Multiple sequence alignment - TraesCS2A01G342200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G342200 chr2A 100.000 3619 0 0 1 3619 579073688 579077306 0.000000e+00 6684.0
1 TraesCS2A01G342200 chr2A 87.677 1412 165 7 1275 2683 579461019 579462424 0.000000e+00 1635.0
2 TraesCS2A01G342200 chr2A 96.429 56 2 0 2999 3054 579076637 579076692 3.850000e-15 93.5
3 TraesCS2A01G342200 chr2A 96.429 56 2 0 2950 3005 579076686 579076741 3.850000e-15 93.5
4 TraesCS2A01G342200 chr2D 97.340 3007 70 6 1 3005 411698437 411701435 0.000000e+00 5101.0
5 TraesCS2A01G342200 chr2D 95.336 3173 96 19 69 3237 411412540 411415664 0.000000e+00 4992.0
6 TraesCS2A01G342200 chr2D 85.748 421 55 2 1275 1695 411965340 411965755 1.190000e-119 440.0
7 TraesCS2A01G342200 chr2D 93.214 280 19 0 3238 3517 422732599 422732320 2.600000e-111 412.0
8 TraesCS2A01G342200 chr2D 89.189 259 8 5 2999 3237 411701379 411701637 4.540000e-79 305.0
9 TraesCS2A01G342200 chr2D 97.059 34 1 0 875 908 411694144 411694177 1.400000e-04 58.4
10 TraesCS2A01G342200 chr6D 93.706 286 16 2 3236 3520 199507260 199506976 9.290000e-116 427.0
11 TraesCS2A01G342200 chr6D 91.304 299 25 1 3220 3517 383709108 383708810 1.210000e-109 407.0
12 TraesCS2A01G342200 chr1D 93.286 283 17 2 3240 3520 280035864 280035582 2.010000e-112 416.0
13 TraesCS2A01G342200 chr5D 93.818 275 17 0 3238 3512 33731038 33730764 7.230000e-112 414.0
14 TraesCS2A01G342200 chr4D 92.958 284 19 1 3238 3520 361012889 361013172 2.600000e-111 412.0
15 TraesCS2A01G342200 chr7D 92.883 281 20 0 3237 3517 33625129 33624849 3.360000e-110 409.0
16 TraesCS2A01G342200 chr7D 95.098 102 3 2 3520 3619 614246759 614246658 3.740000e-35 159.0
17 TraesCS2A01G342200 chr4A 92.632 285 19 2 3238 3521 104305837 104305554 3.360000e-110 409.0
18 TraesCS2A01G342200 chr3D 92.632 285 19 2 3238 3520 135918974 135919258 3.360000e-110 409.0
19 TraesCS2A01G342200 chr7A 99.020 102 1 0 3518 3619 418498251 418498352 2.220000e-42 183.0
20 TraesCS2A01G342200 chr1B 96.040 101 4 0 3519 3619 535015373 535015273 8.040000e-37 165.0
21 TraesCS2A01G342200 chr1B 95.050 101 5 0 3519 3619 645295367 645295467 3.740000e-35 159.0
22 TraesCS2A01G342200 chr2B 96.000 100 4 0 3520 3619 105466083 105465984 2.890000e-36 163.0
23 TraesCS2A01G342200 chr6B 95.146 103 3 2 3519 3619 40609234 40609132 1.040000e-35 161.0
24 TraesCS2A01G342200 chr6B 95.146 103 3 2 3519 3619 42404565 42404667 1.040000e-35 161.0
25 TraesCS2A01G342200 chr4B 95.918 98 4 0 3520 3617 9435520 9435423 3.740000e-35 159.0
26 TraesCS2A01G342200 chr5A 94.231 104 4 2 3518 3619 605239850 605239953 1.350000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G342200 chr2A 579073688 579077306 3618 False 2290.333333 6684 97.619333 1 3619 3 chr2A.!!$F2 3618
1 TraesCS2A01G342200 chr2A 579461019 579462424 1405 False 1635.000000 1635 87.677000 1275 2683 1 chr2A.!!$F1 1408
2 TraesCS2A01G342200 chr2D 411412540 411415664 3124 False 4992.000000 4992 95.336000 69 3237 1 chr2D.!!$F1 3168
3 TraesCS2A01G342200 chr2D 411698437 411701637 3200 False 2703.000000 5101 93.264500 1 3237 2 chr2D.!!$F4 3236

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 549 0.032117 ATTAAGGGGGCTTGCCTTCC 60.032 55.0 11.71 12.82 0.0 3.46 F
1504 1512 0.179032 TGCATTTGGTGGTCTCACGT 60.179 50.0 0.00 0.00 44.5 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 1623 0.455410 TGTTCAACTTGCAGTGTGGC 59.545 50.0 0.0 0.0 0.00 5.01 R
3475 3509 0.041238 TCCCTCGTCCTCAACTGGAT 59.959 55.0 0.0 0.0 38.52 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.083489 CTGCAGTTTCCGCGGATTTA 58.917 50.000 31.56 12.17 38.03 1.40
77 78 2.028130 CATCCAAGAGCTAGTCGTCCT 58.972 52.381 0.00 0.00 0.00 3.85
110 111 3.309436 CTCCATCCCAACCACGCGA 62.309 63.158 15.93 0.00 0.00 5.87
230 231 4.148825 CAGCCGCGCTCCCTAGTT 62.149 66.667 5.56 0.00 36.40 2.24
537 539 3.520623 CCCAGCAGAATTAAGGGGG 57.479 57.895 0.00 0.00 35.83 5.40
538 540 0.756815 CCCAGCAGAATTAAGGGGGC 60.757 60.000 0.00 0.00 35.83 5.80
539 541 0.259938 CCAGCAGAATTAAGGGGGCT 59.740 55.000 0.00 0.00 0.00 5.19
540 542 1.342374 CCAGCAGAATTAAGGGGGCTT 60.342 52.381 0.00 0.00 0.00 4.35
541 543 1.753073 CAGCAGAATTAAGGGGGCTTG 59.247 52.381 0.00 0.00 0.00 4.01
543 545 1.114627 CAGAATTAAGGGGGCTTGCC 58.885 55.000 2.49 2.49 0.00 4.52
545 547 1.362584 AGAATTAAGGGGGCTTGCCTT 59.637 47.619 11.71 0.00 0.00 4.35
547 549 0.032117 ATTAAGGGGGCTTGCCTTCC 60.032 55.000 11.71 12.82 0.00 3.46
549 551 1.439524 TAAGGGGGCTTGCCTTCCAA 61.440 55.000 19.97 9.76 0.00 3.53
550 552 2.039462 GGGGGCTTGCCTTCCAAT 59.961 61.111 11.71 0.00 31.91 3.16
573 575 5.514274 TTTCGAGTTTGCTCTCCAATTTT 57.486 34.783 0.00 0.00 39.53 1.82
595 597 2.631062 TGACTCCGAAGTTGGAAGCTTA 59.369 45.455 0.00 0.00 37.64 3.09
596 598 3.260884 TGACTCCGAAGTTGGAAGCTTAT 59.739 43.478 0.00 0.00 37.64 1.73
745 748 2.036346 TCATCGGCTGATCTACACCATG 59.964 50.000 4.63 0.00 30.49 3.66
746 749 0.752658 TCGGCTGATCTACACCATGG 59.247 55.000 11.19 11.19 0.00 3.66
747 750 0.752658 CGGCTGATCTACACCATGGA 59.247 55.000 21.47 0.00 0.00 3.41
748 751 1.269988 CGGCTGATCTACACCATGGAG 60.270 57.143 21.47 14.24 0.00 3.86
749 752 1.542108 GGCTGATCTACACCATGGAGC 60.542 57.143 21.47 14.01 0.00 4.70
824 827 6.837992 TCTTACACAATATTCTCGGCAAAAC 58.162 36.000 0.00 0.00 0.00 2.43
843 849 8.752254 GGCAAAACTAAAAACTCTTTACACATC 58.248 33.333 0.00 0.00 0.00 3.06
909 915 6.166279 TCGAGACTACAGAATTGCATCTTTT 58.834 36.000 0.00 0.00 0.00 2.27
1098 1104 4.430423 CGCGACGCTGCAAGAACC 62.430 66.667 19.02 0.00 34.07 3.62
1345 1353 3.504906 CACCATATCCATTGGACATGCTC 59.495 47.826 17.02 0.00 35.48 4.26
1350 1358 1.634973 TCCATTGGACATGCTCTTGGA 59.365 47.619 0.00 0.00 0.00 3.53
1504 1512 0.179032 TGCATTTGGTGGTCTCACGT 60.179 50.000 0.00 0.00 44.50 4.49
1615 1623 2.359975 GCGACTCAGGGGTTTGGG 60.360 66.667 0.00 0.00 0.00 4.12
1924 1933 6.772716 ACATAGATGTTTTGCTAGTTATGGGG 59.227 38.462 0.00 0.00 37.90 4.96
2098 2107 4.278919 TCATTGTTCATTCTTGAAGCTGCA 59.721 37.500 1.02 0.00 42.41 4.41
2179 2188 6.482898 AATGGCTGCAATATTGATAAACCA 57.517 33.333 19.73 16.53 0.00 3.67
2328 2337 3.423154 CTCGTTTCCAGCACCGGC 61.423 66.667 0.00 0.00 41.61 6.13
2405 2414 0.764271 TCAGGTGTGTCATGGAAGCA 59.236 50.000 0.00 0.00 0.00 3.91
2627 2636 5.825593 AGAACTTCCCATAGTGTCTTCAA 57.174 39.130 0.00 0.00 0.00 2.69
2759 2768 6.587608 GCAGCATTTTGTTTTATCAGTAAGCT 59.412 34.615 0.00 0.00 0.00 3.74
2921 2930 2.688364 AACAAGAAACAAGCGCTAGC 57.312 45.000 12.05 4.06 45.58 3.42
2951 2960 4.082679 TGTTCTGTTTAGTTGGCACGTTTT 60.083 37.500 0.00 0.00 0.00 2.43
2967 2976 2.223923 CGTTTTGGTTTTGGGCAGATGA 60.224 45.455 0.00 0.00 0.00 2.92
2968 2977 3.739519 CGTTTTGGTTTTGGGCAGATGAA 60.740 43.478 0.00 0.00 0.00 2.57
2969 2978 4.388485 GTTTTGGTTTTGGGCAGATGAAT 58.612 39.130 0.00 0.00 0.00 2.57
2970 2979 4.703379 TTTGGTTTTGGGCAGATGAATT 57.297 36.364 0.00 0.00 0.00 2.17
2971 2980 3.681593 TGGTTTTGGGCAGATGAATTG 57.318 42.857 0.00 0.00 0.00 2.32
2972 2981 2.289569 TGGTTTTGGGCAGATGAATTGC 60.290 45.455 0.00 0.00 40.80 3.56
2973 2982 2.289569 GGTTTTGGGCAGATGAATTGCA 60.290 45.455 0.00 0.00 43.28 4.08
2974 2983 3.401182 GTTTTGGGCAGATGAATTGCAA 58.599 40.909 0.00 0.00 43.28 4.08
2975 2984 3.322211 TTTGGGCAGATGAATTGCAAG 57.678 42.857 4.94 0.00 43.28 4.01
