00 0.00 0.00 2.17
717 777 6.015519 TGACAATTTTGACCTCGGAATGAAAT 60.016 34.615 0.00 0.00 0.00 2.17
718 778 5.300539 TGACAATTTTGACCTCGGAATGAAA 59.699 36.000 0.00 0.00 0.00 2.69
719 779 4.824537 TGACAATTTTGACCTCGGAATGAA 59.175 37.500 0.00 0.00 0.00 2.57
720 780 4.393834 TGACAATTTTGACCTCGGAATGA 58.606 39.130 0.00 0.00 0.00 2.57
721 781 4.764679 TGACAATTTTGACCTCGGAATG 57.235 40.909 0.00 0.00 0.00 2.67
722 782 5.782893 TTTGACAATTTTGACCTCGGAAT 57.217 34.783 0.00 0.00 0.00 3.01
723 783 5.782893 ATTTGACAATTTTGACCTCGGAA 57.217 34.783 0.00 0.00 0.00 4.30
724 784 5.782893 AATTTGACAATTTTGACCTCGGA 57.217 34.783 0.00 0.00 0.00 4.55
725 785 5.333263 GCAAATTTGACAATTTTGACCTCGG 60.333 40.000 27.56 9.61 40.09 4.63
726 786 5.233902 TGCAAATTTGACAATTTTGACCTCG 59.766 36.000 27.56 10.13 40.09 4.63
727 787 6.601741 TGCAAATTTGACAATTTTGACCTC 57.398 33.333 27.56 16.07 40.09 3.85
728 788 6.513720 GCATGCAAATTTGACAATTTTGACCT 60.514 34.615 27.56 15.05 40.09 3.85
729 789 5.626132 GCATGCAAATTTGACAATTTTGACC 59.374 36.000 27.56 16.80 40.09 4.02
730 790 6.432107 AGCATGCAAATTTGACAATTTTGAC 58.568 32.000 27.56 20.97 40.09 3.18
731 791 6.621316 AGCATGCAAATTTGACAATTTTGA 57.379 29.167 27.56 17.66 40.09 2.69
732 792 7.356881 CGAAAGCATGCAAATTTGACAATTTTG 60.357 33.333 22.31 22.48 40.09 2.44
733 793 6.633634 CGAAAGCATGCAAATTTGACAATTTT 59.366 30.769 22.31 17.07 40.09 1.82
734 794 6.137415 CGAAAGCATGCAAATTTGACAATTT 58.863 32.000 22.31 17.67 42.37 1.82
735 795 5.236911 ACGAAAGCATGCAAATTTGACAATT 59.763 32.000 22.31 11.85 33.72 2.32
736 796 4.751098 ACGAAAGCATGCAAATTTGACAAT 59.249 33.333 22.31 8.74 0.00 2.71
737 797 4.118410 ACGAAAGCATGCAAATTTGACAA 58.882 34.783 22.31 6.73 0.00 3.18
738 798 3.715495 ACGAAAGCATGCAAATTTGACA 58.285 36.364 22.31 17.91 0.00 3.58
739 799 4.713854 AACGAAAGCATGCAAATTTGAC 57.286 36.364 22.31 13.06 0.00 3.18
740 800 4.807834 TGAAACGAAAGCATGCAAATTTGA 59.192 33.333 22.31 7.50 0.00 2.69
741 801 5.080642 TGAAACGAAAGCATGCAAATTTG 57.919 34.783 21.98 14.03 0.00 2.32
742 802 5.927954 ATGAAACGAAAGCATGCAAATTT 57.072 30.435 21.98 11.91 0.00 1.82
743 803 5.927954 AATGAAACGAAAGCATGCAAATT 57.072 30.435 21.98 11.77 0.00 1.82
