Multiple sequence alignment - TraesCS2A01G341500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G341500 chr2A 100.000 6242 0 0 1 6242 578165871 578159630 0.000000e+00 11527.0
1 TraesCS2A01G341500 chr2A 86.301 146 16 4 2243 2385 32151828 32151684 8.380000e-34 156.0
2 TraesCS2A01G341500 chr2A 86.842 114 11 2 2502 2611 81788728 81788841 2.360000e-24 124.0
3 TraesCS2A01G341500 chr2A 97.500 40 1 0 2500 2539 56879433 56879394 1.120000e-07 69.4
4 TraesCS2A01G341500 chr2D 93.734 1596 73 15 560 2137 409605054 409603468 0.000000e+00 2368.0
5 TraesCS2A01G341500 chr2D 94.854 1302 36 4 4407 5704 409601165 409599891 0.000000e+00 2004.0
6 TraesCS2A01G341500 chr2D 94.274 1240 56 9 2410 3634 409603456 409602217 0.000000e+00 1882.0
7 TraesCS2A01G341500 chr2D 98.322 715 12 0 3629 4343 409601893 409601179 0.000000e+00 1254.0
8 TraesCS2A01G341500 chr2D 93.209 589 16 12 5661 6236 409599884 409599307 0.000000e+00 845.0
9 TraesCS2A01G341500 chr2D 85.882 425 49 6 1 420 409605584 409605166 5.740000e-120 442.0
10 TraesCS2A01G341500 chr2D 85.311 177 16 5 2243 2410 30259169 30258994 2.310000e-39 174.0
11 TraesCS2A01G341500 chr2D 96.970 33 1 0 2142 2174 409603475 409603443 8.740000e-04 56.5
12 TraesCS2A01G341500 chr2B 92.562 1452 63 23 557 1975 484611013 484609574 0.000000e+00 2041.0
13 TraesCS2A01G341500 chr2B 93.252 1319 62 14 4481 5779 484606330 484605019 0.000000e+00 1917.0
14 TraesCS2A01G341500 chr2B 94.650 1028 48 2 2754 3781 484607942 484606922 0.000000e+00 1587.0
15 TraesCS2A01G341500 chr2B 88.350 927 58 18 5332 6236 484605022 484604124 0.000000e+00 1068.0
16 TraesCS2A01G341500 chr2B 96.903 549 16 1 3795 4343 484606938 484606391 0.000000e+00 918.0
17 TraesCS2A01G341500 chr2B 94.737 228 10 1 2410 2637 484608257 484608032 2.770000e-93 353.0
18 TraesCS2A01G341500 chr2B 98.230 113 2 0 2055 2167 484608363 484608251 1.370000e-46 198.0
19 TraesCS2A01G341500 chr2B 83.108 148 21 4 2241 2385 536624934 536624788 1.410000e-26 132.0
20 TraesCS2A01G341500 chr2B 100.000 36 0 0 2634 2669 484608013 484607978 4.040000e-07 67.6
21 TraesCS2A01G341500 chr4A 88.435 147 13 4 2243 2385 639181932 639182078 2.310000e-39 174.0
22 TraesCS2A01G341500 chr4A 89.286 84 9 0 2410 2493 543253623 543253540 8.560000e-19 106.0
23 TraesCS2A01G341500 chr4A 87.097 93 11 1 416 507 712328010 712328102 3.080000e-18 104.0
24 TraesCS2A01G341500 chr4A 86.022 93 12 1 416 507 712320351 712320443 1.430000e-16 99.0
25 TraesCS2A01G341500 chr7A 84.746 177 17 5 2240 2408 374574314 374574488 1.080000e-37 169.0
26 TraesCS2A01G341500 chr7A 90.789 76 7 0 2410 2485 105225958 105225883 1.110000e-17 102.0
27 TraesCS2A01G341500 chr7D 83.889 180 18 6 2240 2411 330779830 330779654 1.800000e-35 161.0
28 TraesCS2A01G341500 chr7D 97.297 74 1 1 4342 4415 150756127 150756199 2.360000e-24 124.0
29 TraesCS2A01G341500 chr7D 92.537 67 5 0 2544 2610 478909876 478909810 5.150000e-16 97.1
30 TraesCS2A01G341500 chr7D 85.227 88 8 2 419 506 4725847 4725929 1.110000e-12 86.1
31 TraesCS2A01G341500 chr1B 98.837 86 1 0 6120 6205 579940532 579940617 3.010000e-33 154.0
32 TraesCS2A01G341500 chr1A 98.837 86 1 0 6120 6205 522968351 522968436 3.010000e-33 154.0
33 TraesCS2A01G341500 chr5B 98.824 85 1 0 6126 6210 286699847 286699931 1.080000e-32 152.0
34 TraesCS2A01G341500 chr5B 83.673 147 21 3 2241 2385 398655394 398655539 1.090000e-27 135.0
35 TraesCS2A01G341500 chr5B 87.209 86 7 4 2534 2616 596648753 596648837 1.850000e-15 95.3
36 TraesCS2A01G341500 chr5A 97.701 87 1 1 6120 6205 338577771 338577857 1.400000e-31 148.0
37 TraesCS2A01G341500 chr5A 97.260 73 2 0 4342 4414 395877466 395877394 2.360000e-24 124.0
38 TraesCS2A01G341500 chr5A 82.171 129 18 2 2491 2614 620406316 620406444 8.560000e-19 106.0
39 TraesCS2A01G341500 chr3D 97.701 87 1 1 6123 6208 400786688 400786602 1.400000e-31 148.0
40 TraesCS2A01G341500 chr3D 87.778 90 11 0 419 508 34357620 34357531 8.560000e-19 106.0
41 TraesCS2A01G341500 chr3D 90.909 77 7 0 2535 2611 69502031 69502107 3.080000e-18 104.0
42 TraesCS2A01G341500 chr5D 90.179 112 10 1 6100 6210 255560861 255560972 1.810000e-30 145.0
43 TraesCS2A01G341500 chr5D 100.000 70 0 0 4341 4410 25040799 25040730 5.080000e-26 130.0
44 TraesCS2A01G341500 chr5D 98.592 71 1 0 4342 4412 539891668 539891598 6.570000e-25 126.0
45 TraesCS2A01G341500 chr5D 91.011 89 7 1 419 506 275148978 275149066 1.100000e-22 119.0
46 TraesCS2A01G341500 chr5D 91.250 80 6 1 2534 2612 278311297 278311376 2.380000e-19 108.0
47 TraesCS2A01G341500 chrUn 98.734 79 1 0 6123 6201 103501141 103501063 2.350000e-29 141.0
48 TraesCS2A01G341500 chrUn 92.000 50 2 2 6 54 3854571 3854523 1.120000e-07 69.4
49 TraesCS2A01G341500 chr7B 82.759 145 22 3 2243 2385 647736772 647736629 6.570000e-25 126.0
50 TraesCS2A01G341500 chr7B 98.592 71 1 0 4342 4412 694126790 694126720 6.570000e-25 126.0
51 TraesCS2A01G341500 chr6D 97.260 73 2 0 4342 4414 109267342 109267414 2.360000e-24 124.0
52 TraesCS2A01G341500 chr1D 82.069 145 23 3 2243 2385 19350561 19350418 3.060000e-23 121.0
53 TraesCS2A01G341500 chr1D 93.827 81 4 1 4342 4422 57314269 57314190 3.060000e-23 121.0
54 TraesCS2A01G341500 chr1D 84.884 86 12 1 418 503 318113547 318113631 1.110000e-12 86.1
55 TraesCS2A01G341500 chr6A 92.771 83 4 2 4342 4423 48526607 48526526 1.100000e-22 119.0
56 TraesCS2A01G341500 chr6A 93.590 78 5 0 4342 4419 45754221 45754144 3.950000e-22 117.0
57 TraesCS2A01G341500 chr6A 100.000 38 0 0 2048 2085 523951688 523951651 3.120000e-08 71.3
58 TraesCS2A01G341500 chr3A 89.773 88 9 0 417 504 691348307 691348220 5.110000e-21 113.0
59 TraesCS2A01G341500 chr3A 97.500 40 1 0 2501 2540 472802311 472802350 1.120000e-07 69.4
60 TraesCS2A01G341500 chr4B 86.747 83 11 0 421 503 4551970 4552052 6.660000e-15 93.5
61 TraesCS2A01G341500 chr6B 86.250 80 10 1 2534 2612 239309795 239309716 1.110000e-12 86.1
62 TraesCS2A01G341500 chr3B 82.979 94 15 1 411 503 547120688 547120781 4.010000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G341500 chr2A 578159630 578165871 6241 True 11527.0 11527 100.000000 1 6242 1 chr2A.!!$R3 6241
1 TraesCS2A01G341500 chr2D 409599307 409605584 6277 True 1264.5 2368 93.892143 1 6236 7 chr2D.!!$R2 6235
2 TraesCS2A01G341500 chr2B 484604124 484611013 6889 True 1018.7 2041 94.835500 557 6236 8 chr2B.!!$R2 5679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 738 0.178950 TCACCTGGTCACTCTGCTCT 60.179 55.000 0.00 0.00 0.00 4.09 F
676 739 0.246086 CACCTGGTCACTCTGCTCTC 59.754 60.000 0.00 0.00 0.00 3.20 F
679 742 0.962855 CTGGTCACTCTGCTCTCGGA 60.963 60.000 0.00 0.00 0.00 4.55 F
1733 1801 1.068885 CCAAATTTGTAGCGTTGCCGA 60.069 47.619 16.73 0.00 35.63 5.54 F
2193 3414 0.110486 TCCTGTTGGCCTTCTGTTCC 59.890 55.000 3.32 0.00 0.00 3.62 F
2194 3415 0.111253 CCTGTTGGCCTTCTGTTCCT 59.889 55.000 3.32 0.00 0.00 3.36 F
2254 3475 0.181114 TTGAGTTGTGCTGCTCAGGT 59.819 50.000 4.48 0.00 41.93 4.00 F
2315 3536 0.250727 TGGGTTTACTGGCAGTGCTC 60.251 55.000 29.65 18.75 0.00 4.26 F
2326 3547 0.308993 GCAGTGCTCGAACTTGCTTT 59.691 50.000 8.18 0.00 0.00 3.51 F
2395 3616 0.532115 ATTTGCAATCGGTTCAGCCC 59.468 50.000 0.00 0.00 0.00 5.19 F
3313 4558 0.539669 CCCCCACTTGGTTGGAGAAC 60.540 60.000 0.00 0.00 39.24 3.01 F
4369 5943 1.004560 CCGTATGCATCGCCCAGAT 60.005 57.895 0.19 0.00 41.01 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 1971 0.032130 CCAGTACGCGGCATGACTAT 59.968 55.000 12.47 0.00 0.00 2.12 R
2174 3395 0.110486 GGAACAGAAGGCCAACAGGA 59.890 55.000 5.01 0.00 0.00 3.86 R
2175 3396 0.111253 AGGAACAGAAGGCCAACAGG 59.889 55.000 5.01 0.00 0.00 4.00 R
3086 4331 3.467803 ACACTTGGCAAGAGTTCAGTAC 58.532 45.455 32.50 0.00 0.00 2.73 R
3264 4509 5.699001 ACGAGATGTTTGTAAGCATGTTACA 59.301 36.000 13.46 13.46 33.51 2.41 R
3313 4558 6.365839 GTGTGTTTGTGATATTGAGTGAGTG 58.634 40.000 0.00 0.00 0.00 3.51 R
3558 4803 6.436843 AAATAATACCAAGCGGAGAAACAG 57.563 37.500 0.00 0.00 35.59 3.16 R
4307 5881 4.263331 CCTGGCTACTAACTCCAAAAGGAA 60.263 45.833 0.00 0.00 0.00 3.36 R
4343 5917 1.577468 CGATGCATACGGCCACTTTA 58.423 50.000 2.24 0.00 43.89 1.85 R
4378 5952 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73 R
4421 5995 0.725784 GCAAGCACGTCAAATGGTCG 60.726 55.000 0.00 0.00 0.00 4.79 R
