Multiple sequence alignment - TraesCS2A01G341100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G341100 chr2A 100.000 3908 0 0 1 3908 576662616 576666523 0.000000e+00 7217.0
1 TraesCS2A01G341100 chr2A 93.201 809 45 6 2249 3055 92833017 92833817 0.000000e+00 1181.0
2 TraesCS2A01G341100 chr2A 96.226 530 19 1 104 632 475494620 475494091 0.000000e+00 867.0
3 TraesCS2A01G341100 chr2A 91.254 343 24 2 3045 3382 274086912 274087253 2.750000e-126 462.0
4 TraesCS2A01G341100 chr2A 95.337 193 9 0 1199 1391 714801913 714801721 1.360000e-79 307.0
5 TraesCS2A01G341100 chr2A 92.268 194 12 1 988 1178 5147772 5147965 4.980000e-69 272.0
6 TraesCS2A01G341100 chr2A 94.949 99 4 1 661 758 576663238 576663336 1.880000e-33 154.0
7 TraesCS2A01G341100 chr2A 94.949 99 4 1 623 721 576663276 576663373 1.880000e-33 154.0
8 TraesCS2A01G341100 chr2A 91.803 61 4 1 699 758 576663238 576663298 2.500000e-12 84.2
9 TraesCS2A01G341100 chr2A 91.803 61 4 1 623 683 576663314 576663373 2.500000e-12 84.2
10 TraesCS2A01G341100 chr2A 96.875 32 0 1 728 758 576663229 576663260 7.000000e-03 52.8
11 TraesCS2A01G341100 chr6B 92.246 993 42 14 1122 2105 76449662 76448696 0.000000e+00 1375.0
12 TraesCS2A01G341100 chr6B 92.822 808 50 5 2249 3055 695977161 695977961 0.000000e+00 1164.0
13 TraesCS2A01G341100 chr6B 95.146 103 4 1 798 900 272620524 272620423 1.120000e-35 161.0
14 TraesCS2A01G341100 chr6B 94.898 98 3 1 2107 2202 76448605 76448508 6.760000e-33 152.0
15 TraesCS2A01G341100 chr6B 93.878 98 6 0 2103 2200 695977071 695977168 8.750000e-32 148.0
16 TraesCS2A01G341100 chr3A 91.501 953 50 8 2103 3055 532011873 532012794 0.000000e+00 1282.0
17 TraesCS2A01G341100 chr3A 97.082 514 14 1 122 634 494368545 494369058 0.000000e+00 865.0
18 TraesCS2A01G341100 chr3A 89.944 537 30 7 3043 3555 654992115 654992651 0.000000e+00 671.0
19 TraesCS2A01G341100 chr3A 96.117 103 3 1 798 900 354908470 354908571 2.420000e-37 167.0
20 TraesCS2A01G341100 chr5B 92.946 808 49 4 2249 3055 673472881 673473681 0.000000e+00 1170.0
21 TraesCS2A01G341100 chr5B 92.574 808 52 4 2249 3055 47275960 47276760 0.000000e+00 1153.0
22 TraesCS2A01G341100 chr5B 93.544 728 35 9 1384 2105 515116754 515116033 0.000000e+00 1074.0
23 TraesCS2A01G341100 chr5B 92.339 731 37 9 1381 2105 655868991 655869708 0.000000e+00 1022.0
24 TraesCS2A01G341100 chr3B 92.946 808 49 4 2249 3055 706294755 706293955 0.000000e+00 1170.0
25 TraesCS2A01G341100 chr3B 92.822 808 50 4 2249 3055 706751338 706752138 0.000000e+00 1164.0
26 TraesCS2A01G341100 chr3B 93.407 728 37 8 1384 2105 706295649 706294927 0.000000e+00 1068.0
27 TraesCS2A01G341100 chr3B 92.339 731 37 9 1381 2105 706750449 706751166 0.000000e+00 1022.0
28 TraesCS2A01G341100 chr3B 96.033 605 23 1 29 632 47159486 47160090 0.000000e+00 983.0
29 TraesCS2A01G341100 chr3B 92.600 527 24 8 1586 2105 61777526 61778044 0.000000e+00 743.0
30 TraesCS2A01G341100 chr3B 85.185 270 10 4 2122 2391 757906907 757907146 2.330000e-62 250.0
31 TraesCS2A01G341100 chr4B 92.698 808 51 4 2249 3055 650591775 650592575 0.000000e+00 1158.0
32 TraesCS2A01G341100 chr4B 92.985 613 29 10 1500 2105 650590998 650591603 0.000000e+00 881.0
33 TraesCS2A01G341100 chr4B 92.814 501 32 2 895 1391 144287115 144287615 0.000000e+00 723.0
34 TraesCS2A01G341100 chr4B 96.117 103 3 1 798 900 144286874 144286975 2.420000e-37 167.0
35 TraesCS2A01G341100 chr4B 93.878 98 6 0 2103 2200 650591685 650591782 8.750000e-32 148.0
36 TraesCS2A01G341100 chr2B 92.698 808 51 4 2249 3055 270836219 270837019 0.000000e+00 1158.0
37 TraesCS2A01G341100 chr2B 92.582 728 39 8 1384 2105 109345719 109345001 0.000000e+00 1031.0
38 TraesCS2A01G341100 chr2B 92.170 728 42 9 1384 2105 24799950 24799232 0.000000e+00 1014.0
39 TraesCS2A01G341100 chr2B 87.500 536 43 10 3045 3556 8264345 8264880 7.230000e-167 597.0
40 TraesCS2A01G341100 chr2B 94.898 98 5 0 2103 2200 109344919 109344822 1.880000e-33 154.0
41 TraesCS2A01G341100 chr4A 92.476 731 36 9 1381 2105 664675866 664676583 0.000000e+00 1027.0
42 TraesCS2A01G341100 chr4A 91.650 503 36 3 895 1391 519260585 519260083 0.000000e+00 691.0
43 TraesCS2A01G341100 chr4A 88.542 288 29 2 895 1178 551493728 551493441 2.890000e-91 346.0
44 TraesCS2A01G341100 chr4A 92.784 194 11 1 988 1178 238128839 238128646 1.070000e-70 278.0
45 TraesCS2A01G341100 chr4A 92.268 194 12 1 988 1178 534920 534727 4.980000e-69 272.0
46 TraesCS2A01G341100 chr1B 92.582 728 35 9 1384 2105 78834098 78833384 0.000000e+00 1027.0
47 TraesCS2A01G341100 chr1B 92.445 728 36 9 1384 2105 163906741 163906027 0.000000e+00 1022.0
48 TraesCS2A01G341100 chr1B 93.878 98 6 0 2103 2200 163905945 163905848 8.750000e-32 148.0
49 TraesCS2A01G341100 chrUn 92.486 732 32 11 1381 2105 88595889 88596604 0.000000e+00 1026.0
50 TraesCS2A01G341100 chrUn 95.702 605 25 1 29 632 239204019 239204623 0.000000e+00 972.0
51 TraesCS2A01G341100 chrUn 95.372 605 27 1 29 632 25806484 25805880 0.000000e+00 961.0
52 TraesCS2A01G341100 chrUn 93.878 98 6 0 2103 2200 88596686 88596783 8.750000e-32 148.0
53 TraesCS2A01G341100 chr4D 92.066 731 37 7 1381 2105 478773157 478773872 0.000000e+00 1009.0
54 TraesCS2A01G341100 chr4D 91.453 351 30 0 3556 3906 28486717 28486367 2.110000e-132 483.0
55 TraesCS2A01G341100 chr4D 87.055 309 29 7 3255 3555 467778485 467778790 4.840000e-89 339.0
56 TraesCS2A01G341100 chr4D 96.117 103 3 1 798 900 295251771 295251670 2.420000e-37 167.0
57 TraesCS2A01G341100 chr4D 90.756 119 7 2 2104 2222 136737606 136737720 5.230000e-34 156.0
58 TraesCS2A01G341100 chr2D 96.694 605 19 1 29 632 533819513 533820117 0.000000e+00 1005.0
59 TraesCS2A01G341100 chr2D 92.962 341 18 2 3048 3382 29238491 29238151 3.510000e-135 492.0
60 TraesCS2A01G341100 chr2D 92.023 351 27 1 3556 3906 391827156 391827505 3.510000e-135 492.0
61 TraesCS2A01G341100 chr2D 92.375 341 18 4 3048 3382 588551599 588551261 2.730000e-131 479.0
62 TraesCS2A01G341100 chr2D 95.855 193 8 0 1199 1391 646016721 646016529 2.930000e-81 313.0
63 TraesCS2A01G341100 chr1D 96.033 605 23 1 29 632 263327802 263328406 0.000000e+00 983.0
64 TraesCS2A01G341100 chr1D 92.308 351 27 0 3556 3906 474371318 474370968 2.100000e-137 499.0
65 TraesCS2A01G341100 chr1A 96.981 530 15 1 104 632 424338158 424337629 0.000000e+00 889.0
66 TraesCS2A01G341100 chr1A 90.855 503 40 3 895 1391 212154541 212154039 0.000000e+00 669.0
67 TraesCS2A01G341100 chr1A 85.266 319 29 7 3255 3555 481251284 481251602 2.930000e-81 313.0
68 TraesCS2A01G341100 chr1A 96.939 98 3 0 802 899 172893710 172893613 8.690000e-37 165.0
69 TraesCS2A01G341100 chr5A 97.276 514 13 1 122 634 546947079 546947592 0.000000e+00 870.0
70 TraesCS2A01G341100 chr5A 83.733 375 38 11 3210 3563 381499266 381498894 2.250000e-87 333.0
71 TraesCS2A01G341100 chr5A 85.714 322 35 8 3242 3555 660304327 660304645 2.910000e-86 329.0
72 TraesCS2A01G341100 chr5A 84.688 320 28 10 3255 3555 43193165 43193482 2.280000e-77 300.0
73 TraesCS2A01G341100 chr5A 83.495 309 40 8 3255 3555 500028192 500027887 1.070000e-70 278.0
74 TraesCS2A01G341100 chr5D 93.373 498 27 3 895 1386 25527521 25528018 0.000000e+00 732.0
75 TraesCS2A01G341100 chr5D 92.308 351 27 0 3556 3906 48355799 48356149 2.100000e-137 499.0
76 TraesCS2A01G341100 chr5D 91.738 351 29 0 3556 3906 509375875 509376225 4.540000e-134 488.0
77 TraesCS2A01G341100 chr5D 91.738 351 29 0 3556 3906 544218205 544218555 4.540000e-134 488.0
78 TraesCS2A01G341100 chr5D 91.570 344 23 2 3045 3382 438352941 438353284 1.640000e-128 470.0
79 TraesCS2A01G341100 chr5D 96.040 101 3 1 798 898 25522703 25522802 3.120000e-36 163.0
80 TraesCS2A01G341100 chr6A 90.946 497 36 4 895 1385 587391337 587391830 0.000000e+00 660.0
81 TraesCS2A01G341100 chr6A 85.498 331 27 9 3245 3555 211317259 211317588 3.770000e-85 326.0
82 TraesCS2A01G341100 chr6A 95.146 103 4 1 798 900 587391096 587391197 1.120000e-35 161.0
83 TraesCS2A01G341100 chr7A 87.782 532 41 9 3048 3555 6996622 6996091 5.590000e-168 601.0
84 TraesCS2A01G341100 chr7A 83.489 321 34 7 3255 3557 17962337 17962018 8.270000e-72 281.0
85 TraesCS2A01G341100 chr3D 92.593 351 26 0 3556 3906 511422243 511422593 4.510000e-139 505.0
86 TraesCS2A01G341100 chr3D 93.255 341 17 2 3048 3382 480726085 480726425 7.540000e-137 497.0
87 TraesCS2A01G341100 chr3D 91.738 351 29 0 3556 3906 549234167 549233817 4.540000e-134 488.0
88 TraesCS2A01G341100 chr3D 87.879 330 21 8 3245 3555 261380116 261379787 1.720000e-98 370.0
89 TraesCS2A01G341100 chr3D 96.117 103 3 1 798 900 327311275 327311376 2.420000e-37 167.0