744 804 5.697633 AGAAATGAAACGAAAGCATGCAAAT 59.302 32.000 21.98 4.87 0.00 2.32
745 805 5.049167 AGAAATGAAACGAAAGCATGCAAA 58.951 33.333 21.98 0.00 0.00 3.68
746 806 4.619973 AGAAATGAAACGAAAGCATGCAA 58.380 34.783 21.98 0.00 0.00 4.08
747 807 4.241590 AGAAATGAAACGAAAGCATGCA 57.758 36.364 21.98 0.00 0.00 3.96
748 808 4.558860 GGTAGAAATGAAACGAAAGCATGC 59.441 41.667 10.51 10.51 0.00 4.06
749 809 5.698832 TGGTAGAAATGAAACGAAAGCATG 58.301 37.500 0.00 0.00 0.00 4.06
750 810 5.957842 TGGTAGAAATGAAACGAAAGCAT 57.042 34.783 0.00 0.00 0.00 3.79
751 811 5.759506 TTGGTAGAAATGAAACGAAAGCA 57.240 34.783 0.00 0.00 0.00 3.91
752 812 6.861055 TCATTTGGTAGAAATGAAACGAAAGC 59.139 34.615 7.25 0.00 41.92 3.51
791 851 3.483235 AAACAGCTGTTTGCCGCCG 62.483 57.895 37.28 1.14 45.55 6.46
883 944 4.823364 ATGAGAGAGGGAGAGGACATTA 57.177 45.455 0.00 0.00 0.00 1.90
888 949 6.951198 GTGATTTATATGAGAGAGGGAGAGGA 59.049 42.308 0.00 0.00 0.00 3.71
890 951 6.723515 TGGTGATTTATATGAGAGAGGGAGAG 59.276 42.308 0.00 0.00 0.00 3.20
901 962 8.669946 TTTTATCTGCGTGGTGATTTATATGA 57.330 30.769 0.00 0.00 0.00 2.15
905 966 5.356751 TGCTTTTATCTGCGTGGTGATTTAT 59.643 36.000 0.00 0.00 0.00 1.40
906 967 4.697828 TGCTTTTATCTGCGTGGTGATTTA 59.302 37.500 0.00 0.00 0.00 1.40
907 968 3.505680 TGCTTTTATCTGCGTGGTGATTT 59.494 39.130 0.00 0.00 0.00 2.17
940 1006 3.367932 TCAATCGACTTGAACGAAGATGC 59.632 43.478 7.53 0.00 40.92 3.91
979 1049 1.160137 GTCTAGTTTGTGGGCTGCTG 58.840 55.000 0.00 0.00 0.00 4.41
1005 1075 0.807667 CAACCAGGAAGATCGGCGAG 60.808 60.000 17.22 0.78 0.00 5.03
1170 2499 2.167161 CTCTCGCTGAGTCGTGAGT 58.833 57.895 18.46 0.00 42.02 3.41
1279 2608 4.143333 CCCGACGACGAGGGCATT 62.143 66.667 17.32 0.00 41.34 3.56
1762 3092 1.423395 CACTTCCACTGCGAGAAGAC 58.577 55.000 6.75 0.00 41.69 3.01
2052 3397 2.413453 GCTCTTGTACGCCTTGAAGAAG 59.587 50.000 0.00 0.00 0.00 2.85
2257 3602 0.247736 CCCACGAAGAAGGAGGACAG 59.752 60.000 0.00 0.00 0.00 3.51
2338 3686 0.103390 TTGAACTCCTGCGTCGTCAA 59.897 50.000 0.00 0.00 0.00 3.18
2582 3948 0.366871 CGTCGCCTTGTCATTTCTCG 59.633 55.000 0.00 0.00 0.00 4.04
2599 4721 1.528309 CCCTTGTTCAAGTGGGCGT 60.528 57.895 10.93 0.00 32.49 5.68