5895 7931 0.323360 CACACGACCCCCATTTCCAT 60.323 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 7.225341 GGAATATTTGGATTCAAAGGAATGTGC 59.775 37.037 5.22 0.00 44.87 4.57
58 59 4.524316 TTGGATTCAAAGGAATGTGCAG 57.476 40.909 0.00 0.00 43.69 4.41
83 84 4.374689 TTTAGAGCCATACAACCAACCA 57.625 40.909 0.00 0.00 0.00 3.67
100 101 3.567478 ACCATTCAGGCTTGGAGATAC 57.433 47.619 10.63 0.00 43.14 2.24
114 115 3.840666 TGGAGATACTTCCTCAAAGCAGT 59.159 43.478 0.00 0.00 38.67 4.40
116 117 4.081420 GGAGATACTTCCTCAAAGCAGTCA 60.081 45.833 0.00 0.00 38.67 3.41
119 120 3.064900 ACTTCCTCAAAGCAGTCATCC 57.935 47.619 0.00 0.00 38.67 3.51
131 132 2.366533 CAGTCATCCAGCTGCTTCAAT 58.633 47.619 8.66 0.00 0.00 2.57
145 146 8.932791 CAGCTGCTTCAATTCAAAATAAAAGAT 58.067 29.630 0.00 0.00 0.00 2.40
155 156 9.723601 AATTCAAAATAAAAGATAAGCCTGCAA 57.276 25.926 0.00 0.00 0.00 4.08
168 169 1.408702 GCCTGCAAACTCTTTTCACCA 59.591 47.619 0.00 0.00 0.00 4.17
175 176 4.687483 GCAAACTCTTTTCACCAATGGATG 59.313 41.667 6.16 0.44 0.00 3.51
176 177 5.509501 GCAAACTCTTTTCACCAATGGATGA 60.510 40.000 6.16 3.19 0.00 2.92
184 185 7.835682 TCTTTTCACCAATGGATGATCAATACT 59.164 33.333 6.16 0.00 0.00 2.12
212 213 8.593945 TGATTATAAGCATGTTTTCCTTTCCT 57.406 30.769 0.00 0.00 0.00 3.36
213 214 9.693739 TGATTATAAGCATGTTTTCCTTTCCTA 57.306 29.630 0.00 0.00 0.00 2.94
215 216 9.920946 ATTATAAGCATGTTTTCCTTTCCTAGA 57.079 29.630 0.00 0.00 0.00 2.43
216 217 7.872113 ATAAGCATGTTTTCCTTTCCTAGAG 57.128 36.000 0.00 0.00 0.00 2.43
217 218 4.013050 AGCATGTTTTCCTTTCCTAGAGC 58.987 43.478 0.00 0.00 0.00 4.09
241 242 7.038658 AGCAGGCATTGGTTAACCTTTATTTTA 60.039 33.333 24.78 0.00 32.47 1.52
287 289 6.707440 TTTGCATTCCTCTCACTTTGTAAA 57.293 33.333 0.00 0.00 0.00 2.01
342 344 2.634600 ACAGTTGTTCTACGGTTTGCA 58.365 42.857 0.00 0.00 0.00 4.08
346 348 2.335316 TGTTCTACGGTTTGCAGGTT 57.665 45.000 0.00 0.00 0.00 3.50
358 360 5.637387 CGGTTTGCAGGTTAAAAATTATGCT 59.363 36.000 0.00 0.00 34.80 3.79
367 369 9.434420 CAGGTTAAAAATTATGCTTTCCAATCA 57.566 29.630 0.00 0.00 0.00 2.57
380 382 7.220030 TGCTTTCCAATCATCTATCTTACTCC 58.780 38.462 0.00 0.00 0.00 3.85
382 384 7.936301 GCTTTCCAATCATCTATCTTACTCCTT 59.064 37.037 0.00 0.00 0.00 3.36
384 386 7.220741 TCCAATCATCTATCTTACTCCTTCG 57.779 40.000 0.00 0.00 0.00 3.79
385 387 6.778069 TCCAATCATCTATCTTACTCCTTCGT 59.222 38.462 0.00 0.00 0.00 3.85
386 388 7.287927 TCCAATCATCTATCTTACTCCTTCGTT 59.712 37.037 0.00 0.00 0.00 3.85
387 389 7.596995 CCAATCATCTATCTTACTCCTTCGTTC 59.403 40.741 0.00 0.00 0.00 3.95
388 390 8.356657 CAATCATCTATCTTACTCCTTCGTTCT 58.643 37.037 0.00 0.00 0.00 3.01
389 391 7.883391 TCATCTATCTTACTCCTTCGTTCTT 57.117 36.000 0.00 0.00 0.00 2.52
390 392 8.975663 TCATCTATCTTACTCCTTCGTTCTTA 57.024 34.615 0.00 0.00 0.00 2.10
420 426 5.157067 GCTCTTGCATGTTTTCCTTTCTAC 58.843 41.667 0.00 0.00 39.41 2.59
422 428 6.560253 TCTTGCATGTTTTCCTTTCTACTC 57.440 37.500 0.00 0.00 0.00 2.59
424 430 4.079253 TGCATGTTTTCCTTTCTACTCCC 58.921 43.478 0.00 0.00 0.00 4.30
425 431 4.202567 TGCATGTTTTCCTTTCTACTCCCT 60.203 41.667 0.00 0.00 0.00 4.20
426 432 4.396478 GCATGTTTTCCTTTCTACTCCCTC 59.604 45.833 0.00 0.00 0.00 4.30
427 433 4.635699 TGTTTTCCTTTCTACTCCCTCC 57.364 45.455 0.00 0.00 0.00 4.30
428 434 3.007614 TGTTTTCCTTTCTACTCCCTCCG 59.992 47.826 0.00 0.00 0.00 4.63
429 435 2.617840 TTCCTTTCTACTCCCTCCGT 57.382 50.000 0.00 0.00 0.00 4.69
430 436 2.140839 TCCTTTCTACTCCCTCCGTC 57.859 55.000 0.00 0.00 0.00 4.79
431 437 1.112950 CCTTTCTACTCCCTCCGTCC 58.887 60.000 0.00 0.00 0.00 4.79
432 438 1.342175 CCTTTCTACTCCCTCCGTCCT 60.342 57.143 0.00 0.00 0.00 3.85
433 439 2.091994 CCTTTCTACTCCCTCCGTCCTA 60.092 54.545 0.00 0.00 0.00 2.94
434 440 3.436761 CCTTTCTACTCCCTCCGTCCTAT 60.437 52.174 0.00 0.00 0.00 2.57
435 441 4.202545 CCTTTCTACTCCCTCCGTCCTATA 60.203 50.000 0.00 0.00 0.00 1.31
436 442 5.383476 CTTTCTACTCCCTCCGTCCTATAA 58.617 45.833 0.00 0.00 0.00 0.98
437 443 5.595814 TTCTACTCCCTCCGTCCTATAAT 57.404 43.478 0.00 0.00 0.00 1.28
438 444 6.708885 TTCTACTCCCTCCGTCCTATAATA 57.291 41.667 0.00 0.00 0.00 0.98
439 445 6.905067 TCTACTCCCTCCGTCCTATAATAT 57.095 41.667 0.00 0.00 0.00 1.28
440 446 8.397951 TTCTACTCCCTCCGTCCTATAATATA 57.602 38.462 0.00 0.00 0.00 0.86
441 447 8.397951 TCTACTCCCTCCGTCCTATAATATAA 57.602 38.462 0.00 0.00 0.00 0.98
442 448 9.011860 TCTACTCCCTCCGTCCTATAATATAAT 57.988 37.037 0.00 0.00 0.00 1.28
445 451 7.724951 ACTCCCTCCGTCCTATAATATAATAGC 59.275 40.741 0.00 0.00 0.00 2.97
446 452 6.713903 TCCCTCCGTCCTATAATATAATAGCG 59.286 42.308 0.00 0.00 0.00 4.26
447 453 6.489361 CCCTCCGTCCTATAATATAATAGCGT 59.511 42.308 0.00 0.00 0.00 5.07
448 454 7.014038 CCCTCCGTCCTATAATATAATAGCGTT 59.986 40.741 0.00 0.00 0.00 4.84
449 455 8.411683 CCTCCGTCCTATAATATAATAGCGTTT 58.588 37.037 0.00 0.00 0.00 3.60
450 456 9.798994 CTCCGTCCTATAATATAATAGCGTTTT 57.201 33.333 0.00 0.00 0.00 2.43
462 468 7.900782 ATAATAGCGTTTTTGACACTACACT 57.099 32.000 0.00 0.00 0.00 3.55
463 469 8.991243 ATAATAGCGTTTTTGACACTACACTA 57.009 30.769 0.00 0.00 0.00 2.74
464 470 7.718272 AATAGCGTTTTTGACACTACACTAA 57.282 32.000 0.00 0.00 0.00 2.24
465 471 7.900782 ATAGCGTTTTTGACACTACACTAAT 57.099 32.000 0.00 0.00 0.00 1.73
466 472 5.985781 AGCGTTTTTGACACTACACTAATG 58.014 37.500 0.00 0.00 0.00 1.90
467 473 5.526111 AGCGTTTTTGACACTACACTAATGT 59.474 36.000 0.00 0.00 43.30 2.71
469 475 6.510478 GCGTTTTTGACACTACACTAATGTGA 60.510 38.462 3.03 0.00 46.55 3.58
470 476 7.403421 CGTTTTTGACACTACACTAATGTGAA 58.597 34.615 3.03 0.00 46.55 3.18
471 477 7.906010 CGTTTTTGACACTACACTAATGTGAAA 59.094 33.333 3.03 0.00 46.55 2.69
472 478 9.562583 GTTTTTGACACTACACTAATGTGAAAA 57.437 29.630 3.03 0.00 46.55 2.29
475 481 9.729023 TTTGACACTACACTAATGTGAAAAATG 57.271 29.630 3.03 0.00 46.55 2.32
476 482 7.359595 TGACACTACACTAATGTGAAAAATGC 58.640 34.615 3.03 0.00 46.55 3.56
477 483 7.228507 TGACACTACACTAATGTGAAAAATGCT 59.771 33.333 3.03 0.00 46.55 3.79
478 484 7.584987 ACACTACACTAATGTGAAAAATGCTC 58.415 34.615 3.03 0.00 46.55 4.26
479 485 7.445402 ACACTACACTAATGTGAAAAATGCTCT 59.555 33.333 3.03 0.00 46.55 4.09
480 486 8.292448 CACTACACTAATGTGAAAAATGCTCTT 58.708 33.333 3.03 0.00 46.55 2.85
481 487 9.502091 ACTACACTAATGTGAAAAATGCTCTTA 57.498 29.630 3.03 0.00 46.55 2.10
538 544 2.548480 GCGCCGAATAAGCCTTTATTCT 59.452 45.455 13.53 0.00 46.80 2.40
539 545 3.364068 GCGCCGAATAAGCCTTTATTCTC 60.364 47.826 13.53 6.98 46.80 2.87
540 546 3.807622 CGCCGAATAAGCCTTTATTCTCA 59.192 43.478 13.53 0.00 46.80 3.27
541 547 4.084328 CGCCGAATAAGCCTTTATTCTCAG 60.084 45.833 13.53 6.38 46.80 3.35
542 548 4.816925 GCCGAATAAGCCTTTATTCTCAGT 59.183 41.667 13.53 0.00 46.80 3.41
543 549 5.050023 GCCGAATAAGCCTTTATTCTCAGTC 60.050 44.000 13.53 0.21 46.80 3.51
544 550 5.175856 CCGAATAAGCCTTTATTCTCAGTCG 59.824 44.000 13.53 3.79 46.80 4.18
545 551 5.332656 CGAATAAGCCTTTATTCTCAGTCGC 60.333 44.000 13.53 0.00 46.80 5.19
546 552 1.927895 AGCCTTTATTCTCAGTCGCG 58.072 50.000 0.00 0.00 0.00 5.87
548 554 1.588861 GCCTTTATTCTCAGTCGCGTC 59.411 52.381 5.77 0.00 0.00 5.19
549 555 2.194271 CCTTTATTCTCAGTCGCGTCC 58.806 52.381 5.77 0.00 0.00 4.79
550 556 2.159226 CCTTTATTCTCAGTCGCGTCCT 60.159 50.000 5.77 0.00 0.00 3.85
551 557 2.561733 TTATTCTCAGTCGCGTCCTG 57.438 50.000 18.25 18.25 0.00 3.86
552 558 0.738975 TATTCTCAGTCGCGTCCTGG 59.261 55.000 22.00 15.17 0.00 4.45
555 561 0.607217 TCTCAGTCGCGTCCTGGTTA 60.607 55.000 22.00 9.94 0.00 2.85
673 736 1.131638 TTTCACCTGGTCACTCTGCT 58.868 50.000 0.00 0.00 0.00 4.24
674 737 0.681733 TTCACCTGGTCACTCTGCTC 59.318 55.000 0.00 0.00 0.00 4.26
675 738 0.178950 TCACCTGGTCACTCTGCTCT 60.179 55.000 0.00 0.00 0.00 4.09
676 739 0.246086 CACCTGGTCACTCTGCTCTC 59.754 60.000 0.00 0.00 0.00 3.20
677 740 1.247419 ACCTGGTCACTCTGCTCTCG 61.247 60.000 0.00 0.00 0.00 4.04
678 741 1.510383 CTGGTCACTCTGCTCTCGG 59.490 63.158 0.00 0.00 0.00 4.63
679 742 0.962855 CTGGTCACTCTGCTCTCGGA 60.963 60.000 0.00 0.00 0.00 4.55
724 787 4.373116 CGGTGGGACGGTGAGTGG 62.373 72.222 0.00 0.00 0.00 4.00
776 840 3.001514 GCCAAGGCAGAGGATCCA 58.998 61.111 15.82 0.00 41.49 3.41
887 955 3.237741 CGGATCTCCTGCTCCCCC 61.238 72.222 0.00 0.00 0.00 5.40