90 TraesCS2A01G341100 chr6D 92.308 351 27 0 3556 3906 134338330 134338680 2.100000e-137 499.0
91 TraesCS2A01G341100 chr6D 93.215 339 17 2 3048 3380 172923906 172923568 9.750000e-136 494.0
92 TraesCS2A01G341100 chr7D 93.680 269 12 2 1104 1367 129956142 129955874 7.870000e-107 398.0
93 TraesCS2A01G341100 chr7B 96.117 103 3 1 798 900 699508926 699509027 2.420000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G341100 chr2A 576662616 576666523 3907 False 1291.033333 7217 95.063167 1 3908 6 chr2A.!!$F4 3907
1 TraesCS2A01G341100 chr2A 92833017 92833817 800 False 1181.000000 1181 93.201000 2249 3055 1 chr2A.!!$F2 806
2 TraesCS2A01G341100 chr2A 475494091 475494620 529 True 867.000000 867 96.226000 104 632 1 chr2A.!!$R1 528
3 TraesCS2A01G341100 chr6B 76448508 76449662 1154 True 763.500000 1375 93.572000 1122 2202 2 chr6B.!!$R2 1080
4 TraesCS2A01G341100 chr6B 695977071 695977961 890 False 656.000000 1164 93.350000 2103 3055 2 chr6B.!!$F1 952
5 TraesCS2A01G341100 chr3A 532011873 532012794 921 False 1282.000000 1282 91.501000 2103 3055 1 chr3A.!!$F3 952
6 TraesCS2A01G341100 chr3A 494368545 494369058 513 False 865.000000 865 97.082000 122 634 1 chr3A.!!$F2 512
7 TraesCS2A01G341100 chr3A 654992115 654992651 536 False 671.000000 671 89.944000 3043 3555 1 chr3A.!!$F4 512
8 TraesCS2A01G341100 chr5B 673472881 673473681 800 False 1170.000000 1170 92.946000 2249 3055 1 chr5B.!!$F3 806
9 TraesCS2A01G341100 chr5B 47275960 47276760 800 False 1153.000000 1153 92.574000 2249 3055 1 chr5B.!!$F1 806
10 TraesCS2A01G341100 chr5B 515116033 515116754 721 True 1074.000000 1074 93.544000 1384 2105 1 chr5B.!!$R1 721
11 TraesCS2A01G341100 chr5B 655868991 655869708 717 False 1022.000000 1022 92.339000 1381 2105 1 chr5B.!!$F2 724
12 TraesCS2A01G341100 chr3B 706293955 706295649 1694 True 1119.000000 1170 93.176500 1384 3055 2 chr3B.!!$R1 1671
13 TraesCS2A01G341100 chr3B 706750449 706752138 1689 False 1093.000000 1164 92.580500 1381 3055 2 chr3B.!!$F4 1674
14 TraesCS2A01G341100 chr3B 47159486 47160090 604 False 983.000000 983 96.033000 29 632 1 chr3B.!!$F1 603
15 TraesCS2A01G341100 chr3B 61777526 61778044 518 False 743.000000 743 92.600000 1586 2105 1 chr3B.!!$F2 519
16 TraesCS2A01G341100 chr4B 650590998 650592575 1577 False 729.000000 1158 93.187000 1500 3055 3 chr4B.!!$F2 1555
17 TraesCS2A01G341100 chr4B 144286874 144287615 741 False 445.000000 723 94.465500 798 1391 2 chr4B.!!$F1 593
18 TraesCS2A01G341100 chr2B 270836219 270837019 800 False 1158.000000 1158 92.698000 2249 3055 1 chr2B.!!$F2 806
19 TraesCS2A01G341100 chr2B 24799232 24799950 718 True 1014.000000 1014 92.170000 1384 2105 1 chr2B.!!$R1 721
20 TraesCS2A01G341100 chr2B 8264345 8264880 535 False 597.000000 597 87.500000 3045 3556 1 chr2B.!!$F1 511
21 TraesCS2A01G341100 chr2B 109344822 109345719 897 True 592.500000 1031 93.740000 1384 2200 2 chr2B.!!$R2 816
22 TraesCS2A01G341100 chr4A 664675866 664676583 717 False 1027.000000 1027 92.476000 1381 2105 1 chr4A.!!$F1 724
23 TraesCS2A01G341100 chr4A 519260083 519260585 502 True 691.000000 691 91.650000 895 1391 1 chr4A.!!$R3 496
24 TraesCS2A01G341100 chr1B 78833384 78834098 714 True 1027.000000 1027 92.582000 1384 2105 1 chr1B.!!$R1 721
25 TraesCS2A01G341100 chr1B 163905848 163906741 893 True 585.000000 1022 93.161500 1384 2200 2 chr1B.!!$R2 816
26 TraesCS2A01G341100 chrUn 239204019 239204623 604 False 972.000000 972 95.702000 29 632 1 chrUn.!!$F1 603
27 TraesCS2A01G341100 chrUn 25805880 25806484 604 True 961.000000 961 95.372000 29 632 1 chrUn.!!$R1 603
28 TraesCS2A01G341100 chrUn 88595889 88596783 894 False 587.000000 1026 93.182000 1381 2200 2 chrUn.!!$F2 819
29 TraesCS2A01G341100 chr4D 478773157 478773872 715 False 1009.000000 1009 92.066000 1381 2105 1 chr4D.!!$F3 724
30 TraesCS2A01G341100 chr2D 533819513 533820117 604 False 1005.000000 1005 96.694000 29 632 1 chr2D.!!$F2 603
31 TraesCS2A01G341100 chr1D 263327802 263328406 604 False 983.000000 983 96.033000 29 632 1 chr1D.!!$F1 603
32 TraesCS2A01G341100 chr1A 424337629 424338158 529 True 889.000000 889 96.981000 104 632 1 chr1A.!!$R3 528
33 TraesCS2A01G341100 chr1A 212154039 212154541 502 True 669.000000 669 90.855000 895 1391 1 chr1A.!!$R2 496
34 TraesCS2A01G341100 chr5A 546947079 546947592 513 False 870.000000 870 97.276000 122 634 1 chr5A.!!$F2 512
35 TraesCS2A01G341100 chr6A 587391096 587391830 734 False 410.500000 660 93.046000 798 1385 2 chr6A.!!$F2 587
36 TraesCS2A01G341100 chr7A 6996091 6996622 531 True 601.000000 601 87.782000 3048 3555 1 chr7A.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 1067 0.241749 AACCAATACGACGAGTGCGA 59.758 50.0 0.0 0.0 41.64 5.10 F
1674 1858 0.179227 CACACACACACACACACACG 60.179 55.0 0.0 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2659 2953 0.106569 TCAGCATTACAGGGCATGGG 60.107 55.0 3.46 0.0 0.00 4.00 R
3563 3882 0.036010 ACTGGGGCTGTCAGATTTCG 60.036 55.0 3.32 0.0 36.22 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.595772 CAAGTATGATTCTGCTCTACAACC 57.404 41.667 0.00 0.00 0.00 3.77
24 25 5.939764 AGTATGATTCTGCTCTACAACCA 57.060 39.130 0.00 0.00 0.00 3.67
25 26 6.491714 AGTATGATTCTGCTCTACAACCAT 57.508 37.500 0.00 0.00 0.00 3.55
26 27 6.893583 AGTATGATTCTGCTCTACAACCATT 58.106 36.000 0.00 0.00 0.00 3.16
27 28 6.765036 AGTATGATTCTGCTCTACAACCATTG 59.235 38.462 0.00 0.00 0.00 2.82
40 41 2.905736 CAACCATTGTTCCCCTGGATTT 59.094 45.455 0.00 0.00 34.08 2.17
49 50 0.249741 CCCCTGGATTTAGGTACGCG 60.250 60.000 3.53 3.53 36.02 6.01
52 53 1.474017 CTGGATTTAGGTACGCGTCG 58.526 55.000 18.63 0.00 0.00 5.12
112 113 0.737367 TCCTCAGCGTCTGCATTTCG 60.737 55.000 0.00 0.00 46.23 3.46
242 244 7.320399 TCTGTAATGACGTTAACTGATGTGAT 58.680 34.615 3.71 0.00 0.00 3.06
247 249 5.448438 TGACGTTAACTGATGTGATTTTGC 58.552 37.500 3.71 0.00 0.00 3.68
441 443 0.729116 CACGATGATGGTCACTTGCC 59.271 55.000 0.00 0.00 0.00 4.52
634 636 5.392380 GCTTGATGCTTATACACTTGCAGTT 60.392 40.000 0.00 0.00 38.87 3.16
635 637 5.550232 TGATGCTTATACACTTGCAGTTG 57.450 39.130 0.00 0.00 38.87 3.16
636 638 5.244755 TGATGCTTATACACTTGCAGTTGA 58.755 37.500 3.77 0.00 38.87 3.18
637 639 5.704978 TGATGCTTATACACTTGCAGTTGAA 59.295 36.000 3.77 0.00 38.87 2.69
638 640 6.375174 TGATGCTTATACACTTGCAGTTGAAT 59.625 34.615 3.77 0.00 38.87 2.57
639 641 5.941733 TGCTTATACACTTGCAGTTGAATG 58.058 37.500 3.77 0.00 0.00 2.67
640 642 5.704978 TGCTTATACACTTGCAGTTGAATGA 59.295 36.000 3.77 0.00 0.00 2.57
641 643 6.128200 TGCTTATACACTTGCAGTTGAATGAG 60.128 38.462 3.77 0.00 0.00 2.90
642 644 6.128172 GCTTATACACTTGCAGTTGAATGAGT 60.128 38.462 3.77 0.00 0.00 3.41
643 645 3.976793 ACACTTGCAGTTGAATGAGTG 57.023 42.857 8.90 8.90 40.11 3.51
644 646 2.033801 ACACTTGCAGTTGAATGAGTGC 59.966 45.455 10.12 0.00 44.40 4.40
645 647 2.292569 CACTTGCAGTTGAATGAGTGCT 59.707 45.455 6.30 0.00 44.44 4.40
646 648 2.954318 ACTTGCAGTTGAATGAGTGCTT 59.046 40.909 6.30 0.00 44.44 3.91
647 649 3.004106 ACTTGCAGTTGAATGAGTGCTTC 59.996 43.478 6.30 0.00 44.44 3.86
648 650 2.574450 TGCAGTTGAATGAGTGCTTCA 58.426 42.857 6.30 0.00 44.44 3.02
649 651 2.291465 TGCAGTTGAATGAGTGCTTCAC 59.709 45.455 6.30 0.00 44.44 3.18
650 652 2.291465 GCAGTTGAATGAGTGCTTCACA 59.709 45.455 0.00 0.00 41.63 3.58
651 653 3.057736 GCAGTTGAATGAGTGCTTCACAT 60.058 43.478 0.00 0.00 41.63 3.21
652 654 4.473199 CAGTTGAATGAGTGCTTCACATG 58.527 43.478 0.00 0.00 38.99 3.21
653 655 4.214758 CAGTTGAATGAGTGCTTCACATGA 59.785 41.667 0.00 0.00 38.99 3.07
654 656 5.008331 AGTTGAATGAGTGCTTCACATGAT 58.992 37.500 0.00 0.00 38.99 2.45
655 657 5.475909 AGTTGAATGAGTGCTTCACATGATT 59.524 36.000 0.00 0.00 38.99 2.57
656 658 6.656270 AGTTGAATGAGTGCTTCACATGATTA 59.344 34.615 0.00 0.00 38.99 1.75
657 659 7.338703 AGTTGAATGAGTGCTTCACATGATTAT 59.661 33.333 0.00 0.00 38.99 1.28
658 660 7.023197 TGAATGAGTGCTTCACATGATTATG 57.977 36.000 0.00 0.00 38.99 1.90
659 661 6.038936 TGAATGAGTGCTTCACATGATTATGG 59.961 38.462 0.00 0.00 38.99 2.74
660 662 4.847198 TGAGTGCTTCACATGATTATGGT 58.153 39.130 0.00 0.00 38.66 3.55
661 663 5.988287 TGAGTGCTTCACATGATTATGGTA 58.012 37.500 0.00 0.00 38.66 3.25
662 664 5.817296 TGAGTGCTTCACATGATTATGGTAC 59.183 40.000 0.00 0.00 38.66 3.34
663 665 5.744171 AGTGCTTCACATGATTATGGTACA 58.256 37.500 0.00 0.00 39.12 2.90
664 666 5.586243 AGTGCTTCACATGATTATGGTACAC 59.414 40.000 0.00 3.53 37.91 2.90
665 667 5.586243 GTGCTTCACATGATTATGGTACACT 59.414 40.000 0.00 0.00 38.66 3.55
666 668 6.094048 GTGCTTCACATGATTATGGTACACTT 59.906 38.462 0.00 0.00 38.66 3.16
667 669 7.888168 GTGCTTCACATGATTATGGTACACTTG 60.888 40.741 0.00 0.00 38.66 3.16