2976 2985 2.219080 TGGGCAGATGAATTGCAAGA 57.781 45.000 4.94 0.00 43.28 3.02
2977 2986 2.742348 TGGGCAGATGAATTGCAAGAT 58.258 42.857 4.94 0.00 43.28 2.40
2978 2987 3.101437 TGGGCAGATGAATTGCAAGATT 58.899 40.909 4.94 0.00 43.28 2.40
2979 2988 3.131577 TGGGCAGATGAATTGCAAGATTC 59.868 43.478 4.94 5.53 43.28 2.52
2980 2989 3.131577 GGGCAGATGAATTGCAAGATTCA 59.868 43.478 15.78 15.78 46.64 2.57
2981 2990 4.382254 GGGCAGATGAATTGCAAGATTCAA 60.382 41.667 17.03 4.19 45.96 2.69
2982 2991 4.565564 GGCAGATGAATTGCAAGATTCAAC 59.434 41.667 17.03 14.70 45.96 3.18
2983 2992 5.165676 GCAGATGAATTGCAAGATTCAACA 58.834 37.500 17.03 4.94 45.96 3.33
2984 2993 5.636121 GCAGATGAATTGCAAGATTCAACAA 59.364 36.000 17.03 0.00 45.96 2.83
2985 2994 6.183360 GCAGATGAATTGCAAGATTCAACAAG 60.183 38.462 17.03 12.54 45.96 3.16
2986 2995 7.088272 CAGATGAATTGCAAGATTCAACAAGA 58.912 34.615 17.03 0.00 45.96 3.02
2987 2996 7.597369 CAGATGAATTGCAAGATTCAACAAGAA 59.403 33.333 17.03 0.00 45.96 2.52
2988 2997 8.145767 AGATGAATTGCAAGATTCAACAAGAAA 58.854 29.630 17.03 0.00 45.96 2.52
2989 2998 8.842358 ATGAATTGCAAGATTCAACAAGAAAT 57.158 26.923 17.03 0.00 45.96 2.17
2990 2999 8.665643 TGAATTGCAAGATTCAACAAGAAATT 57.334 26.923 12.04 0.00 41.65 1.82
2991 3000 8.767085 TGAATTGCAAGATTCAACAAGAAATTC 58.233 29.630 12.04 2.88 41.65 2.17
2992 3001 7.662604 ATTGCAAGATTCAACAAGAAATTCC 57.337 32.000 4.94 0.00 40.22 3.01
2993 3002 5.540911 TGCAAGATTCAACAAGAAATTCCC 58.459 37.500 0.00 0.00 40.22 3.97
2994 3003 5.305128 TGCAAGATTCAACAAGAAATTCCCT 59.695 36.000 0.00 0.00 40.22 4.20
2995 3004 5.866092 GCAAGATTCAACAAGAAATTCCCTC 59.134 40.000 0.00 0.00 40.22 4.30
2996 3005 6.294955 GCAAGATTCAACAAGAAATTCCCTCT 60.295 38.462 0.00 0.00 40.22 3.69
2997 3006 7.094205 GCAAGATTCAACAAGAAATTCCCTCTA 60.094 37.037 0.00 0.00 40.22 2.43
2998 3007 8.964772 CAAGATTCAACAAGAAATTCCCTCTAT 58.035 33.333 0.00 0.00 40.22 1.98
2999 3008 9.539194 AAGATTCAACAAGAAATTCCCTCTATT 57.461 29.630 0.00 0.00 40.22 1.73
3000 3009 9.539194 AGATTCAACAAGAAATTCCCTCTATTT 57.461 29.630 0.00 0.00 40.22 1.40
3001 3010 9.578439 GATTCAACAAGAAATTCCCTCTATTTG 57.422 33.333 0.00 0.00 40.22 2.32
3002 3011 7.466746 TCAACAAGAAATTCCCTCTATTTGG 57.533 36.000 0.00 0.00 0.00 3.28
3003 3012 7.010160 TCAACAAGAAATTCCCTCTATTTGGT 58.990 34.615 0.00 0.00 0.00 3.67
3004 3013 7.508977 TCAACAAGAAATTCCCTCTATTTGGTT 59.491 33.333 0.00 0.00 0.00 3.67
3005 3014 7.855784 ACAAGAAATTCCCTCTATTTGGTTT 57.144 32.000 0.00 0.00 0.00 3.27
3006 3015 8.262601 ACAAGAAATTCCCTCTATTTGGTTTT 57.737 30.769 0.00 0.00 0.00 2.43
3007 3016 8.150296 ACAAGAAATTCCCTCTATTTGGTTTTG 58.850 33.333 0.00 0.00 0.00 2.44
3008 3017 7.244886 AGAAATTCCCTCTATTTGGTTTTGG 57.755 36.000 0.00 0.00 0.00 3.28
3009 3018 6.213397 AGAAATTCCCTCTATTTGGTTTTGGG 59.787 38.462 0.00 0.00 34.76 4.12
3010 3019 2.815158 TCCCTCTATTTGGTTTTGGGC 58.185 47.619 0.00 0.00 33.56 5.36
3011 3020 2.110899 TCCCTCTATTTGGTTTTGGGCA 59.889 45.455 0.00 0.00 33.56 5.36
3012 3021 2.497273 CCCTCTATTTGGTTTTGGGCAG 59.503 50.000 0.00 0.00 0.00 4.85
3013 3022 3.430453 CCTCTATTTGGTTTTGGGCAGA 58.570 45.455 0.00 0.00 0.00 4.26
3014 3023 4.026052 CCTCTATTTGGTTTTGGGCAGAT 58.974 43.478 0.00 0.00 0.00 2.90
3015 3024 4.142093 CCTCTATTTGGTTTTGGGCAGATG 60.142 45.833 0.00 0.00 0.00 2.90
3025 3034 2.219080 TGGGCAGATGAATTGCAAGA 57.781 45.000 4.94 0.00 43.28 3.02
3058 3067 8.056407 AGAAATTTCCTCTATTTAGTTGGCAC 57.944 34.615 14.61 0.00 0.00 5.01
3083 3117 3.934068 TCGGTTCTAGTGGATTCAAACC 58.066 45.455 0.00 0.00 34.23 3.27
3151 3185 4.145052 AGATCCAAAACTGTTGTTCTCCC 58.855 43.478 0.00 0.00 34.96 4.30
3162 3196 3.882888 TGTTGTTCTCCCAGCTAAAGTTG 59.117 43.478 0.00 0.00 0.00 3.16
3210 3244 2.666508 ACAATAAGCTACTGTTGCGACG 59.333 45.455 8.49 0.00 35.28 5.12
3231 3265 7.464178 GCGACGATATCTTAAGTTGTGAATGTT 60.464 37.037 0.00 0.00 0.00 2.71
3242 3276 9.689976 TTAAGTTGTGAATGTTGAATATGTTGG 57.310 29.630 0.00 0.00 0.00 3.77
3243 3277 6.690530 AGTTGTGAATGTTGAATATGTTGGG 58.309 36.000 0.00 0.00 0.00 4.12
3244 3278 5.657826 TGTGAATGTTGAATATGTTGGGG 57.342 39.130 0.00 0.00 0.00 4.96
3245 3279 5.328565 TGTGAATGTTGAATATGTTGGGGA 58.671 37.500 0.00 0.00 0.00 4.81
3246 3280 5.777223 TGTGAATGTTGAATATGTTGGGGAA 59.223 36.000 0.00 0.00 0.00 3.97
3247 3281 6.099341 GTGAATGTTGAATATGTTGGGGAAC 58.901 40.000 0.00 0.00 0.00 3.62
3248 3282 4.981806 ATGTTGAATATGTTGGGGAACG 57.018 40.909 0.00 0.00 0.00 3.95
3249 3283 3.757270 TGTTGAATATGTTGGGGAACGT 58.243 40.909 0.00 0.00 0.00 3.99
3250 3284 4.907809 TGTTGAATATGTTGGGGAACGTA 58.092 39.130 0.00 0.00 0.00 3.57
3251 3285 4.938832 TGTTGAATATGTTGGGGAACGTAG 59.061 41.667 0.00 0.00 0.00 3.51
3253 3287 5.936187 TGAATATGTTGGGGAACGTAGTA 57.064 39.130 0.00 0.00 45.00 1.82
3254 3288 6.488769 TGAATATGTTGGGGAACGTAGTAT 57.511 37.500 0.00 0.00 45.00 2.12
3255 3289 6.891388 TGAATATGTTGGGGAACGTAGTATT 58.109 36.000 0.00 0.00 45.00 1.89
3256 3290 7.340256 TGAATATGTTGGGGAACGTAGTATTT 58.660 34.615 0.00 0.00 45.00 1.40
3257 3291 7.496591 TGAATATGTTGGGGAACGTAGTATTTC 59.503 37.037 0.00 0.00 45.00 2.17
3258 3292 4.620589 TGTTGGGGAACGTAGTATTTCA 57.379 40.909 0.00 0.00 45.00 2.69
3259 3293 4.970711 TGTTGGGGAACGTAGTATTTCAA 58.029 39.130 0.00 0.00 45.00 2.69
3260 3294 5.374921 TGTTGGGGAACGTAGTATTTCAAA 58.625 37.500 0.00 0.00 45.00 2.69
3261 3295 5.826737 TGTTGGGGAACGTAGTATTTCAAAA 59.173 36.000 0.00 0.00 45.00 2.44
3262 3296 6.320672 TGTTGGGGAACGTAGTATTTCAAAAA 59.679 34.615 0.00 0.00 45.00 1.94
3282 3316 4.600012 AAAAATCCTACGATCACGCAAG 57.400 40.909 0.00 0.00 43.96 4.01
3283 3317 3.520290 AAATCCTACGATCACGCAAGA 57.480 42.857 0.00 0.00 43.96 3.02
3284 3318 3.735237 AATCCTACGATCACGCAAGAT 57.265 42.857 0.00 0.00 43.96 2.40
3285 3319 2.776312 TCCTACGATCACGCAAGATC 57.224 50.000 5.52 5.52 43.96 2.75
3286 3320 2.298610 TCCTACGATCACGCAAGATCT 58.701 47.619 12.06 0.00 41.74 2.75
3287 3321 3.473625 TCCTACGATCACGCAAGATCTA 58.526 45.455 12.06 4.90 41.74 1.98
3288 3322 4.072839 TCCTACGATCACGCAAGATCTAT 58.927 43.478 12.06 4.73 41.74 1.98
3289 3323 4.154375 TCCTACGATCACGCAAGATCTATC 59.846 45.833 12.06 0.00 41.74 2.08
3290 3324 4.155099 CCTACGATCACGCAAGATCTATCT 59.845 45.833 12.06 0.00 41.74 1.98
3291 3325 5.351740 CCTACGATCACGCAAGATCTATCTA 59.648 44.000 12.06 0.00 41.74 1.98
3292 3326 5.289917 ACGATCACGCAAGATCTATCTAG 57.710 43.478 12.06 0.00 41.74 2.43
3293 3327 4.155099 ACGATCACGCAAGATCTATCTAGG 59.845 45.833 12.06 0.32 41.74 3.02
3294 3328 4.393371 CGATCACGCAAGATCTATCTAGGA 59.607 45.833 12.06 0.00 41.74 2.94
3295 3329 5.447144 CGATCACGCAAGATCTATCTAGGAG 60.447 48.000 12.06 0.00 41.74 3.69
3296 3330 4.974399 TCACGCAAGATCTATCTAGGAGA 58.026 43.478 0.00 0.00 43.62 3.71
3297 3331 5.377478 TCACGCAAGATCTATCTAGGAGAA 58.623 41.667 0.00 0.00 43.62 2.87
3298 3332 5.471797 TCACGCAAGATCTATCTAGGAGAAG 59.528 44.000 0.00 0.00 43.62 2.85
3299 3333 4.217550 ACGCAAGATCTATCTAGGAGAAGC 59.782 45.833 0.00 2.65 43.62 3.86
3300 3334 4.217334 CGCAAGATCTATCTAGGAGAAGCA 59.783 45.833 0.00 0.00 43.02 3.91
3301 3335 5.105797 CGCAAGATCTATCTAGGAGAAGCAT 60.106 44.000 0.00 0.00 43.02 3.79
3302 3336 6.094742 CGCAAGATCTATCTAGGAGAAGCATA 59.905 42.308 0.00 0.00 43.02 3.14
3303 3337 7.201812 CGCAAGATCTATCTAGGAGAAGCATAT 60.202 40.741 0.00 0.00 43.02 1.78