890 958 1.383803 GATCTCCTGCTCCCCCAGT 60.384 63.158 0.00 0.00 0.00 4.00
943 1011 2.301870 ACAAGTGGCTCCGTAGATTTCA 59.698 45.455 0.00 0.00 0.00 2.69
1091 1159 2.437180 TTACCCGAGCGAGCGAGA 60.437 61.111 0.00 0.00 0.00 4.04
1096 1164 2.024022 CGAGCGAGCGAGAAGAGG 59.976 66.667 0.00 0.00 0.00 3.69
1298 1366 2.813908 CCTCGCCGTGTTACTGCC 60.814 66.667 0.00 0.00 0.00 4.85
1309 1377 2.932614 GTGTTACTGCCTATGCACAGAG 59.067 50.000 8.88 0.00 44.23 3.35
1310 1378 1.936547 GTTACTGCCTATGCACAGAGC 59.063 52.381 8.88 4.00 44.23 4.09
1337 1405 4.451150 GTCCCCTGTGCGATGCGA 62.451 66.667 0.00 0.00 0.00 5.10
1345 1413 2.161486 GTGCGATGCGACTGACCTC 61.161 63.158 0.00 0.00 0.00 3.85
1513 1581 1.112113 GCTCGATCTGTGGTTCCCTA 58.888 55.000 0.00 0.00 0.00 3.53
1577 1645 3.534554 TGTATGCTCTGCTTGTATGTGG 58.465 45.455 0.00 0.00 0.00 4.17
1605 1673 1.592560 CGATCGATGTCGCGAGCTTC 61.593 60.000 10.24 11.28 43.81 3.86
1729 1797 4.481930 TCTGTCCAAATTTGTAGCGTTG 57.518 40.909 16.73 0.11 0.00 4.10
1733 1801 1.068885 CCAAATTTGTAGCGTTGCCGA 60.069 47.619 16.73 0.00 35.63 5.54
1736 1804 3.569250 AATTTGTAGCGTTGCCGATTT 57.431 38.095 0.00 0.00 35.63 2.17
1737 1805 3.569250 ATTTGTAGCGTTGCCGATTTT 57.431 38.095 0.00 0.00 35.63 1.82
1801 1869 6.485313 CCCATACTCGTAATGATGCCTTAAAA 59.515 38.462 0.00 0.00 0.00 1.52
1803 1871 9.214957 CCATACTCGTAATGATGCCTTAAAATA 57.785 33.333 0.00 0.00 0.00 1.40
1881 1949 7.979537 GTCACCACAAGGAAGAAAAGTAAAAAT 59.020 33.333 0.00 0.00 38.69 1.82
1929 2009 3.490759 CCGCGTACTGGCTTGCTG 61.491 66.667 4.92 0.00 0.00 4.41
2033 2123 3.099905 CTGGAGTGTGGGTTCTCTATGA 58.900 50.000 0.00 0.00 0.00 2.15
2125 3346 4.101942 GAGTAAGAGCAAGTGATGTCGAG 58.898 47.826 0.00 0.00 0.00 4.04
2173 3394 7.568199 AGACAAACTACAGTAAAATGCAAGT 57.432 32.000 0.00 0.00 0.00 3.16
2174 3395 7.996385 AGACAAACTACAGTAAAATGCAAGTT 58.004 30.769 0.00 0.00 33.49 2.66
2175 3396 8.129211 AGACAAACTACAGTAAAATGCAAGTTC 58.871 33.333 0.00 0.00 31.86 3.01
2176 3397 7.200455 ACAAACTACAGTAAAATGCAAGTTCC 58.800 34.615 0.00 0.00 31.86 3.62
2177 3398 7.068226 ACAAACTACAGTAAAATGCAAGTTCCT 59.932 33.333 0.00 0.00 31.86 3.36
2178 3399 6.560253 ACTACAGTAAAATGCAAGTTCCTG 57.440 37.500 0.00 0.00 31.69 3.86
2179 3400 6.062095 ACTACAGTAAAATGCAAGTTCCTGT 58.938 36.000 13.19 13.19 38.76 4.00
2180 3401 5.852282 ACAGTAAAATGCAAGTTCCTGTT 57.148 34.783 5.46 0.00 33.98 3.16
2181 3402 5.591099 ACAGTAAAATGCAAGTTCCTGTTG 58.409 37.500 5.46 0.00 33.98 3.33
2182 3403 4.984161 CAGTAAAATGCAAGTTCCTGTTGG 59.016 41.667 0.00 0.00 0.00 3.77
2183 3404 2.531522 AAATGCAAGTTCCTGTTGGC 57.468 45.000 0.00 0.00 0.00 4.52
2184 3405 0.681175 AATGCAAGTTCCTGTTGGCC 59.319 50.000 0.00 0.00 0.00 5.36
2185 3406 0.178953 ATGCAAGTTCCTGTTGGCCT 60.179 50.000 3.32 0.00 0.00 5.19
2186 3407 0.396974 TGCAAGTTCCTGTTGGCCTT 60.397 50.000 3.32 0.00 0.00 4.35
2187 3408 0.315251 GCAAGTTCCTGTTGGCCTTC 59.685 55.000 3.32 0.00 0.00 3.46
2188 3409 1.986882 CAAGTTCCTGTTGGCCTTCT 58.013 50.000 3.32 0.00 0.00 2.85
2189 3410 1.610522 CAAGTTCCTGTTGGCCTTCTG 59.389 52.381 3.32 0.88 0.00 3.02
2190 3411 0.846693 AGTTCCTGTTGGCCTTCTGT 59.153 50.000 3.32 0.00 0.00 3.41
2191 3412 1.215423 AGTTCCTGTTGGCCTTCTGTT 59.785 47.619 3.32 0.00 0.00 3.16
2192 3413 1.609072 GTTCCTGTTGGCCTTCTGTTC 59.391 52.381 3.32 0.00 0.00 3.18
2193 3414 0.110486 TCCTGTTGGCCTTCTGTTCC 59.890 55.000 3.32 0.00 0.00 3.62
2194 3415 0.111253 CCTGTTGGCCTTCTGTTCCT 59.889 55.000 3.32 0.00 0.00 3.36
2195 3416 1.479389 CCTGTTGGCCTTCTGTTCCTT 60.479 52.381 3.32 0.00 0.00 3.36
2196 3417 2.310538 CTGTTGGCCTTCTGTTCCTTT 58.689 47.619 3.32 0.00 0.00 3.11
2197 3418 2.695147 CTGTTGGCCTTCTGTTCCTTTT 59.305 45.455 3.32 0.00 0.00 2.27
2198 3419 2.430332 TGTTGGCCTTCTGTTCCTTTTG 59.570 45.455 3.32 0.00 0.00 2.44
2199 3420 2.430694 GTTGGCCTTCTGTTCCTTTTGT 59.569 45.455 3.32 0.00 0.00 2.83
2200 3421 2.745968 TGGCCTTCTGTTCCTTTTGTT 58.254 42.857 3.32 0.00 0.00 2.83
2201 3422 3.103742 TGGCCTTCTGTTCCTTTTGTTT 58.896 40.909 3.32 0.00 0.00 2.83
2202 3423 3.517500 TGGCCTTCTGTTCCTTTTGTTTT 59.482 39.130 3.32 0.00 0.00 2.43
2203 3424 3.871006 GGCCTTCTGTTCCTTTTGTTTTG 59.129 43.478 0.00 0.00 0.00 2.44
2204 3425 3.871006 GCCTTCTGTTCCTTTTGTTTTGG 59.129 43.478 0.00 0.00 0.00 3.28
2205 3426 4.441792 CCTTCTGTTCCTTTTGTTTTGGG 58.558 43.478 0.00 0.00 0.00 4.12
2206 3427 3.535280 TCTGTTCCTTTTGTTTTGGGC 57.465 42.857 0.00 0.00 0.00 5.36
2207 3428 3.103742 TCTGTTCCTTTTGTTTTGGGCT 58.896 40.909 0.00 0.00 0.00 5.19
2208 3429 3.118811 TCTGTTCCTTTTGTTTTGGGCTG 60.119 43.478 0.00 0.00 0.00 4.85
2209 3430 2.569404 TGTTCCTTTTGTTTTGGGCTGT 59.431 40.909 0.00 0.00 0.00 4.40
2210 3431 3.769844 TGTTCCTTTTGTTTTGGGCTGTA 59.230 39.130 0.00 0.00 0.00 2.74
2211 3432 4.223032 TGTTCCTTTTGTTTTGGGCTGTAA 59.777 37.500 0.00 0.00 0.00 2.41
2212 3433 5.104735 TGTTCCTTTTGTTTTGGGCTGTAAT 60.105 36.000 0.00 0.00 0.00 1.89
2213 3434 6.098409 TGTTCCTTTTGTTTTGGGCTGTAATA 59.902 34.615 0.00 0.00 0.00 0.98
2214 3435 6.732896 TCCTTTTGTTTTGGGCTGTAATAA 57.267 33.333 0.00 0.00 0.00 1.40
2215 3436 7.309770 TCCTTTTGTTTTGGGCTGTAATAAT 57.690 32.000 0.00 0.00 0.00 1.28
2216 3437 7.740805 TCCTTTTGTTTTGGGCTGTAATAATT 58.259 30.769 0.00 0.00 0.00 1.40
2217 3438 8.871125 TCCTTTTGTTTTGGGCTGTAATAATTA 58.129 29.630 0.00 0.00 0.00 1.40
2218 3439 9.150348 CCTTTTGTTTTGGGCTGTAATAATTAG 57.850 33.333 0.00 0.00 0.00 1.73
2219 3440 9.921637 CTTTTGTTTTGGGCTGTAATAATTAGA 57.078 29.630 0.00 0.00 0.00 2.10
2220 3441 9.699703 TTTTGTTTTGGGCTGTAATAATTAGAC 57.300 29.630 0.00 0.00 0.00 2.59
2221 3442 8.644374 TTGTTTTGGGCTGTAATAATTAGACT 57.356 30.769 0.00 0.00 0.00 3.24
2222 3443 8.644374 TGTTTTGGGCTGTAATAATTAGACTT 57.356 30.769 0.00 0.00 0.00 3.01
2223 3444 9.742144 TGTTTTGGGCTGTAATAATTAGACTTA 57.258 29.630 0.00 0.00 0.00 2.24
2225 3446 8.446599 TTTGGGCTGTAATAATTAGACTTAGC 57.553 34.615 0.00 0.00 0.00 3.09
2226 3447 7.374975 TGGGCTGTAATAATTAGACTTAGCT 57.625 36.000 0.00 0.00 0.00 3.32
2227 3448 7.442656 TGGGCTGTAATAATTAGACTTAGCTC 58.557 38.462 0.00 0.00 0.00 4.09
2228 3449 7.290248 TGGGCTGTAATAATTAGACTTAGCTCT 59.710 37.037 0.00 0.00 30.77 4.09
2229 3450 7.600752 GGGCTGTAATAATTAGACTTAGCTCTG 59.399 40.741 0.00 0.00 0.00 3.35
2230 3451 8.361139 GGCTGTAATAATTAGACTTAGCTCTGA 58.639 37.037 0.00 0.00 0.00 3.27
2231 3452 9.405587 GCTGTAATAATTAGACTTAGCTCTGAG 57.594 37.037 0.00 0.00 0.00 3.35
2237 3458 9.979578 ATAATTAGACTTAGCTCTGAGATGTTG 57.020 33.333 9.28 0.00 0.00 3.33
2238 3459 7.652524 ATTAGACTTAGCTCTGAGATGTTGA 57.347 36.000 9.28 0.00 0.00 3.18
2239 3460 5.581126 AGACTTAGCTCTGAGATGTTGAG 57.419 43.478 9.28 2.77 0.00 3.02
2240 3461 5.016173 AGACTTAGCTCTGAGATGTTGAGT 58.984 41.667 9.28 5.90 0.00 3.41
2241 3462 5.480073 AGACTTAGCTCTGAGATGTTGAGTT 59.520 40.000 9.28 0.00 0.00 3.01
2242 3463 5.477510 ACTTAGCTCTGAGATGTTGAGTTG 58.522 41.667 9.28 0.00 0.00 3.16
2243 3464 5.011533 ACTTAGCTCTGAGATGTTGAGTTGT 59.988 40.000 9.28 0.00 0.00 3.32
2244 3465 3.661944 AGCTCTGAGATGTTGAGTTGTG 58.338 45.455 9.28 0.00 0.00 3.33
2245 3466 2.159234 GCTCTGAGATGTTGAGTTGTGC 59.841 50.000 9.28 0.00 0.00 4.57
2246 3467 3.661944 CTCTGAGATGTTGAGTTGTGCT 58.338 45.455 0.00 0.00 0.00 4.40
2247 3468 3.396560 TCTGAGATGTTGAGTTGTGCTG 58.603 45.455 0.00 0.00 0.00 4.41
2248 3469 1.875514 TGAGATGTTGAGTTGTGCTGC 59.124 47.619 0.00 0.00 0.00 5.25
2249 3470 2.149578 GAGATGTTGAGTTGTGCTGCT 58.850 47.619 0.00 0.00 0.00 4.24
2250 3471 2.149578 AGATGTTGAGTTGTGCTGCTC 58.850 47.619 0.00 0.00 0.00 4.26
2251 3472 1.875514 GATGTTGAGTTGTGCTGCTCA 59.124 47.619 0.00 0.00 39.66 4.26
2252 3473 1.302366 TGTTGAGTTGTGCTGCTCAG 58.698 50.000 4.48 0.00 41.93 3.35
2253 3474 0.590195 GTTGAGTTGTGCTGCTCAGG 59.410 55.000 4.48 0.00 41.93 3.86
2254 3475 0.181114 TTGAGTTGTGCTGCTCAGGT 59.819 50.000 4.48 0.00 41.93 4.00
2255 3476 0.181114 TGAGTTGTGCTGCTCAGGTT 59.819 50.000 4.48 0.00 36.89 3.50
2256 3477 1.312815 GAGTTGTGCTGCTCAGGTTT 58.687 50.000 4.48 0.00 0.00 3.27
2257 3478 1.678101 GAGTTGTGCTGCTCAGGTTTT 59.322 47.619 4.48 0.00 0.00 2.43
2258 3479 1.678101 AGTTGTGCTGCTCAGGTTTTC 59.322 47.619 4.48 0.00 0.00 2.29
2259 3480 0.662619 TTGTGCTGCTCAGGTTTTCG 59.337 50.000 4.48 0.00 0.00 3.46
2260 3481 1.081840 GTGCTGCTCAGGTTTTCGC 60.082 57.895 0.00 0.00 0.00 4.70