678 680 3.814625 TGGTACACTTGCAGTTGAATGA 58.185 40.909 3.77 0.00 0.00 2.57
679 681 3.814842 TGGTACACTTGCAGTTGAATGAG 59.185 43.478 3.77 0.00 0.00 2.90
680 682 3.815401 GGTACACTTGCAGTTGAATGAGT 59.185 43.478 3.77 0.00 0.00 3.41
681 683 3.976793 ACACTTGCAGTTGAATGAGTG 57.023 42.857 8.90 8.90 40.11 3.51
682 684 2.033801 ACACTTGCAGTTGAATGAGTGC 59.966 45.455 10.12 0.00 44.40 4.40
683 685 2.292569 CACTTGCAGTTGAATGAGTGCT 59.707 45.455 6.30 0.00 44.44 4.40
684 686 2.954318 ACTTGCAGTTGAATGAGTGCTT 59.046 40.909 6.30 0.00 44.44 3.91
685 687 3.004106 ACTTGCAGTTGAATGAGTGCTTC 59.996 43.478 6.30 0.00 44.44 3.86
686 688 2.574450 TGCAGTTGAATGAGTGCTTCA 58.426 42.857 6.30 0.00 44.44 3.02
687 689 2.291465 TGCAGTTGAATGAGTGCTTCAC 59.709 45.455 6.30 0.00 44.44 3.18
688 690 2.291465 GCAGTTGAATGAGTGCTTCACA 59.709 45.455 0.00 0.00 41.63 3.58
689 691 3.057736 GCAGTTGAATGAGTGCTTCACAT 60.058 43.478 0.00 0.00 41.63 3.21
690 692 4.473199 CAGTTGAATGAGTGCTTCACATG 58.527 43.478 0.00 0.00 38.99 3.21
691 693 4.214758 CAGTTGAATGAGTGCTTCACATGA 59.785 41.667 0.00 0.00 38.99 3.07
692 694 5.008331 AGTTGAATGAGTGCTTCACATGAT 58.992 37.500 0.00 0.00 38.99 2.45
693 695 5.475909 AGTTGAATGAGTGCTTCACATGATT 59.524 36.000 0.00 0.00 38.99 2.57
694 696 6.656270 AGTTGAATGAGTGCTTCACATGATTA 59.344 34.615 0.00 0.00 38.99 1.75
695 697 7.338703 AGTTGAATGAGTGCTTCACATGATTAT 59.661 33.333 0.00 0.00 38.99 1.28
696 698 7.023197 TGAATGAGTGCTTCACATGATTATG 57.977 36.000 0.00 0.00 38.99 1.90
697 699 6.038936 TGAATGAGTGCTTCACATGATTATGG 59.961 38.462 0.00 0.00 38.99 2.74
698 700 4.847198 TGAGTGCTTCACATGATTATGGT 58.153 39.130 0.00 0.00 38.66 3.55
699 701 5.988287 TGAGTGCTTCACATGATTATGGTA 58.012 37.500 0.00 0.00 38.66 3.25
700 702 5.817296 TGAGTGCTTCACATGATTATGGTAC 59.183 40.000 0.00 0.00 38.66 3.34
701 703 5.744171 AGTGCTTCACATGATTATGGTACA 58.256 37.500 0.00 0.00 39.12 2.90
702 704 5.586243 AGTGCTTCACATGATTATGGTACAC 59.414 40.000 0.00 3.53 37.91 2.90
703 705 5.586243 GTGCTTCACATGATTATGGTACACT 59.414 40.000 0.00 0.00 38.66 3.55
704 706 6.094048 GTGCTTCACATGATTATGGTACACTT 59.906 38.462 0.00 0.00 38.66 3.16
705 707 7.888168 GTGCTTCACATGATTATGGTACACTTG 60.888 40.741 0.00 0.00 38.66 3.16
716 718 3.814625 TGGTACACTTGCAGTTGAATGA 58.185 40.909 3.77 0.00 0.00 2.57
717 719 3.814842 TGGTACACTTGCAGTTGAATGAG 59.185 43.478 3.77 0.00 0.00 2.90
718 720 3.815401 GGTACACTTGCAGTTGAATGAGT 59.185 43.478 3.77 0.00 0.00 3.41
719 721 3.976793 ACACTTGCAGTTGAATGAGTG 57.023 42.857 8.90 8.90 40.11 3.51
720 722 2.033801 ACACTTGCAGTTGAATGAGTGC 59.966 45.455 10.12 0.00 44.40 4.40
721 723 2.292569 CACTTGCAGTTGAATGAGTGCT 59.707 45.455 6.30 0.00 44.44 4.40
722 724 2.954318 ACTTGCAGTTGAATGAGTGCTT 59.046 40.909 6.30 0.00 44.44 3.91
723 725 3.004106 ACTTGCAGTTGAATGAGTGCTTC 59.996 43.478 6.30 0.00 44.44 3.86
724 726 2.574450 TGCAGTTGAATGAGTGCTTCA 58.426 42.857 6.30 0.00 44.44 3.02
725 727 2.291465 TGCAGTTGAATGAGTGCTTCAC 59.709 45.455 6.30 0.00 44.44 3.18
726 728 2.291465 GCAGTTGAATGAGTGCTTCACA 59.709 45.455 0.00 0.00 41.63 3.58
727 729 3.057736 GCAGTTGAATGAGTGCTTCACAT 60.058 43.478 0.00 0.00 41.63 3.21
728 730 4.473199 CAGTTGAATGAGTGCTTCACATG 58.527 43.478 0.00 0.00 38.99 3.21
729 731 4.214758 CAGTTGAATGAGTGCTTCACATGA 59.785 41.667 0.00 0.00 38.99 3.07
730 732 5.008331 AGTTGAATGAGTGCTTCACATGAT 58.992 37.500 0.00 0.00 38.99 2.45
731 733 4.957759 TGAATGAGTGCTTCACATGATG 57.042 40.909 0.00 0.00 38.99 3.07
732 734 3.128068 TGAATGAGTGCTTCACATGATGC 59.872 43.478 11.71 11.71 43.15 3.91
733 735 2.484742 TGAGTGCTTCACATGATGCT 57.515 45.000 17.57 2.19 43.23 3.79
734 736 2.786777 TGAGTGCTTCACATGATGCTT 58.213 42.857 17.57 8.50 43.23 3.91
735 737 3.941573 TGAGTGCTTCACATGATGCTTA 58.058 40.909 17.57 0.00 43.23 3.09
736 738 4.520179 TGAGTGCTTCACATGATGCTTAT 58.480 39.130 17.57 6.51 43.23 1.73
737 739 5.673514 TGAGTGCTTCACATGATGCTTATA 58.326 37.500 17.57 0.00 43.23 0.98
738 740 5.525012 TGAGTGCTTCACATGATGCTTATAC 59.475 40.000 17.57 9.49 43.23 1.47
739 741 5.430886 AGTGCTTCACATGATGCTTATACA 58.569 37.500 17.57 0.00 43.23 2.29
740 742 5.295292 AGTGCTTCACATGATGCTTATACAC 59.705 40.000 17.57 8.65 43.23 2.90
741 743 5.295292 GTGCTTCACATGATGCTTATACACT 59.705 40.000 17.57 0.00 43.23 3.55
742 744 5.882000 TGCTTCACATGATGCTTATACACTT 59.118 36.000 17.57 0.00 43.23 3.16
743 745 6.183360 TGCTTCACATGATGCTTATACACTTG 60.183 38.462 17.57 0.00 43.23 3.16
744 746 5.739752 TCACATGATGCTTATACACTTGC 57.260 39.130 0.00 0.00 0.00 4.01
745 747 5.184711 TCACATGATGCTTATACACTTGCA 58.815 37.500 0.00 0.00 39.83 4.08
746 748 5.295045 TCACATGATGCTTATACACTTGCAG 59.705 40.000 0.00 0.00 38.87 4.41
747 749 5.065602 CACATGATGCTTATACACTTGCAGT 59.934 40.000 0.00 0.00 38.87 4.40
748 750 5.649395 ACATGATGCTTATACACTTGCAGTT 59.351 36.000 0.00 0.00 38.87 3.16
749 751 5.550232 TGATGCTTATACACTTGCAGTTG 57.450 39.130 0.00 0.00 38.87 3.16
750 752 5.244755 TGATGCTTATACACTTGCAGTTGA 58.755 37.500 3.77 0.00 38.87 3.18
751 753 5.704978 TGATGCTTATACACTTGCAGTTGAA 59.295 36.000 3.77 0.00 38.87 2.69
752 754 6.375174 TGATGCTTATACACTTGCAGTTGAAT 59.625 34.615 3.77 0.00 38.87 2.57
753 755 5.941733 TGCTTATACACTTGCAGTTGAATG 58.058 37.500 3.77 0.00 0.00 2.67
754 756 5.704978 TGCTTATACACTTGCAGTTGAATGA 59.295 36.000 3.77 0.00 0.00 2.57
755 757 6.375174 TGCTTATACACTTGCAGTTGAATGAT 59.625 34.615 3.77 0.00 0.00 2.45
756 758 6.690098 GCTTATACACTTGCAGTTGAATGATG 59.310 38.462 3.77 0.00 0.00 3.07
757 759 3.293311 ACACTTGCAGTTGAATGATGC 57.707 42.857 3.77 0.00 40.40 3.91
758 760 2.247637 CACTTGCAGTTGAATGATGCG 58.752 47.619 0.00 0.00 42.92 4.73
759 761 1.881973 ACTTGCAGTTGAATGATGCGT 59.118 42.857 0.00 0.00 42.92 5.24
760 762 3.073678 ACTTGCAGTTGAATGATGCGTA 58.926 40.909 0.00 0.00 42.92 4.42
761 763 3.691118 ACTTGCAGTTGAATGATGCGTAT 59.309 39.130 0.00 0.00 42.92 3.06
762 764 4.875536 ACTTGCAGTTGAATGATGCGTATA 59.124 37.500 0.00 0.00 42.92 1.47
763 765 4.794248 TGCAGTTGAATGATGCGTATAC 57.206 40.909 0.00 0.00 42.92 1.47
764 766 4.187694 TGCAGTTGAATGATGCGTATACA 58.812 39.130 3.32 0.00 42.92 2.29
765 767 4.033932 TGCAGTTGAATGATGCGTATACAC 59.966 41.667 3.32 0.00 42.92 2.90
766 768 4.271049 GCAGTTGAATGATGCGTATACACT 59.729 41.667 3.32 0.00 0.00 3.55
767 769 5.220662 GCAGTTGAATGATGCGTATACACTT 60.221 40.000 3.32 0.00 0.00 3.16
768 770 6.187480 CAGTTGAATGATGCGTATACACTTG 58.813 40.000 3.32 0.00 0.00 3.16
769 771 4.794248 TGAATGATGCGTATACACTTGC 57.206 40.909 3.32 0.00 0.00 4.01
770 772 4.187694 TGAATGATGCGTATACACTTGCA 58.812 39.130 3.32 4.70 42.22 4.08
771 773 4.270808 TGAATGATGCGTATACACTTGCAG 59.729 41.667 3.32 0.00 41.19 4.41
772 774 3.245518 TGATGCGTATACACTTGCAGT 57.754 42.857 3.32 0.00 41.19 4.40
773 775 3.595173 TGATGCGTATACACTTGCAGTT 58.405 40.909 3.32 0.00 41.19 3.16
774 776 3.370672 TGATGCGTATACACTTGCAGTTG 59.629 43.478 3.32 0.00 41.19 3.16
775 777 3.033368 TGCGTATACACTTGCAGTTGA 57.967 42.857 3.32 0.00 32.73 3.18
776 778 3.394719 TGCGTATACACTTGCAGTTGAA 58.605 40.909 3.32 0.00 32.73 2.69
777 779 4.000325 TGCGTATACACTTGCAGTTGAAT 59.000 39.130 3.32 0.00 32.73 2.57
778 780 4.142924 TGCGTATACACTTGCAGTTGAATG 60.143 41.667 3.32 0.00 32.73 2.67
779 781 4.142902 GCGTATACACTTGCAGTTGAATGT 60.143 41.667 3.32 0.00 0.00 2.71
780 782 5.616866 GCGTATACACTTGCAGTTGAATGTT 60.617 40.000 3.32 0.00 0.00 2.71
781 783 6.015504 CGTATACACTTGCAGTTGAATGTTC 58.984 40.000 3.32 0.00 0.00 3.18
782 784 6.347321 CGTATACACTTGCAGTTGAATGTTCA 60.347 38.462 3.32 0.00 34.92 3.18
783 785 4.924305 ACACTTGCAGTTGAATGTTCAT 57.076 36.364 3.77 0.00 37.00 2.57
784 786 7.686438 ATACACTTGCAGTTGAATGTTCATA 57.314 32.000 3.77 0.00 37.00 2.15
785 787 6.005583 ACACTTGCAGTTGAATGTTCATAG 57.994 37.500 3.77 0.00 37.00 2.23
786 788 5.532406 ACACTTGCAGTTGAATGTTCATAGT 59.468 36.000 3.77 0.00 37.00 2.12
787 789 6.710295 ACACTTGCAGTTGAATGTTCATAGTA 59.290 34.615 3.77 0.00 37.00 1.82
788 790 7.095060 ACACTTGCAGTTGAATGTTCATAGTAG 60.095 37.037 3.77 0.00 37.00 2.57
789 791 6.936900 ACTTGCAGTTGAATGTTCATAGTAGT 59.063 34.615 0.00 0.00 37.00 2.73
790 792 6.726258 TGCAGTTGAATGTTCATAGTAGTG 57.274 37.500 0.00 0.00 37.00 2.74
791 793 6.463360 TGCAGTTGAATGTTCATAGTAGTGA 58.537 36.000 0.00 0.00 37.00 3.41
792 794 6.591448 TGCAGTTGAATGTTCATAGTAGTGAG 59.409 38.462 0.00 0.00 37.00 3.51
793 795 6.456181 GCAGTTGAATGTTCATAGTAGTGAGC 60.456 42.308 0.00 0.00 37.00 4.26
794 796 6.815641 CAGTTGAATGTTCATAGTAGTGAGCT 59.184 38.462 0.00 0.00 37.00 4.09
795 797 7.332926 CAGTTGAATGTTCATAGTAGTGAGCTT 59.667 37.037 0.00 0.00 37.00 3.74
796 798 7.547370 AGTTGAATGTTCATAGTAGTGAGCTTC 59.453 37.037 0.00 0.00 37.00 3.86
797 799 6.935167 TGAATGTTCATAGTAGTGAGCTTCA 58.065 36.000 0.00 0.00 31.37 3.02