3304 3338 8.137437 GCAAGATCTATCTAGGAGAAGCATATC 58.863 40.741 0.00 0.00 35.76 1.63
3305 3339 9.187996 CAAGATCTATCTAGGAGAAGCATATCA 57.812 37.037 0.00 0.00 35.76 2.15
3306 3340 9.766754 AAGATCTATCTAGGAGAAGCATATCAA 57.233 33.333 0.00 0.00 35.76 2.57
3307 3341 9.189156 AGATCTATCTAGGAGAAGCATATCAAC 57.811 37.037 0.00 0.00 34.85 3.18
3308 3342 7.384439 TCTATCTAGGAGAAGCATATCAACG 57.616 40.000 0.00 0.00 0.00 4.10
3309 3343 7.168905 TCTATCTAGGAGAAGCATATCAACGA 58.831 38.462 0.00 0.00 0.00 3.85
3310 3344 5.697473 TCTAGGAGAAGCATATCAACGAG 57.303 43.478 0.00 0.00 0.00 4.18
3311 3345 5.133941 TCTAGGAGAAGCATATCAACGAGT 58.866 41.667 0.00 0.00 0.00 4.18
3312 3346 4.052159 AGGAGAAGCATATCAACGAGTG 57.948 45.455 0.00 0.00 0.00 3.51
3313 3347 3.701542 AGGAGAAGCATATCAACGAGTGA 59.298 43.478 0.00 0.00 41.67 3.41
3314 3348 4.047822 GGAGAAGCATATCAACGAGTGAG 58.952 47.826 0.00 0.00 40.43 3.51
3315 3349 4.047822 GAGAAGCATATCAACGAGTGAGG 58.952 47.826 0.00 0.00 40.43 3.86
3316 3350 3.701542 AGAAGCATATCAACGAGTGAGGA 59.298 43.478 0.00 0.00 40.43 3.71
3317 3351 3.724508 AGCATATCAACGAGTGAGGAG 57.275 47.619 0.00 0.00 40.43 3.69
3318 3352 3.291584 AGCATATCAACGAGTGAGGAGA 58.708 45.455 0.00 0.00 40.43 3.71
3319 3353 3.701542 AGCATATCAACGAGTGAGGAGAA 59.298 43.478 0.00 0.00 40.43 2.87
3320 3354 4.343526 AGCATATCAACGAGTGAGGAGAAT 59.656 41.667 0.00 0.00 40.43 2.40
3321 3355 4.447054 GCATATCAACGAGTGAGGAGAATG 59.553 45.833 0.00 0.00 40.43 2.67
3322 3356 5.595885 CATATCAACGAGTGAGGAGAATGT 58.404 41.667 0.00 0.00 40.43 2.71
3323 3357 3.303881 TCAACGAGTGAGGAGAATGTG 57.696 47.619 0.00 0.00 0.00 3.21
3324 3358 2.628178 TCAACGAGTGAGGAGAATGTGT 59.372 45.455 0.00 0.00 0.00 3.72
3325 3359 2.989840 CAACGAGTGAGGAGAATGTGTC 59.010 50.000 0.00 0.00 0.00 3.67
3326 3360 1.546476 ACGAGTGAGGAGAATGTGTCC 59.454 52.381 0.00 0.00 0.00 4.02
3327 3361 1.546029 CGAGTGAGGAGAATGTGTCCA 59.454 52.381 0.00 0.00 36.43 4.02
3328 3362 2.167281 CGAGTGAGGAGAATGTGTCCAT 59.833 50.000 0.00 0.00 36.43 3.41
3329 3363 3.529533 GAGTGAGGAGAATGTGTCCATG 58.470 50.000 0.00 0.00 36.43 3.66
3330 3364 2.909006 AGTGAGGAGAATGTGTCCATGT 59.091 45.455 0.00 0.00 36.43 3.21
3331 3365 4.096681 AGTGAGGAGAATGTGTCCATGTA 58.903 43.478 0.00 0.00 36.43 2.29
3332 3366 4.081420 AGTGAGGAGAATGTGTCCATGTAC 60.081 45.833 0.00 0.00 36.43 2.90
3333 3367 3.197766 TGAGGAGAATGTGTCCATGTACC 59.802 47.826 0.00 0.00 36.43 3.34
3334 3368 2.505819 AGGAGAATGTGTCCATGTACCC 59.494 50.000 0.00 0.00 36.43 3.69
3335 3369 2.505819 GGAGAATGTGTCCATGTACCCT 59.494 50.000 0.00 0.00 33.84 4.34
3336 3370 3.432326 GGAGAATGTGTCCATGTACCCTC 60.432 52.174 0.00 0.00 33.84 4.30
3337 3371 2.168521 AGAATGTGTCCATGTACCCTCG 59.831 50.000 0.00 0.00 0.00 4.63
3338 3372 1.568504 ATGTGTCCATGTACCCTCGT 58.431 50.000 0.00 0.00 0.00 4.18
3339 3373 2.219080 TGTGTCCATGTACCCTCGTA 57.781 50.000 0.00 0.00 0.00 3.43
3340 3374 2.097036 TGTGTCCATGTACCCTCGTAG 58.903 52.381 0.00 0.00 0.00 3.51
3341 3375 2.291089 TGTGTCCATGTACCCTCGTAGA 60.291 50.000 0.00 0.00 0.00 2.59
3342 3376 2.098770 GTGTCCATGTACCCTCGTAGAC 59.901 54.545 0.00 0.00 0.00 2.59
3343 3377 1.680207 GTCCATGTACCCTCGTAGACC 59.320 57.143 0.00 0.00 0.00 3.85
3344 3378 0.666913 CCATGTACCCTCGTAGACCG 59.333 60.000 0.00 0.00 38.13 4.79
3345 3379 1.671979 CATGTACCCTCGTAGACCGA 58.328 55.000 0.00 0.00 45.00 4.69
3346 3380 2.019249 CATGTACCCTCGTAGACCGAA 58.981 52.381 0.00 0.00 46.75 4.30
3347 3381 2.198827 TGTACCCTCGTAGACCGAAA 57.801 50.000 0.00 0.00 46.75 3.46
3348 3382 2.513753 TGTACCCTCGTAGACCGAAAA 58.486 47.619 0.00 0.00 46.75 2.29
3349 3383 2.228822 TGTACCCTCGTAGACCGAAAAC 59.771 50.000 0.00 0.00 46.75 2.43
3350 3384 0.242017 ACCCTCGTAGACCGAAAACG 59.758 55.000 0.00 0.00 46.75 3.60
3351 3385 0.457337 CCCTCGTAGACCGAAAACGG 60.457 60.000 7.12 7.12 46.75 4.44
3352 3386 0.523072 CCTCGTAGACCGAAAACGGA 59.477 55.000 15.45 0.00 46.75 4.69
3353 3387 1.068333 CCTCGTAGACCGAAAACGGAA 60.068 52.381 15.45 0.00 46.75 4.30
3354 3388 2.248487 CTCGTAGACCGAAAACGGAAG 58.752 52.381 15.45 2.39 46.75 3.46
3355 3389 0.712222 CGTAGACCGAAAACGGAAGC 59.288 55.000 15.45 4.61 39.56 3.86
3356 3390 1.787012 GTAGACCGAAAACGGAAGCA 58.213 50.000 15.45 0.00 0.00 3.91
3357 3391 2.344025 GTAGACCGAAAACGGAAGCAT 58.656 47.619 15.45 0.00 0.00 3.79
3358 3392 1.892209 AGACCGAAAACGGAAGCATT 58.108 45.000 15.45 0.00 0.00 3.56
3359 3393 2.227194 AGACCGAAAACGGAAGCATTT 58.773 42.857 15.45 0.00 0.00 2.32
3360 3394 3.404899 AGACCGAAAACGGAAGCATTTA 58.595 40.909 15.45 0.00 0.00 1.40
3361 3395 3.435671 AGACCGAAAACGGAAGCATTTAG 59.564 43.478 15.45 0.00 0.00 1.85
3362 3396 3.143728 ACCGAAAACGGAAGCATTTAGT 58.856 40.909 15.45 0.00 0.00 2.24
3363 3397 4.317488 ACCGAAAACGGAAGCATTTAGTA 58.683 39.130 15.45 0.00 0.00 1.82
3364 3398 4.756135 ACCGAAAACGGAAGCATTTAGTAA 59.244 37.500 15.45 0.00 0.00 2.24
3365 3399 5.084055 CCGAAAACGGAAGCATTTAGTAAC 58.916 41.667 2.30 0.00 0.00 2.50
3366 3400 4.779523 CGAAAACGGAAGCATTTAGTAACG 59.220 41.667 0.00 0.00 0.00 3.18
3367 3401 5.613142 CGAAAACGGAAGCATTTAGTAACGT 60.613 40.000 0.00 0.00 34.52 3.99
3368 3402 4.657075 AACGGAAGCATTTAGTAACGTG 57.343 40.909 0.00 0.00 33.27 4.49
3369 3403 2.997986 ACGGAAGCATTTAGTAACGTGG 59.002 45.455 0.00 0.00 31.60 4.94
3370 3404 2.997986 CGGAAGCATTTAGTAACGTGGT 59.002 45.455 0.00 0.00 0.00 4.16
3371 3405 3.434299 CGGAAGCATTTAGTAACGTGGTT 59.566 43.478 10.17 10.17 35.27 3.67
3372 3406 4.668177 CGGAAGCATTTAGTAACGTGGTTG 60.668 45.833 13.60 1.71 33.02 3.77
3373 3407 4.453136 GGAAGCATTTAGTAACGTGGTTGA 59.547 41.667 13.60 0.00 33.02 3.18
3374 3408 5.123344 GGAAGCATTTAGTAACGTGGTTGAT 59.877 40.000 13.60 0.00 33.02 2.57
3375 3409 5.545658 AGCATTTAGTAACGTGGTTGATG 57.454 39.130 0.00 0.00 0.00 3.07
3376 3410 5.001232 AGCATTTAGTAACGTGGTTGATGT 58.999 37.500 0.00 0.00 0.00 3.06
3377 3411 6.167685 AGCATTTAGTAACGTGGTTGATGTA 58.832 36.000 0.00 0.00 0.00 2.29
3378 3412 6.312918 AGCATTTAGTAACGTGGTTGATGTAG 59.687 38.462 0.00 0.00 0.00 2.74
3379 3413 6.091713 GCATTTAGTAACGTGGTTGATGTAGT 59.908 38.462 0.00 0.00 0.00 2.73
3380 3414 7.672738 CATTTAGTAACGTGGTTGATGTAGTC 58.327 38.462 0.00 0.00 0.00 2.59
3381 3415 3.829948 AGTAACGTGGTTGATGTAGTCG 58.170 45.455 0.00 0.00 0.00 4.18
3382 3416 3.503363 AGTAACGTGGTTGATGTAGTCGA 59.497 43.478 0.00 0.00 0.00 4.20
3383 3417 3.374220 AACGTGGTTGATGTAGTCGAA 57.626 42.857 0.00 0.00 0.00 3.71
3384 3418 2.669364 ACGTGGTTGATGTAGTCGAAC 58.331 47.619 0.00 0.00 0.00 3.95
3385 3419 1.647213 CGTGGTTGATGTAGTCGAACG 59.353 52.381 0.00 0.00 29.72 3.95
3386 3420 1.990563 GTGGTTGATGTAGTCGAACGG 59.009 52.381 0.00 0.00 29.72 4.44
3387 3421 0.997196 GGTTGATGTAGTCGAACGGC 59.003 55.000 0.00 0.00 0.00 5.68
3388 3422 1.403780 GGTTGATGTAGTCGAACGGCT 60.404 52.381 6.56 6.56 0.00 5.52
3389 3423 2.334838 GTTGATGTAGTCGAACGGCTT 58.665 47.619 6.65 0.00 0.00 4.35
3390 3424 2.273370 TGATGTAGTCGAACGGCTTC 57.727 50.000 6.65 2.47 0.00 3.86
3397 3431 3.617538 CGAACGGCTTCGCGATCC 61.618 66.667 10.88 13.86 42.72 3.36
3398 3432 2.508439 GAACGGCTTCGCGATCCA 60.508 61.111 22.42 3.95 37.41 3.41
3399 3433 2.047655 AACGGCTTCGCGATCCAA 60.048 55.556 22.42 3.60 37.41 3.53
3400 3434 2.292802 GAACGGCTTCGCGATCCAAC 62.293 60.000 22.42 12.00 37.41 3.77