2261 3482 2.260869 TGCTGCTCAGGTTTTCGCC 61.261 57.895 0.00 0.00 0.00 5.54
2262 3483 2.982744 GCTGCTCAGGTTTTCGCCC 61.983 63.158 0.00 0.00 0.00 6.13
2263 3484 2.282180 TGCTCAGGTTTTCGCCCC 60.282 61.111 0.00 0.00 0.00 5.80
2264 3485 2.282180 GCTCAGGTTTTCGCCCCA 60.282 61.111 0.00 0.00 0.00 4.96
2265 3486 1.678970 GCTCAGGTTTTCGCCCCAT 60.679 57.895 0.00 0.00 0.00 4.00
2266 3487 1.937546 GCTCAGGTTTTCGCCCCATG 61.938 60.000 0.00 0.00 0.00 3.66
2267 3488 1.304052 TCAGGTTTTCGCCCCATGG 60.304 57.895 4.14 4.14 0.00 3.66
2277 3498 2.511600 CCCCATGGCGTTCGTCTC 60.512 66.667 6.09 0.00 0.00 3.36
2278 3499 2.885644 CCCATGGCGTTCGTCTCG 60.886 66.667 6.09 0.00 0.00 4.04
2279 3500 2.180769 CCATGGCGTTCGTCTCGA 59.819 61.111 0.00 0.00 0.00 4.04
2280 3501 2.158959 CCATGGCGTTCGTCTCGAC 61.159 63.158 0.00 0.00 34.89 4.20
2300 3521 4.988598 CAGGCGAACGCAGTGGGT 62.989 66.667 20.16 7.07 45.00 4.51
2301 3522 4.250305 AGGCGAACGCAGTGGGTT 62.250 61.111 24.02 24.02 45.00 4.11
2302 3523 3.284449 GGCGAACGCAGTGGGTTT 61.284 61.111 24.49 10.28 45.00 3.27
2303 3524 1.962306 GGCGAACGCAGTGGGTTTA 60.962 57.895 24.49 0.00 45.00 2.01
2304 3525 1.205820 GCGAACGCAGTGGGTTTAC 59.794 57.895 24.49 16.31 45.00 2.01
2305 3526 1.226030 GCGAACGCAGTGGGTTTACT 61.226 55.000 24.49 4.48 45.00 2.24
2306 3527 0.511221 CGAACGCAGTGGGTTTACTG 59.489 55.000 24.49 12.46 45.00 2.74
2307 3528 0.872388 GAACGCAGTGGGTTTACTGG 59.128 55.000 24.49 1.63 45.00 4.00
2308 3529 1.170290 AACGCAGTGGGTTTACTGGC 61.170 55.000 19.02 0.57 45.00 4.85
2309 3530 1.599518 CGCAGTGGGTTTACTGGCA 60.600 57.895 7.87 0.00 46.32 4.92
2310 3531 1.577328 CGCAGTGGGTTTACTGGCAG 61.577 60.000 14.16 14.16 46.32 4.85
2311 3532 0.537371 GCAGTGGGTTTACTGGCAGT 60.537 55.000 25.34 25.34 46.32 4.40
2312 3533 1.238439 CAGTGGGTTTACTGGCAGTG 58.762 55.000 29.65 5.98 43.35 3.66
2313 3534 0.537371 AGTGGGTTTACTGGCAGTGC 60.537 55.000 29.65 18.18 0.00 4.40
2314 3535 0.537371 GTGGGTTTACTGGCAGTGCT 60.537 55.000 29.65 5.82 0.00 4.40
2315 3536 0.250727 TGGGTTTACTGGCAGTGCTC 60.251 55.000 29.65 18.75 0.00 4.26
2316 3537 1.298859 GGGTTTACTGGCAGTGCTCG 61.299 60.000 29.65 8.79 0.00 5.03
2317 3538 0.320421 GGTTTACTGGCAGTGCTCGA 60.320 55.000 29.65 6.69 0.00 4.04
2318 3539 1.508632 GTTTACTGGCAGTGCTCGAA 58.491 50.000 29.65 12.93 0.00 3.71
2319 3540 1.194772 GTTTACTGGCAGTGCTCGAAC 59.805 52.381 29.65 19.51 0.00 3.95
2320 3541 0.679505 TTACTGGCAGTGCTCGAACT 59.320 50.000 29.65 1.81 0.00 3.01
2321 3542 0.679505 TACTGGCAGTGCTCGAACTT 59.320 50.000 29.65 1.02 0.00 2.66
2322 3543 0.882042 ACTGGCAGTGCTCGAACTTG 60.882 55.000 21.37 0.00 0.00 3.16
2323 3544 2.180131 CTGGCAGTGCTCGAACTTGC 62.180 60.000 16.11 7.16 0.00 4.01
2324 3545 1.963338 GGCAGTGCTCGAACTTGCT 60.963 57.895 16.11 0.00 0.00 3.91
2325 3546 1.510480 GGCAGTGCTCGAACTTGCTT 61.510 55.000 16.11 0.00 0.00 3.91
2326 3547 0.308993 GCAGTGCTCGAACTTGCTTT 59.691 50.000 8.18 0.00 0.00 3.51
2327 3548 1.531149 GCAGTGCTCGAACTTGCTTTA 59.469 47.619 8.18 0.00 0.00 1.85
2328 3549 2.663063 GCAGTGCTCGAACTTGCTTTAC 60.663 50.000 8.18 0.00 0.00 2.01
2329 3550 2.096218 CAGTGCTCGAACTTGCTTTACC 60.096 50.000 0.00 0.00 0.00 2.85
2330 3551 2.143925 GTGCTCGAACTTGCTTTACCT 58.856 47.619 0.00 0.00 0.00 3.08
2331 3552 2.157863 GTGCTCGAACTTGCTTTACCTC 59.842 50.000 0.00 0.00 0.00 3.85
2332 3553 2.037251 TGCTCGAACTTGCTTTACCTCT 59.963 45.455 0.00 0.00 0.00 3.69
2333 3554 3.067833 GCTCGAACTTGCTTTACCTCTT 58.932 45.455 0.00 0.00 0.00 2.85
2334 3555 3.123790 GCTCGAACTTGCTTTACCTCTTC 59.876 47.826 0.00 0.00 0.00 2.87
2335 3556 3.660865 TCGAACTTGCTTTACCTCTTCC 58.339 45.455 0.00 0.00 0.00 3.46
2336 3557 2.742589 CGAACTTGCTTTACCTCTTCCC 59.257 50.000 0.00 0.00 0.00 3.97
2337 3558 2.881111 ACTTGCTTTACCTCTTCCCC 57.119 50.000 0.00 0.00 0.00 4.81
2338 3559 1.354705 ACTTGCTTTACCTCTTCCCCC 59.645 52.381 0.00 0.00 0.00 5.40
2354 3575 2.907458 CCCCCTCCTGAAATGTTTCT 57.093 50.000 6.99 0.00 38.02 2.52
2355 3576 2.450476 CCCCCTCCTGAAATGTTTCTG 58.550 52.381 6.99 6.28 38.02 3.02
2365 3586 5.894807 CTGAAATGTTTCTGGAACTGTTGT 58.105 37.500 0.00 0.00 39.08 3.32
2366 3587 7.026631 CTGAAATGTTTCTGGAACTGTTGTA 57.973 36.000 0.00 0.00 39.08 2.41
2367 3588 7.581213 TGAAATGTTTCTGGAACTGTTGTAT 57.419 32.000 0.00 0.00 39.08 2.29
2368 3589 8.006298 TGAAATGTTTCTGGAACTGTTGTATT 57.994 30.769 0.00 0.00 39.08 1.89
2369 3590 8.474025 TGAAATGTTTCTGGAACTGTTGTATTT 58.526 29.630 0.00 0.00 39.08 1.40
2370 3591 8.871686 AAATGTTTCTGGAACTGTTGTATTTC 57.128 30.769 0.00 0.00 39.08 2.17
2371 3592 6.385649 TGTTTCTGGAACTGTTGTATTTCC 57.614 37.500 0.00 0.00 38.31 3.13
2372 3593 5.008217 TGTTTCTGGAACTGTTGTATTTCCG 59.992 40.000 0.00 0.00 40.13 4.30
2373 3594 4.345859 TCTGGAACTGTTGTATTTCCGT 57.654 40.909 0.00 0.00 40.13 4.69
2374 3595 4.710324 TCTGGAACTGTTGTATTTCCGTT 58.290 39.130 0.00 0.00 40.13 4.44
2375 3596 4.753107 TCTGGAACTGTTGTATTTCCGTTC 59.247 41.667 0.00 0.00 40.13 3.95
2376 3597 4.452825 TGGAACTGTTGTATTTCCGTTCA 58.547 39.130 0.00 0.00 40.13 3.18
2377 3598 5.067273 TGGAACTGTTGTATTTCCGTTCAT 58.933 37.500 0.00 0.00 40.13 2.57
2378 3599 5.533154 TGGAACTGTTGTATTTCCGTTCATT 59.467 36.000 0.00 0.00 40.13 2.57
2379 3600 6.039941 TGGAACTGTTGTATTTCCGTTCATTT 59.960 34.615 0.00 0.00 40.13 2.32
2380 3601 6.362283 GGAACTGTTGTATTTCCGTTCATTTG 59.638 38.462 0.00 0.00 34.13 2.32
2381 3602 5.219633 ACTGTTGTATTTCCGTTCATTTGC 58.780 37.500 0.00 0.00 0.00 3.68
2382 3603 5.188327 TGTTGTATTTCCGTTCATTTGCA 57.812 34.783 0.00 0.00 0.00 4.08
2383 3604 5.592054 TGTTGTATTTCCGTTCATTTGCAA 58.408 33.333 0.00 0.00 0.00 4.08
2384 3605 6.219473 TGTTGTATTTCCGTTCATTTGCAAT 58.781 32.000 0.00 0.00 0.00 3.56
2385 3606 6.364706 TGTTGTATTTCCGTTCATTTGCAATC 59.635 34.615 0.00 0.00 0.00 2.67
2386 3607 5.092105 TGTATTTCCGTTCATTTGCAATCG 58.908 37.500 0.00 0.98 0.00 3.34
2387 3608 2.627863 TTCCGTTCATTTGCAATCGG 57.372 45.000 0.00 10.15 39.40 4.18
2388 3609 1.529226 TCCGTTCATTTGCAATCGGT 58.471 45.000 18.98 0.00 39.14 4.69
2389 3610 1.883275 TCCGTTCATTTGCAATCGGTT 59.117 42.857 18.98 0.00 39.14 4.44
2390 3611 2.095466 TCCGTTCATTTGCAATCGGTTC 60.095 45.455 18.98 3.86 39.14 3.62
2391 3612 2.351253 CCGTTCATTTGCAATCGGTTCA 60.351 45.455 0.00 0.00 34.38 3.18
2392 3613 2.910482 CGTTCATTTGCAATCGGTTCAG 59.090 45.455 0.00 0.00 0.00 3.02
2393 3614 2.634982 TCATTTGCAATCGGTTCAGC 57.365 45.000 0.00 0.00 0.00 4.26
2394 3615 1.202114 TCATTTGCAATCGGTTCAGCC 59.798 47.619 0.00 0.00 0.00 4.85
2395 3616 0.532115 ATTTGCAATCGGTTCAGCCC 59.468 50.000 0.00 0.00 0.00 5.19
2399 3620 2.754375 AATCGGTTCAGCCCGGTT 59.246 55.556 0.00 0.00 46.18 4.44
2402 3623 4.367023 CGGTTCAGCCCGGTTCGA 62.367 66.667 0.00 0.00 44.32 3.71
2403 3624 2.031465 GGTTCAGCCCGGTTCGAA 59.969 61.111 0.00 0.00 0.00 3.71
2404 3625 1.598685 GGTTCAGCCCGGTTCGAAA 60.599 57.895 0.00 0.00 0.00 3.46
2405 3626 1.167781 GGTTCAGCCCGGTTCGAAAA 61.168 55.000 0.00 0.00 0.00 2.29
2406 3627 0.664224 GTTCAGCCCGGTTCGAAAAA 59.336 50.000 0.00 0.00 0.00 1.94
2663 3906 4.869861 GGCAGCCAAATTAAAACCATAGTG 59.130 41.667 6.55 0.00 0.00 2.74
2664 3907 4.869861 GCAGCCAAATTAAAACCATAGTGG 59.130 41.667 0.00 0.00 45.02 4.00
2665 3908 5.337169 GCAGCCAAATTAAAACCATAGTGGA 60.337 40.000 2.45 0.00 40.96 4.02
2666 3909 6.630188 GCAGCCAAATTAAAACCATAGTGGAT 60.630 38.462 2.45 0.00 40.96 3.41
2667 3910 7.417342 GCAGCCAAATTAAAACCATAGTGGATA 60.417 37.037 2.45 0.00 40.96 2.59
2668 3911 8.474025 CAGCCAAATTAAAACCATAGTGGATAA 58.526 33.333 2.45 0.54 40.96 1.75
2669 3912 8.474831 AGCCAAATTAAAACCATAGTGGATAAC 58.525 33.333 2.45 0.00 40.96 1.89
2670 3913 8.474831 GCCAAATTAAAACCATAGTGGATAACT 58.525 33.333 2.45 0.00 40.96 2.24
2745 3988 1.337703 GCATGTGTTGAAGGTTCTGCA 59.662 47.619 0.00 0.00 0.00 4.41
2913 4156 9.227777 GAAAGTACCAATATTCTTGTGGTTAGT 57.772 33.333 1.43 0.00 43.19 2.24
2914 4157 8.561738 AAGTACCAATATTCTTGTGGTTAGTG 57.438 34.615 1.43 0.00 43.19 2.74
3019 4262 5.594317 AGTGGTAAAATAATTAGCCAGGCAG 59.406 40.000 15.80 0.00 0.00 4.85
3031 4274 3.484407 AGCCAGGCAGCTCTTATTTATG 58.516 45.455 15.80 0.00 39.48 1.90
3038 4281 7.358066 CAGGCAGCTCTTATTTATGTATGTTG 58.642 38.462 0.00 0.00 0.00 3.33
3086 4331 6.132791 TGTTATAGTTGCTCGAGAGTAAGG 57.867 41.667 18.75 0.00 33.78 2.69