798 800 6.813649 TGAATGTTCATAGTAGTGAGCTTCAC 59.186 38.462 7.88 7.88 38.78 3.18
799 801 7.525360 TGAATGTTCATAGTAGTGAGCTTCACA 60.525 37.037 15.59 0.00 39.95 3.58
813 815 7.210174 GTGAGCTTCACATGATTATGGTACTA 58.790 38.462 0.00 0.00 46.22 1.82
849 851 2.653726 TGAATGAGTGCTTGGTGTTGT 58.346 42.857 0.00 0.00 0.00 3.32
920 1067 0.241749 AACCAATACGACGAGTGCGA 59.758 50.000 0.00 0.00 41.64 5.10
921 1068 0.454600 ACCAATACGACGAGTGCGAT 59.545 50.000 0.00 0.00 41.64 4.58
978 1126 3.606662 GAGCTCGCCGCCCTGATA 61.607 66.667 0.00 0.00 40.39 2.15
1006 1154 2.351276 GCCCGACTTGGATGGTGT 59.649 61.111 0.00 0.00 42.00 4.16
1047 1195 2.647297 GACGTCGTCCCGGAGTTT 59.353 61.111 14.60 0.00 0.00 2.66
1048 1196 1.731969 GACGTCGTCCCGGAGTTTG 60.732 63.158 14.60 0.00 0.00 2.93
1055 1203 1.770927 TCCCGGAGTTTGTTGGGGA 60.771 57.895 0.73 0.00 44.50 4.81
1082 1230 1.282570 CATTTGACAAGGCGCGTGT 59.717 52.632 14.47 14.47 0.00 4.49
1089 1237 2.430244 AAGGCGCGTGTCACTACG 60.430 61.111 8.43 10.04 46.28 3.51
1094 1242 1.082300 CGCGTGTCACTACGAGTGT 60.082 57.895 9.02 0.00 46.03 3.55
1169 1323 1.840737 TGTCTCCTCTCTGTGTAGCC 58.159 55.000 0.00 0.00 0.00 3.93
1193 1351 5.277490 CGAATGTTGTTCATGTGACTGTCTT 60.277 40.000 9.51 0.00 36.81 3.01
1282 1440 0.690762 GGAGGGTGGCTTTGTGTAGA 59.309 55.000 0.00 0.00 0.00 2.59
1419 1580 2.458969 TTTGTGGCATCCAGGGGCAT 62.459 55.000 6.39 0.00 43.07 4.40
1486 1647 2.158534 TGGCTTGGATGTGTACTTGGTT 60.159 45.455 0.00 0.00 0.00 3.67
1492 1653 1.200020 GATGTGTACTTGGTTGCCAGC 59.800 52.381 0.00 0.00 33.81 4.85
1546 1707 2.290287 CGTGATCCACCCTCCCACA 61.290 63.158 0.00 0.00 0.00 4.17
1651 1819 8.539674 GTGATATTCAGTTTTTGTGTGTTTTCC 58.460 33.333 0.00 0.00 0.00 3.13
1674 1858 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
1675 1859 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
1676 1860 1.669437 ACACACACACACACACGCA 60.669 52.632 0.00 0.00 0.00 5.24
1677 1861 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
1780 1966 6.396450 GGACTCTTGAGGAAAGTTTACGTAT 58.604 40.000 0.00 0.00 37.18 3.06
1911 2098 3.070476 TGTAATCACTTGCTGCATCCA 57.930 42.857 1.84 0.00 0.00 3.41
1923 2110 2.490903 GCTGCATCCAGTTTGATTGACT 59.509 45.455 0.00 0.00 41.26 3.41
2019 2206 8.150296 ACAAGTAAAGCAAAGCATCCTATTTTT 58.850 29.630 0.00 0.00 0.00 1.94
2098 2285 5.149973 TGCTGTTGTGCATAAAATTCCAT 57.850 34.783 0.00 0.00 38.12 3.41
2112 2404 9.031360 CATAAAATTCCATGATCTTGAAGCAAG 57.969 33.333 10.07 0.84 42.25 4.01
2170 2464 0.884259 TATGATGCATTGGTCGGCCG 60.884 55.000 22.12 22.12 37.67 6.13
2308 2602 3.153919 TCAAGTTTATGTTCCCTGGTGC 58.846 45.455 0.00 0.00 0.00 5.01
2322 2616 2.735134 CCTGGTGCGTAGTTAACTTGTC 59.265 50.000 14.49 4.45 0.00 3.18
2323 2617 3.554337 CCTGGTGCGTAGTTAACTTGTCT 60.554 47.826 14.49 0.00 0.00 3.41
2324 2618 3.386486 TGGTGCGTAGTTAACTTGTCTG 58.614 45.455 14.49 1.04 0.00 3.51
2325 2619 3.181473 TGGTGCGTAGTTAACTTGTCTGT 60.181 43.478 14.49 0.00 0.00 3.41
2399 2693 5.242434 TCCGTGTACAGTATGAAGCAAAAT 58.758 37.500 0.00 0.00 39.69 1.82
2401 2695 5.106712 CCGTGTACAGTATGAAGCAAAATGT 60.107 40.000 0.00 0.00 39.69 2.71
2557 2851 7.844493 TTGTAGGAAGTAGAAACACTAAGGA 57.156 36.000 0.00 0.00 32.49 3.36
2564 2858 8.475639 GGAAGTAGAAACACTAAGGATGACATA 58.524 37.037 0.00 0.00 32.49 2.29
2570 2864 8.157476 AGAAACACTAAGGATGACATACACTTT 58.843 33.333 0.00 0.00 0.00 2.66
2584 2878 7.439955 TGACATACACTTTACTGTTTCATTCGT 59.560 33.333 0.00 0.00 0.00 3.85
2638 2932 3.613494 TGCAACTATACGCCCTTTGTA 57.387 42.857 0.00 0.00 0.00 2.41
2696 2990 4.194640 GCTGAAGCATGGTTCTCTGATAA 58.805 43.478 31.37 13.60 41.59 1.75
2758 3052 4.485163 CTTTTGGCAGGTAATCCTTTTCG 58.515 43.478 0.00 0.00 43.07 3.46
2765 3059 1.132453 GGTAATCCTTTTCGCTGCCAC 59.868 52.381 0.00 0.00 0.00 5.01
2843 3138 1.783250 AAGACCCTGAAGCCTGGTGG 61.783 60.000 0.00 0.00 30.97 4.61
3014 3309 7.581011 CAAACTTATTTTGGCTGTGATTACC 57.419 36.000 0.00 0.00 40.98 2.85
3016 3311 7.480760 AACTTATTTTGGCTGTGATTACCAT 57.519 32.000 0.00 0.00 32.39 3.55
3017 3312 7.480760 ACTTATTTTGGCTGTGATTACCATT 57.519 32.000 0.00 0.00 32.39 3.16
3025 3320 8.532186 TTGGCTGTGATTACCATTGTATTATT 57.468 30.769 0.00 0.00 32.39 1.40
3037 3332 7.895759 ACCATTGTATTATTTGTGCTTTCTGT 58.104 30.769 0.00 0.00 0.00 3.41
3103 3398 1.488390 ATAGCCATTTGCCCTTGTGG 58.512 50.000 0.00 0.00 42.71 4.17
3125 3420 4.156556 GGTGTCAAGCTTCTAAATGCATGA 59.843 41.667 0.00 0.00 35.07 3.07
3132 3427 7.668469 TCAAGCTTCTAAATGCATGATATGGAT 59.332 33.333 0.00 0.00 43.57 3.41
3277 3578 4.729552 ATAGGCTGAATTAATGGGCTCA 57.270 40.909 13.03 0.00 36.11 4.26
3313 3614 1.743772 CGAATCGGACTGGGCTGAATT 60.744 52.381 0.00 0.00 0.00 2.17
3348 3649 5.007528 CCTTTTCAATTGGTCGCAATTTTGT 59.992 36.000 5.42 0.00 32.97 2.83
3354 3655 1.402259 TGGTCGCAATTTTGTCACGTT 59.598 42.857 0.00 0.00 0.00 3.99
3383 3684 2.124612 TCGGATCCGACGTGGCTA 60.125 61.111 32.59 8.40 44.01 3.93
3386 3687 2.125961 GGATCCGACGTGGCTAGGT 61.126 63.158 0.00 0.00 37.80 3.08
3387 3688 0.820891 GGATCCGACGTGGCTAGGTA 60.821 60.000 0.00 0.00 37.80 3.08
3388 3689 0.592148 GATCCGACGTGGCTAGGTAG 59.408 60.000 0.00 0.00 37.80 3.18
3389 3690 0.106819 ATCCGACGTGGCTAGGTAGT 60.107 55.000 0.00 0.00 37.80 2.73
3394 3713 3.367292 CCGACGTGGCTAGGTAGTAAAAA 60.367 47.826 0.00 0.00 0.00 1.94
3410 3729 3.726291 AAAAAGTCATGGGTTCAACGG 57.274 42.857 0.00 0.00 0.00 4.44
3505 3824 5.473504 AGGTCGCAAATGAAAAACTATGACT 59.526 36.000 0.00 0.00 0.00 3.41
3520 3839 3.947910 ATGACTTTTCAGTGGCCAATG 57.052 42.857 27.04 27.04 34.35 2.82
3537 3856 4.627741 GCCAATGGTGAGGGTCATAAGTTA 60.628 45.833 0.00 0.00 0.00 2.24
3557 3876 7.625828 AGTTAACATATTTCTTGTAGTGGGC 57.374 36.000 8.61 0.00 0.00 5.36
3558 3877 6.602009 AGTTAACATATTTCTTGTAGTGGGCC 59.398 38.462 8.61 0.00 0.00 5.80
3559 3878 4.862641 ACATATTTCTTGTAGTGGGCCT 57.137 40.909 4.53 0.00 0.00 5.19
3560 3879 4.781934 ACATATTTCTTGTAGTGGGCCTC 58.218 43.478 4.53 0.00 0.00 4.70
3561 3880 2.808906 ATTTCTTGTAGTGGGCCTCC 57.191 50.000 4.53 0.00 0.00 4.30
3562 3881 1.742308 TTTCTTGTAGTGGGCCTCCT 58.258 50.000 4.53 2.99 0.00 3.69
3563 3882 1.276622 TTCTTGTAGTGGGCCTCCTC 58.723 55.000 4.53 0.00 0.00 3.71
3564 3883 0.970937 TCTTGTAGTGGGCCTCCTCG 60.971 60.000 4.53 0.00 0.00 4.63
3565 3884 0.970937 CTTGTAGTGGGCCTCCTCGA 60.971 60.000 4.53 0.00 0.00 4.04
3566 3885 0.543410 TTGTAGTGGGCCTCCTCGAA 60.543 55.000 4.53 0.00 0.00 3.71
3567 3886 0.543410 TGTAGTGGGCCTCCTCGAAA 60.543 55.000 4.53 0.00 0.00 3.46
3568 3887 0.831307 GTAGTGGGCCTCCTCGAAAT 59.169 55.000 4.53 0.00 0.00 2.17
3569 3888 1.120530 TAGTGGGCCTCCTCGAAATC 58.879 55.000 4.53 0.00 0.00 2.17
3570 3889 0.618968 AGTGGGCCTCCTCGAAATCT 60.619 55.000 4.53 0.00 0.00 2.40
3571 3890 0.462759 GTGGGCCTCCTCGAAATCTG 60.463 60.000 4.53 0.00 0.00 2.90
3572 3891 0.617535 TGGGCCTCCTCGAAATCTGA 60.618 55.000 4.53 0.00 0.00 3.27
3573 3892 0.179070 GGGCCTCCTCGAAATCTGAC 60.179 60.000 0.84 0.00 0.00 3.51
3574 3893 0.537188 GGCCTCCTCGAAATCTGACA 59.463 55.000 0.00 0.00 0.00 3.58
3575 3894 1.472376 GGCCTCCTCGAAATCTGACAG 60.472 57.143 0.00 0.00 0.00 3.51
3576 3895 1.933247 CCTCCTCGAAATCTGACAGC 58.067 55.000 0.00 0.00 0.00 4.40
3577 3896 1.472376 CCTCCTCGAAATCTGACAGCC 60.472 57.143 0.00 0.00 0.00 4.85
3578 3897 0.537188 TCCTCGAAATCTGACAGCCC 59.463 55.000 0.00 0.00 0.00 5.19
3579 3898 0.462759 CCTCGAAATCTGACAGCCCC 60.463 60.000 0.00 0.00 0.00 5.80
3580 3899 0.250234 CTCGAAATCTGACAGCCCCA 59.750 55.000 0.00 0.00 0.00 4.96
3581 3900 0.250234 TCGAAATCTGACAGCCCCAG 59.750 55.000 0.00 0.00 0.00 4.45
3582 3901 0.036010 CGAAATCTGACAGCCCCAGT 60.036 55.000 0.00 0.00 33.57 4.00
3583 3902 1.743996 GAAATCTGACAGCCCCAGTC 58.256 55.000 0.00 0.00 36.55 3.51
3584 3903 0.329596 AAATCTGACAGCCCCAGTCC 59.670 55.000 0.00 0.00 35.15 3.85
3585 3904 1.566298 AATCTGACAGCCCCAGTCCC 61.566 60.000 0.00 0.00 35.15 4.46
3586 3905 2.770868 ATCTGACAGCCCCAGTCCCA 62.771 60.000 0.00 0.00 35.15 4.37
3587 3906 2.449518 TGACAGCCCCAGTCCCAA 60.450 61.111 0.00 0.00 35.15 4.12
3588 3907 2.067932 CTGACAGCCCCAGTCCCAAA 62.068 60.000 0.00 0.00 35.15 3.28
3589 3908 1.603739 GACAGCCCCAGTCCCAAAC 60.604 63.158 0.00 0.00 0.00 2.93
3590 3909 2.283173 CAGCCCCAGTCCCAAACC 60.283 66.667 0.00 0.00 0.00 3.27
3591 3910 3.590574 AGCCCCAGTCCCAAACCC 61.591 66.667 0.00 0.00 0.00 4.11
3592 3911 3.590574 GCCCCAGTCCCAAACCCT 61.591 66.667 0.00 0.00 0.00 4.34
3593 3912 2.235761 GCCCCAGTCCCAAACCCTA 61.236 63.158 0.00 0.00 0.00 3.53
3594 3913 1.999346 CCCCAGTCCCAAACCCTAG 59.001 63.158 0.00 0.00 0.00 3.02
3595 3914 1.303282 CCCAGTCCCAAACCCTAGC 59.697 63.158 0.00 0.00 0.00 3.42