3401 3435 3.564027 CGGCTTCGCGATCCAACC 61.564 66.667 22.42 13.69 0.00 3.77
3402 3436 3.564027 GGCTTCGCGATCCAACCG 61.564 66.667 10.88 0.00 0.00 4.44
3403 3437 2.508439 GCTTCGCGATCCAACCGA 60.508 61.111 10.88 0.00 0.00 4.69
3404 3438 1.883084 GCTTCGCGATCCAACCGAT 60.883 57.895 10.88 0.00 0.00 4.18
3405 3439 1.429148 GCTTCGCGATCCAACCGATT 61.429 55.000 10.88 0.00 0.00 3.34
3406 3440 0.577269 CTTCGCGATCCAACCGATTC 59.423 55.000 10.88 0.00 0.00 2.52
3407 3441 0.108567 TTCGCGATCCAACCGATTCA 60.109 50.000 10.88 0.00 0.00 2.57
3408 3442 0.108567 TCGCGATCCAACCGATTCAA 60.109 50.000 3.71 0.00 0.00 2.69
3409 3443 0.301687 CGCGATCCAACCGATTCAAG 59.698 55.000 0.00 0.00 0.00 3.02
3410 3444 1.369625 GCGATCCAACCGATTCAAGT 58.630 50.000 0.00 0.00 0.00 3.16
3411 3445 2.546778 GCGATCCAACCGATTCAAGTA 58.453 47.619 0.00 0.00 0.00 2.24
3412 3446 2.284417 GCGATCCAACCGATTCAAGTAC 59.716 50.000 0.00 0.00 0.00 2.73
3413 3447 2.864343 CGATCCAACCGATTCAAGTACC 59.136 50.000 0.00 0.00 0.00 3.34
3414 3448 2.373540 TCCAACCGATTCAAGTACCG 57.626 50.000 0.00 0.00 0.00 4.02
3415 3449 1.894466 TCCAACCGATTCAAGTACCGA 59.106 47.619 0.00 0.00 0.00 4.69
3416 3450 2.299582 TCCAACCGATTCAAGTACCGAA 59.700 45.455 0.00 0.00 0.00 4.30
3417 3451 2.414138 CCAACCGATTCAAGTACCGAAC 59.586 50.000 0.00 0.00 0.00 3.95
3418 3452 1.986698 ACCGATTCAAGTACCGAACG 58.013 50.000 0.00 4.74 0.00 3.95
3419 3453 1.270550 ACCGATTCAAGTACCGAACGT 59.729 47.619 0.00 0.00 0.00 3.99
3420 3454 2.487762 ACCGATTCAAGTACCGAACGTA 59.512 45.455 0.00 0.00 0.00 3.57
3421 3455 2.848302 CCGATTCAAGTACCGAACGTAC 59.152 50.000 0.00 0.00 46.69 3.67
3427 3461 2.729378 GTACCGAACGTACTGCACC 58.271 57.895 0.00 0.00 43.53 5.01
3428 3462 0.242017 GTACCGAACGTACTGCACCT 59.758 55.000 0.00 0.00 43.53 4.00
3429 3463 0.523072 TACCGAACGTACTGCACCTC 59.477 55.000 0.00 0.00 0.00 3.85
3430 3464 1.445582 CCGAACGTACTGCACCTCC 60.446 63.158 0.00 0.00 0.00 4.30
3431 3465 1.800315 CGAACGTACTGCACCTCCG 60.800 63.158 0.00 0.00 0.00 4.63
3432 3466 2.048503 AACGTACTGCACCTCCGC 60.049 61.111 0.00 0.00 0.00 5.54
3433 3467 3.909258 AACGTACTGCACCTCCGCG 62.909 63.158 0.00 0.00 33.35 6.46
3434 3468 4.415332 CGTACTGCACCTCCGCGT 62.415 66.667 4.92 0.00 33.35 6.01
3435 3469 2.048503 GTACTGCACCTCCGCGTT 60.049 61.111 4.92 0.00 33.35 4.84
3436 3470 2.092882 GTACTGCACCTCCGCGTTC 61.093 63.158 4.92 0.00 33.35 3.95
3437 3471 2.566570 TACTGCACCTCCGCGTTCA 61.567 57.895 4.92 0.00 33.35 3.18
3438 3472 2.486636 TACTGCACCTCCGCGTTCAG 62.487 60.000 4.92 0.00 33.79 3.02
3450 3484 2.297625 CGTTCAGCACACGTTCAGT 58.702 52.632 0.00 0.00 32.80 3.41
3451 3485 0.650512 CGTTCAGCACACGTTCAGTT 59.349 50.000 0.00 0.00 32.80 3.16
3452 3486 1.332028 CGTTCAGCACACGTTCAGTTC 60.332 52.381 0.00 0.00 32.80 3.01
3453 3487 0.927537 TTCAGCACACGTTCAGTTCG 59.072 50.000 0.00 0.00 0.00 3.95
3454 3488 0.101579 TCAGCACACGTTCAGTTCGA 59.898 50.000 0.00 0.00 0.00 3.71
3455 3489 1.139989 CAGCACACGTTCAGTTCGAT 58.860 50.000 0.00 0.00 0.00 3.59
3456 3490 1.136529 CAGCACACGTTCAGTTCGATG 60.137 52.381 0.00 0.00 0.00 3.84
3457 3491 1.136690 GCACACGTTCAGTTCGATGA 58.863 50.000 0.00 0.00 0.00 2.92
3458 3492 1.136611 GCACACGTTCAGTTCGATGAC 60.137 52.381 0.00 0.00 0.00 3.06
3459 3493 2.124122 CACACGTTCAGTTCGATGACA 58.876 47.619 0.00 0.00 0.00 3.58
3460 3494 2.731451 CACACGTTCAGTTCGATGACAT 59.269 45.455 0.00 0.00 0.00 3.06
3461 3495 2.731451 ACACGTTCAGTTCGATGACATG 59.269 45.455 0.00 0.00 0.00 3.21
3462 3496 1.726791 ACGTTCAGTTCGATGACATGC 59.273 47.619 0.00 0.00 0.00 4.06
3463 3497 1.061131 CGTTCAGTTCGATGACATGCC 59.939 52.381 0.00 0.00 0.00 4.40
3464 3498 2.350522 GTTCAGTTCGATGACATGCCT 58.649 47.619 0.00 0.00 0.00 4.75
3465 3499 2.299993 TCAGTTCGATGACATGCCTC 57.700 50.000 0.00 0.00 0.00 4.70
3466 3500 0.926155 CAGTTCGATGACATGCCTCG 59.074 55.000 0.00 0.00 0.00 4.63
3467 3501 0.817654 AGTTCGATGACATGCCTCGA 59.182 50.000 9.89 9.89 39.45 4.04
3468 3502 1.410517 AGTTCGATGACATGCCTCGAT 59.589 47.619 13.48 0.71 40.69 3.59
3469 3503 1.789464 GTTCGATGACATGCCTCGATC 59.211 52.381 13.48 10.14 40.69 3.69
3470 3504 1.322442 TCGATGACATGCCTCGATCT 58.678 50.000 9.89 0.00 36.57 2.75
3471 3505 1.268079 TCGATGACATGCCTCGATCTC 59.732 52.381 9.89 0.00 36.57 2.75
3472 3506 1.269174 CGATGACATGCCTCGATCTCT 59.731 52.381 6.36 0.00 34.41 3.10
3473 3507 2.288091 CGATGACATGCCTCGATCTCTT 60.288 50.000 6.36 0.00 34.41 2.85
3474 3508 2.591571 TGACATGCCTCGATCTCTTG 57.408 50.000 0.00 0.00 0.00 3.02
3475 3509 2.102578 TGACATGCCTCGATCTCTTGA 58.897 47.619 0.00 0.00 0.00 3.02
3476 3510 2.697229 TGACATGCCTCGATCTCTTGAT 59.303 45.455 0.00 0.00 35.26 2.57
3477 3511 3.243670 TGACATGCCTCGATCTCTTGATC 60.244 47.826 0.00 0.00 44.14 2.92
3478 3512 2.036992 ACATGCCTCGATCTCTTGATCC 59.963 50.000 0.00 0.00 44.61 3.36
3479 3513 1.780503 TGCCTCGATCTCTTGATCCA 58.219 50.000 0.00 0.00 44.61 3.41
3480 3514 1.685517 TGCCTCGATCTCTTGATCCAG 59.314 52.381 0.00 0.00 44.61 3.86
3481 3515 1.686052 GCCTCGATCTCTTGATCCAGT 59.314 52.381 0.00 0.00 44.61 4.00
3482 3516 2.102252 GCCTCGATCTCTTGATCCAGTT 59.898 50.000 0.00 0.00 44.61 3.16
3483 3517 3.715495 CCTCGATCTCTTGATCCAGTTG 58.285 50.000 0.00 0.00 44.61 3.16
3484 3518 3.382865 CCTCGATCTCTTGATCCAGTTGA 59.617 47.826 0.00 0.00 44.61 3.18
3485 3519 4.499526 CCTCGATCTCTTGATCCAGTTGAG 60.500 50.000 0.00 0.00 44.61 3.02
3486 3520 3.382865 TCGATCTCTTGATCCAGTTGAGG 59.617 47.826 0.00 0.00 44.61 3.86
3487 3521 3.382865 CGATCTCTTGATCCAGTTGAGGA 59.617 47.826 0.00 0.00 44.61 3.71
3488 3522 4.692228 GATCTCTTGATCCAGTTGAGGAC 58.308 47.826 0.00 0.00 42.35 3.85
3489 3523 2.493675 TCTCTTGATCCAGTTGAGGACG 59.506 50.000 0.00 0.00 41.30 4.79
3490 3524 2.493675 CTCTTGATCCAGTTGAGGACGA 59.506 50.000 0.00 0.00 41.30 4.20
3491 3525 2.493675 TCTTGATCCAGTTGAGGACGAG 59.506 50.000 0.00 0.00 41.30 4.18
3492 3526 1.186200 TGATCCAGTTGAGGACGAGG 58.814 55.000 0.00 0.00 41.30 4.63
3493 3527 0.461961 GATCCAGTTGAGGACGAGGG 59.538 60.000 0.00 0.00 41.30 4.30
3494 3528 0.041238 ATCCAGTTGAGGACGAGGGA 59.959 55.000 0.00 0.00 41.30 4.20
3495 3529 0.612174 TCCAGTTGAGGACGAGGGAG 60.612 60.000 0.00 0.00 31.23 4.30
3496 3530 0.612174 CCAGTTGAGGACGAGGGAGA 60.612 60.000 0.00 0.00 0.00 3.71
3497 3531 0.814457 CAGTTGAGGACGAGGGAGAG 59.186 60.000 0.00 0.00 0.00 3.20
3498 3532 0.406361 AGTTGAGGACGAGGGAGAGT 59.594 55.000 0.00 0.00 0.00 3.24
3499 3533 1.203075 AGTTGAGGACGAGGGAGAGTT 60.203 52.381 0.00 0.00 0.00 3.01
3500 3534 1.202817 GTTGAGGACGAGGGAGAGTTC 59.797 57.143 0.00 0.00 0.00 3.01
3501 3535 0.323542 TGAGGACGAGGGAGAGTTCC 60.324 60.000 0.00 0.00 43.23 3.62
3502 3536 1.378124 GAGGACGAGGGAGAGTTCCG 61.378 65.000 0.00 0.00 45.04 4.30
3503 3537 1.678300 GGACGAGGGAGAGTTCCGT 60.678 63.158 0.00 0.00 45.04 4.69
3507 3541 3.701454 AGGGAGAGTTCCGTCAGC 58.299 61.111 0.00 0.00 45.04 4.26
3508 3542 1.228894 AGGGAGAGTTCCGTCAGCA 60.229 57.895 0.00 0.00 45.04 4.41
3509 3543 1.079750 GGGAGAGTTCCGTCAGCAC 60.080 63.158 0.00 0.00 45.04 4.40
3510 3544 1.444553 GGAGAGTTCCGTCAGCACG 60.445 63.158 0.00 0.00 46.29 5.34
3547 3581 6.183309 GCGAAGGCAGGAATAATTTATAGG 57.817 41.667 0.00 0.00 39.62 2.57
3548 3582 5.705905 GCGAAGGCAGGAATAATTTATAGGT 59.294 40.000 0.00 0.00 39.62 3.08
3549 3583 6.348540 GCGAAGGCAGGAATAATTTATAGGTG 60.349 42.308 0.00 0.00 39.62 4.00