2624 4746 7.661437 TGTATTCATCAACAAGAGTTTGTAGCT 59.339 33.333 0.00 0.00 46.54 3.32
2625 4747 7.806690 TGTATTCATCAACAAGAGTTTGTAGC 58.193 34.615 0.00 0.00 46.54 3.58
2628 4750 9.283768 TGTATGTATTCATCAACAAGAGTTTGT 57.716 29.630 0.00 0.00 40.80 2.83
2631 4753 9.507329 AGTTGTATGTATTCATCAACAAGAGTT 57.493 29.630 19.49 0.00 40.35 3.01
2699 4872 4.124970 TCTCAGTTACATCATGCAGCATC 58.875 43.478 4.38 0.00 0.00 3.91
2737 4910 5.536554 AGAGAATTGCATTACACGTTGAG 57.463 39.130 0.00 0.00 0.00 3.02
2811 7062 8.690840 GCTTACATCACATGACTTTTTAACAAC 58.309 33.333 0.00 0.00 0.00 3.32
2822 7073 3.282021 ACATGGGCTTACATCACATGAC 58.718 45.455 11.63 0.00 40.92 3.06
2851 7103 6.890979 AAAATGGTGAGAGAGGAGAAAAAG 57.109 37.500 0.00 0.00 0.00 2.27
2854 7106 5.940617 TCAAAAATGGTGAGAGAGGAGAAA 58.059 37.500 0.00 0.00 0.00 2.52
2867 7120 3.299503 ACACAGCTCCTTCAAAAATGGT 58.700 40.909 0.00 0.00 0.00 3.55
2868 7121 4.326504 AACACAGCTCCTTCAAAAATGG 57.673 40.909 0.00 0.00 0.00 3.16
2869 7122 7.951530 AATTAACACAGCTCCTTCAAAAATG 57.048 32.000 0.00 0.00 0.00 2.32
2870 7123 8.829612 CAAAATTAACACAGCTCCTTCAAAAAT 58.170 29.630 0.00 0.00 0.00 1.82
2883 7136 6.142818 TCTGAACCACCAAAATTAACACAG 57.857 37.500 0.00 0.00 0.00 3.66
2908 7161 8.334016 TCGCATTAAATTTGTTCAAATATCGG 57.666 30.769 10.54 3.14 0.00 4.18
2913 7166 8.031848 AGCATTCGCATTAAATTTGTTCAAAT 57.968 26.923 0.00 5.12 42.27 2.32
2959 7212 2.373169 TGTCTGAAAAGGACAGGAGCAT 59.627 45.455 0.00 0.00 38.57 3.79
2966 7219 4.632153 GTTAGCTCTGTCTGAAAAGGACA 58.368 43.478 0.00 0.00 40.78 4.02
2967 7220 3.675698 CGTTAGCTCTGTCTGAAAAGGAC 59.324 47.826 0.00 0.00 0.00 3.85
2968 7221 3.572682 TCGTTAGCTCTGTCTGAAAAGGA 59.427 43.478 0.00 0.00 0.00 3.36
2969 7222 3.914312 TCGTTAGCTCTGTCTGAAAAGG 58.086 45.455 0.00 0.00 0.00 3.11
2970 7223 6.473397 AATTCGTTAGCTCTGTCTGAAAAG 57.527 37.500 0.00 0.00 0.00 2.27
2971 7224 7.956420 TTAATTCGTTAGCTCTGTCTGAAAA 57.044 32.000 0.00 0.00 0.00 2.29
2972 7225 7.956420 TTTAATTCGTTAGCTCTGTCTGAAA 57.044 32.000 0.00 0.00 0.00 2.69
2973 7226 7.817478 TGATTTAATTCGTTAGCTCTGTCTGAA 59.183 33.333 0.00 0.00 0.00 3.02
2974 7227 7.320399 TGATTTAATTCGTTAGCTCTGTCTGA 58.680 34.615 0.00 0.00 0.00 3.27