3596 3915 1.303282 CCAGTCCCAAACCCTAGCC 59.697 63.158 0.00 0.00 0.00 3.93
3597 3916 1.497309 CCAGTCCCAAACCCTAGCCA 61.497 60.000 0.00 0.00 0.00 4.75
3598 3917 0.404040 CAGTCCCAAACCCTAGCCAA 59.596 55.000 0.00 0.00 0.00 4.52
3599 3918 0.698818 AGTCCCAAACCCTAGCCAAG 59.301 55.000 0.00 0.00 0.00 3.61
3600 3919 0.696501 GTCCCAAACCCTAGCCAAGA 59.303 55.000 0.00 0.00 0.00 3.02
3601 3920 1.074889 GTCCCAAACCCTAGCCAAGAA 59.925 52.381 0.00 0.00 0.00 2.52
3602 3921 1.074889 TCCCAAACCCTAGCCAAGAAC 59.925 52.381 0.00 0.00 0.00 3.01
3603 3922 1.075536 CCCAAACCCTAGCCAAGAACT 59.924 52.381 0.00 0.00 0.00 3.01
3604 3923 2.437413 CCAAACCCTAGCCAAGAACTC 58.563 52.381 0.00 0.00 0.00 3.01
3605 3924 2.076863 CAAACCCTAGCCAAGAACTCG 58.923 52.381 0.00 0.00 0.00 4.18
3606 3925 1.349067 AACCCTAGCCAAGAACTCGT 58.651 50.000 0.00 0.00 0.00 4.18
3607 3926 0.896226 ACCCTAGCCAAGAACTCGTC 59.104 55.000 0.00 0.00 0.00 4.20
3608 3927 0.179134 CCCTAGCCAAGAACTCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
3609 3928 0.179134 CCTAGCCAAGAACTCGTCGG 60.179 60.000 0.00 0.00 0.00 4.79
3610 3929 0.802607 CTAGCCAAGAACTCGTCGGC 60.803 60.000 0.00 0.00 43.31 5.54
3611 3930 2.221906 TAGCCAAGAACTCGTCGGCC 62.222 60.000 0.00 0.00 44.06 6.13
3612 3931 2.809601 CCAAGAACTCGTCGGCCG 60.810 66.667 22.12 22.12 38.13 6.13
3613 3932 2.809601 CAAGAACTCGTCGGCCGG 60.810 66.667 27.83 11.94 37.11 6.13
3614 3933 4.736896 AAGAACTCGTCGGCCGGC 62.737 66.667 27.83 25.32 37.11 6.13
3645 3964 3.594603 CATAGGGCTATGGAACTACGG 57.405 52.381 0.00 0.00 39.30 4.02
3646 3965 1.335145 TAGGGCTATGGAACTACGGC 58.665 55.000 0.00 0.00 0.00 5.68
3647 3966 1.070957 GGGCTATGGAACTACGGCC 59.929 63.158 0.00 0.00 38.92 6.13
3648 3967 1.300697 GGCTATGGAACTACGGCCG 60.301 63.158 26.86 26.86 0.00 6.13
3649 3968 1.954651 GCTATGGAACTACGGCCGC 60.955 63.158 28.58 8.35 0.00 6.53
3650 3969 1.440060 CTATGGAACTACGGCCGCA 59.560 57.895 28.58 12.87 0.00 5.69
3651 3970 0.179094 CTATGGAACTACGGCCGCAA 60.179 55.000 28.58 13.53 0.00 4.85
3652 3971 0.249676 TATGGAACTACGGCCGCAAA 59.750 50.000 28.58 10.51 0.00 3.68
3653 3972 1.024579 ATGGAACTACGGCCGCAAAG 61.025 55.000 28.58 22.38 0.00 2.77
3654 3973 2.396157 GGAACTACGGCCGCAAAGG 61.396 63.158 28.58 13.29 44.97 3.11
3663 3982 3.659092 CCGCAAAGGCAAGCACGA 61.659 61.111 0.00 0.00 41.24 4.35
3664 3983 2.427410 CGCAAAGGCAAGCACGAC 60.427 61.111 0.00 0.00 41.24 4.34
3665 3984 2.050077 GCAAAGGCAAGCACGACC 60.050 61.111 0.00 0.00 40.72 4.79
3666 3985 2.252260 CAAAGGCAAGCACGACCG 59.748 61.111 0.00 0.00 0.00 4.79
3667 3986 3.660111 AAAGGCAAGCACGACCGC 61.660 61.111 0.00 0.00 0.00 5.68
3685 4004 4.459089 GAGGCTGGCACCTCGTCC 62.459 72.222 16.67 0.19 46.52 4.79
3689 4008 4.436998 CTGGCACCTCGTCCGGAC 62.437 72.222 25.28 25.28 0.00 4.79
3708 4027 4.680237 CCGCCGTGGCTCAGTGAA 62.680 66.667 9.55 0.00 39.32 3.18
3709 4028 3.114616 CGCCGTGGCTCAGTGAAG 61.115 66.667 9.55 0.00 39.32 3.02
3710 4029 2.343758 GCCGTGGCTCAGTGAAGA 59.656 61.111 2.98 0.00 38.26 2.87
3711 4030 1.301716 GCCGTGGCTCAGTGAAGAA 60.302 57.895 2.98 0.00 38.26 2.52
3712 4031 1.294659 GCCGTGGCTCAGTGAAGAAG 61.295 60.000 2.98 0.00 38.26 2.85
3713 4032 0.671781 CCGTGGCTCAGTGAAGAAGG 60.672 60.000 0.00 0.00 0.00 3.46
3714 4033 0.318441 CGTGGCTCAGTGAAGAAGGA 59.682 55.000 0.00 0.00 0.00 3.36
3715 4034 1.671261 CGTGGCTCAGTGAAGAAGGAG 60.671 57.143 0.00 0.00 0.00 3.69
3716 4035 1.620819 GTGGCTCAGTGAAGAAGGAGA 59.379 52.381 0.00 0.00 0.00 3.71
3717 4036 2.037772 GTGGCTCAGTGAAGAAGGAGAA 59.962 50.000 0.00 0.00 0.00 2.87
3718 4037 2.301296 TGGCTCAGTGAAGAAGGAGAAG 59.699 50.000 0.00 0.00 0.00 2.85
3719 4038 2.345876 GCTCAGTGAAGAAGGAGAAGC 58.654 52.381 0.00 0.00 0.00 3.86
3720 4039 2.934801 GCTCAGTGAAGAAGGAGAAGCC 60.935 54.545 0.00 0.00 0.00 4.35
3721 4040 1.625818 TCAGTGAAGAAGGAGAAGCCC 59.374 52.381 0.00 0.00 37.37 5.19
3722 4041 0.610687 AGTGAAGAAGGAGAAGCCCG 59.389 55.000 0.00 0.00 37.37 6.13
3723 4042 1.021920 GTGAAGAAGGAGAAGCCCGC 61.022 60.000 0.00 0.00 37.37 6.13
3724 4043 1.811679 GAAGAAGGAGAAGCCCGCG 60.812 63.158 0.00 0.00 37.37 6.46
3725 4044 2.508586 GAAGAAGGAGAAGCCCGCGT 62.509 60.000 4.92 0.00 37.37 6.01
3726 4045 2.508586 AAGAAGGAGAAGCCCGCGTC 62.509 60.000 4.92 0.00 37.37 5.19
3727 4046 4.436998 AAGGAGAAGCCCGCGTCG 62.437 66.667 4.92 0.00 37.37 5.12
3772 4091 2.974698 CCGCCCGCATTCTCCATC 60.975 66.667 0.00 0.00 0.00 3.51
3773 4092 3.341043 CGCCCGCATTCTCCATCG 61.341 66.667 0.00 0.00 0.00 3.84
3774 4093 3.654020 GCCCGCATTCTCCATCGC 61.654 66.667 0.00 0.00 0.00 4.58
3775 4094 3.341043 CCCGCATTCTCCATCGCG 61.341 66.667 0.00 0.00 46.96 5.87
3776 4095 4.005472 CCGCATTCTCCATCGCGC 62.005 66.667 0.00 0.00 46.09 6.86
3777 4096 4.005472 CGCATTCTCCATCGCGCC 62.005 66.667 0.00 0.00 41.38 6.53
3778 4097 3.654020 GCATTCTCCATCGCGCCC 61.654 66.667 0.00 0.00 0.00 6.13
3779 4098 2.203056 CATTCTCCATCGCGCCCA 60.203 61.111 0.00 0.00 0.00 5.36
3780 4099 1.598962 CATTCTCCATCGCGCCCAT 60.599 57.895 0.00 0.00 0.00 4.00
3781 4100 1.598962 ATTCTCCATCGCGCCCATG 60.599 57.895 0.00 4.20 0.00 3.66
3782 4101 3.755526 TTCTCCATCGCGCCCATGG 62.756 63.158 21.98 21.98 42.16 3.66
3807 4126 4.156622 CGAGCGCGACCGACACTA 62.157 66.667 12.10 0.00 40.82 2.74
3808 4127 2.576317 GAGCGCGACCGACACTAC 60.576 66.667 12.10 0.00 36.29 2.73
3809 4128 3.318539 GAGCGCGACCGACACTACA 62.319 63.158 12.10 0.00 36.29 2.74
3810 4129 2.202570 GCGCGACCGACACTACAT 60.203 61.111 12.10 0.00 36.29 2.29
3811 4130 2.222217 GCGCGACCGACACTACATC 61.222 63.158 12.10 0.00 36.29 3.06
3812 4131 1.933041 CGCGACCGACACTACATCG 60.933 63.158 0.00 0.00 39.33 3.84
3813 4132 1.426621 GCGACCGACACTACATCGA 59.573 57.895 0.00 0.00 42.25 3.59
3814 4133 0.589229 GCGACCGACACTACATCGAG 60.589 60.000 0.00 0.00 42.25 4.04
3815 4134 0.027716 CGACCGACACTACATCGAGG 59.972 60.000 0.00 0.00 42.25 4.63
3816 4135 0.248539 GACCGACACTACATCGAGGC 60.249 60.000 0.00 0.00 42.25 4.70
3817 4136 1.298413 CCGACACTACATCGAGGCG 60.298 63.158 0.00 0.00 42.25 5.52
3818 4137 1.298413 CGACACTACATCGAGGCGG 60.298 63.158 0.00 0.00 42.25 6.13
3819 4138 1.589196 GACACTACATCGAGGCGGC 60.589 63.158 0.00 0.00 0.00 6.53
3820 4139 2.279517 CACTACATCGAGGCGGCC 60.280 66.667 12.11 12.11 0.00 6.13
3821 4140 2.442272 ACTACATCGAGGCGGCCT 60.442 61.111 24.13 24.13 36.03 5.19
3822 4141 2.058595 ACTACATCGAGGCGGCCTT 61.059 57.895 24.71 9.36 31.76 4.35
3823 4142 1.300233 CTACATCGAGGCGGCCTTC 60.300 63.158 24.71 14.91 31.76 3.46
3824 4143 1.739338 CTACATCGAGGCGGCCTTCT 61.739 60.000 24.71 8.06 31.76 2.85
3825 4144 2.016393 TACATCGAGGCGGCCTTCTG 62.016 60.000 24.71 21.12 31.76 3.02
3826 4145 4.537433 ATCGAGGCGGCCTTCTGC 62.537 66.667 24.71 9.29 43.83 4.26
3837 4156 2.877043 GCCTTCTGCCACCATTATTG 57.123 50.000 0.00 0.00 0.00 1.90
3849 4168 3.113260 CCATTATTGGGAGACGAGGAC 57.887 52.381 0.00 0.00 39.56 3.85
3850 4169 2.545952 CCATTATTGGGAGACGAGGACG 60.546 54.545 0.00 0.00 41.38 4.79
3851 4170 5.056227 CCATTATTGGGAGACGAGGACGT 62.056 52.174 0.00 0.00 46.57 4.34
3861 4180 4.803426 GAGGACGTCGCTGCCCTG 62.803 72.222 9.92 0.00 0.00 4.45
3864 4183 4.803426 GACGTCGCTGCCCTGGAG 62.803 72.222 0.00 0.00 0.00 3.86
3867 4186 4.704833 GTCGCTGCCCTGGAGCAA 62.705 66.667 8.31 0.00 43.52 3.91
3868 4187 4.704833 TCGCTGCCCTGGAGCAAC 62.705 66.667 8.31 6.05 43.52 4.17
3871 4190 2.743928 CTGCCCTGGAGCAACGTC 60.744 66.667 10.39 0.00 43.52 4.34
3872 4191 4.329545 TGCCCTGGAGCAACGTCC 62.330 66.667 7.29 0.00 40.56 4.79
3873 4192 4.329545 GCCCTGGAGCAACGTCCA 62.330 66.667 0.00 0.00 44.82 4.02
3874 4193 2.358737 CCCTGGAGCAACGTCCAC 60.359 66.667 0.00 0.00 41.99 4.02
3875 4194 2.358737 CCTGGAGCAACGTCCACC 60.359 66.667 0.00 0.00 41.99 4.61
3876 4195 2.743718 CTGGAGCAACGTCCACCT 59.256 61.111 0.00 0.00 41.99 4.00
3877 4196 1.374758 CTGGAGCAACGTCCACCTC 60.375 63.158 0.00 0.00 41.99 3.85
3878 4197 2.047179 GGAGCAACGTCCACCTCC 60.047 66.667 7.65 7.65 36.51 4.30
3879 4198 2.047179 GAGCAACGTCCACCTCCC 60.047 66.667 0.00 0.00 0.00 4.30
3880 4199 3.607370 GAGCAACGTCCACCTCCCC 62.607 68.421 0.00 0.00 0.00 4.81
3881 4200 3.948719 GCAACGTCCACCTCCCCA 61.949 66.667 0.00 0.00 0.00 4.96
3882 4201 2.833227 CAACGTCCACCTCCCCAA 59.167 61.111 0.00 0.00 0.00 4.12
3883 4202 1.378762 CAACGTCCACCTCCCCAAT 59.621 57.895 0.00 0.00 0.00 3.16
3884 4203 0.616371 CAACGTCCACCTCCCCAATA 59.384 55.000 0.00 0.00 0.00 1.90
3885 4204 1.003812 CAACGTCCACCTCCCCAATAA 59.996 52.381 0.00 0.00 0.00 1.40
3886 4205 0.616891 ACGTCCACCTCCCCAATAAC 59.383 55.000 0.00 0.00 0.00 1.89
3887 4206 0.909623 CGTCCACCTCCCCAATAACT 59.090 55.000 0.00 0.00 0.00 2.24
3888 4207 1.406887 CGTCCACCTCCCCAATAACTG 60.407 57.143 0.00 0.00 0.00 3.16