3550 3584 6.710744 CGAAGGCAGGAATAATTTATAGGTGT 59.289 38.462 0.00 0.00 0.00 4.16
3551 3585 7.307989 CGAAGGCAGGAATAATTTATAGGTGTG 60.308 40.741 0.00 0.00 0.00 3.82
3552 3586 6.306987 AGGCAGGAATAATTTATAGGTGTGG 58.693 40.000 0.00 0.00 0.00 4.17
3553 3587 5.048013 GGCAGGAATAATTTATAGGTGTGGC 60.048 44.000 0.00 0.00 0.00 5.01
3554 3588 5.334879 GCAGGAATAATTTATAGGTGTGGCG 60.335 44.000 0.00 0.00 0.00 5.69
3555 3589 5.181245 CAGGAATAATTTATAGGTGTGGCGG 59.819 44.000 0.00 0.00 0.00 6.13
3556 3590 5.072600 AGGAATAATTTATAGGTGTGGCGGA 59.927 40.000 0.00 0.00 0.00 5.54
3557 3591 5.944007 GGAATAATTTATAGGTGTGGCGGAT 59.056 40.000 0.00 0.00 0.00 4.18
3558 3592 6.433093 GGAATAATTTATAGGTGTGGCGGATT 59.567 38.462 0.00 0.00 0.00 3.01
3559 3593 7.039993 GGAATAATTTATAGGTGTGGCGGATTT 60.040 37.037 0.00 0.00 0.00 2.17
3560 3594 5.767816 AATTTATAGGTGTGGCGGATTTC 57.232 39.130 0.00 0.00 0.00 2.17
3561 3595 3.916359 TTATAGGTGTGGCGGATTTCA 57.084 42.857 0.00 0.00 0.00 2.69
3562 3596 2.038387 ATAGGTGTGGCGGATTTCAC 57.962 50.000 0.00 0.00 34.71 3.18
3563 3597 0.390603 TAGGTGTGGCGGATTTCACG 60.391 55.000 0.00 0.00 36.74 4.35
3564 3598 1.669760 GGTGTGGCGGATTTCACGA 60.670 57.895 0.00 0.00 36.74 4.35
3565 3599 1.635663 GGTGTGGCGGATTTCACGAG 61.636 60.000 0.00 0.00 36.74 4.18
3566 3600 1.375396 TGTGGCGGATTTCACGAGG 60.375 57.895 0.00 0.00 36.74 4.63
3567 3601 1.375523 GTGGCGGATTTCACGAGGT 60.376 57.895 0.00 0.00 0.00 3.85
3568 3602 0.108520 GTGGCGGATTTCACGAGGTA 60.109 55.000 0.00 0.00 0.00 3.08
3569 3603 0.609151 TGGCGGATTTCACGAGGTAA 59.391 50.000 0.00 0.00 0.00 2.85
3570 3604 1.002201 TGGCGGATTTCACGAGGTAAA 59.998 47.619 0.00 0.00 0.00 2.01
3571 3605 1.664151 GGCGGATTTCACGAGGTAAAG 59.336 52.381 0.00 0.00 0.00 1.85
3572 3606 2.613691 GCGGATTTCACGAGGTAAAGA 58.386 47.619 0.00 0.00 0.00 2.52
3573 3607 2.347755 GCGGATTTCACGAGGTAAAGAC 59.652 50.000 0.00 0.00 0.00 3.01
3596 3630 9.273016 AGACCAATGTACAATATAACTATGTGC 57.727 33.333 0.00 0.00 0.00 4.57
3597 3631 8.391075 ACCAATGTACAATATAACTATGTGCC 57.609 34.615 0.00 0.00 0.00 5.01
3598 3632 7.172532 ACCAATGTACAATATAACTATGTGCCG 59.827 37.037 0.00 0.00 0.00 5.69
3599 3633 6.721571 ATGTACAATATAACTATGTGCCGC 57.278 37.500 0.00 0.00 0.00 6.53
3600 3634 5.849510 TGTACAATATAACTATGTGCCGCT 58.150 37.500 0.00 0.00 0.00 5.52
3601 3635 5.924254 TGTACAATATAACTATGTGCCGCTC 59.076 40.000 0.00 0.00 0.00 5.03
3602 3636 3.987868 ACAATATAACTATGTGCCGCTCG 59.012 43.478 0.00 0.00 0.00 5.03
3603 3637 3.936372 ATATAACTATGTGCCGCTCGT 57.064 42.857 0.00 0.00 0.00 4.18
3604 3638 1.852942 ATAACTATGTGCCGCTCGTG 58.147 50.000 0.00 0.00 0.00 4.35
3605 3639 0.804544 TAACTATGTGCCGCTCGTGC 60.805 55.000 0.00 0.00 0.00 5.34
3606 3640 2.202797 CTATGTGCCGCTCGTGCT 60.203 61.111 7.97 0.00 36.97 4.40
3607 3641 2.202743 TATGTGCCGCTCGTGCTC 60.203 61.111 7.97 0.06 36.97 4.26
3608 3642 2.619840 CTATGTGCCGCTCGTGCTCT 62.620 60.000 7.97 0.00 36.97 4.09
3609 3643 2.889154 TATGTGCCGCTCGTGCTCTG 62.889 60.000 7.97 0.00 36.97 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.102809 TTGTGCAGAACCAGCCTGTG 61.103 55.000 0.00 0.00 34.29 3.66
10 11 1.745232 ACGAAACTTGTGCAGAACCA 58.255 45.000 0.00 0.00 0.00 3.67
77 78 1.712056 TGGAGTTCGGACTTTGGAGA 58.288 50.000 0.00 0.00 35.88 3.71
110 111 4.904853 GGAAACCCTAGATCTGAGAGGAAT 59.095 45.833 11.08 0.00 31.45 3.01
227 228 2.279918 AAAGACGACGGCGCAACT 60.280 55.556 12.58 4.91 42.48 3.16
230 231 1.155424 AAAAGAAAGACGACGGCGCA 61.155 50.000 12.58 0.00 42.48 6.09
447 448 0.708370 CGGATCGATTTCGGTATGCG 59.292 55.000 0.00 1.10 40.29 4.73
537 539 2.029918 ACTCGAAAATTGGAAGGCAAGC 60.030 45.455 0.00 0.00 0.00 4.01
538 540 3.923017 ACTCGAAAATTGGAAGGCAAG 57.077 42.857 0.00 0.00 0.00 4.01
539 541 4.367450 CAAACTCGAAAATTGGAAGGCAA 58.633 39.130 0.00 0.00 0.00 4.52
540 542 3.798548 GCAAACTCGAAAATTGGAAGGCA 60.799 43.478 6.62 0.00 0.00 4.75
541 543 2.731451 GCAAACTCGAAAATTGGAAGGC 59.269 45.455 6.62 0.00 0.00 4.35
573 575 1.416401 AGCTTCCAACTTCGGAGTCAA 59.584 47.619 0.00 0.00 36.12 3.18
595 597 6.914270 TGAGGGGATATATAATGGCTTGGTAT 59.086 38.462 0.00 0.00 0.00 2.73
596 598 6.276248 TGAGGGGATATATAATGGCTTGGTA 58.724 40.000 0.00 0.00 0.00 3.25
632 635 0.674895 ACTGAACCTGATGGCTTCGC 60.675 55.000 0.00 0.00 36.63 4.70
698 701 1.826487 GAGGAGCGAGGGAGGTCTC 60.826 68.421 0.00 0.00 38.56 3.36
699 702 2.277404 GAGGAGCGAGGGAGGTCT 59.723 66.667 0.00 0.00 38.56 3.85
824 827 6.303259 GCTTGCGATGTGTAAAGAGTTTTTAG 59.697 38.462 0.00 0.00 0.00 1.85
843 849 3.114809 TGACAAATGAAAACTGCTTGCG 58.885 40.909 0.00 0.00 0.00 4.85
941 947 3.251245 TCGAAGGCGCACTTTCAAAAATA 59.749 39.130 10.83 0.00 40.21 1.40
942 948 2.034053 TCGAAGGCGCACTTTCAAAAAT 59.966 40.909 10.83 0.00 40.21 1.82
1008 1014 3.085443 AGCATGTCTTCTCGATTACCG 57.915 47.619 0.00 0.00 40.25 4.02
1345 1353 2.486191 GGGTAGCCATGATCTGTCCAAG 60.486 54.545 5.96 0.00 0.00 3.61
1350 1358 1.583556 TGTGGGTAGCCATGATCTGT 58.416 50.000 18.29 0.00 0.00 3.41
1504 1512 1.614903 CAAATCCTGCAGTTTGAGGCA 59.385 47.619 19.85 0.00 37.48 4.75
1615 1623 0.455410 TGTTCAACTTGCAGTGTGGC 59.545 50.000 0.00 0.00 0.00 5.01
2098 2107 5.717119 AATATAGCTCCTTCAAGTTGGGT 57.283 39.130 2.34 0.00 0.00 4.51
2328 2337 6.090898 CCAAAGATTACTAGTGTTTCCAGACG 59.909 42.308 5.39 0.00 0.00 4.18
2405 2414 4.579869 ACACATTCTTTAGATTCACCGCT 58.420 39.130 0.00 0.00 0.00 5.52
2759 2768 4.220382 CACAAAAAGGAGCATATGTTCCCA 59.780 41.667 29.04 0.00 45.27 4.37
2921 2930 4.785341 GCCAACTAAACAGAACACGTTCAG 60.785 45.833 12.21 6.72 41.84 3.02
2926 2935 2.598907 CGTGCCAACTAAACAGAACACG 60.599 50.000 0.00 0.00 42.79 4.49
2951 2960 2.289569 GCAATTCATCTGCCCAAAACCA 60.290 45.455 0.00 0.00 33.51 3.67
2967 2976 7.173735 GGGAATTTCTTGTTGAATCTTGCAATT 59.826 33.333 0.00 0.00 34.24 2.32
2968 2977 6.652062 GGGAATTTCTTGTTGAATCTTGCAAT 59.348 34.615 0.00 0.00 34.24 3.56
2969 2978 5.990996 GGGAATTTCTTGTTGAATCTTGCAA 59.009 36.000 0.00 0.00 34.24 4.08
2970 2979 5.305128 AGGGAATTTCTTGTTGAATCTTGCA 59.695 36.000 0.00 0.00 34.24 4.08
2971 2980 5.787380 AGGGAATTTCTTGTTGAATCTTGC 58.213 37.500 0.00 0.00 34.24 4.01
2972 2981 7.224522 AGAGGGAATTTCTTGTTGAATCTTG 57.775 36.000 0.00 0.00 34.24 3.02
2973 2982 9.539194 AATAGAGGGAATTTCTTGTTGAATCTT 57.461 29.630 0.00 0.00 34.24 2.40
2974 2983 9.539194 AAATAGAGGGAATTTCTTGTTGAATCT 57.461 29.630 0.00 0.00 34.24 2.40
2975 2984 9.578439 CAAATAGAGGGAATTTCTTGTTGAATC 57.422 33.333 0.00 0.00 34.24 2.52
2976 2985 8.534496 CCAAATAGAGGGAATTTCTTGTTGAAT 58.466 33.333 0.00 0.00 34.24 2.57
2977 2986 7.508977 ACCAAATAGAGGGAATTTCTTGTTGAA 59.491 33.333 0.00 0.00 0.00 2.69
2978 2987 7.010160 ACCAAATAGAGGGAATTTCTTGTTGA 58.990 34.615 0.00 0.00 0.00 3.18
2979 2988 7.232118 ACCAAATAGAGGGAATTTCTTGTTG 57.768 36.000 0.00 0.00 0.00 3.33
2980 2989 7.855784 AACCAAATAGAGGGAATTTCTTGTT 57.144 32.000 0.00 0.00 0.00 2.83
2981 2990 7.855784 AAACCAAATAGAGGGAATTTCTTGT 57.144 32.000 0.00 0.00 0.00 3.16
2982 2991 7.603784 CCAAAACCAAATAGAGGGAATTTCTTG 59.396 37.037 0.00 0.00 0.00 3.02
2983 2992 7.256655 CCCAAAACCAAATAGAGGGAATTTCTT 60.257 37.037 0.00 0.00 36.96 2.52
2984 2993 6.213397 CCCAAAACCAAATAGAGGGAATTTCT 59.787 38.462 0.00 0.00 36.96 2.52
2985 2994 6.406370 CCCAAAACCAAATAGAGGGAATTTC 58.594 40.000 0.00 0.00 36.96 2.17