2975 7228 7.489435 TCTGATTTAATTCGTTAGCTCTGTCTG 59.511 37.037 0.00 0.00 0.00 3.51
2976 7229 7.548097 TCTGATTTAATTCGTTAGCTCTGTCT 58.452 34.615 0.00 0.00 0.00 3.41
2977 7230 7.702772 TCTCTGATTTAATTCGTTAGCTCTGTC 59.297 37.037 0.00 0.00 0.00 3.51
2978 7231 7.548097 TCTCTGATTTAATTCGTTAGCTCTGT 58.452 34.615 0.00 0.00 0.00 3.41
2979 7232 7.993821 TCTCTGATTTAATTCGTTAGCTCTG 57.006 36.000 0.00 0.00 0.00 3.35
2980 7233 8.470805 TCTTCTCTGATTTAATTCGTTAGCTCT 58.529 33.333 0.00 0.00 0.00 4.09
2981 7234 8.635877 TCTTCTCTGATTTAATTCGTTAGCTC 57.364 34.615 0.00 0.00 0.00 4.09
2982 7235 9.436957 TTTCTTCTCTGATTTAATTCGTTAGCT 57.563 29.630 0.00 0.00 0.00 3.32
3034 7287 3.559655 TCGTGAATTGGTGAAAGTCAGTG 59.440 43.478 0.00 0.00 43.12 3.66
3036 7289 4.273480 AGTTCGTGAATTGGTGAAAGTCAG 59.727 41.667 0.00 0.00 43.12 3.51
3078 7331 7.496529 AATTACTTGTCGCGTATAGGTAGTA 57.503 36.000 5.77 3.24 0.00 1.82
3103 7366 4.370049 TGACAATTACTTCGTCCGTTTGA 58.630 39.130 0.00 0.00 0.00 2.69
3105 7368 5.050567 GTCTTGACAATTACTTCGTCCGTTT 60.051 40.000 0.00 0.00 0.00 3.60
3106 7369 4.446719 GTCTTGACAATTACTTCGTCCGTT 59.553 41.667 0.00 0.00 0.00 4.44
3109 7372 6.202188 TGAAAGTCTTGACAATTACTTCGTCC 59.798 38.462 13.52 7.09 31.15 4.79
3159 7422 5.295540 CCACTCTCTTAATGCCTTTTAGAGC 59.704 44.000 7.34 0.00 33.83 4.09
3190 7454 6.206634 TCATTGTTGCTAGTAAGGTTTTGAGG 59.793 38.462 0.00 0.00 0.00 3.86
3252 7516 7.847848 AGTGTTATAGAGGATTGGGTTAAGGTA 59.152 37.037 0.00 0.00 0.00 3.08
3291 7555 9.883142 ACCTCAATTGAATGTGAACTTTTTAAA 57.117 25.926 9.88 0.00 0.00 1.52
3292 7556 9.528018 GACCTCAATTGAATGTGAACTTTTTAA 57.472 29.630 9.88 0.00 0.00 1.52
3293 7557 8.912988 AGACCTCAATTGAATGTGAACTTTTTA 58.087 29.630 9.88 0.00 0.00 1.52
3294 7558 7.785033 AGACCTCAATTGAATGTGAACTTTTT 58.215 30.769 9.88 0.00 0.00 1.94
3295 7559 7.352079 AGACCTCAATTGAATGTGAACTTTT 57.648 32.000 9.88 0.00 0.00 2.27
3296 7560 6.015940 GGAGACCTCAATTGAATGTGAACTTT 60.016 38.462 9.88 0.00 0.00 2.66
3297 7561 5.474876 GGAGACCTCAATTGAATGTGAACTT 59.525 40.000 9.88 0.00 0.00 2.66
3298 7562 5.006386 GGAGACCTCAATTGAATGTGAACT 58.994 41.667 9.88 3.85 0.00 3.01
3299 7563 5.302357 GGAGACCTCAATTGAATGTGAAC 57.698 43.478 9.88 4.02 0.00 3.18