3889 4208 1.064685 GTCCACCTCCCCAATAACTGG 60.065 57.143 0.00 0.00 45.97 4.00
3890 4209 0.395724 CCACCTCCCCAATAACTGGC 60.396 60.000 0.00 0.00 44.90 4.85
3891 4210 0.331278 CACCTCCCCAATAACTGGCA 59.669 55.000 0.00 0.00 44.90 4.92
3892 4211 0.331616 ACCTCCCCAATAACTGGCAC 59.668 55.000 0.00 0.00 44.90 5.01
3893 4212 0.395724 CCTCCCCAATAACTGGCACC 60.396 60.000 0.00 0.00 44.90 5.01
3894 4213 0.625849 CTCCCCAATAACTGGCACCT 59.374 55.000 0.00 0.00 44.90 4.00
3895 4214 0.331278 TCCCCAATAACTGGCACCTG 59.669 55.000 0.00 0.00 44.90 4.00
3896 4215 0.039618 CCCCAATAACTGGCACCTGT 59.960 55.000 0.00 0.00 44.90 4.00
3897 4216 1.463674 CCCAATAACTGGCACCTGTC 58.536 55.000 0.00 0.00 44.90 3.51
3898 4217 1.271871 CCCAATAACTGGCACCTGTCA 60.272 52.381 0.00 0.00 44.90 3.58
3907 4226 4.394712 CACCTGTCAGCCGACCCC 62.395 72.222 0.00 0.00 41.85 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.108687 TGGTTGTAGAGCAGAATCATACTTG 58.891 40.000 0.00 0.00 0.00 3.16
1 2 6.299805 TGGTTGTAGAGCAGAATCATACTT 57.700 37.500 0.00 0.00 0.00 2.24
4 5 6.653020 ACAATGGTTGTAGAGCAGAATCATA 58.347 36.000 0.00 0.00 43.27 2.15
7 8 5.163713 GGAACAATGGTTGTAGAGCAGAATC 60.164 44.000 0.00 0.00 44.59 2.52
8 9 4.702131 GGAACAATGGTTGTAGAGCAGAAT 59.298 41.667 0.00 0.00 44.59 2.40
9 10 4.072131 GGAACAATGGTTGTAGAGCAGAA 58.928 43.478 0.00 0.00 44.59 3.02
11 12 2.749621 GGGAACAATGGTTGTAGAGCAG 59.250 50.000 0.00 0.00 44.59 4.24
12 13 2.554344 GGGGAACAATGGTTGTAGAGCA 60.554 50.000 0.00 0.00 44.59 4.26
13 14 2.092323 GGGGAACAATGGTTGTAGAGC 58.908 52.381 0.00 0.00 44.59 4.09
14 15 3.347216 CAGGGGAACAATGGTTGTAGAG 58.653 50.000 0.00 0.00 44.59 2.43
15 16 2.041081 CCAGGGGAACAATGGTTGTAGA 59.959 50.000 0.00 0.00 44.59 2.59
16 17 2.041081 TCCAGGGGAACAATGGTTGTAG 59.959 50.000 0.00 0.00 44.59 2.74
17 18 2.066592 TCCAGGGGAACAATGGTTGTA 58.933 47.619 0.00 0.00 44.59 2.41
19 20 2.236489 ATCCAGGGGAACAATGGTTG 57.764 50.000 0.00 0.00 39.20 3.77
20 21 3.274281 AAATCCAGGGGAACAATGGTT 57.726 42.857 0.00 0.00 39.20 3.67
21 22 3.309848 CCTAAATCCAGGGGAACAATGGT 60.310 47.826 0.00 0.00 39.20 3.55
22 23 3.299503 CCTAAATCCAGGGGAACAATGG 58.700 50.000 0.00 0.00 39.44 3.16
23 24 3.981212 ACCTAAATCCAGGGGAACAATG 58.019 45.455 0.00 0.00 40.29 2.82
24 25 4.384868 CGTACCTAAATCCAGGGGAACAAT 60.385 45.833 0.00 0.00 40.29 2.71
25 26 3.054948 CGTACCTAAATCCAGGGGAACAA 60.055 47.826 0.00 0.00 40.29 2.83
26 27 2.502538 CGTACCTAAATCCAGGGGAACA 59.497 50.000 0.00 0.00 40.29 3.18
27 28 2.744166 GCGTACCTAAATCCAGGGGAAC 60.744 54.545 0.00 0.00 40.29 3.62
112 113 6.446318 TGCAACTCAATTTCTGGTAATTGAC 58.554 36.000 10.00 3.95 45.02 3.18
227 229 3.297979 GCGCAAAATCACATCAGTTAACG 59.702 43.478 0.30 0.00 0.00 3.18
242 244 6.442952 AGTATAAAACATCAAGTGCGCAAAA 58.557 32.000 14.00 0.00 0.00 2.44
247 249 6.176975 TCCAAGTATAAAACATCAAGTGCG 57.823 37.500 0.00 0.00 0.00 5.34
298 300 6.590656 ATCACCCATAATTAACAGGGAGAA 57.409 37.500 21.37 10.47 42.76 2.87
441 443 2.032550 CCAAAATATCAGTGCCTCTGCG 59.967 50.000 1.75 0.00 43.32 5.18
475 477 2.777494 CGTGCTTAGTTATCGACGACA 58.223 47.619 0.00 0.00 0.00 4.35
634 636 6.038936 CCATAATCATGTGAAGCACTCATTCA 59.961 38.462 0.00 0.00 36.14 2.57
635 637 6.039047 ACCATAATCATGTGAAGCACTCATTC 59.961 38.462 0.00 0.00 36.14 2.67
636 638 5.889853 ACCATAATCATGTGAAGCACTCATT 59.110 36.000 0.00 0.00 36.14 2.57
637 639 5.443283 ACCATAATCATGTGAAGCACTCAT 58.557 37.500 0.00 0.00 36.14 2.90
638 640 4.847198 ACCATAATCATGTGAAGCACTCA 58.153 39.130 0.00 0.00 35.11 3.41
639 641 5.817296 TGTACCATAATCATGTGAAGCACTC 59.183 40.000 0.00 0.00 35.11 3.51
640 642 5.586243 GTGTACCATAATCATGTGAAGCACT 59.414 40.000 0.00 0.00 35.11 4.40
641 643 5.586243 AGTGTACCATAATCATGTGAAGCAC 59.414 40.000 0.00 0.00 34.56 4.40
642 644 5.744171 AGTGTACCATAATCATGTGAAGCA 58.256 37.500 0.00 0.00 0.00 3.91
643 645 6.489675 CAAGTGTACCATAATCATGTGAAGC 58.510 40.000 0.00 0.00 0.00 3.86
644 646 6.093909 TGCAAGTGTACCATAATCATGTGAAG 59.906 38.462 0.00 0.00 0.00 3.02
645 647 5.942826 TGCAAGTGTACCATAATCATGTGAA 59.057 36.000 0.00 0.00 0.00 3.18
646 648 5.495640 TGCAAGTGTACCATAATCATGTGA 58.504 37.500 0.00 0.00 0.00 3.58
647 649 5.813717 CTGCAAGTGTACCATAATCATGTG 58.186 41.667 0.00 0.00 0.00 3.21
663 665 7.442090 GTGAAGCACTCATTCAACTGCAAGT 62.442 44.000 0.00 0.00 43.46 3.16
664 666 3.004002 TGAAGCACTCATTCAACTGCAAG 59.996 43.478 0.00 0.00 33.85 4.01
665 667 2.950975 TGAAGCACTCATTCAACTGCAA 59.049 40.909 0.00 0.00 33.85 4.08
666 668 2.291465 GTGAAGCACTCATTCAACTGCA 59.709 45.455 0.00 0.00 38.34 4.41
667 669 2.291465 TGTGAAGCACTCATTCAACTGC 59.709 45.455 0.00 0.00 38.34 4.40
668 670 4.214758 TCATGTGAAGCACTCATTCAACTG 59.785 41.667 0.00 0.00 38.34 3.16
669 671 4.392047 TCATGTGAAGCACTCATTCAACT 58.608 39.130 0.00 0.00 38.34 3.16
670 672 4.754372 TCATGTGAAGCACTCATTCAAC 57.246 40.909 0.00 0.00 38.34 3.18
671 673 5.970317 AATCATGTGAAGCACTCATTCAA 57.030 34.783 0.00 0.00 38.34 2.69
672 674 6.038936 CCATAATCATGTGAAGCACTCATTCA 59.961 38.462 0.00 0.00 36.14 2.57
673 675 6.039047 ACCATAATCATGTGAAGCACTCATTC 59.961 38.462 0.00 0.00 36.14 2.67
674 676 5.889853 ACCATAATCATGTGAAGCACTCATT 59.110 36.000 0.00 0.00 36.14 2.57
675 677 5.443283 ACCATAATCATGTGAAGCACTCAT 58.557 37.500 0.00 0.00 36.14 2.90
676 678 4.847198 ACCATAATCATGTGAAGCACTCA 58.153 39.130 0.00 0.00 35.11 3.41
677 679 5.817296 TGTACCATAATCATGTGAAGCACTC 59.183 40.000 0.00 0.00 35.11 3.51
678 680 5.586243 GTGTACCATAATCATGTGAAGCACT 59.414 40.000 0.00 0.00 35.11 4.40
679 681 5.586243 AGTGTACCATAATCATGTGAAGCAC 59.414 40.000 0.00 0.00 34.56 4.40
680 682 5.744171 AGTGTACCATAATCATGTGAAGCA 58.256 37.500 0.00 0.00 0.00 3.91
681 683 6.489675 CAAGTGTACCATAATCATGTGAAGC 58.510 40.000 0.00 0.00 0.00 3.86
682 684 6.093909 TGCAAGTGTACCATAATCATGTGAAG 59.906 38.462 0.00 0.00 0.00 3.02
683 685 5.942826 TGCAAGTGTACCATAATCATGTGAA 59.057 36.000 0.00 0.00 0.00 3.18
684 686 5.495640 TGCAAGTGTACCATAATCATGTGA 58.504 37.500 0.00 0.00 0.00 3.58
685 687 5.813717 CTGCAAGTGTACCATAATCATGTG 58.186 41.667 0.00 0.00 0.00 3.21
701 703 7.442090 GTGAAGCACTCATTCAACTGCAAGT 62.442 44.000 0.00 0.00 43.46 3.16
702 704 3.004002 TGAAGCACTCATTCAACTGCAAG 59.996 43.478 0.00 0.00 33.85 4.01
703 705 2.950975 TGAAGCACTCATTCAACTGCAA 59.049 40.909 0.00 0.00 33.85 4.08
704 706 2.291465 GTGAAGCACTCATTCAACTGCA 59.709 45.455 0.00 0.00 38.34 4.41
705 707 2.291465 TGTGAAGCACTCATTCAACTGC 59.709 45.455 0.00 0.00 38.34 4.40
706 708 4.214758 TCATGTGAAGCACTCATTCAACTG 59.785 41.667 0.00 0.00 38.34 3.16
707 709 4.392047 TCATGTGAAGCACTCATTCAACT 58.608 39.130 0.00 0.00 38.34 3.16
708 710 4.754372 TCATGTGAAGCACTCATTCAAC 57.246 40.909 0.00 0.00 38.34 3.18
709 711 4.380128 GCATCATGTGAAGCACTCATTCAA 60.380 41.667 5.44 0.00 38.34 2.69
710 712 3.128068 GCATCATGTGAAGCACTCATTCA 59.872 43.478 5.44 0.00 38.50 2.57
711 713 3.377485 AGCATCATGTGAAGCACTCATTC 59.623 43.478 12.09 0.00 40.83 2.67
712 714 3.353557 AGCATCATGTGAAGCACTCATT 58.646 40.909 12.09 0.00 40.83 2.57
713 715 3.000684 AGCATCATGTGAAGCACTCAT 57.999 42.857 12.09 0.00 40.83 2.90
714 716 2.484742 AGCATCATGTGAAGCACTCA 57.515 45.000 12.09 0.00 40.83 3.41
715 717 5.525012 TGTATAAGCATCATGTGAAGCACTC 59.475 40.000 12.09 0.46 40.83 3.51
716 718 5.295292 GTGTATAAGCATCATGTGAAGCACT 59.705 40.000 12.09 2.45 40.83 4.40
717 719 5.295292 AGTGTATAAGCATCATGTGAAGCAC 59.705 40.000 12.09 3.04 40.83 4.40
718 720 5.430886 AGTGTATAAGCATCATGTGAAGCA 58.569 37.500 12.09 0.00 40.83 3.91
719 721 5.998454 AGTGTATAAGCATCATGTGAAGC 57.002 39.130 2.22 2.22 38.88 3.86
720 722 6.183360 TGCAAGTGTATAAGCATCATGTGAAG 60.183 38.462 0.00 0.00 31.05 3.02
721 723 5.647225 TGCAAGTGTATAAGCATCATGTGAA 59.353 36.000 0.00 0.00 31.05 3.18
722 724 5.184711 TGCAAGTGTATAAGCATCATGTGA 58.815 37.500 0.00 0.00 31.05 3.58
723 725 5.488645 TGCAAGTGTATAAGCATCATGTG 57.511 39.130 0.00 0.00 31.05 3.21
724 726 5.746307 CTGCAAGTGTATAAGCATCATGT 57.254 39.130 0.00 0.00 36.28 3.21
740 742 2.624316 ACGCATCATTCAACTGCAAG 57.376 45.000 0.00 0.00 42.29 4.01
741 743 4.633565 TGTATACGCATCATTCAACTGCAA 59.366 37.500 0.00 0.00 35.64 4.08
742 744 4.033932 GTGTATACGCATCATTCAACTGCA 59.966 41.667 11.57 0.00 35.64 4.41
743 745 4.271049 AGTGTATACGCATCATTCAACTGC 59.729 41.667 18.25 0.00 0.00 4.40
744 746 5.973651 AGTGTATACGCATCATTCAACTG 57.026 39.130 18.25 0.00 0.00 3.16
745 747 5.220662 GCAAGTGTATACGCATCATTCAACT 60.221 40.000 18.25 0.00 0.00 3.16
746 748 4.963953 GCAAGTGTATACGCATCATTCAAC 59.036 41.667 18.25 0.00 0.00 3.18
747 749 4.633565 TGCAAGTGTATACGCATCATTCAA 59.366 37.500 18.25 0.00 0.00 2.69
748 750 4.187694 TGCAAGTGTATACGCATCATTCA 58.812 39.130 18.25 4.85 0.00 2.57