3264 4509 6.139671 ACTTCTGTGAGGATGTATCAGGTAT 58.860 40.000 0.00 0.00 0.00 2.73
3313 4558 0.539669 CCCCCACTTGGTTGGAGAAC 60.540 60.000 0.00 0.00 39.24 3.01
3641 5215 1.528129 GGCAGTCACTCTTTCCTTGG 58.472 55.000 0.00 0.00 0.00 3.61
3678 5252 5.705609 ACCAAGTTAAGGCATACTTTGTG 57.294 39.130 0.00 0.00 40.64 3.33
3839 5413 4.525912 ATTTGGAACCTTCAACATCTGC 57.474 40.909 0.00 0.00 0.00 4.26
4250 5824 6.748333 ACATCAGTGAAAGTATCCAATGTG 57.252 37.500 0.00 0.00 31.24 3.21
4343 5917 4.736473 AGTAGCCAGGTAACCAACAAAAT 58.264 39.130 0.00 0.00 37.17 1.82
4344 5918 5.883180 AGTAGCCAGGTAACCAACAAAATA 58.117 37.500 0.00 0.00 37.17 1.40
4345 5919 6.308566 AGTAGCCAGGTAACCAACAAAATAA 58.691 36.000 0.00 0.00 37.17 1.40
4347 5921 6.096673 AGCCAGGTAACCAACAAAATAAAG 57.903 37.500 0.00 0.00 37.17 1.85
4348 5922 5.600898 AGCCAGGTAACCAACAAAATAAAGT 59.399 36.000 0.00 0.00 37.17 2.66
4350 5924 6.220201 CCAGGTAACCAACAAAATAAAGTGG 58.780 40.000 0.00 0.00 37.17 4.00
4353 5927 3.378911 ACCAACAAAATAAAGTGGCCG 57.621 42.857 0.00 0.00 0.00 6.13
4355 5929 3.890147 ACCAACAAAATAAAGTGGCCGTA 59.110 39.130 0.00 0.00 0.00 4.02
4356 5930 4.525100 ACCAACAAAATAAAGTGGCCGTAT 59.475 37.500 0.00 0.00 0.00 3.06
4357 5931 4.862018 CCAACAAAATAAAGTGGCCGTATG 59.138 41.667 0.00 0.00 0.00 2.39
4358 5932 4.104696 ACAAAATAAAGTGGCCGTATGC 57.895 40.909 0.00 0.00 40.16 3.14
4359 5933 3.508012 ACAAAATAAAGTGGCCGTATGCA 59.492 39.130 0.00 0.00 43.89 3.96
4360 5934 4.159506 ACAAAATAAAGTGGCCGTATGCAT 59.840 37.500 3.79 3.79 43.89 3.96
4361 5935 4.568152 AAATAAAGTGGCCGTATGCATC 57.432 40.909 0.19 0.00 43.89 3.91
4362 5936 1.577468 TAAAGTGGCCGTATGCATCG 58.423 50.000 0.19 7.03 43.89 3.84
4363 5937 1.714899 AAAGTGGCCGTATGCATCGC 61.715 55.000 0.19 3.34 43.89 4.58
4364 5938 3.649986 GTGGCCGTATGCATCGCC 61.650 66.667 20.23 20.23 43.89 5.54
4365 5939 4.927782 TGGCCGTATGCATCGCCC 62.928 66.667 22.75 16.75 43.89 6.13
4366 5940 4.927782 GGCCGTATGCATCGCCCA 62.928 66.667 17.54 0.00 43.89 5.36
4367 5941 3.349006 GCCGTATGCATCGCCCAG 61.349 66.667 0.19 0.00 40.77 4.45
4368 5942 2.421314 CCGTATGCATCGCCCAGA 59.579 61.111 0.19 0.00 0.00 3.86
4369 5943 1.004560 CCGTATGCATCGCCCAGAT 60.005 57.895 0.19 0.00 41.01 2.90
4376 5950 2.827423 ATCGCCCAGATGCAGAGG 59.173 61.111 0.00 0.00 38.36 3.69
4377 5951 3.472943 ATCGCCCAGATGCAGAGGC 62.473 63.158 8.59 8.59 42.18 4.70
4380 5954 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
4381 5955 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
4382 5956 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
4388 5962 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
4401 5975 4.586306 GGGGTCATCCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 35.33 1.85
4402 5976 4.930696 GGGGTCATCCTCCTTTTCTAAAA 58.069 43.478 0.00 0.00 35.33 1.52
4403 5977 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
4423 5997 2.435372 AAATAGAGCCCATTTGCCGA 57.565 45.000 0.00 0.00 0.00 5.54
4450 6024 2.619165 CGTGCTTGCATGGTGCTGA 61.619 57.895 6.91 0.00 45.31 4.26
4464 6038 3.321396 TGGTGCTGATTTGCATTCTTTGA 59.679 39.130 0.00 0.00 45.23 2.69
4666 6242 0.179034 CTGCCCCCTCTGTGATTAGC 60.179 60.000 0.00 0.00 0.00 3.09
4772 6353 5.119898 GCATGTTCAAATTCGGTTGCATAAA 59.880 36.000 0.00 0.00 0.00 1.40
4961 6546 5.410439 GCATTTGCATGACTTGAAATTCCTT 59.590 36.000 0.00 0.00 41.59 3.36
5268 6853 2.108568 GACTGCTCTAGTCGGGACC 58.891 63.158 0.00 0.00 45.77 4.46
5278 6863 2.514592 TCGGGACCGGCTAGTACG 60.515 66.667 11.27 0.00 40.25 3.67
5320 6914 1.459730 GGCCTTCCCGGGTCTAGAT 60.460 63.158 22.86 0.00 0.00 1.98
5399 6993 1.039068 AGGATCTGACTCGGCTCATG 58.961 55.000 0.00 0.00 0.00 3.07
5410 7004 1.490693 CGGCTCATGTCATGTACGCC 61.491 60.000 22.38 22.38 36.54 5.68
5412 7006 0.933097 GCTCATGTCATGTACGCCTG 59.067 55.000 12.54 0.00 0.00 4.85
5553 7147 5.372343 TTTATCAGCTATGCCAGGAAAGA 57.628 39.130 0.00 0.00 0.00 2.52
5751 7787 5.748402 ACATAGATCCTGATTGCAAGTTCA 58.252 37.500 4.94 3.75 0.00 3.18
5832 7868 6.472686 AGTATCTCAGGATGTAGGTGTTTC 57.527 41.667 0.00 0.00 37.40 2.78
5863 7899 8.506168 AAAATGTGTATGACTTGGTATGTAGG 57.494 34.615 0.00 0.00 0.00 3.18
5864 7900 7.432148 AATGTGTATGACTTGGTATGTAGGA 57.568 36.000 0.00 0.00 0.00 2.94
5865 7901 6.465439 TGTGTATGACTTGGTATGTAGGAG 57.535 41.667 0.00 0.00 0.00 3.69
5866 7902 5.955959 TGTGTATGACTTGGTATGTAGGAGT 59.044 40.000 0.00 0.00 0.00 3.85
5867 7903 7.120716 TGTGTATGACTTGGTATGTAGGAGTA 58.879 38.462 0.00 0.00 0.00 2.59
5868 7904 7.783119 TGTGTATGACTTGGTATGTAGGAGTAT 59.217 37.037 0.00 0.00 0.00 2.12
5895 7931 6.761242 CAGTATGATTGACTCCATTTCCGTAA 59.239 38.462 0.00 0.00 39.69 3.18
5927 7982 2.745037 GTGTGGTAGTTCGGCCCA 59.255 61.111 0.00 0.00 0.00 5.36
5931 7986 2.187163 GGTAGTTCGGCCCAGCTC 59.813 66.667 0.00 0.00 0.00 4.09
5947 8003 3.589988 CAGCTCTGTGGAATAGAACGTT 58.410 45.455 0.00 0.00 32.09 3.99
6005 8072 5.045286 AGCCAATAATCAAAGTGGAGAGTCT 60.045 40.000 0.00 0.00 32.54 3.24
6052 8122 3.498397 AGAAACAAACGTGCATACCTCAG 59.502 43.478 0.00 0.00 0.00 3.35
6078 8148 8.579863 GTGGAAAAGCAGCTGGAATTTATATAT 58.420 33.333 17.12 0.00 0.00 0.86
6079 8149 9.806448 TGGAAAAGCAGCTGGAATTTATATATA 57.194 29.630 17.12 0.00 0.00 0.86
6236 8309 8.106247 TCTTTCCAACAACAGTTTATATGGAC 57.894 34.615 5.87 0.00 0.00 4.02
6237 8310 7.721842 TCTTTCCAACAACAGTTTATATGGACA 59.278 33.333 5.87 1.03 0.00 4.02
6238 8311 8.415950 TTTCCAACAACAGTTTATATGGACAT 57.584 30.769 5.87 0.00 0.00 3.06
6239 8312 8.415950 TTCCAACAACAGTTTATATGGACATT 57.584 30.769 5.87 0.00 0.00 2.71
6240 8313 9.521841 TTCCAACAACAGTTTATATGGACATTA 57.478 29.630 5.87 0.00 0.00 1.90
6241 8314 9.521841 TCCAACAACAGTTTATATGGACATTAA 57.478 29.630 3.16 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.569226 GCATCCTACTATGACAATTTCCATGC 60.569 42.308 0.00 0.00 0.00 4.06
8 9 6.291377 TCCAGCATCCTACTATGACAATTTC 58.709 40.000 0.00 0.00 0.00 2.17
16 17 7.397221 TCCAAATATTCCAGCATCCTACTATG 58.603 38.462 0.00 0.00 0.00 2.23
20 21 6.716628 TGAATCCAAATATTCCAGCATCCTAC 59.283 38.462 0.00 0.00 35.40 3.18
56 57 4.764823 TGGTTGTATGGCTCTAAAAACCTG 59.235 41.667 0.00 0.00 37.17 4.00
58 59 5.466819 GTTGGTTGTATGGCTCTAAAAACC 58.533 41.667 0.00 0.00 36.86 3.27
83 84 4.043596 AGGAAGTATCTCCAAGCCTGAAT 58.956 43.478 0.00 0.00 38.02 2.57
100 101 3.008330 CTGGATGACTGCTTTGAGGAAG 58.992 50.000 0.00 0.00 38.45 3.46
111 112 1.817357 TTGAAGCAGCTGGATGACTG 58.183 50.000 17.12 0.00 36.96 3.51
114 115 3.076079 TGAATTGAAGCAGCTGGATGA 57.924 42.857 17.12 0.00 0.00 2.92
116 117 4.877378 TTTTGAATTGAAGCAGCTGGAT 57.123 36.364 17.12 0.00 0.00 3.41
119 120 8.301730 TCTTTTATTTTGAATTGAAGCAGCTG 57.698 30.769 10.11 10.11 0.00 4.24
131 132 8.987890 GTTTGCAGGCTTATCTTTTATTTTGAA 58.012 29.630 0.00 0.00 0.00 2.69
145 146 3.317993 GGTGAAAAGAGTTTGCAGGCTTA 59.682 43.478 0.00 0.00 0.00 3.09
150 151 4.053295 CCATTGGTGAAAAGAGTTTGCAG 58.947 43.478 0.00 0.00 0.00 4.41
155 156 6.012113 TGATCATCCATTGGTGAAAAGAGTT 58.988 36.000 1.86 0.00 0.00 3.01
212 213 2.576191 AGGTTAACCAATGCCTGCTCTA 59.424 45.455 26.26 0.00 38.89 2.43
213 214 1.355720 AGGTTAACCAATGCCTGCTCT 59.644 47.619 26.26 0.00 38.89 4.09
214 215 1.839424 AGGTTAACCAATGCCTGCTC 58.161 50.000 26.26 0.00 38.89 4.26
215 216 2.309136 AAGGTTAACCAATGCCTGCT 57.691 45.000 26.26 0.00 38.89 4.24
216 217 4.736126 ATAAAGGTTAACCAATGCCTGC 57.264 40.909 26.26 0.00 38.89 4.85
217 218 8.311109 ACTAAAATAAAGGTTAACCAATGCCTG 58.689 33.333 26.26 10.56 38.89 4.85
267 269 7.965107 CAGTATTTTACAAAGTGAGAGGAATGC 59.035 37.037 0.00 0.00 0.00 3.56
268 270 9.003658 ACAGTATTTTACAAAGTGAGAGGAATG 57.996 33.333 0.00 0.00 0.00 2.67
304 306 8.154649 ACAACTGTTCTAAGGTAGTTTTCATG 57.845 34.615 0.00 0.00 31.47 3.07
323 325 2.032030 CCTGCAAACCGTAGAACAACTG 60.032 50.000 0.00 0.00 0.00 3.16
325 327 1.944709 ACCTGCAAACCGTAGAACAAC 59.055 47.619 0.00 0.00 0.00 3.32
358 360 8.144478 CGAAGGAGTAAGATAGATGATTGGAAA 58.856 37.037 0.00 0.00 0.00 3.13
398 404 6.348868 GGAGTAGAAAGGAAAACATGCAAGAG 60.349 42.308 0.00 0.00 0.00 2.85
404 410 4.944317 GGAGGGAGTAGAAAGGAAAACATG 59.056 45.833 0.00 0.00 0.00 3.21
414 420 3.967467 ATAGGACGGAGGGAGTAGAAA 57.033 47.619 0.00 0.00 0.00 2.52
420 426 7.094720 CGCTATTATATTATAGGACGGAGGGAG 60.095 44.444 10.04 0.00 0.00 4.30