2986 2995 5.280470 GCCCAAAACCAAATAGAGGGAATTT 60.280 40.000 0.00 0.00 36.96 1.82
2987 2996 4.225042 GCCCAAAACCAAATAGAGGGAATT 59.775 41.667 0.00 0.00 36.96 2.17
2988 2997 3.774766 GCCCAAAACCAAATAGAGGGAAT 59.225 43.478 0.00 0.00 36.96 3.01
2989 2998 3.169908 GCCCAAAACCAAATAGAGGGAA 58.830 45.455 0.00 0.00 36.96 3.97
2990 2999 2.110899 TGCCCAAAACCAAATAGAGGGA 59.889 45.455 0.00 0.00 36.96 4.20
2991 3000 2.497273 CTGCCCAAAACCAAATAGAGGG 59.503 50.000 0.00 0.00 37.87 4.30
2992 3001 3.430453 TCTGCCCAAAACCAAATAGAGG 58.570 45.455 0.00 0.00 0.00 3.69
2993 3002 4.706476 TCATCTGCCCAAAACCAAATAGAG 59.294 41.667 0.00 0.00 0.00 2.43
2994 3003 4.671831 TCATCTGCCCAAAACCAAATAGA 58.328 39.130 0.00 0.00 0.00 1.98
2995 3004 5.404466 TTCATCTGCCCAAAACCAAATAG 57.596 39.130 0.00 0.00 0.00 1.73
2996 3005 6.171921 CAATTCATCTGCCCAAAACCAAATA 58.828 36.000 0.00 0.00 0.00 1.40
2997 3006 4.914177 ATTCATCTGCCCAAAACCAAAT 57.086 36.364 0.00 0.00 0.00 2.32
2998 3007 4.387598 CAATTCATCTGCCCAAAACCAAA 58.612 39.130 0.00 0.00 0.00 3.28
2999 3008 3.806507 GCAATTCATCTGCCCAAAACCAA 60.807 43.478 0.00 0.00 33.51 3.67
3000 3009 2.289569 GCAATTCATCTGCCCAAAACCA 60.290 45.455 0.00 0.00 33.51 3.67
3001 3010 2.289569 TGCAATTCATCTGCCCAAAACC 60.290 45.455 0.00 0.00 39.13 3.27
3002 3011 3.042871 TGCAATTCATCTGCCCAAAAC 57.957 42.857 0.00 0.00 39.13 2.43
3003 3012 3.324268 TCTTGCAATTCATCTGCCCAAAA 59.676 39.130 0.00 0.00 39.13 2.44
3004 3013 2.898612 TCTTGCAATTCATCTGCCCAAA 59.101 40.909 0.00 0.00 39.13 3.28
3005 3014 2.527497 TCTTGCAATTCATCTGCCCAA 58.473 42.857 0.00 0.00 39.13 4.12
3006 3015 2.219080 TCTTGCAATTCATCTGCCCA 57.781 45.000 0.00 0.00 39.13 5.36
3007 3016 3.131577 TGAATCTTGCAATTCATCTGCCC 59.868 43.478 10.69 0.00 39.98 5.36
3008 3017 4.380841 TGAATCTTGCAATTCATCTGCC 57.619 40.909 10.69 0.00 39.98 4.85
3009 3018 5.165676 TGTTGAATCTTGCAATTCATCTGC 58.834 37.500 14.52 7.75 43.30 4.26
3010 3019 7.088272 TCTTGTTGAATCTTGCAATTCATCTG 58.912 34.615 14.52 11.18 43.30 2.90
3011 3020 7.223260 TCTTGTTGAATCTTGCAATTCATCT 57.777 32.000 14.52 0.00 43.30 2.90
3012 3021 7.878477 TTCTTGTTGAATCTTGCAATTCATC 57.122 32.000 14.52 13.91 43.30 2.92
3013 3022 8.842358 ATTTCTTGTTGAATCTTGCAATTCAT 57.158 26.923 14.52 0.00 43.30 2.57
3014 3023 8.665643 AATTTCTTGTTGAATCTTGCAATTCA 57.334 26.923 10.69 10.69 42.42 2.57
3015 3024 9.590088 GAAATTTCTTGTTGAATCTTGCAATTC 57.410 29.630 11.05 2.33 36.40 2.17
3058 3067 3.581755 TGAATCCACTAGAACCGAAACG 58.418 45.455 0.00 0.00 0.00 3.60
3083 3117 2.632028 AGGATCACCCAATCATCTCGAG 59.368 50.000 5.93 5.93 37.41 4.04
3151 3185 7.189693 TGTTCATAGTTCACAACTTTAGCTG 57.810 36.000 0.00 0.00 42.81 4.24
3162 3196 7.426456 CGCTTGTTGATTATGTTCATAGTTCAC 59.574 37.037 6.88 1.67 0.00 3.18
3231 3265 4.829872 ACTACGTTCCCCAACATATTCA 57.170 40.909 0.00 0.00 32.14 2.57
3237 3271 4.620589 TGAAATACTACGTTCCCCAACA 57.379 40.909 0.00 0.00 32.14 3.33
3238 3272 5.945466 TTTGAAATACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
3239 3273 6.956202 TTTTTGAAATACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
3261 3295 4.250464 TCTTGCGTGATCGTAGGATTTTT 58.750 39.130 0.00 0.00 39.49 1.94
3262 3296 3.857052 TCTTGCGTGATCGTAGGATTTT 58.143 40.909 0.00 0.00 39.49 1.82
3263 3297 3.520290 TCTTGCGTGATCGTAGGATTT 57.480 42.857 0.00 0.00 39.49 2.17
3264 3298 3.319405 AGATCTTGCGTGATCGTAGGATT 59.681 43.478 11.44 0.00 44.79 3.01
3265 3299 2.887783 AGATCTTGCGTGATCGTAGGAT 59.112 45.455 11.44 0.00 46.54 3.24
3266 3300 2.298610 AGATCTTGCGTGATCGTAGGA 58.701 47.619 11.44 0.00 45.35 2.94
3267 3301 2.783828 AGATCTTGCGTGATCGTAGG 57.216 50.000 11.44 0.00 45.35 3.18
3268 3302 5.289917 AGATAGATCTTGCGTGATCGTAG 57.710 43.478 0.00 0.00 45.35 3.51
3269 3303 5.351740 CCTAGATAGATCTTGCGTGATCGTA 59.648 44.000 0.00 6.70 45.35 3.43
3270 3304 4.155099 CCTAGATAGATCTTGCGTGATCGT 59.845 45.833 0.00 6.35 45.35 3.73
3271 3305 4.393371 TCCTAGATAGATCTTGCGTGATCG 59.607 45.833 0.00 0.00 45.35 3.69
3272 3306 5.645929 TCTCCTAGATAGATCTTGCGTGATC 59.354 44.000 0.00 9.82 42.18 2.92
3273 3307 5.565509 TCTCCTAGATAGATCTTGCGTGAT 58.434 41.667 0.00 0.00 38.32 3.06
3274 3308 4.974399 TCTCCTAGATAGATCTTGCGTGA 58.026 43.478 0.00 0.00 38.32 4.35
3275 3309 5.697473 TTCTCCTAGATAGATCTTGCGTG 57.303 43.478 0.00 0.00 38.32 5.34
3276 3310 4.217550 GCTTCTCCTAGATAGATCTTGCGT 59.782 45.833 0.00 0.00 38.32 5.24
3277 3311 4.217334 TGCTTCTCCTAGATAGATCTTGCG 59.783 45.833 0.00 0.00 38.32 4.85
3278 3312 5.720371 TGCTTCTCCTAGATAGATCTTGC 57.280 43.478 0.00 0.00 38.32 4.01
3279 3313 9.187996 TGATATGCTTCTCCTAGATAGATCTTG 57.812 37.037 0.00 0.00 38.32 3.02
3280 3314 9.766754 TTGATATGCTTCTCCTAGATAGATCTT 57.233 33.333 0.00 0.00 38.32 2.40
3281 3315 9.189156 GTTGATATGCTTCTCCTAGATAGATCT 57.811 37.037 0.00 0.00 40.86 2.75
3282 3316 8.128582 CGTTGATATGCTTCTCCTAGATAGATC 58.871 40.741 0.00 0.00 0.00 2.75
3283 3317 7.831690 TCGTTGATATGCTTCTCCTAGATAGAT 59.168 37.037 0.00 0.00 0.00 1.98
3284 3318 7.168905 TCGTTGATATGCTTCTCCTAGATAGA 58.831 38.462 0.00 0.00 0.00 1.98
3285 3319 7.120579 ACTCGTTGATATGCTTCTCCTAGATAG 59.879 40.741 0.00 0.00 0.00 2.08
3286 3320 6.943146 ACTCGTTGATATGCTTCTCCTAGATA 59.057 38.462 0.00 0.00 0.00 1.98
3287 3321 5.772672 ACTCGTTGATATGCTTCTCCTAGAT 59.227 40.000 0.00 0.00 0.00 1.98
3288 3322 5.009110 CACTCGTTGATATGCTTCTCCTAGA 59.991 44.000 0.00 0.00 0.00 2.43
3289 3323 5.009110 TCACTCGTTGATATGCTTCTCCTAG 59.991 44.000 0.00 0.00 0.00 3.02
3290 3324 4.887655 TCACTCGTTGATATGCTTCTCCTA 59.112 41.667 0.00 0.00 0.00 2.94
3291 3325 3.701542 TCACTCGTTGATATGCTTCTCCT 59.298 43.478 0.00 0.00 0.00 3.69
3292 3326 4.046938 TCACTCGTTGATATGCTTCTCC 57.953 45.455 0.00 0.00 0.00 3.71
3293 3327 4.047822 CCTCACTCGTTGATATGCTTCTC 58.952 47.826 0.00 0.00 32.17 2.87
3294 3328 3.701542 TCCTCACTCGTTGATATGCTTCT 59.298 43.478 0.00 0.00 32.17 2.85
3295 3329 4.046938 TCCTCACTCGTTGATATGCTTC 57.953 45.455 0.00 0.00 32.17 3.86
3296 3330 3.701542 TCTCCTCACTCGTTGATATGCTT 59.298 43.478 0.00 0.00 32.17 3.91
3297 3331 3.291584 TCTCCTCACTCGTTGATATGCT 58.708 45.455 0.00 0.00 32.17 3.79
3298 3332 3.717400 TCTCCTCACTCGTTGATATGC 57.283 47.619 0.00 0.00 32.17 3.14
3299 3333 5.461407 CACATTCTCCTCACTCGTTGATATG 59.539 44.000 0.00 0.00 32.17 1.78
3300 3334 5.127845 ACACATTCTCCTCACTCGTTGATAT 59.872 40.000 0.00 0.00 32.17 1.63
3301 3335 4.462834 ACACATTCTCCTCACTCGTTGATA 59.537 41.667 0.00 0.00 32.17 2.15
3302 3336 3.259374 ACACATTCTCCTCACTCGTTGAT 59.741 43.478 0.00 0.00 32.17 2.57
3303 3337 2.628178 ACACATTCTCCTCACTCGTTGA 59.372 45.455 0.00 0.00 0.00 3.18
3304 3338 2.989840 GACACATTCTCCTCACTCGTTG 59.010 50.000 0.00 0.00 0.00 4.10
3305 3339 2.028930 GGACACATTCTCCTCACTCGTT 60.029 50.000 0.00 0.00 0.00 3.85
3306 3340 1.546476 GGACACATTCTCCTCACTCGT 59.454 52.381 0.00 0.00 0.00 4.18
3307 3341 1.546029 TGGACACATTCTCCTCACTCG 59.454 52.381 0.00 0.00 0.00 4.18
3308 3342 3.055530 ACATGGACACATTCTCCTCACTC 60.056 47.826 0.00 0.00 34.35 3.51
3309 3343 2.909006 ACATGGACACATTCTCCTCACT 59.091 45.455 0.00 0.00 34.35 3.41
3310 3344 3.340814 ACATGGACACATTCTCCTCAC 57.659 47.619 0.00 0.00 34.35 3.51
3311 3345 3.197766 GGTACATGGACACATTCTCCTCA 59.802 47.826 10.99 0.00 34.35 3.86
3312 3346 3.432326 GGGTACATGGACACATTCTCCTC 60.432 52.174 10.99 0.00 34.35 3.71