749 751 4.766007 CTGCAAGTGTATACGCATCATTC 58.234 43.478 18.25 2.55 33.15 2.67
750 752 4.801147 CTGCAAGTGTATACGCATCATT 57.199 40.909 18.25 1.30 33.15 2.57
765 767 7.118245 TCACTACTATGAACATTCAACTGCAAG 59.882 37.037 0.00 0.00 41.13 4.01
766 768 6.934083 TCACTACTATGAACATTCAACTGCAA 59.066 34.615 0.00 0.00 41.13 4.08
767 769 6.463360 TCACTACTATGAACATTCAACTGCA 58.537 36.000 0.00 0.00 41.13 4.41
768 770 6.456181 GCTCACTACTATGAACATTCAACTGC 60.456 42.308 0.00 0.00 41.13 4.40
769 771 6.815641 AGCTCACTACTATGAACATTCAACTG 59.184 38.462 0.00 0.00 41.13 3.16
770 772 6.940739 AGCTCACTACTATGAACATTCAACT 58.059 36.000 0.00 0.00 41.13 3.16
771 773 7.331934 TGAAGCTCACTACTATGAACATTCAAC 59.668 37.037 0.00 0.00 41.13 3.18
772 774 7.331934 GTGAAGCTCACTACTATGAACATTCAA 59.668 37.037 0.00 0.00 43.73 2.69
773 775 6.813649 GTGAAGCTCACTACTATGAACATTCA 59.186 38.462 8.50 0.00 43.73 2.57
774 776 7.227992 GTGAAGCTCACTACTATGAACATTC 57.772 40.000 8.50 0.00 43.73 2.67
789 791 6.239217 AGTACCATAATCATGTGAAGCTCA 57.761 37.500 0.00 0.00 0.00 4.26
790 792 8.839310 AATAGTACCATAATCATGTGAAGCTC 57.161 34.615 0.00 0.00 0.00 4.09
800 802 9.634021 TGCACCAAATTAATAGTACCATAATCA 57.366 29.630 0.00 0.00 0.00 2.57
802 804 9.640952 ACTGCACCAAATTAATAGTACCATAAT 57.359 29.630 0.00 0.00 0.00 1.28
813 815 6.869913 CACTCATTCAACTGCACCAAATTAAT 59.130 34.615 0.00 0.00 0.00 1.40
898 1045 2.278094 CGCACTCGTCGTATTGGTTAAG 59.722 50.000 0.00 0.00 0.00 1.85
906 1053 0.315951 CGTCATCGCACTCGTCGTAT 60.316 55.000 0.00 0.00 36.96 3.06
907 1054 1.059838 CGTCATCGCACTCGTCGTA 59.940 57.895 0.00 0.00 36.96 3.43
920 1067 2.052690 CCCTGGTCGGACTCGTCAT 61.053 63.158 8.23 0.00 37.69 3.06
921 1068 2.675423 CCCTGGTCGGACTCGTCA 60.675 66.667 8.23 0.00 37.69 4.35
988 1136 2.819595 CACCATCCAAGTCGGGCG 60.820 66.667 0.00 0.00 34.36 6.13
1055 1203 2.885554 GCCTTGTCAAATGGGATGAGGT 60.886 50.000 0.00 0.00 0.00 3.85
1111 1259 6.128336 CGAAGGTACTAGGATACATTACCTCG 60.128 46.154 6.47 7.98 43.30 4.63
1169 1323 4.212004 AGACAGTCACATGAACAACATTCG 59.788 41.667 0.00 0.00 37.07 3.34
1193 1351 4.471025 TCTTCATCCTCACTATTTCTGCCA 59.529 41.667 0.00 0.00 0.00 4.92
1282 1440 0.121197 TCTTCTCCCACCTCCCCATT 59.879 55.000 0.00 0.00 0.00 3.16
1419 1580 2.677914 TGCCTACTAGCTCCAGCATTA 58.322 47.619 0.48 0.00 45.16 1.90
1486 1647 2.046023 CCTCATCCAACGCTGGCA 60.046 61.111 0.00 0.00 43.17 4.92
1492 1653 1.516386 CCGTCGTCCTCATCCAACG 60.516 63.158 0.00 0.00 37.74 4.10
1546 1707 4.100189 CAGTTAGGGAATCACGAGAAGGAT 59.900 45.833 0.00 0.00 0.00 3.24
1651 1819 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1674 1858 4.864704 TTTAAAAGGAAGGACCATGTGC 57.135 40.909 0.00 0.00 42.04 4.57
1675 1859 6.127619 GGAGATTTAAAAGGAAGGACCATGTG 60.128 42.308 0.00 0.00 42.04 3.21
1676 1860 5.952347 GGAGATTTAAAAGGAAGGACCATGT 59.048 40.000 0.00 0.00 42.04 3.21
1677 1861 6.190587 AGGAGATTTAAAAGGAAGGACCATG 58.809 40.000 0.00 0.00 42.04 3.66
1845 2032 6.942005 TGAAGTACTGGACAATCATTTCATGT 59.058 34.615 0.00 0.00 0.00 3.21
1911 2098 4.298103 AGCATCTCCAGTCAATCAAACT 57.702 40.909 0.00 0.00 0.00 2.66
1923 2110 5.372343 TTGCTTTCCTATTAGCATCTCCA 57.628 39.130 0.00 0.00 45.92 3.86
1978 2165 1.899814 ACTTGTGTGCGGAGGATAAGA 59.100 47.619 0.00 0.00 0.00 2.10
2322 2616 4.628333 CAGGCTTGCCAATAAAAATGACAG 59.372 41.667 14.54 0.00 0.00 3.51
2323 2617 4.040217 ACAGGCTTGCCAATAAAAATGACA 59.960 37.500 14.54 0.00 0.00 3.58
2324 2618 4.568956 ACAGGCTTGCCAATAAAAATGAC 58.431 39.130 14.54 0.00 0.00 3.06
2325 2619 4.888326 ACAGGCTTGCCAATAAAAATGA 57.112 36.364 14.54 0.00 0.00 2.57
2376 2670 3.945981 TTGCTTCATACTGTACACGGA 57.054 42.857 0.00 0.00 0.00 4.69
2499 2793 5.365314 ACCATGGTGTTTCAACCTTTTGTAT 59.635 36.000 18.99 0.00 41.16 2.29
2557 2851 8.443160 CGAATGAAACAGTAAAGTGTATGTCAT 58.557 33.333 0.00 0.00 32.24 3.06
2659 2953 0.106569 TCAGCATTACAGGGCATGGG 60.107 55.000 3.46 0.00 0.00 4.00
2696 2990 0.403271 AGCCTTTCAGTGGTGCAGAT 59.597 50.000 0.00 0.00 0.00 2.90
2758 3052 4.030452 GCACCTGAACGTGGCAGC 62.030 66.667 11.96 3.52 34.16 5.25
2765 3059 1.073964 CAGAGTGATGCACCTGAACG 58.926 55.000 0.00 0.00 35.92 3.95
2790 3084 3.539604 GACCAAGATCTCACCCTTCATG 58.460 50.000 0.00 0.00 0.00 3.07
2843 3138 1.278127 TCAGTCCCGATTTGAGGAACC 59.722 52.381 0.00 0.00 32.81 3.62
2985 3280 6.508777 TCACAGCCAAAATAAGTTTGTTACC 58.491 36.000 0.24 0.00 44.46 2.85
2992 3287 6.909550 TGGTAATCACAGCCAAAATAAGTT 57.090 33.333 0.00 0.00 0.00 2.66
3012 3307 7.895759 ACAGAAAGCACAAATAATACAATGGT 58.104 30.769 0.00 0.00 0.00 3.55
3013 3308 8.761575 AACAGAAAGCACAAATAATACAATGG 57.238 30.769 0.00 0.00 0.00 3.16
3040 3335 9.040939 CATGTACGTATGTATCCAAATCAGAAA 57.959 33.333 0.00 0.00 32.11 2.52
3092 3387 1.391157 GCTTGACACCACAAGGGCAA 61.391 55.000 0.00 0.00 44.87 4.52
3103 3398 5.300969 TCATGCATTTAGAAGCTTGACAC 57.699 39.130 2.10 0.00 39.18 3.67
3125 3420 5.074929 TCCAGTCTATTTTGGGCATCCATAT 59.925 40.000 0.00 0.00 43.63 1.78
3132 3427 4.046286 ACAATCCAGTCTATTTTGGGCA 57.954 40.909 0.00 0.00 35.13 5.36
3252 3553 4.039609 AGCCCATTAATTCAGCCTATTTGC 59.960 41.667 0.00 0.00 0.00 3.68
3277 3578 2.279935 TTCGGTGTTTTACATGGGCT 57.720 45.000 0.00 0.00 0.00 5.19
3303 3604 2.622942 GTCACTGACAAAATTCAGCCCA 59.377 45.455 4.17 0.00 46.09 5.36
3313 3614 5.186797 ACCAATTGAAAAGGTCACTGACAAA 59.813 36.000 7.12 0.00 35.39 2.83
3354 3655 0.387929 GGATCCGACGTGGCAATCTA 59.612 55.000 0.00 0.00 37.80 1.98
3382 3683 7.319052 TGAACCCATGACTTTTTACTACCTA 57.681 36.000 0.00 0.00 0.00 3.08
3383 3684 6.195600 TGAACCCATGACTTTTTACTACCT 57.804 37.500 0.00 0.00 0.00 3.08
3386 3687 5.470777 CCGTTGAACCCATGACTTTTTACTA 59.529 40.000 0.00 0.00 0.00 1.82
3387 3688 4.277423 CCGTTGAACCCATGACTTTTTACT 59.723 41.667 0.00 0.00 0.00 2.24
3388 3689 4.542735 CCGTTGAACCCATGACTTTTTAC 58.457 43.478 0.00 0.00 0.00 2.01
3389 3690 3.004944 GCCGTTGAACCCATGACTTTTTA 59.995 43.478 0.00 0.00 0.00 1.52
3394 3713 1.303317 GGCCGTTGAACCCATGACT 60.303 57.895 0.00 0.00 0.00 3.41
3427 3746 3.681417 GGCGGTCGTAAACTGAAATTAGT 59.319 43.478 0.00 0.00 36.22 2.24
3475 3794 4.528531 TTTTCATTTGCGACCTTTTTGC 57.471 36.364 0.00 0.00 34.74 3.68
3505 3824 1.962807 CTCACCATTGGCCACTGAAAA 59.037 47.619 23.80 7.70 0.00 2.29
3520 3839 8.747538 AAATATGTTAACTTATGACCCTCACC 57.252 34.615 13.16 0.00 0.00 4.02
3537 3856 5.193099 AGGCCCACTACAAGAAATATGTT 57.807 39.130 0.00 0.00 32.27 2.71
3556 3875 1.933247 CTGTCAGATTTCGAGGAGGC 58.067 55.000 0.00 0.00 0.00 4.70
3557 3876 1.472376 GGCTGTCAGATTTCGAGGAGG 60.472 57.143 3.32 0.00 0.00 4.30
3558 3877 1.472376 GGGCTGTCAGATTTCGAGGAG 60.472 57.143 3.32 0.00 0.00 3.69
3559 3878 0.537188 GGGCTGTCAGATTTCGAGGA 59.463 55.000 3.32 0.00 0.00 3.71
3560 3879 0.462759 GGGGCTGTCAGATTTCGAGG 60.463 60.000 3.32 0.00 0.00 4.63
3561 3880 0.250234 TGGGGCTGTCAGATTTCGAG 59.750 55.000 3.32 0.00 0.00 4.04
3562 3881 0.250234 CTGGGGCTGTCAGATTTCGA 59.750 55.000 3.32 0.00 34.36 3.71
3563 3882 0.036010 ACTGGGGCTGTCAGATTTCG 60.036 55.000 3.32 0.00 36.22 3.46
3564 3883 1.680249 GGACTGGGGCTGTCAGATTTC 60.680 57.143 3.32 0.00 34.69 2.17
3565 3884 0.329596 GGACTGGGGCTGTCAGATTT 59.670 55.000 3.32 0.00 34.69 2.17
3566 3885 1.566298 GGGACTGGGGCTGTCAGATT 61.566 60.000 3.32 0.00 34.69 2.40
3567 3886 1.997874 GGGACTGGGGCTGTCAGAT 60.998 63.158 3.32 0.00 34.69 2.90
3568 3887 2.607750 GGGACTGGGGCTGTCAGA 60.608 66.667 3.32 0.00 34.69 3.27
3569 3888 2.067932 TTTGGGACTGGGGCTGTCAG 62.068 60.000 0.00 0.00 34.69 3.51
3570 3889 2.081787 TTTGGGACTGGGGCTGTCA 61.082 57.895 0.00 0.00 34.69 3.58
3571 3890 1.603739 GTTTGGGACTGGGGCTGTC 60.604 63.158 0.00 0.00 0.00 3.51
3572 3891 2.520968 GTTTGGGACTGGGGCTGT 59.479 61.111 0.00 0.00 0.00 4.40
3573 3892 2.283173 GGTTTGGGACTGGGGCTG 60.283 66.667 0.00 0.00 0.00 4.85
3574 3893 2.723334 TAGGGTTTGGGACTGGGGCT 62.723 60.000 0.00 0.00 0.00 5.19
3575 3894 2.211468 CTAGGGTTTGGGACTGGGGC 62.211 65.000 0.00 0.00 0.00 5.80
3576 3895 1.999346 CTAGGGTTTGGGACTGGGG 59.001 63.158 0.00 0.00 0.00 4.96
3577 3896 1.303282 GCTAGGGTTTGGGACTGGG 59.697 63.158 0.00 0.00 0.00 4.45
3578 3897 1.303282 GGCTAGGGTTTGGGACTGG 59.697 63.158 0.00 0.00 0.00 4.00
3579 3898 0.404040 TTGGCTAGGGTTTGGGACTG 59.596 55.000 0.00 0.00 0.00 3.51
3580 3899 0.698818 CTTGGCTAGGGTTTGGGACT 59.301 55.000 0.00 0.00 0.00 3.85
3581 3900 0.696501 TCTTGGCTAGGGTTTGGGAC 59.303 55.000 0.00 0.00 0.00 4.46
3582 3901 1.074889 GTTCTTGGCTAGGGTTTGGGA 59.925 52.381 0.00 0.00 0.00 4.37
3583 3902 1.075536 AGTTCTTGGCTAGGGTTTGGG 59.924 52.381 0.00 0.00 0.00 4.12
3584 3903 2.437413 GAGTTCTTGGCTAGGGTTTGG 58.563 52.381 0.00 0.00 0.00 3.28
3585 3904 2.076863 CGAGTTCTTGGCTAGGGTTTG 58.923 52.381 0.00 0.00 0.00 2.93