3314 7578 9.071921 GGGTTATCCAATTCTAATGGGAGACCT 62.072 44.444 21.98 5.35 41.73 3.85
3315 7579 6.972449 GGGTTATCCAATTCTAATGGGAGACC 60.972 46.154 18.08 18.08 41.73 3.85
3316 7580 6.004574 GGGTTATCCAATTCTAATGGGAGAC 58.995 44.000 5.11 6.08 41.73 3.36
3317 7581 5.221843 CGGGTTATCCAATTCTAATGGGAGA 60.222 44.000 5.11 0.00 41.73 3.71
3318 7582 5.003804 CGGGTTATCCAATTCTAATGGGAG 58.996 45.833 5.11 0.00 41.73 4.30
3319 7583 4.661240 TCGGGTTATCCAATTCTAATGGGA 59.339 41.667 1.23 1.23 42.60 4.37
3320 7584 4.980573 TCGGGTTATCCAATTCTAATGGG 58.019 43.478 0.00 0.00 38.54 4.00
3321 7585 7.524717 AAATCGGGTTATCCAATTCTAATGG 57.475 36.000 0.00 0.00 39.41 3.16
3322 7586 8.629158 TCAAAATCGGGTTATCCAATTCTAATG 58.371 33.333 0.00 0.00 34.36 1.90
3323 7587 8.630037 GTCAAAATCGGGTTATCCAATTCTAAT 58.370 33.333 0.00 0.00 34.36 1.73
3324 7588 7.832187 AGTCAAAATCGGGTTATCCAATTCTAA 59.168 33.333 0.00 0.00 34.36 2.10
3325 7589 7.343357 AGTCAAAATCGGGTTATCCAATTCTA 58.657 34.615 0.00 0.00 34.36 2.10
3326 7590 6.187682 AGTCAAAATCGGGTTATCCAATTCT 58.812 36.000 0.00 0.00 34.36 2.40
3327 7591 6.451064 AGTCAAAATCGGGTTATCCAATTC 57.549 37.500 0.00 0.00 34.36 2.17
3328 7592 6.546034 CCTAGTCAAAATCGGGTTATCCAATT 59.454 38.462 0.00 0.00 34.36 2.32
3329 7593 6.062095 CCTAGTCAAAATCGGGTTATCCAAT 58.938 40.000 0.00 0.00 34.36 3.16
3330 7594 5.045432 ACCTAGTCAAAATCGGGTTATCCAA 60.045 40.000 0.00 0.00 34.36 3.53
3331 7595 4.472108 ACCTAGTCAAAATCGGGTTATCCA 59.528 41.667 0.00 0.00 34.36 3.41
3332 7596 5.032327 ACCTAGTCAAAATCGGGTTATCC 57.968 43.478 0.00 0.00 0.00 2.59
3333 7597 5.667466 TGACCTAGTCAAAATCGGGTTATC 58.333 41.667 0.00 0.00 39.78 1.75
3334 7598 5.687166 TGACCTAGTCAAAATCGGGTTAT 57.313 39.130 0.00 0.00 39.78 1.89
3346 7610 6.017109 GCTTTGAGAAATTGTTGACCTAGTCA 60.017 38.462 0.00 0.00 41.09 3.41
3347 7611 6.205658 AGCTTTGAGAAATTGTTGACCTAGTC 59.794 38.462 0.00 0.00 0.00 2.59
3348 7612 6.064717 AGCTTTGAGAAATTGTTGACCTAGT 58.935 36.000 0.00 0.00 0.00 2.57
3349 7613 6.566197 AGCTTTGAGAAATTGTTGACCTAG 57.434 37.500 0.00 0.00 0.00 3.02
3350 7614 8.103305 AGATAGCTTTGAGAAATTGTTGACCTA 58.897 33.333 0.00 0.00 0.00 3.08
3351 7615 6.944862 AGATAGCTTTGAGAAATTGTTGACCT 59.055 34.615 0.00 0.00 0.00 3.85