422 428 6.489361 ACGCTATTATATTATAGGACGGAGGG 59.511 42.308 10.04 0.00 0.00 4.30
424 430 9.798994 AAAACGCTATTATATTATAGGACGGAG 57.201 33.333 10.04 0.00 0.00 4.63
442 448 6.702723 ACATTAGTGTAGTGTCAAAAACGCTA 59.297 34.615 0.00 0.00 46.85 4.26
443 449 6.511121 CACATTAGTGTAGTGTCAAAAACGCT 60.511 38.462 0.00 0.00 43.08 5.07
444 450 5.619607 CACATTAGTGTAGTGTCAAAAACGC 59.380 40.000 0.00 0.00 40.92 4.84
445 451 6.939627 TCACATTAGTGTAGTGTCAAAAACG 58.060 36.000 0.00 0.00 46.01 3.60
446 452 9.562583 TTTTCACATTAGTGTAGTGTCAAAAAC 57.437 29.630 0.00 0.00 46.01 2.43
449 455 9.729023 CATTTTTCACATTAGTGTAGTGTCAAA 57.271 29.630 0.00 0.00 46.01 2.69
450 456 7.860373 GCATTTTTCACATTAGTGTAGTGTCAA 59.140 33.333 0.00 0.00 46.01 3.18
451 457 7.228507 AGCATTTTTCACATTAGTGTAGTGTCA 59.771 33.333 0.00 0.00 46.01 3.58
452 458 7.584987 AGCATTTTTCACATTAGTGTAGTGTC 58.415 34.615 0.00 0.00 46.01 3.67
453 459 7.445402 AGAGCATTTTTCACATTAGTGTAGTGT 59.555 33.333 0.00 0.00 46.01 3.55
454 460 7.810658 AGAGCATTTTTCACATTAGTGTAGTG 58.189 34.615 0.00 0.00 46.01 2.74
455 461 7.986085 AGAGCATTTTTCACATTAGTGTAGT 57.014 32.000 0.00 0.00 46.01 2.73
490 496 9.699703 GGGATATACAGAAATACTCTCTTTGTC 57.300 37.037 0.00 0.00 29.07 3.18
491 497 8.361139 CGGGATATACAGAAATACTCTCTTTGT 58.639 37.037 0.00 0.00 29.07 2.83
492 498 7.329717 GCGGGATATACAGAAATACTCTCTTTG 59.670 40.741 0.00 0.00 29.07 2.77
493 499 7.379750 GCGGGATATACAGAAATACTCTCTTT 58.620 38.462 0.00 0.00 29.07 2.52
494 500 6.349445 CGCGGGATATACAGAAATACTCTCTT 60.349 42.308 0.00 0.00 29.07 2.85
495 501 5.124138 CGCGGGATATACAGAAATACTCTCT 59.876 44.000 0.00 0.00 29.07 3.10
496 502 5.333513 CGCGGGATATACAGAAATACTCTC 58.666 45.833 0.00 0.00 29.07 3.20
497 503 4.380655 GCGCGGGATATACAGAAATACTCT 60.381 45.833 8.83 0.00 33.23 3.24
498 504 3.858238 GCGCGGGATATACAGAAATACTC 59.142 47.826 8.83 0.00 0.00 2.59
499 505 3.368116 GGCGCGGGATATACAGAAATACT 60.368 47.826 8.83 0.00 0.00 2.12
500 506 2.928116 GGCGCGGGATATACAGAAATAC 59.072 50.000 8.83 0.00 0.00 1.89
501 507 2.416296 CGGCGCGGGATATACAGAAATA 60.416 50.000 8.83 0.00 0.00 1.40
502 508 1.671850 CGGCGCGGGATATACAGAAAT 60.672 52.381 8.83 0.00 0.00 2.17
503 509 0.319211 CGGCGCGGGATATACAGAAA 60.319 55.000 8.83 0.00 0.00 2.52
504 510 1.174078 TCGGCGCGGGATATACAGAA 61.174 55.000 15.48 0.00 0.00 3.02
505 511 1.174078 TTCGGCGCGGGATATACAGA 61.174 55.000 15.48 0.00 0.00 3.41
506 512 0.108804 ATTCGGCGCGGGATATACAG 60.109 55.000 15.48 0.00 0.00 2.74
507 513 1.175654 TATTCGGCGCGGGATATACA 58.824 50.000 15.48 0.00 0.00 2.29
508 514 2.190981 CTTATTCGGCGCGGGATATAC 58.809 52.381 15.89 0.00 0.00 1.47
509 515 1.470285 GCTTATTCGGCGCGGGATATA 60.470 52.381 15.89 8.54 0.00 0.86
510 516 0.739813 GCTTATTCGGCGCGGGATAT 60.740 55.000 15.89 9.40 0.00 1.63
538 544 0.892358 ACTAACCAGGACGCGACTGA 60.892 55.000 27.97 13.46 38.20 3.41
539 545 0.456312 GACTAACCAGGACGCGACTG 60.456 60.000 15.93 20.21 35.74 3.51
540 546 1.881602 GACTAACCAGGACGCGACT 59.118 57.895 15.93 7.85 0.00 4.18
541 547 1.513586 CGACTAACCAGGACGCGAC 60.514 63.158 15.93 6.56 0.00 5.19
542 548 1.968017 ACGACTAACCAGGACGCGA 60.968 57.895 15.93 0.00 31.90 5.87
543 549 1.800315 CACGACTAACCAGGACGCG 60.800 63.158 3.53 3.53 31.90 6.01
544 550 0.456312 CTCACGACTAACCAGGACGC 60.456 60.000 0.00 0.00 31.90 5.19
545 551 0.170561 CCTCACGACTAACCAGGACG 59.829 60.000 0.00 0.00 33.85 4.79
546 552 0.108756 GCCTCACGACTAACCAGGAC 60.109 60.000 0.00 0.00 0.00 3.85
548 554 1.218316 GGCCTCACGACTAACCAGG 59.782 63.158 0.00 0.00 0.00 4.45
549 555 1.218316 GGGCCTCACGACTAACCAG 59.782 63.158 0.84 0.00 0.00 4.00
550 556 1.229082 AGGGCCTCACGACTAACCA 60.229 57.895 0.00 0.00 0.00 3.67
551 557 1.218316 CAGGGCCTCACGACTAACC 59.782 63.158 0.95 0.00 0.00 2.85
552 558 1.218316 CCAGGGCCTCACGACTAAC 59.782 63.158 0.95 0.00 0.00 2.34
555 561 1.229082 TAACCAGGGCCTCACGACT 60.229 57.895 0.95 0.00 0.00 4.18
584 640 2.127118 CGCTCAAGCAAAGCCACG 60.127 61.111 2.50 0.00 42.21 4.94
651 714 2.746472 GCAGAGTGACCAGGTGAAAACT 60.746 50.000 0.00 0.00 0.00 2.66
673 736 0.748367 CATCCACCGAGACTCCGAGA 60.748 60.000 1.33 0.00 0.00 4.04
674 737 0.748367 TCATCCACCGAGACTCCGAG 60.748 60.000 0.00 0.00 0.00 4.63
675 738 0.748367 CTCATCCACCGAGACTCCGA 60.748 60.000 0.00 0.00 31.84 4.55
676 739 1.730487 CTCATCCACCGAGACTCCG 59.270 63.158 0.00 0.00 31.84 4.63
677 740 1.439644 GCTCATCCACCGAGACTCC 59.560 63.158 0.00 0.00 31.84 3.85
678 741 1.064946 CGCTCATCCACCGAGACTC 59.935 63.158 0.00 0.00 31.84 3.36
679 742 0.393944 TACGCTCATCCACCGAGACT 60.394 55.000 0.00 0.00 31.84 3.24
680 743 0.454600 TTACGCTCATCCACCGAGAC 59.545 55.000 0.00 0.00 31.84 3.36
724 787 3.381136 TGCCTTGCCATTTCGCCC 61.381 61.111 0.00 0.00 0.00 6.13
727 790 1.442520 CACGTGCCTTGCCATTTCG 60.443 57.895 0.82 0.00 0.00 3.46
728 791 1.734117 GCACGTGCCTTGCCATTTC 60.734 57.895 30.12 0.00 33.58 2.17
729 792 2.339712 GCACGTGCCTTGCCATTT 59.660 55.556 30.12 0.00 33.58 2.32
887 955 2.420722 GTCAGAGTAGAACGGGAGACTG 59.579 54.545 0.00 0.00 44.60 3.51
890 958 1.340795 GGGTCAGAGTAGAACGGGAGA 60.341 57.143 0.00 0.00 0.00 3.71
943 1011 2.438975 CGCTGACATGTGGGCCAT 60.439 61.111 10.70 0.00 0.00 4.40
1091 1159 1.736586 CCGTGCTCTATCGCCTCTT 59.263 57.895 0.00 0.00 0.00 2.85
1096 1164 2.336809 CCTCCCGTGCTCTATCGC 59.663 66.667 0.00 0.00 0.00 4.58
1298 1366 1.284657 CAGAACGGCTCTGTGCATAG 58.715 55.000 3.68 3.68 45.76 2.23
1309 1377 4.021925 AGGGGACAGCAGAACGGC 62.022 66.667 0.00 0.00 0.00 5.68
1310 1378 2.046892 CAGGGGACAGCAGAACGG 60.047 66.667 0.00 0.00 0.00 4.44
1337 1405 1.534235 AGTGAAGCCCGAGGTCAGT 60.534 57.895 0.00 0.00 0.00 3.41
1345 1413 3.429141 CAGCAGCAGTGAAGCCCG 61.429 66.667 0.00 0.00 34.23 6.13
1577 1645 1.287425 GACATCGATCGGTCAAACCC 58.713 55.000 16.41 0.00 33.75 4.11
1729 1797 3.612423 GCAAATCCAGTGTAAAAATCGGC 59.388 43.478 0.00 0.00 0.00 5.54
1733 1801 6.365789 CACAATCGCAAATCCAGTGTAAAAAT 59.634 34.615 0.00 0.00 0.00 1.82
1736 1804 4.793071 CACAATCGCAAATCCAGTGTAAA 58.207 39.130 0.00 0.00 0.00 2.01
1737 1805 3.365868 GCACAATCGCAAATCCAGTGTAA 60.366 43.478 0.00 0.00 0.00 2.41
1801 1869 9.661563 ATTTGTCATTTGCATCACTCAAATTAT 57.338 25.926 11.25 0.00 40.86 1.28
1803 1871 7.972832 ATTTGTCATTTGCATCACTCAAATT 57.027 28.000 11.25 0.00 40.86 1.82
1881 1949 9.618890 ACTATGCAAATTCAGCTAATTTCTAGA 57.381 29.630 0.00 0.00 44.27 2.43
1903 1971 0.032130 CCAGTACGCGGCATGACTAT 59.968 55.000 12.47 0.00 0.00 2.12
1904 1972 1.435925 CCAGTACGCGGCATGACTA 59.564 57.895 12.47 0.00 0.00 2.59
1929 2009 1.815421 CCTAGCCACGACCACATGC 60.815 63.158 0.00 0.00 0.00 4.06
2033 2123 4.861196 TCTAGATGAGAGTTAGCCACACT 58.139 43.478 0.00 0.00 0.00 3.55
2171 3392 0.846693 ACAGAAGGCCAACAGGAACT 59.153 50.000 5.01 0.00 43.88 3.01
2172 3393 1.609072 GAACAGAAGGCCAACAGGAAC 59.391 52.381 5.01 0.00 0.00 3.62
2173 3394 1.478654 GGAACAGAAGGCCAACAGGAA 60.479 52.381 5.01 0.00 0.00 3.36
2174 3395 0.110486 GGAACAGAAGGCCAACAGGA 59.890 55.000 5.01 0.00 0.00 3.86
2175 3396 0.111253 AGGAACAGAAGGCCAACAGG 59.889 55.000 5.01 0.00 0.00 4.00
2176 3397 1.986882 AAGGAACAGAAGGCCAACAG 58.013 50.000 5.01 0.00 0.00 3.16
2177 3398 2.430332 CAAAAGGAACAGAAGGCCAACA 59.570 45.455 5.01 0.00 0.00 3.33
2178 3399 2.430694 ACAAAAGGAACAGAAGGCCAAC 59.569 45.455 5.01 0.00 0.00 3.77
2179 3400 2.745968 ACAAAAGGAACAGAAGGCCAA 58.254 42.857 5.01 0.00 0.00 4.52
2180 3401 2.452600 ACAAAAGGAACAGAAGGCCA 57.547 45.000 5.01 0.00 0.00 5.36
2181 3402 3.819564 AAACAAAAGGAACAGAAGGCC 57.180 42.857 0.00 0.00 0.00 5.19
2182 3403 3.871006 CCAAAACAAAAGGAACAGAAGGC 59.129 43.478 0.00 0.00 0.00 4.35
2183 3404 4.441792 CCCAAAACAAAAGGAACAGAAGG 58.558 43.478 0.00 0.00 0.00 3.46
2184 3405 3.871006 GCCCAAAACAAAAGGAACAGAAG 59.129 43.478 0.00 0.00 0.00 2.85
2185 3406 3.517500 AGCCCAAAACAAAAGGAACAGAA 59.482 39.130 0.00 0.00 0.00 3.02
2186 3407 3.103742 AGCCCAAAACAAAAGGAACAGA 58.896 40.909 0.00 0.00 0.00 3.41
2187 3408 3.197265 CAGCCCAAAACAAAAGGAACAG 58.803 45.455 0.00 0.00 0.00 3.16
2188 3409 2.569404 ACAGCCCAAAACAAAAGGAACA 59.431 40.909 0.00 0.00 0.00 3.18
2189 3410 3.260475 ACAGCCCAAAACAAAAGGAAC 57.740 42.857 0.00 0.00 0.00 3.62
2190 3411 5.622346 ATTACAGCCCAAAACAAAAGGAA 57.378 34.783 0.00 0.00 0.00 3.36
2191 3412 6.732896 TTATTACAGCCCAAAACAAAAGGA 57.267 33.333 0.00 0.00 0.00 3.36
