Multiple sequence alignment - TraesCS2A01G340300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G340300 chr2A 100.000 2166 0 0 1 2166 575374861 575372696 0.000000e+00 4000.0
1 TraesCS2A01G340300 chr2A 100.000 451 0 0 2522 2972 575372340 575371890 0.000000e+00 833.0
2 TraesCS2A01G340300 chr2D 94.668 2138 72 14 1 2114 407633366 407631247 0.000000e+00 3278.0
3 TraesCS2A01G340300 chr2D 97.059 34 1 0 2115 2148 407631219 407631186 1.150000e-04 58.4
4 TraesCS2A01G340300 chr2B 95.041 1714 56 5 422 2114 483135711 483134006 0.000000e+00 2667.0
5 TraesCS2A01G340300 chr2B 91.317 334 8 4 1 332 483136027 483135713 1.260000e-118 436.0
6 TraesCS2A01G340300 chr2B 100.000 47 0 0 2115 2161 483133978 483133932 1.470000e-13 87.9
7 TraesCS2A01G340300 chr4B 82.653 98 12 2 2811 2908 427018745 427018653 6.830000e-12 82.4
8 TraesCS2A01G340300 chr6A 96.970 33 1 0 454 486 608296744 608296712 4.140000e-04 56.5
9 TraesCS2A01G340300 chr5D 94.286 35 1 1 446 479 72611104 72611138 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G340300 chr2A 575371890 575374861 2971 True 2416.500000 4000 100.000000 1 2972 2 chr2A.!!$R1 2971
1 TraesCS2A01G340300 chr2D 407631186 407633366 2180 True 1668.200000 3278 95.863500 1 2148 2 chr2D.!!$R1 2147
2 TraesCS2A01G340300 chr2B 483133932 483136027 2095 True 1063.633333 2667 95.452667 1 2161 3 chr2B.!!$R1 2160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 577 0.459585 TACGAGCATCCGGTTCAAGC 60.46 55.0 0.0 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2536 2596 0.167251 CCGCAAATTTTACCGTCGCT 59.833 50.0 0.0 0.0 0.0 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.517316 GCAAACAGTAGCCAAGGACG 59.483 55.000 0.00 0.00 0.00 4.79
263 273 3.118920 TGGCATACACGCTACATTGTACT 60.119 43.478 0.00 0.00 31.09 2.73
264 274 4.098196 TGGCATACACGCTACATTGTACTA 59.902 41.667 0.00 0.00 31.09 1.82
265 275 4.680110 GGCATACACGCTACATTGTACTAG 59.320 45.833 0.00 0.00 31.09 2.57
266 276 5.279384 GCATACACGCTACATTGTACTAGT 58.721 41.667 0.00 0.00 31.09 2.57
314 324 4.344102 AGCTGGCTAATTAACGACAGGATA 59.656 41.667 9.08 0.00 0.00 2.59
337 347 9.289782 GATAATGCATCAAAATTACTACTCCCT 57.710 33.333 0.00 0.00 33.46 4.20
338 348 7.573968 AATGCATCAAAATTACTACTCCCTC 57.426 36.000 0.00 0.00 0.00 4.30
344 354 6.023603 TCAAAATTACTACTCCCTCTGTCCT 58.976 40.000 0.00 0.00 0.00 3.85
348 358 9.725206 AAAATTACTACTCCCTCTGTCCTATAA 57.275 33.333 0.00 0.00 0.00 0.98
349 359 9.900112 AAATTACTACTCCCTCTGTCCTATAAT 57.100 33.333 0.00 0.00 0.00 1.28
350 360 8.887264 ATTACTACTCCCTCTGTCCTATAATG 57.113 38.462 0.00 0.00 0.00 1.90
351 361 6.282568 ACTACTCCCTCTGTCCTATAATGT 57.717 41.667 0.00 0.00 0.00 2.71
414 426 8.786826 AATGTTTTACATTATGAGACGGAGAA 57.213 30.769 0.00 0.00 46.11 2.87
435 447 7.093858 GGAGAAAGTACTTACTACAGTGGTCAT 60.094 40.741 8.92 0.00 34.99 3.06
565 577 0.459585 TACGAGCATCCGGTTCAAGC 60.460 55.000 0.00 0.00 0.00 4.01
587 599 1.810030 GTAGGCTGTAGCACCGCAC 60.810 63.158 6.18 0.00 44.36 5.34
768 780 2.299013 ACGAACATGAGCTAGTTGACCA 59.701 45.455 0.00 0.00 0.00 4.02
786 798 4.225208 GACCACGAGGATTTATACTACGC 58.775 47.826 5.68 0.00 38.69 4.42
787 799 3.633525 ACCACGAGGATTTATACTACGCA 59.366 43.478 5.68 0.00 38.69 5.24
788 800 4.280174 ACCACGAGGATTTATACTACGCAT 59.720 41.667 5.68 0.00 38.69 4.73