3352 7616 7.094634 TGAGATAGCTTTGAGAAATTGTTGACC 60.095 37.037 0.00 0.00 0.00 4.02
3353 7617 7.810658 TGAGATAGCTTTGAGAAATTGTTGAC 58.189 34.615 0.00 0.00 0.00 3.18
3354 7618 7.984422 TGAGATAGCTTTGAGAAATTGTTGA 57.016 32.000 0.00 0.00 0.00 3.18
3355 7619 9.286946 GAATGAGATAGCTTTGAGAAATTGTTG 57.713 33.333 0.00 0.00 0.00 3.33
3356 7620 9.017509 TGAATGAGATAGCTTTGAGAAATTGTT 57.982 29.630 0.00 0.00 0.00 2.83
3357 7621 8.571461 TGAATGAGATAGCTTTGAGAAATTGT 57.429 30.769 0.00 0.00 0.00 2.71
3361 7625 9.458727 AGAATTGAATGAGATAGCTTTGAGAAA 57.541 29.630 0.00 0.00 0.00 2.52
3362 7626 9.458727 AAGAATTGAATGAGATAGCTTTGAGAA 57.541 29.630 0.00 0.00 0.00 2.87
3363 7627 9.458727 AAAGAATTGAATGAGATAGCTTTGAGA 57.541 29.630 0.00 0.00 0.00 3.27
3397 7661 8.899771 GCCTTAAAAATTAGGAAGCATAGTGTA 58.100 33.333 0.00 0.00 33.13 2.90
3398 7662 7.147897 GGCCTTAAAAATTAGGAAGCATAGTGT 60.148 37.037 0.00 0.00 33.13 3.55
3399 7663 7.068716 AGGCCTTAAAAATTAGGAAGCATAGTG 59.931 37.037 0.00 0.00 33.13 2.74
3400 7664 7.126061 AGGCCTTAAAAATTAGGAAGCATAGT 58.874 34.615 0.00 0.00 33.13 2.12
3401 7665 7.285401 TGAGGCCTTAAAAATTAGGAAGCATAG 59.715 37.037 6.77 0.00 33.13 2.23
3402 7666 7.068226 GTGAGGCCTTAAAAATTAGGAAGCATA 59.932 37.037 6.77 0.00 33.13 3.14
3403 7667 5.957774 TGAGGCCTTAAAAATTAGGAAGCAT 59.042 36.000 6.77 0.00 33.13 3.79
3404 7668 5.185056 GTGAGGCCTTAAAAATTAGGAAGCA 59.815 40.000 6.77 0.00 33.13 3.91
3405 7669 5.185056 TGTGAGGCCTTAAAAATTAGGAAGC 59.815 40.000 6.77 0.00 33.13 3.86
3406 7670 6.834168 TGTGAGGCCTTAAAAATTAGGAAG 57.166 37.500 6.77 0.00 33.13 3.46
3407 7671 7.790782 ATTGTGAGGCCTTAAAAATTAGGAA 57.209 32.000 6.77 0.00 33.13 3.36
3408 7672 7.790782 AATTGTGAGGCCTTAAAAATTAGGA 57.209 32.000 6.77 0.00 33.13 2.94
3413 7677 9.657419 CTCAATTAATTGTGAGGCCTTAAAAAT 57.343 29.630 23.95 0.00 38.08 1.82
3436 7700 9.087871 TGATCCAAATTTAAATTGAAGACCTCA 57.912 29.630 14.04 9.60 0.00 3.86
3439 7703 9.317936 GGATGATCCAAATTTAAATTGAAGACC 57.682 33.333 14.04 3.84 36.28 3.85
3440 7704 9.874205 TGGATGATCCAAATTTAAATTGAAGAC 57.126 29.630 12.63 7.28 45.00 3.01
3465 7729 6.923928 AAATTTGGTGACCAAGTCAAATTG 57.076 33.333 17.50 0.00 44.84 2.32