2192 3413 7.977789 AATTATTACAGCCCAAAACAAAAGG 57.022 32.000 0.00 0.00 0.00 3.11
2193 3414 9.921637 TCTAATTATTACAGCCCAAAACAAAAG 57.078 29.630 0.00 0.00 0.00 2.27
2194 3415 9.699703 GTCTAATTATTACAGCCCAAAACAAAA 57.300 29.630 0.00 0.00 0.00 2.44
2195 3416 9.084533 AGTCTAATTATTACAGCCCAAAACAAA 57.915 29.630 0.00 0.00 0.00 2.83
2196 3417 8.644374 AGTCTAATTATTACAGCCCAAAACAA 57.356 30.769 0.00 0.00 0.00 2.83
2197 3418 8.644374 AAGTCTAATTATTACAGCCCAAAACA 57.356 30.769 0.00 0.00 0.00 2.83
2199 3420 8.899771 GCTAAGTCTAATTATTACAGCCCAAAA 58.100 33.333 0.00 0.00 0.00 2.44
2200 3421 8.272173 AGCTAAGTCTAATTATTACAGCCCAAA 58.728 33.333 0.00 0.00 0.00 3.28
2201 3422 7.802117 AGCTAAGTCTAATTATTACAGCCCAA 58.198 34.615 0.00 0.00 0.00 4.12
2202 3423 7.290248 AGAGCTAAGTCTAATTATTACAGCCCA 59.710 37.037 0.00 0.00 0.00 5.36
2203 3424 7.600752 CAGAGCTAAGTCTAATTATTACAGCCC 59.399 40.741 0.00 0.00 0.00 5.19
2204 3425 8.361139 TCAGAGCTAAGTCTAATTATTACAGCC 58.639 37.037 0.00 0.00 0.00 4.85
2205 3426 9.405587 CTCAGAGCTAAGTCTAATTATTACAGC 57.594 37.037 0.00 0.00 0.00 4.40
2211 3432 9.979578 CAACATCTCAGAGCTAAGTCTAATTAT 57.020 33.333 0.00 0.00 0.00 1.28
2212 3433 9.190317 TCAACATCTCAGAGCTAAGTCTAATTA 57.810 33.333 0.00 0.00 0.00 1.40
2213 3434 8.072321 TCAACATCTCAGAGCTAAGTCTAATT 57.928 34.615 0.00 0.00 0.00 1.40
2214 3435 7.341769 ACTCAACATCTCAGAGCTAAGTCTAAT 59.658 37.037 0.00 0.00 32.71 1.73
2215 3436 6.661377 ACTCAACATCTCAGAGCTAAGTCTAA 59.339 38.462 0.00 0.00 32.71 2.10
2216 3437 6.184068 ACTCAACATCTCAGAGCTAAGTCTA 58.816 40.000 0.00 0.00 32.71 2.59
2217 3438 5.016173 ACTCAACATCTCAGAGCTAAGTCT 58.984 41.667 0.00 0.00 32.71 3.24
2218 3439 5.323371 ACTCAACATCTCAGAGCTAAGTC 57.677 43.478 0.00 0.00 32.71 3.01
2219 3440 5.011533 ACAACTCAACATCTCAGAGCTAAGT 59.988 40.000 0.00 0.00 32.71 2.24
2220 3441 5.348179 CACAACTCAACATCTCAGAGCTAAG 59.652 44.000 0.00 0.00 32.71 2.18
2221 3442 5.233225 CACAACTCAACATCTCAGAGCTAA 58.767 41.667 0.00 0.00 32.71 3.09
2222 3443 4.814147 CACAACTCAACATCTCAGAGCTA 58.186 43.478 0.00 0.00 32.71 3.32
2223 3444 3.661944 CACAACTCAACATCTCAGAGCT 58.338 45.455 0.00 0.00 32.71 4.09
2224 3445 2.159234 GCACAACTCAACATCTCAGAGC 59.841 50.000 0.00 0.00 32.71 4.09
2225 3446 3.432592 CAGCACAACTCAACATCTCAGAG 59.567 47.826 0.00 0.00 35.56 3.35
2226 3447 3.396560 CAGCACAACTCAACATCTCAGA 58.603 45.455 0.00 0.00 0.00 3.27
2227 3448 2.095869 GCAGCACAACTCAACATCTCAG 60.096 50.000 0.00 0.00 0.00 3.35
2228 3449 1.875514 GCAGCACAACTCAACATCTCA 59.124 47.619 0.00 0.00 0.00 3.27
2229 3450 2.149578 AGCAGCACAACTCAACATCTC 58.850 47.619 0.00 0.00 0.00 2.75
2230 3451 2.149578 GAGCAGCACAACTCAACATCT 58.850 47.619 0.00 0.00 32.98 2.90
2231 3452 1.875514 TGAGCAGCACAACTCAACATC 59.124 47.619 0.00 0.00 39.89 3.06
2232 3453 1.878088 CTGAGCAGCACAACTCAACAT 59.122 47.619 0.00 0.00 42.12 2.71
2233 3454 1.302366 CTGAGCAGCACAACTCAACA 58.698 50.000 0.00 0.00 42.12 3.33
2234 3455 0.590195 CCTGAGCAGCACAACTCAAC 59.410 55.000 0.00 0.00 42.12 3.18
2235 3456 0.181114 ACCTGAGCAGCACAACTCAA 59.819 50.000 0.00 0.00 42.12 3.02
2236 3457 0.181114 AACCTGAGCAGCACAACTCA 59.819 50.000 0.00 0.00 40.54 3.41
2237 3458 1.312815 AAACCTGAGCAGCACAACTC 58.687 50.000 0.00 0.00 0.00 3.01
2238 3459 1.678101 GAAAACCTGAGCAGCACAACT 59.322 47.619 0.00 0.00 0.00 3.16
2239 3460 1.597937 CGAAAACCTGAGCAGCACAAC 60.598 52.381 0.00 0.00 0.00 3.32
2240 3461 0.662619 CGAAAACCTGAGCAGCACAA 59.337 50.000 0.00 0.00 0.00 3.33
2241 3462 1.785041 GCGAAAACCTGAGCAGCACA 61.785 55.000 0.00 0.00 0.00 4.57
2242 3463 1.081840 GCGAAAACCTGAGCAGCAC 60.082 57.895 0.00 0.00 0.00 4.40
2243 3464 2.260869 GGCGAAAACCTGAGCAGCA 61.261 57.895 0.00 0.00 0.00 4.41
2244 3465 2.563427 GGCGAAAACCTGAGCAGC 59.437 61.111 0.00 0.00 0.00 5.25
2245 3466 2.335712 GGGGCGAAAACCTGAGCAG 61.336 63.158 0.00 0.00 0.00 4.24
2246 3467 2.282180 GGGGCGAAAACCTGAGCA 60.282 61.111 0.00 0.00 0.00 4.26
2247 3468 1.678970 ATGGGGCGAAAACCTGAGC 60.679 57.895 0.00 0.00 0.00 4.26
2248 3469 1.315257 CCATGGGGCGAAAACCTGAG 61.315 60.000 2.85 0.00 0.00 3.35
2249 3470 1.304052 CCATGGGGCGAAAACCTGA 60.304 57.895 2.85 0.00 0.00 3.86
2250 3471 3.287445 CCATGGGGCGAAAACCTG 58.713 61.111 2.85 0.00 0.00 4.00
2260 3481 2.511600 GAGACGAACGCCATGGGG 60.512 66.667 26.22 26.22 37.18 4.96
2261 3482 2.885644 CGAGACGAACGCCATGGG 60.886 66.667 15.13 6.26 0.00 4.00
2262 3483 2.158959 GTCGAGACGAACGCCATGG 61.159 63.158 7.63 7.63 37.72 3.66
2263 3484 3.374330 GTCGAGACGAACGCCATG 58.626 61.111 0.00 0.00 37.72 3.66
2273 3494 4.415332 TTCGCCTGCCGTCGAGAC 62.415 66.667 0.00 0.00 38.35 3.36
2274 3495 4.415332 GTTCGCCTGCCGTCGAGA 62.415 66.667 0.00 0.00 38.35 4.04
2283 3504 4.988598 ACCCACTGCGTTCGCCTG 62.989 66.667 14.44 9.35 0.00 4.85
2284 3505 2.386064 TAAACCCACTGCGTTCGCCT 62.386 55.000 14.44 0.00 0.00 5.52
2285 3506 1.962306 TAAACCCACTGCGTTCGCC 60.962 57.895 14.44 0.00 0.00 5.54
2286 3507 1.205820 GTAAACCCACTGCGTTCGC 59.794 57.895 10.34 10.34 0.00 4.70
2287 3508 0.511221 CAGTAAACCCACTGCGTTCG 59.489 55.000 0.00 0.00 39.54 3.95
2288 3509 0.872388 CCAGTAAACCCACTGCGTTC 59.128 55.000 0.00 0.00 43.82 3.95
2289 3510 1.170290 GCCAGTAAACCCACTGCGTT 61.170 55.000 0.00 0.00 43.82 4.84
2290 3511 1.599797 GCCAGTAAACCCACTGCGT 60.600 57.895 0.00 0.00 43.82 5.24
2291 3512 1.577328 CTGCCAGTAAACCCACTGCG 61.577 60.000 0.00 0.00 43.82 5.18
2292 3513 0.537371 ACTGCCAGTAAACCCACTGC 60.537 55.000 0.00 0.00 43.82 4.40
2293 3514 1.238439 CACTGCCAGTAAACCCACTG 58.762 55.000 0.00 0.00 44.60 3.66
2294 3515 0.537371 GCACTGCCAGTAAACCCACT 60.537 55.000 0.00 0.00 0.00 4.00
2295 3516 0.537371 AGCACTGCCAGTAAACCCAC 60.537 55.000 0.00 0.00 0.00 4.61
2296 3517 0.250727 GAGCACTGCCAGTAAACCCA 60.251 55.000 0.00 0.00 0.00 4.51
2297 3518 1.298859 CGAGCACTGCCAGTAAACCC 61.299 60.000 0.00 0.00 0.00 4.11
2298 3519 0.320421 TCGAGCACTGCCAGTAAACC 60.320 55.000 0.00 0.00 0.00 3.27
2299 3520 1.194772 GTTCGAGCACTGCCAGTAAAC 59.805 52.381 0.00 0.00 0.00 2.01
2300 3521 1.070134 AGTTCGAGCACTGCCAGTAAA 59.930 47.619 0.00 0.00 0.00 2.01
2301 3522 0.679505 AGTTCGAGCACTGCCAGTAA 59.320 50.000 0.00 0.00 0.00 2.24
2302 3523 0.679505 AAGTTCGAGCACTGCCAGTA 59.320 50.000 0.00 0.00 0.00 2.74
2303 3524 0.882042 CAAGTTCGAGCACTGCCAGT 60.882 55.000 1.01 0.00 0.00 4.00
2304 3525 1.864862 CAAGTTCGAGCACTGCCAG 59.135 57.895 1.01 0.00 0.00 4.85
2305 3526 2.253758 GCAAGTTCGAGCACTGCCA 61.254 57.895 13.18 0.00 0.00 4.92
2306 3527 1.510480 AAGCAAGTTCGAGCACTGCC 61.510 55.000 18.34 5.61 0.00 4.85
2307 3528 0.308993 AAAGCAAGTTCGAGCACTGC 59.691 50.000 15.48 15.48 0.00 4.40
2308 3529 2.096218 GGTAAAGCAAGTTCGAGCACTG 60.096 50.000 1.01 0.00 0.00 3.66
2309 3530 2.143925 GGTAAAGCAAGTTCGAGCACT 58.856 47.619 1.01 0.00 0.00 4.40
2310 3531 2.143925 AGGTAAAGCAAGTTCGAGCAC 58.856 47.619 1.01 0.00 0.00 4.40
2311 3532 2.037251 AGAGGTAAAGCAAGTTCGAGCA 59.963 45.455 1.01 0.00 0.00 4.26
2312 3533 2.689646 AGAGGTAAAGCAAGTTCGAGC 58.310 47.619 0.00 0.00 0.00 5.03
2313 3534 3.680458 GGAAGAGGTAAAGCAAGTTCGAG 59.320 47.826 0.00 0.00 0.00 4.04
2314 3535 3.556423 GGGAAGAGGTAAAGCAAGTTCGA 60.556 47.826 0.00 0.00 0.00 3.71
2315 3536 2.742589 GGGAAGAGGTAAAGCAAGTTCG 59.257 50.000 0.00 0.00 0.00 3.95
2316 3537 3.082548 GGGGAAGAGGTAAAGCAAGTTC 58.917 50.000 0.00 0.00 0.00 3.01
2317 3538 2.225041 GGGGGAAGAGGTAAAGCAAGTT 60.225 50.000 0.00 0.00 0.00 2.66
2318 3539 1.354705 GGGGGAAGAGGTAAAGCAAGT 59.645 52.381 0.00 0.00 0.00 3.16
2319 3540 2.130272 GGGGGAAGAGGTAAAGCAAG 57.870 55.000 0.00 0.00 0.00 4.01
2335 3556 2.450476 CAGAAACATTTCAGGAGGGGG 58.550 52.381 7.10 0.00 39.61 5.40
2336 3557 2.041620 TCCAGAAACATTTCAGGAGGGG 59.958 50.000 12.94 2.89 44.66 4.79
2337 3558 3.439857 TCCAGAAACATTTCAGGAGGG 57.560 47.619 12.94 4.31 44.66 4.30
2340 3561 4.792068 ACAGTTCCAGAAACATTTCAGGA 58.208 39.130 12.94 12.94 46.84 3.86
2341 3562 5.163519 ACAACAGTTCCAGAAACATTTCAGG 60.164 40.000 9.01 9.01 43.04 3.86
2342 3563 5.894807 ACAACAGTTCCAGAAACATTTCAG 58.105 37.500 7.10 0.00 40.56 3.02
2343 3564 5.913137 ACAACAGTTCCAGAAACATTTCA 57.087 34.783 7.10 0.00 40.56 2.69
2344 3565 8.871686 AAATACAACAGTTCCAGAAACATTTC 57.128 30.769 0.00 0.00 40.56 2.17