3586 3905 1.697982 ACGAGTTCTTGGCTAGGGTTT 59.302 47.619 0.00 0.00 0.00 3.27
3587 3906 1.275573 GACGAGTTCTTGGCTAGGGTT 59.724 52.381 0.00 0.00 0.00 4.11
3588 3907 0.896226 GACGAGTTCTTGGCTAGGGT 59.104 55.000 0.00 0.00 0.00 4.34
3589 3908 0.179134 CGACGAGTTCTTGGCTAGGG 60.179 60.000 0.00 0.00 0.00 3.53
3590 3909 0.179134 CCGACGAGTTCTTGGCTAGG 60.179 60.000 0.00 0.00 0.00 3.02
3591 3910 0.802607 GCCGACGAGTTCTTGGCTAG 60.803 60.000 0.00 0.00 42.44 3.42
3592 3911 1.214589 GCCGACGAGTTCTTGGCTA 59.785 57.895 0.00 0.00 42.44 3.93
3593 3912 2.048127 GCCGACGAGTTCTTGGCT 60.048 61.111 0.00 0.00 42.44 4.75
3594 3913 3.119096 GGCCGACGAGTTCTTGGC 61.119 66.667 0.00 0.00 44.98 4.52
3625 3944 2.353803 GCCGTAGTTCCATAGCCCTATG 60.354 54.545 8.07 8.07 41.86 2.23
3626 3945 1.900486 GCCGTAGTTCCATAGCCCTAT 59.100 52.381 0.00 0.00 0.00 2.57
3627 3946 1.335145 GCCGTAGTTCCATAGCCCTA 58.665 55.000 0.00 0.00 0.00 3.53
3628 3947 1.408453 GGCCGTAGTTCCATAGCCCT 61.408 60.000 0.00 0.00 34.23 5.19
3629 3948 1.070957 GGCCGTAGTTCCATAGCCC 59.929 63.158 0.00 0.00 34.23 5.19
3630 3949 1.300697 CGGCCGTAGTTCCATAGCC 60.301 63.158 19.50 0.00 37.03 3.93
3631 3950 1.954651 GCGGCCGTAGTTCCATAGC 60.955 63.158 28.70 0.15 0.00 2.97
3632 3951 0.179094 TTGCGGCCGTAGTTCCATAG 60.179 55.000 28.70 0.00 0.00 2.23
3633 3952 0.249676 TTTGCGGCCGTAGTTCCATA 59.750 50.000 28.70 7.13 0.00 2.74
3634 3953 1.003112 TTTGCGGCCGTAGTTCCAT 60.003 52.632 28.70 0.00 0.00 3.41
3635 3954 1.669760 CTTTGCGGCCGTAGTTCCA 60.670 57.895 28.70 12.30 0.00 3.53
3636 3955 2.396157 CCTTTGCGGCCGTAGTTCC 61.396 63.158 28.70 9.35 0.00 3.62
3637 3956 3.174788 CCTTTGCGGCCGTAGTTC 58.825 61.111 28.70 10.19 0.00 3.01
3646 3965 3.659092 TCGTGCTTGCCTTTGCGG 61.659 61.111 0.00 0.00 41.78 5.69
3647 3966 2.427410 GTCGTGCTTGCCTTTGCG 60.427 61.111 0.00 0.00 41.78 4.85
3648 3967 2.050077 GGTCGTGCTTGCCTTTGC 60.050 61.111 0.00 0.00 38.26 3.68
3649 3968 2.252260 CGGTCGTGCTTGCCTTTG 59.748 61.111 0.00 0.00 0.00 2.77
3650 3969 3.660111 GCGGTCGTGCTTGCCTTT 61.660 61.111 0.00 0.00 0.00 3.11
3672 3991 4.436998 GTCCGGACGAGGTGCCAG 62.437 72.222 20.85 0.00 0.00 4.85
3693 4012 1.294659 CTTCTTCACTGAGCCACGGC 61.295 60.000 0.00 0.00 42.33 5.68
3694 4013 0.671781 CCTTCTTCACTGAGCCACGG 60.672 60.000 0.00 0.00 0.00 4.94
3695 4014 0.318441 TCCTTCTTCACTGAGCCACG 59.682 55.000 0.00 0.00 0.00 4.94
3696 4015 1.620819 TCTCCTTCTTCACTGAGCCAC 59.379 52.381 0.00 0.00 0.00 5.01
3697 4016 2.015456 TCTCCTTCTTCACTGAGCCA 57.985 50.000 0.00 0.00 0.00 4.75
3698 4017 2.934801 GCTTCTCCTTCTTCACTGAGCC 60.935 54.545 0.00 0.00 0.00 4.70
3699 4018 2.345876 GCTTCTCCTTCTTCACTGAGC 58.654 52.381 0.00 0.00 0.00 4.26
3700 4019 2.354604 GGGCTTCTCCTTCTTCACTGAG 60.355 54.545 0.00 0.00 34.39 3.35
3701 4020 1.625818 GGGCTTCTCCTTCTTCACTGA 59.374 52.381 0.00 0.00 34.39 3.41
3702 4021 1.674221 CGGGCTTCTCCTTCTTCACTG 60.674 57.143 0.00 0.00 34.39 3.66
3703 4022 0.610687 CGGGCTTCTCCTTCTTCACT 59.389 55.000 0.00 0.00 34.39 3.41
3704 4023 1.021920 GCGGGCTTCTCCTTCTTCAC 61.022 60.000 0.00 0.00 34.39 3.18
3705 4024 1.296715 GCGGGCTTCTCCTTCTTCA 59.703 57.895 0.00 0.00 34.39 3.02
3706 4025 1.811679 CGCGGGCTTCTCCTTCTTC 60.812 63.158 0.00 0.00 34.39 2.87
3707 4026 2.266055 CGCGGGCTTCTCCTTCTT 59.734 61.111 0.00 0.00 34.39 2.52
3708 4027 2.997897 ACGCGGGCTTCTCCTTCT 60.998 61.111 12.47 0.00 34.39 2.85
3709 4028 2.509561 GACGCGGGCTTCTCCTTC 60.510 66.667 12.47 0.00 34.39 3.46
3710 4029 4.436998 CGACGCGGGCTTCTCCTT 62.437 66.667 12.47 0.00 34.39 3.36
3755 4074 2.974698 GATGGAGAATGCGGGCGG 60.975 66.667 0.00 0.00 0.00 6.13
3756 4075 3.341043 CGATGGAGAATGCGGGCG 61.341 66.667 0.00 0.00 0.00 6.13
3757 4076 3.654020 GCGATGGAGAATGCGGGC 61.654 66.667 0.00 0.00 0.00 6.13
3758 4077 3.341043 CGCGATGGAGAATGCGGG 61.341 66.667 0.00 0.00 46.31 6.13
3761 4080 3.654020 GGGCGCGATGGAGAATGC 61.654 66.667 12.10 0.00 0.00 3.56
3762 4081 1.598962 ATGGGCGCGATGGAGAATG 60.599 57.895 12.10 0.00 0.00 2.67
3763 4082 1.598962 CATGGGCGCGATGGAGAAT 60.599 57.895 12.10 0.00 0.00 2.40
3764 4083 2.203056 CATGGGCGCGATGGAGAA 60.203 61.111 12.10 0.00 0.00 2.87
3765 4084 4.240103 CCATGGGCGCGATGGAGA 62.240 66.667 25.60 0.00 41.30 3.71
3790 4109 4.156622 TAGTGTCGGTCGCGCTCG 62.157 66.667 5.56 8.03 0.00 5.03
3791 4110 2.576317 GTAGTGTCGGTCGCGCTC 60.576 66.667 5.56 0.00 0.00 5.03
3792 4111 2.594119 GATGTAGTGTCGGTCGCGCT 62.594 60.000 5.56 0.00 0.00 5.92
3793 4112 2.202570 ATGTAGTGTCGGTCGCGC 60.203 61.111 0.00 0.00 0.00 6.86
3794 4113 1.933041 CGATGTAGTGTCGGTCGCG 60.933 63.158 0.00 0.00 35.55 5.87
3795 4114 0.589229 CTCGATGTAGTGTCGGTCGC 60.589 60.000 0.00 0.00 39.45 5.19
3796 4115 0.027716 CCTCGATGTAGTGTCGGTCG 59.972 60.000 0.00 0.00 39.45 4.79
3797 4116 0.248539 GCCTCGATGTAGTGTCGGTC 60.249 60.000 0.00 0.00 39.45 4.79
3798 4117 1.807886 GCCTCGATGTAGTGTCGGT 59.192 57.895 0.00 0.00 39.45 4.69
3799 4118 1.298413 CGCCTCGATGTAGTGTCGG 60.298 63.158 0.00 0.00 39.45 4.79
3800 4119 1.298413 CCGCCTCGATGTAGTGTCG 60.298 63.158 0.00 0.00 40.30 4.35
3801 4120 1.589196 GCCGCCTCGATGTAGTGTC 60.589 63.158 0.00 0.00 0.00 3.67
3802 4121 2.494918 GCCGCCTCGATGTAGTGT 59.505 61.111 0.00 0.00 0.00 3.55
3803 4122 2.279517 GGCCGCCTCGATGTAGTG 60.280 66.667 0.71 0.00 0.00 2.74
3804 4123 2.017559 GAAGGCCGCCTCGATGTAGT 62.018 60.000 13.72 0.00 30.89 2.73
3805 4124 1.300233 GAAGGCCGCCTCGATGTAG 60.300 63.158 13.72 0.00 30.89 2.74
3806 4125 1.756950 AGAAGGCCGCCTCGATGTA 60.757 57.895 13.72 0.00 30.89 2.29
3807 4126 3.077556 AGAAGGCCGCCTCGATGT 61.078 61.111 13.72 0.00 30.89 3.06
3808 4127 2.587194 CAGAAGGCCGCCTCGATG 60.587 66.667 13.72 8.19 30.89 3.84
3809 4128 4.537433 GCAGAAGGCCGCCTCGAT 62.537 66.667 13.72 0.00 36.11 3.59
3818 4137 1.410153 CCAATAATGGTGGCAGAAGGC 59.590 52.381 0.00 0.00 42.18 4.35
3819 4138 2.034124 CCCAATAATGGTGGCAGAAGG 58.966 52.381 0.00 0.00 46.01 3.46
3820 4139 2.954318 CTCCCAATAATGGTGGCAGAAG 59.046 50.000 0.00 0.00 46.01 2.85
3821 4140 2.580322 TCTCCCAATAATGGTGGCAGAA 59.420 45.455 0.00 0.00 46.01 3.02
3822 4141 2.092429 GTCTCCCAATAATGGTGGCAGA 60.092 50.000 0.00 0.00 46.01 4.26
3823 4142 2.301346 GTCTCCCAATAATGGTGGCAG 58.699 52.381 0.00 0.00 46.01 4.85
3824 4143 1.408127 CGTCTCCCAATAATGGTGGCA 60.408 52.381 0.00 0.00 46.01 4.92
3825 4144 1.134220 TCGTCTCCCAATAATGGTGGC 60.134 52.381 0.00 0.00 46.01 5.01
3826 4145 2.485479 CCTCGTCTCCCAATAATGGTGG 60.485 54.545 0.00 0.00 46.01 4.61
3827 4146 2.434336 TCCTCGTCTCCCAATAATGGTG 59.566 50.000 0.00 0.00 46.01 4.17
3828 4147 2.434702 GTCCTCGTCTCCCAATAATGGT 59.565 50.000 0.00 0.00 46.01 3.55
3830 4149 2.743938 CGTCCTCGTCTCCCAATAATG 58.256 52.381 0.00 0.00 0.00 1.90
3844 4163 4.803426 CAGGGCAGCGACGTCCTC 62.803 72.222 10.58 1.88 0.00 3.71
3847 4166 4.803426 CTCCAGGGCAGCGACGTC 62.803 72.222 5.18 5.18 0.00 4.34
3850 4169 4.704833 TTGCTCCAGGGCAGCGAC 62.705 66.667 0.00 0.00 43.39 5.19
3851 4170 4.704833 GTTGCTCCAGGGCAGCGA 62.705 66.667 0.00 0.00 43.39 4.93
3854 4173 2.743928 GACGTTGCTCCAGGGCAG 60.744 66.667 0.00 0.00 43.39 4.85
3855 4174 4.329545 GGACGTTGCTCCAGGGCA 62.330 66.667 0.00 0.00 40.74 5.36
3856 4175 4.329545 TGGACGTTGCTCCAGGGC 62.330 66.667 0.00 0.00 35.23 5.19
3857 4176 2.358737 GTGGACGTTGCTCCAGGG 60.359 66.667 0.00 0.00 41.23 4.45
3858 4177 2.358737 GGTGGACGTTGCTCCAGG 60.359 66.667 0.00 0.00 41.23 4.45
3859 4178 1.374758 GAGGTGGACGTTGCTCCAG 60.375 63.158 0.00 0.00 41.23 3.86
3860 4179 2.741092 GAGGTGGACGTTGCTCCA 59.259 61.111 0.00 0.00 38.05 3.86
3861 4180 2.047179 GGAGGTGGACGTTGCTCC 60.047 66.667 0.00 0.00 0.00 4.70
3862 4181 2.047179 GGGAGGTGGACGTTGCTC 60.047 66.667 0.00 0.00 0.00 4.26
3863 4182 3.637273 GGGGAGGTGGACGTTGCT 61.637 66.667 0.00 0.00 0.00 3.91
3864 4183 2.764637 ATTGGGGAGGTGGACGTTGC 62.765 60.000 0.00 0.00 0.00 4.17
3865 4184 0.616371 TATTGGGGAGGTGGACGTTG 59.384 55.000 0.00 0.00 0.00 4.10
3866 4185 1.003928 GTTATTGGGGAGGTGGACGTT 59.996 52.381 0.00 0.00 0.00 3.99
3867 4186 0.616891 GTTATTGGGGAGGTGGACGT 59.383 55.000 0.00 0.00 0.00 4.34
3868 4187 0.909623 AGTTATTGGGGAGGTGGACG 59.090 55.000 0.00 0.00 0.00 4.79
3869 4188 1.064685 CCAGTTATTGGGGAGGTGGAC 60.065 57.143 0.00 0.00 43.75 4.02
3870 4189 1.295020 CCAGTTATTGGGGAGGTGGA 58.705 55.000 0.00 0.00 43.75 4.02
3871 4190 3.903208 CCAGTTATTGGGGAGGTGG 57.097 57.895 0.00 0.00 43.75 4.61
3880 4199 1.470098 GCTGACAGGTGCCAGTTATTG 59.530 52.381 4.26 0.00 33.19 1.90
3881 4200 1.826385 GCTGACAGGTGCCAGTTATT 58.174 50.000 4.26 0.00 33.19 1.40
3882 4201 3.558674 GCTGACAGGTGCCAGTTAT 57.441 52.632 4.26 0.00 33.19 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.