3313 3347 2.505819 GGGTACATGGACACATTCTCCT 59.494 50.000 10.99 0.00 34.35 3.69
3314 3348 2.505819 AGGGTACATGGACACATTCTCC 59.494 50.000 14.19 0.69 34.35 3.71
3315 3349 3.738281 CGAGGGTACATGGACACATTCTC 60.738 52.174 14.19 8.50 34.35 2.87
3316 3350 2.168521 CGAGGGTACATGGACACATTCT 59.831 50.000 14.19 0.00 34.35 2.40
3317 3351 2.093658 ACGAGGGTACATGGACACATTC 60.094 50.000 14.19 0.73 34.35 2.67
3318 3352 1.906574 ACGAGGGTACATGGACACATT 59.093 47.619 14.19 0.00 34.35 2.71
3319 3353 1.568504 ACGAGGGTACATGGACACAT 58.431 50.000 14.19 0.00 37.99 3.21
3320 3354 2.097036 CTACGAGGGTACATGGACACA 58.903 52.381 14.19 0.00 0.00 3.72
3321 3355 2.098770 GTCTACGAGGGTACATGGACAC 59.901 54.545 10.99 6.23 0.00 3.67
3322 3356 2.372264 GTCTACGAGGGTACATGGACA 58.628 52.381 10.99 0.00 0.00 4.02
3323 3357 1.680207 GGTCTACGAGGGTACATGGAC 59.320 57.143 0.00 0.00 0.00 4.02
3324 3358 2.062971 GGTCTACGAGGGTACATGGA 57.937 55.000 0.00 0.00 0.00 3.41
3343 3377 4.779523 CGTTACTAAATGCTTCCGTTTTCG 59.220 41.667 0.00 0.00 43.67 3.46
3344 3378 5.562623 CACGTTACTAAATGCTTCCGTTTTC 59.437 40.000 0.00 0.00 32.64 2.29
3345 3379 5.445845 CACGTTACTAAATGCTTCCGTTTT 58.554 37.500 0.00 0.00 32.64 2.43
3346 3380 4.083696 CCACGTTACTAAATGCTTCCGTTT 60.084 41.667 0.00 0.00 34.66 3.60
3347 3381 3.434299 CCACGTTACTAAATGCTTCCGTT 59.566 43.478 0.00 0.00 0.00 4.44
3348 3382 2.997986 CCACGTTACTAAATGCTTCCGT 59.002 45.455 0.00 0.00 0.00 4.69
3349 3383 2.997986 ACCACGTTACTAAATGCTTCCG 59.002 45.455 0.00 0.00 0.00 4.30
3350 3384 4.453136 TCAACCACGTTACTAAATGCTTCC 59.547 41.667 0.00 0.00 0.00 3.46
3351 3385 5.600908 TCAACCACGTTACTAAATGCTTC 57.399 39.130 0.00 0.00 0.00 3.86
3352 3386 5.472137 ACATCAACCACGTTACTAAATGCTT 59.528 36.000 0.00 0.00 0.00 3.91
3353 3387 5.001232 ACATCAACCACGTTACTAAATGCT 58.999 37.500 0.00 0.00 0.00 3.79
3354 3388 5.291293 ACATCAACCACGTTACTAAATGC 57.709 39.130 0.00 0.00 0.00 3.56
3355 3389 7.462331 CGACTACATCAACCACGTTACTAAATG 60.462 40.741 0.00 0.00 0.00 2.32
3356 3390 6.529125 CGACTACATCAACCACGTTACTAAAT 59.471 38.462 0.00 0.00 0.00 1.40
3357 3391 5.858049 CGACTACATCAACCACGTTACTAAA 59.142 40.000 0.00 0.00 0.00 1.85
3358 3392 5.181056 TCGACTACATCAACCACGTTACTAA 59.819 40.000 0.00 0.00 0.00 2.24
3359 3393 4.694982 TCGACTACATCAACCACGTTACTA 59.305 41.667 0.00 0.00 0.00 1.82
3360 3394 3.503363 TCGACTACATCAACCACGTTACT 59.497 43.478 0.00 0.00 0.00 2.24
3361 3395 3.825308 TCGACTACATCAACCACGTTAC 58.175 45.455 0.00 0.00 0.00 2.50
3362 3396 4.229096 GTTCGACTACATCAACCACGTTA 58.771 43.478 0.00 0.00 0.00 3.18
3363 3397 3.054878 GTTCGACTACATCAACCACGTT 58.945 45.455 0.00 0.00 0.00 3.99
3364 3398 2.669364 GTTCGACTACATCAACCACGT 58.331 47.619 0.00 0.00 0.00 4.49
3365 3399 1.647213 CGTTCGACTACATCAACCACG 59.353 52.381 0.00 0.00 0.00 4.94
3366 3400 1.990563 CCGTTCGACTACATCAACCAC 59.009 52.381 0.00 0.00 0.00 4.16
3367 3401 1.670674 GCCGTTCGACTACATCAACCA 60.671 52.381 0.00 0.00 0.00 3.67
3368 3402 0.997196 GCCGTTCGACTACATCAACC 59.003 55.000 0.00 0.00 0.00 3.77
3369 3403 1.992170 AGCCGTTCGACTACATCAAC 58.008 50.000 0.00 0.00 0.00 3.18
3370 3404 2.602878 GAAGCCGTTCGACTACATCAA 58.397 47.619 0.00 0.00 0.00 2.57
3371 3405 2.273370 GAAGCCGTTCGACTACATCA 57.727 50.000 0.00 0.00 0.00 3.07
3386 3420 1.429148 AATCGGTTGGATCGCGAAGC 61.429 55.000 15.24 8.54 43.00 3.86
3387 3421 0.577269 GAATCGGTTGGATCGCGAAG 59.423 55.000 15.24 0.00 33.02 3.79
3388 3422 0.108567 TGAATCGGTTGGATCGCGAA 60.109 50.000 15.24 0.00 33.02 4.70
3389 3423 0.108567 TTGAATCGGTTGGATCGCGA 60.109 50.000 13.09 13.09 33.02 5.87
3390 3424 0.301687 CTTGAATCGGTTGGATCGCG 59.698 55.000 0.00 0.00 33.02 5.87
3391 3425 1.369625 ACTTGAATCGGTTGGATCGC 58.630 50.000 0.00 0.00 33.02 4.58
3392 3426 2.864343 GGTACTTGAATCGGTTGGATCG 59.136 50.000 0.00 0.00 33.02 3.69
3393 3427 2.864343 CGGTACTTGAATCGGTTGGATC 59.136 50.000 0.00 0.00 33.02 3.36
3394 3428 2.498481 TCGGTACTTGAATCGGTTGGAT 59.502 45.455 0.00 0.00 36.78 3.41
3395 3429 1.894466 TCGGTACTTGAATCGGTTGGA 59.106 47.619 0.00 0.00 0.00 3.53
3396 3430 2.373540 TCGGTACTTGAATCGGTTGG 57.626 50.000 0.00 0.00 0.00 3.77
3397 3431 2.091588 CGTTCGGTACTTGAATCGGTTG 59.908 50.000 0.00 0.00 0.00 3.77
3398 3432 2.288395 ACGTTCGGTACTTGAATCGGTT 60.288 45.455 17.63 0.00 0.00 4.44
3399 3433 1.270550 ACGTTCGGTACTTGAATCGGT 59.729 47.619 17.63 9.96 0.00 4.69
3400 3434 1.986698 ACGTTCGGTACTTGAATCGG 58.013 50.000 17.63 9.57 0.00 4.18
3410 3444 0.523072 GAGGTGCAGTACGTTCGGTA 59.477 55.000 0.00 0.00 0.00 4.02
3411 3445 1.288127 GAGGTGCAGTACGTTCGGT 59.712 57.895 0.00 0.00 0.00 4.69
3412 3446 1.445582 GGAGGTGCAGTACGTTCGG 60.446 63.158 0.00 0.00 0.00 4.30
3413 3447 1.800315 CGGAGGTGCAGTACGTTCG 60.800 63.158 0.00 0.00 39.50 3.95
3414 3448 2.092882 GCGGAGGTGCAGTACGTTC 61.093 63.158 0.00 0.00 34.15 3.95
3415 3449 2.048503 GCGGAGGTGCAGTACGTT 60.049 61.111 0.00 0.00 34.15 3.99
3416 3450 4.415332 CGCGGAGGTGCAGTACGT 62.415 66.667 0.00 0.00 34.15 3.57
3417 3451 3.909258 AACGCGGAGGTGCAGTACG 62.909 63.158 12.47 0.00 34.15 3.67
3418 3452 2.048503 AACGCGGAGGTGCAGTAC 60.049 61.111 12.47 0.00 34.15 2.73
3419 3453 2.260434 GAACGCGGAGGTGCAGTA 59.740 61.111 12.47 0.00 34.15 2.74
3420 3454 3.865929 CTGAACGCGGAGGTGCAGT 62.866 63.158 12.47 0.00 38.54 4.40
3421 3455 3.114616 CTGAACGCGGAGGTGCAG 61.115 66.667 12.47 0.00 37.24 4.41
3424 3458 3.414700 GTGCTGAACGCGGAGGTG 61.415 66.667 12.47 0.00 43.27 4.00
3425 3459 3.923864 TGTGCTGAACGCGGAGGT 61.924 61.111 12.47 0.00 43.27 3.85
3426 3460 3.414700 GTGTGCTGAACGCGGAGG 61.415 66.667 12.47 0.00 43.27 4.30
3431 3465 1.083401 CTGAACGTGTGCTGAACGC 60.083 57.895 0.00 0.00 44.80 4.84
3432 3466 0.650512 AACTGAACGTGTGCTGAACG 59.349 50.000 0.00 5.11 46.32 3.95
3433 3467 1.332028 CGAACTGAACGTGTGCTGAAC 60.332 52.381 0.00 0.00 0.00 3.18
3434 3468 0.927537 CGAACTGAACGTGTGCTGAA 59.072 50.000 0.00 0.00 0.00 3.02
3435 3469 0.101579 TCGAACTGAACGTGTGCTGA 59.898 50.000 0.00 0.00 0.00 4.26
3436 3470 1.136529 CATCGAACTGAACGTGTGCTG 60.137 52.381 0.00 0.00 0.00 4.41
3437 3471 1.139989 CATCGAACTGAACGTGTGCT 58.860 50.000 0.00 0.00 0.00 4.40
3438 3472 1.136611 GTCATCGAACTGAACGTGTGC 60.137 52.381 0.00 0.00 0.00 4.57
3439 3473 2.124122 TGTCATCGAACTGAACGTGTG 58.876 47.619 0.00 0.00 0.00 3.82
3440 3474 2.502213 TGTCATCGAACTGAACGTGT 57.498 45.000 0.00 0.00 0.00 4.49
3441 3475 2.472886 GCATGTCATCGAACTGAACGTG 60.473 50.000 0.00 0.00 0.00 4.49
3442 3476 1.726791 GCATGTCATCGAACTGAACGT 59.273 47.619 0.00 0.00 0.00 3.99
3443 3477 1.061131 GGCATGTCATCGAACTGAACG 59.939 52.381 0.00 0.00 0.00 3.95
3444 3478 2.349886 GAGGCATGTCATCGAACTGAAC 59.650 50.000 0.00 0.00 0.00 3.18
3445 3479 2.621338 GAGGCATGTCATCGAACTGAA 58.379 47.619 0.00 0.00 0.00 3.02
3446 3480 2.299993 GAGGCATGTCATCGAACTGA 57.700 50.000 0.00 0.00 0.00 3.41
3453 3487 3.058450 CAAGAGATCGAGGCATGTCATC 58.942 50.000 0.00 0.00 0.00 2.92
3454 3488 2.697229 TCAAGAGATCGAGGCATGTCAT 59.303 45.455 0.00 0.00 0.00 3.06
3455 3489 2.102578 TCAAGAGATCGAGGCATGTCA 58.897 47.619 0.00 0.00 0.00 3.58
3456 3490 2.879002 TCAAGAGATCGAGGCATGTC 57.121 50.000 0.00 0.00 0.00 3.06
3457 3491 3.383620 GATCAAGAGATCGAGGCATGT 57.616 47.619 0.00 0.00 41.12 3.21
3467 3501 3.131933 CGTCCTCAACTGGATCAAGAGAT 59.868 47.826 3.42 0.00 38.52 2.75