2345 3566 8.871686 GAAATACAACAGTTCCAGAAACATTT 57.128 30.769 0.00 0.00 40.56 2.32
2355 3576 5.622770 ATGAACGGAAATACAACAGTTCC 57.377 39.130 0.00 0.00 45.97 3.62
2356 3577 6.129194 GCAAATGAACGGAAATACAACAGTTC 60.129 38.462 0.00 0.00 39.96 3.01
2357 3578 5.689961 GCAAATGAACGGAAATACAACAGTT 59.310 36.000 0.00 0.00 0.00 3.16
2358 3579 5.219633 GCAAATGAACGGAAATACAACAGT 58.780 37.500 0.00 0.00 0.00 3.55
2359 3580 5.218885 TGCAAATGAACGGAAATACAACAG 58.781 37.500 0.00 0.00 0.00 3.16
2360 3581 5.188327 TGCAAATGAACGGAAATACAACA 57.812 34.783 0.00 0.00 0.00 3.33
2361 3582 6.452350 CGATTGCAAATGAACGGAAATACAAC 60.452 38.462 1.71 0.00 0.00 3.32
2362 3583 5.570973 CGATTGCAAATGAACGGAAATACAA 59.429 36.000 1.71 0.00 0.00 2.41
2363 3584 5.092105 CGATTGCAAATGAACGGAAATACA 58.908 37.500 1.71 0.00 0.00 2.29
2364 3585 4.499040 CCGATTGCAAATGAACGGAAATAC 59.501 41.667 19.60 0.00 42.40 1.89
2365 3586 4.156922 ACCGATTGCAAATGAACGGAAATA 59.843 37.500 26.13 0.00 42.40 1.40
2366 3587 3.056891 ACCGATTGCAAATGAACGGAAAT 60.057 39.130 26.13 11.15 42.40 2.17
2367 3588 2.294791 ACCGATTGCAAATGAACGGAAA 59.705 40.909 26.13 0.00 42.40 3.13
2368 3589 1.883275 ACCGATTGCAAATGAACGGAA 59.117 42.857 26.13 0.00 42.40 4.30
2369 3590 1.529226 ACCGATTGCAAATGAACGGA 58.471 45.000 26.13 0.00 42.40 4.69
2370 3591 2.250188 GAACCGATTGCAAATGAACGG 58.750 47.619 21.33 21.33 44.77 4.44
2371 3592 2.910482 CTGAACCGATTGCAAATGAACG 59.090 45.455 1.71 4.90 0.00 3.95
2372 3593 2.663119 GCTGAACCGATTGCAAATGAAC 59.337 45.455 1.71 0.00 0.00 3.18
2373 3594 2.352617 GGCTGAACCGATTGCAAATGAA 60.353 45.455 1.71 0.00 0.00 2.57
2374 3595 1.202114 GGCTGAACCGATTGCAAATGA 59.798 47.619 1.71 0.00 0.00 2.57
2375 3596 1.632422 GGCTGAACCGATTGCAAATG 58.368 50.000 1.71 0.00 0.00 2.32
2376 3597 0.532115 GGGCTGAACCGATTGCAAAT 59.468 50.000 1.71 0.00 40.62 2.32
2377 3598 1.963679 GGGCTGAACCGATTGCAAA 59.036 52.632 1.71 0.00 40.62 3.68
2378 3599 3.680156 GGGCTGAACCGATTGCAA 58.320 55.556 0.00 0.00 40.62 4.08
2386 3607 1.167781 TTTTCGAACCGGGCTGAACC 61.168 55.000 6.32 0.00 37.93 3.62
2387 3608 0.664224 TTTTTCGAACCGGGCTGAAC 59.336 50.000 6.32 0.00 0.00 3.18
2388 3609 3.097461 TTTTTCGAACCGGGCTGAA 57.903 47.368 6.32 3.07 0.00 3.02
2389 3610 4.881057 TTTTTCGAACCGGGCTGA 57.119 50.000 6.32 0.00 0.00 4.26
2405 3626 9.748100 CAAAAATACACTTGCGTTTTACTTTTT 57.252 25.926 0.00 0.00 0.00 1.94
2406 3627 7.900864 GCAAAAATACACTTGCGTTTTACTTTT 59.099 29.630 0.00 0.00 38.66 2.27
2407 3628 7.395645 GCAAAAATACACTTGCGTTTTACTTT 58.604 30.769 0.00 0.00 38.66 2.66
2408 3629 6.928820 GCAAAAATACACTTGCGTTTTACTT 58.071 32.000 0.00 0.00 38.66 2.24
2409 3630 6.505039 GCAAAAATACACTTGCGTTTTACT 57.495 33.333 0.00 0.00 38.66 2.24
2417 3638 5.289434 GGATTAGCAGCAAAAATACACTTGC 59.711 40.000 0.00 0.00 46.68 4.01
2418 3639 6.389091 TGGATTAGCAGCAAAAATACACTTG 58.611 36.000 0.00 0.00 0.00 3.16
2419 3640 6.588719 TGGATTAGCAGCAAAAATACACTT 57.411 33.333 0.00 0.00 0.00 3.16
2420 3641 6.209391 AGTTGGATTAGCAGCAAAAATACACT 59.791 34.615 0.00 0.00 0.00 3.55
2428 3649 5.049167 CACAAAAGTTGGATTAGCAGCAAA 58.951 37.500 0.00 0.00 34.12 3.68
2486 3707 0.768221 ATGGTGTGGGAGTCAGTGGT 60.768 55.000 0.00 0.00 0.00 4.16
2546 3767 9.383519 GTCACATCTAACTCCTAAATCATTTGA 57.616 33.333 0.00 0.00 0.00 2.69
2663 3906 7.939588 AGGCAAACTTAGAATATCCAGTTATCC 59.060 37.037 0.00 0.00 0.00 2.59
2664 3907 8.910351 AGGCAAACTTAGAATATCCAGTTATC 57.090 34.615 0.00 0.00 0.00 1.75
2665 3908 9.780186 GTAGGCAAACTTAGAATATCCAGTTAT 57.220 33.333 0.00 0.00 0.00 1.89
2666 3909 8.989131 AGTAGGCAAACTTAGAATATCCAGTTA 58.011 33.333 0.00 0.00 0.00 2.24
2667 3910 7.862675 AGTAGGCAAACTTAGAATATCCAGTT 58.137 34.615 0.00 0.00 0.00 3.16
2668 3911 7.419172 GGAGTAGGCAAACTTAGAATATCCAGT 60.419 40.741 0.00 0.00 0.00 4.00
2669 3912 6.931840 GGAGTAGGCAAACTTAGAATATCCAG 59.068 42.308 0.00 0.00 0.00 3.86
2670 3913 6.615726 AGGAGTAGGCAAACTTAGAATATCCA 59.384 38.462 0.00 0.00 0.00 3.41
2745 3988 5.723295 CAATGCAAGCCTAGGTAATTTTGT 58.277 37.500 11.31 0.00 0.00 2.83
2829 4072 8.421249 TCACCACATTAGGAAAATTCATTTCT 57.579 30.769 1.47 0.00 45.57 2.52
2944 4187 8.903820 ACTTCATTCTATGGCTTATAAACCAAC 58.096 33.333 11.53 0.00 39.96 3.77
3079 4324 4.021368 TGGCAAGAGTTCAGTACCTTACTC 60.021 45.833 9.62 9.62 36.76 2.59
3086 4331 3.467803 ACACTTGGCAAGAGTTCAGTAC 58.532 45.455 32.50 0.00 0.00 2.73
3264 4509 5.699001 ACGAGATGTTTGTAAGCATGTTACA 59.301 36.000 13.46 13.46 33.51 2.41
3313 4558 6.365839 GTGTGTTTGTGATATTGAGTGAGTG 58.634 40.000 0.00 0.00 0.00 3.51
3558 4803 6.436843 AAATAATACCAAGCGGAGAAACAG 57.563 37.500 0.00 0.00 35.59 3.16
3641 5215 9.108284 CCTTAACTTGGTACTCTACTACTCTAC 57.892 40.741 0.00 0.00 0.00 2.59
4307 5881 4.263331 CCTGGCTACTAACTCCAAAAGGAA 60.263 45.833 0.00 0.00 0.00 3.36
4343 5917 1.577468 CGATGCATACGGCCACTTTA 58.423 50.000 2.24 0.00 43.89 1.85
4344 5918 1.714899 GCGATGCATACGGCCACTTT 61.715 55.000 16.56 0.00 43.89 2.66
4345 5919 2.180204 GCGATGCATACGGCCACTT 61.180 57.895 16.56 0.00 43.89 3.16
4359 5933 2.827423 CCTCTGCATCTGGGCGAT 59.173 61.111 0.00 0.00 36.28 4.58
4360 5934 4.166888 GCCTCTGCATCTGGGCGA 62.167 66.667 0.00 0.00 37.47 5.54
4363 5937 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
4364 5938 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
4365 5939 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
4371 5945 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
4377 5951 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
4378 5952 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
4379 5953 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
4380 5954 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
4402 5976 3.096092 TCGGCAAATGGGCTCTATTTTT 58.904 40.909 0.00 0.00 40.61 1.94
4403 5977 2.427095 GTCGGCAAATGGGCTCTATTTT 59.573 45.455 0.00 0.00 40.61 1.82
4404 5978 2.024414 GTCGGCAAATGGGCTCTATTT 58.976 47.619 0.00 0.00 40.61 1.40
4405 5979 1.680338 GTCGGCAAATGGGCTCTATT 58.320 50.000 0.00 0.00 40.61 1.73
4421 5995 0.725784 GCAAGCACGTCAAATGGTCG 60.726 55.000 0.00 0.00 0.00 4.79
4423 5997 0.961019 ATGCAAGCACGTCAAATGGT 59.039 45.000 0.00 0.00 0.00 3.55
4477 6051 5.005740 ACATGCAAGAAACAGAAGCATCTA 58.994 37.500 0.00 0.00 43.43 1.98
4479 6053 4.170292 ACATGCAAGAAACAGAAGCATC 57.830 40.909 0.00 0.00 43.43 3.91
4666 6242 4.368808 CGGTGCAACGGCTTCACG 62.369 66.667 18.51 0.00 41.91 4.35
4772 6353 6.996509 AGCTGGTGAAATGTACATGAAAAAT 58.003 32.000 9.63 0.00 0.00 1.82
4901 6486 7.703058 ATTTATGCTAACAAGGTTAAGTGCT 57.297 32.000 0.00 0.00 0.00 4.40
4961 6546 3.650647 CCTCCAGCAGGCTACAAAA 57.349 52.632 0.00 0.00 34.56 2.44
5103 6688 1.732077 GCTGAGCTCAGAGACTTGTCG 60.732 57.143 41.20 16.72 46.59 4.35
5208 6793 2.281761 CTGCTTTCGCCACCAGGT 60.282 61.111 0.00 0.00 37.19 4.00
5268 6853 2.098607 TGAAATGAGGACGTACTAGCCG 59.901 50.000 0.00 1.20 0.00 5.52
5278 6863 2.626840 GAGAGCACCTGAAATGAGGAC 58.373 52.381 0.00 0.00 36.51 3.85
5320 6914 8.403236 CAACATAATTCAGATCTCAAAGCATCA 58.597 33.333 0.00 0.00 0.00 3.07
5410 7004 1.931841 CAAGGATGAGATCACGCACAG 59.068 52.381 0.00 0.00 0.00 3.66
5412 7006 2.015736 ACAAGGATGAGATCACGCAC 57.984 50.000 0.00 0.00 0.00 5.34
5553 7147 2.795329 ACCACAAGAATTCCGCTGAAT 58.205 42.857 0.65 0.00 43.08 2.57
5585 7179 4.933400 GGTTAATACAGCGAGAAGGTTTCA 59.067 41.667 0.00 0.00 0.00 2.69
5586 7180 5.176592 AGGTTAATACAGCGAGAAGGTTTC 58.823 41.667 0.00 0.00 0.00 2.78
5751 7787 1.108776 CAAATACTGCATGCCAGGCT 58.891 50.000 16.68 0.00 46.14 4.58
5862 7898 5.233988 GGAGTCAATCATACTGCATACTCC 58.766 45.833 0.00 0.00 43.44 3.85
5863 7899 5.847304 TGGAGTCAATCATACTGCATACTC 58.153 41.667 0.00 0.00 39.94 2.59
5864 7900 5.876651 TGGAGTCAATCATACTGCATACT 57.123 39.130 0.00 0.00 39.94 2.12
5895 7931 0.323360 CACACGACCCCCATTTCCAT 60.323 55.000 0.00 0.00 0.00 3.41
5927 7982 3.258372 TCAACGTTCTATTCCACAGAGCT 59.742 43.478 0.00 0.00 0.00 4.09
5931 7986 6.147821 ACTTGAATCAACGTTCTATTCCACAG 59.852 38.462 21.54 17.77 0.00 3.66
5947 8003 3.072330 TGGTGCTTCCTACACTTGAATCA 59.928 43.478 0.00 0.00 38.14 2.57
6005 8072 4.617995 CGCATGCCTTTCATCTTAAAACCA 60.618 41.667 13.15 0.00 31.79 3.67
6052 8122 3.391506 AAATTCCAGCTGCTTTTCCAC 57.608 42.857 8.66 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.