3466 7730 7.714813 CCTAAAATTTGGTGACCAAGTCAAATT 59.285 33.333 17.50 10.90 44.84 1.82
3467 7731 7.070571 TCCTAAAATTTGGTGACCAAGTCAAAT 59.929 33.333 17.50 4.88 44.84 2.32
3468 7732 6.381420 TCCTAAAATTTGGTGACCAAGTCAAA 59.619 34.615 17.50 2.36 44.84 2.69
3469 7733 5.894393 TCCTAAAATTTGGTGACCAAGTCAA 59.106 36.000 17.50 2.77 44.84 3.18
3470 7734 5.450453 TCCTAAAATTTGGTGACCAAGTCA 58.550 37.500 17.50 3.17 44.84 3.41
3471 7735 5.564848 GCTCCTAAAATTTGGTGACCAAGTC 60.565 44.000 17.50 0.00 44.84 3.01
3472 7736 4.280929 GCTCCTAAAATTTGGTGACCAAGT 59.719 41.667 17.50 12.16 44.84 3.16
3473 7737 4.524328 AGCTCCTAAAATTTGGTGACCAAG 59.476 41.667 17.50 4.41 44.84 3.61
3474 7738 4.479158 AGCTCCTAAAATTTGGTGACCAA 58.521 39.130 14.05 14.05 42.29 3.67
3475 7739 4.079253 GAGCTCCTAAAATTTGGTGACCA 58.921 43.478 0.00 0.00 0.00 4.02
3476 7740 4.336280 AGAGCTCCTAAAATTTGGTGACC 58.664 43.478 10.93 0.00 0.00 4.02
3477 7741 4.396478 GGAGAGCTCCTAAAATTTGGTGAC 59.604 45.833 10.93 0.00 46.16 3.67
3478 7742 4.589908 GGAGAGCTCCTAAAATTTGGTGA 58.410 43.478 10.93 0.00 46.16 4.02
3479 7743 4.972514 GGAGAGCTCCTAAAATTTGGTG 57.027 45.455 10.93 0.00 46.16 4.17
3492 7756 7.498570 AGTGAATTGAATTGAATAGGAGAGCTC 59.501 37.037 5.27 5.27 0.00 4.09
3493 7757 7.344913 AGTGAATTGAATTGAATAGGAGAGCT 58.655 34.615 0.00 0.00 0.00 4.09
3494 7758 7.565323 AGTGAATTGAATTGAATAGGAGAGC 57.435 36.000 0.00 0.00 0.00 4.09
3499 7763 9.956720 GGAACATAGTGAATTGAATTGAATAGG 57.043 33.333 0.00 0.00 0.00 2.57
3530 7794 9.097257 GGTCAATTGAATGAAAGAGTTCAAAAA 57.903 29.630 10.35 0.00 46.66 1.94
3531 7795 8.477256 AGGTCAATTGAATGAAAGAGTTCAAAA 58.523 29.630 10.35 0.00 46.66 2.44
3532 7796 8.010733 AGGTCAATTGAATGAAAGAGTTCAAA 57.989 30.769 10.35 0.00 46.66 2.69
3533 7797 7.587037 AGGTCAATTGAATGAAAGAGTTCAA 57.413 32.000 10.35 3.39 46.66 2.69
3535 7799 8.329203 AGTAGGTCAATTGAATGAAAGAGTTC 57.671 34.615 10.35 0.00 0.00 3.01
3536 7800 7.939039 TGAGTAGGTCAATTGAATGAAAGAGTT 59.061 33.333 10.35 0.00 29.64 3.01
3537 7801 7.453393 TGAGTAGGTCAATTGAATGAAAGAGT 58.547 34.615 10.35 0.00 29.64 3.24
3538 7802 7.912056 TGAGTAGGTCAATTGAATGAAAGAG 57.088 36.000 10.35 0.00 29.64 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.