3468 3502 2.493675 CGTCCTCAACTGGATCAAGAGA 59.506 50.000 3.42 0.53 38.52 3.10
3469 3503 2.493675 TCGTCCTCAACTGGATCAAGAG 59.506 50.000 3.42 0.00 38.52 2.85
3470 3504 2.493675 CTCGTCCTCAACTGGATCAAGA 59.506 50.000 3.42 0.00 38.52 3.02
3471 3505 2.417924 CCTCGTCCTCAACTGGATCAAG 60.418 54.545 0.00 0.00 38.52 3.02
3472 3506 1.550524 CCTCGTCCTCAACTGGATCAA 59.449 52.381 0.00 0.00 38.52 2.57
3473 3507 1.186200 CCTCGTCCTCAACTGGATCA 58.814 55.000 0.00 0.00 38.52 2.92
3474 3508 0.461961 CCCTCGTCCTCAACTGGATC 59.538 60.000 0.00 0.00 38.52 3.36
3475 3509 0.041238 TCCCTCGTCCTCAACTGGAT 59.959 55.000 0.00 0.00 38.52 3.41
3476 3510 0.612174 CTCCCTCGTCCTCAACTGGA 60.612 60.000 0.00 0.00 0.00 3.86
3477 3511 0.612174 TCTCCCTCGTCCTCAACTGG 60.612 60.000 0.00 0.00 0.00 4.00
3478 3512 0.814457 CTCTCCCTCGTCCTCAACTG 59.186 60.000 0.00 0.00 0.00 3.16
3479 3513 0.406361 ACTCTCCCTCGTCCTCAACT 59.594 55.000 0.00 0.00 0.00 3.16
3480 3514 1.202817 GAACTCTCCCTCGTCCTCAAC 59.797 57.143 0.00 0.00 0.00 3.18
3481 3515 1.546961 GAACTCTCCCTCGTCCTCAA 58.453 55.000 0.00 0.00 0.00 3.02
3482 3516 0.323542 GGAACTCTCCCTCGTCCTCA 60.324 60.000 0.00 0.00 35.42 3.86
3483 3517 1.378124 CGGAACTCTCCCTCGTCCTC 61.378 65.000 0.00 0.00 38.71 3.71
3484 3518 1.378778 CGGAACTCTCCCTCGTCCT 60.379 63.158 0.00 0.00 38.71 3.85
3485 3519 1.655885 GACGGAACTCTCCCTCGTCC 61.656 65.000 0.00 0.00 42.72 4.79
3486 3520 0.959372 TGACGGAACTCTCCCTCGTC 60.959 60.000 7.15 7.15 46.86 4.20
3487 3521 0.961358 CTGACGGAACTCTCCCTCGT 60.961 60.000 0.00 0.00 38.71 4.18
3488 3522 1.803943 CTGACGGAACTCTCCCTCG 59.196 63.158 0.00 0.00 38.71 4.63
3489 3523 1.251527 TGCTGACGGAACTCTCCCTC 61.252 60.000 0.00 0.00 38.71 4.30
3490 3524 1.228894 TGCTGACGGAACTCTCCCT 60.229 57.895 0.00 0.00 38.71 4.20
3491 3525 1.079750 GTGCTGACGGAACTCTCCC 60.080 63.158 0.00 0.00 38.71 4.30
3492 3526 1.444553 CGTGCTGACGGAACTCTCC 60.445 63.158 0.00 0.00 42.18 3.71
3493 3527 0.729816 GTCGTGCTGACGGAACTCTC 60.730 60.000 0.00 0.00 46.11 3.20
3494 3528 1.286260 GTCGTGCTGACGGAACTCT 59.714 57.895 0.00 0.00 46.11 3.24
3495 3529 3.843985 GTCGTGCTGACGGAACTC 58.156 61.111 0.00 0.00 46.11 3.01
3518 3552 4.704833 TCCTGCCTTCGCCACTGC 62.705 66.667 0.00 0.00 0.00 4.40
3519 3553 0.107703 TATTCCTGCCTTCGCCACTG 60.108 55.000 0.00 0.00 0.00 3.66
3520 3554 0.618458 TTATTCCTGCCTTCGCCACT 59.382 50.000 0.00 0.00 0.00 4.00
3521 3555 1.680338 ATTATTCCTGCCTTCGCCAC 58.320 50.000 0.00 0.00 0.00 5.01
3522 3556 2.435372 AATTATTCCTGCCTTCGCCA 57.565 45.000 0.00 0.00 0.00 5.69
3523 3557 5.123979 CCTATAAATTATTCCTGCCTTCGCC 59.876 44.000 0.00 0.00 0.00 5.54
3524 3558 5.705905 ACCTATAAATTATTCCTGCCTTCGC 59.294 40.000 0.00 0.00 0.00 4.70
3525 3559 6.710744 ACACCTATAAATTATTCCTGCCTTCG 59.289 38.462 0.00 0.00 0.00 3.79
3526 3560 7.040409 CCACACCTATAAATTATTCCTGCCTTC 60.040 40.741 0.00 0.00 0.00 3.46
3527 3561 6.777580 CCACACCTATAAATTATTCCTGCCTT 59.222 38.462 0.00 0.00 0.00 4.35
3528 3562 6.306987 CCACACCTATAAATTATTCCTGCCT 58.693 40.000 0.00 0.00 0.00 4.75
3529 3563 5.048013 GCCACACCTATAAATTATTCCTGCC 60.048 44.000 0.00 0.00 0.00 4.85
3530 3564 5.334879 CGCCACACCTATAAATTATTCCTGC 60.335 44.000 0.00 0.00 0.00 4.85
3531 3565 5.181245 CCGCCACACCTATAAATTATTCCTG 59.819 44.000 0.00 0.00 0.00 3.86
3532 3566 5.072600 TCCGCCACACCTATAAATTATTCCT 59.927 40.000 0.00 0.00 0.00 3.36
3533 3567 5.310451 TCCGCCACACCTATAAATTATTCC 58.690 41.667 0.00 0.00 0.00 3.01
3534 3568 7.448748 AATCCGCCACACCTATAAATTATTC 57.551 36.000 0.00 0.00 0.00 1.75
3535 3569 7.504238 TGAAATCCGCCACACCTATAAATTATT 59.496 33.333 0.00 0.00 0.00 1.40
3536 3570 7.001674 TGAAATCCGCCACACCTATAAATTAT 58.998 34.615 0.00 0.00 0.00 1.28
3537 3571 6.261381 GTGAAATCCGCCACACCTATAAATTA 59.739 38.462 0.00 0.00 33.72 1.40
3538 3572 5.067283 GTGAAATCCGCCACACCTATAAATT 59.933 40.000 0.00 0.00 33.72 1.82
3539 3573 4.578928 GTGAAATCCGCCACACCTATAAAT 59.421 41.667 0.00 0.00 33.72 1.40
3540 3574 3.942748 GTGAAATCCGCCACACCTATAAA 59.057 43.478 0.00 0.00 33.72 1.40
3541 3575 3.537580 GTGAAATCCGCCACACCTATAA 58.462 45.455 0.00 0.00 33.72 0.98
3542 3576 2.482316 CGTGAAATCCGCCACACCTATA 60.482 50.000 0.00 0.00 33.13 1.31
3543 3577 1.742411 CGTGAAATCCGCCACACCTAT 60.742 52.381 0.00 0.00 33.13 2.57
3544 3578 0.390603 CGTGAAATCCGCCACACCTA 60.391 55.000 0.00 0.00 33.13 3.08
3545 3579 1.671054 CGTGAAATCCGCCACACCT 60.671 57.895 0.00 0.00 33.13 4.00
3546 3580 1.635663 CTCGTGAAATCCGCCACACC 61.636 60.000 0.00 0.00 33.13 4.16
3547 3581 1.635663 CCTCGTGAAATCCGCCACAC 61.636 60.000 0.00 0.00 33.13 3.82
3548 3582 1.375396 CCTCGTGAAATCCGCCACA 60.375 57.895 0.00 0.00 33.13 4.17
3549 3583 0.108520 TACCTCGTGAAATCCGCCAC 60.109 55.000 0.00 0.00 0.00 5.01
3550 3584 0.609151 TTACCTCGTGAAATCCGCCA 59.391 50.000 0.00 0.00 0.00 5.69
3551 3585 1.664151 CTTTACCTCGTGAAATCCGCC 59.336 52.381 0.00 0.00 0.00 6.13
3552 3586 2.347755 GTCTTTACCTCGTGAAATCCGC 59.652 50.000 0.00 0.00 0.00 5.54
3553 3587 2.928116 GGTCTTTACCTCGTGAAATCCG 59.072 50.000 0.00 0.00 43.08 4.18
3554 3588 3.934068 TGGTCTTTACCTCGTGAAATCC 58.066 45.455 0.00 0.00 46.91 3.01
3555 3589 5.411669 ACATTGGTCTTTACCTCGTGAAATC 59.588 40.000 0.00 0.00 46.91 2.17
3556 3590 5.313712 ACATTGGTCTTTACCTCGTGAAAT 58.686 37.500 0.00 0.00 46.91 2.17
3557 3591 4.710324 ACATTGGTCTTTACCTCGTGAAA 58.290 39.130 0.00 0.00 46.91 2.69
3558 3592 4.345859 ACATTGGTCTTTACCTCGTGAA 57.654 40.909 0.00 0.00 46.91 3.18
3559 3593 4.281435 TGTACATTGGTCTTTACCTCGTGA 59.719 41.667 0.00 0.00 46.91 4.35
3560 3594 4.562082 TGTACATTGGTCTTTACCTCGTG 58.438 43.478 0.00 0.00 46.91 4.35
3561 3595 4.877378 TGTACATTGGTCTTTACCTCGT 57.123 40.909 0.00 0.00 46.91 4.18
3562 3596 9.537192 TTATATTGTACATTGGTCTTTACCTCG 57.463 33.333 0.00 0.00 46.91 4.63
3570 3604 9.273016 GCACATAGTTATATTGTACATTGGTCT 57.727 33.333 0.00 0.00 0.00 3.85
3571 3605 8.504005 GGCACATAGTTATATTGTACATTGGTC 58.496 37.037 0.00 0.00 0.00 4.02
3572 3606 7.172532 CGGCACATAGTTATATTGTACATTGGT 59.827 37.037 0.00 0.00 0.00 3.67
3573 3607 7.518161 CGGCACATAGTTATATTGTACATTGG 58.482 38.462 0.00 0.00 0.00 3.16
3574 3608 7.015289 GCGGCACATAGTTATATTGTACATTG 58.985 38.462 0.00 0.00 0.00 2.82
3575 3609 6.934645 AGCGGCACATAGTTATATTGTACATT 59.065 34.615 1.45 0.00 0.00 2.71
3576 3610 6.464222 AGCGGCACATAGTTATATTGTACAT 58.536 36.000 1.45 0.00 0.00 2.29
3577 3611 5.849510 AGCGGCACATAGTTATATTGTACA 58.150 37.500 1.45 0.00 0.00 2.90
3578 3612 5.060569 CGAGCGGCACATAGTTATATTGTAC 59.939 44.000 1.45 0.00 0.00 2.90
3579 3613 5.158494 CGAGCGGCACATAGTTATATTGTA 58.842 41.667 1.45 0.00 0.00 2.41
3580 3614 3.987868 CGAGCGGCACATAGTTATATTGT 59.012 43.478 1.45 0.00 0.00 2.71
3581 3615 3.987868 ACGAGCGGCACATAGTTATATTG 59.012 43.478 1.45 0.00 0.00 1.90
3582 3616 3.987868 CACGAGCGGCACATAGTTATATT 59.012 43.478 1.45 0.00 0.00 1.28
3583 3617 3.575630 CACGAGCGGCACATAGTTATAT 58.424 45.455 1.45 0.00 0.00 0.86
3584 3618 2.860971 GCACGAGCGGCACATAGTTATA 60.861 50.000 1.45 0.00 0.00 0.98
3585 3619 1.852942 CACGAGCGGCACATAGTTAT 58.147 50.000 1.45 0.00 0.00 1.89
3586 3620 0.804544 GCACGAGCGGCACATAGTTA 60.805 55.000 1.45 0.00 0.00 2.24
3587 3621 2.100631 GCACGAGCGGCACATAGTT 61.101 57.895 1.45 0.00 0.00 2.24
3588 3622 2.509336 GCACGAGCGGCACATAGT 60.509 61.111 1.45 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.