789 801 4.621460 CCACGAGGATTTATACTACGCATG 59.379 45.833 0.00 0.00 36.89 4.06
790 802 4.621460 CACGAGGATTTATACTACGCATGG 59.379 45.833 0.00 0.00 0.00 3.66
791 803 4.174009 CGAGGATTTATACTACGCATGGG 58.826 47.826 8.44 8.44 0.00 4.00
792 804 4.321750 CGAGGATTTATACTACGCATGGGT 60.322 45.833 20.10 20.10 0.00 4.51
820 832 2.820197 TGATCGATCGATCCGATTCCTT 59.180 45.455 40.61 16.49 47.00 3.36
882 894 1.579698 CGCCATCTGATTGACTCTGG 58.420 55.000 0.00 0.00 0.00 3.86
884 896 1.407851 GCCATCTGATTGACTCTGGCA 60.408 52.381 10.46 0.00 46.54 4.92
938 950 0.605589 CATCGCCATCTACTCCTCCC 59.394 60.000 0.00 0.00 0.00 4.30
1029 1041 3.793144 GTGAGCAAGAAGGCCGCG 61.793 66.667 0.00 0.00 0.00 6.46
1215 1248 3.034635 GCCTGAGAAGGAGAAGATGGTA 58.965 50.000 0.00 0.00 0.00 3.25
1231 1264 2.040939 TGGTACAGGAACACGAGGAAA 58.959 47.619 0.00 0.00 0.00 3.13
1232 1265 2.635915 TGGTACAGGAACACGAGGAAAT 59.364 45.455 0.00 0.00 0.00 2.17
1395 1428 3.051392 GAAATGCAAGGACGCCGGG 62.051 63.158 2.18 0.00 0.00 5.73
1865 1898 1.995626 CCCCGATGGAGGTTGGAGT 60.996 63.158 0.00 0.00 35.39 3.85
1957 1990 2.586079 CGGTGGCTATGGAGTGCG 60.586 66.667 0.00 0.00 0.00 5.34
2162 2222 2.921126 GGTTATATACCACGTCGTCCG 58.079 52.381 0.00 0.00 46.92 4.79
2163 2223 2.310577 GTTATATACCACGTCGTCCGC 58.689 52.381 0.00 0.00 41.42 5.54
2164 2224 1.592064 TATATACCACGTCGTCCGCA 58.408 50.000 0.00 0.00 41.42 5.69
2165 2225 0.029834 ATATACCACGTCGTCCGCAC 59.970 55.000 0.00 0.00 41.42 5.34
2538 2598 3.472533 CGAGAAGTGAGCAGCAGC 58.527 61.111 0.00 0.00 42.56 5.25
2548 2608 3.249999 GCAGCAGCGACGGTAAAA 58.750 55.556 0.00 0.00 0.00 1.52
2549 2609 1.794222 GCAGCAGCGACGGTAAAAT 59.206 52.632 0.00 0.00 0.00 1.82
2550 2610 0.168128 GCAGCAGCGACGGTAAAATT 59.832 50.000 0.00 0.00 0.00 1.82
2551 2611 1.401018 GCAGCAGCGACGGTAAAATTT 60.401 47.619 0.00 0.00 0.00 1.82
2552 2612 2.241722 CAGCAGCGACGGTAAAATTTG 58.758 47.619 0.00 0.00 0.00 2.32
2553 2613 0.981956 GCAGCGACGGTAAAATTTGC 59.018 50.000 0.00 0.00 0.00 3.68
2554 2614 1.246970 CAGCGACGGTAAAATTTGCG 58.753 50.000 0.00 0.00 0.00 4.85
2555 2615 0.167251 AGCGACGGTAAAATTTGCGG 59.833 50.000 0.00 0.37 0.00 5.69
2556 2616 1.400246 GCGACGGTAAAATTTGCGGC 61.400 55.000 0.00 0.00 0.00 6.53
2557 2617 0.167251 CGACGGTAAAATTTGCGGCT 59.833 50.000 0.00 0.00 0.00 5.52
2558 2618 1.613270 GACGGTAAAATTTGCGGCTG 58.387 50.000 0.00 0.00 0.00 4.85
2559 2619 0.388006 ACGGTAAAATTTGCGGCTGC 60.388 50.000 11.65 11.65 43.20 5.25
2571 2631 3.503363 GGCTGCACGGCATCAGTC 61.503 66.667 0.50 0.00 38.13 3.51
2572 2632 2.435586 GCTGCACGGCATCAGTCT 60.436 61.111 0.00 0.00 38.13 3.24
2573 2633 1.153568 GCTGCACGGCATCAGTCTA 60.154 57.895 0.00 0.00 38.13 2.59
2574 2634 1.150567 GCTGCACGGCATCAGTCTAG 61.151 60.000 0.00 0.00 38.13 2.43
2575 2635 1.150567 CTGCACGGCATCAGTCTAGC 61.151 60.000 0.00 0.00 38.13 3.42
2576 2636 1.142748 GCACGGCATCAGTCTAGCT 59.857 57.895 0.00 0.00 0.00 3.32
2577 2637 0.385751 GCACGGCATCAGTCTAGCTA 59.614 55.000 0.00 0.00 0.00 3.32
2578 2638 1.000283 GCACGGCATCAGTCTAGCTAT 60.000 52.381 0.00 0.00 0.00 2.97
2579 2639 2.229062 GCACGGCATCAGTCTAGCTATA 59.771 50.000 0.00 0.00 0.00 1.31
2580 2640 3.305403 GCACGGCATCAGTCTAGCTATAA 60.305 47.826 0.00 0.00 0.00 0.98
2581 2641 4.480541 CACGGCATCAGTCTAGCTATAAG 58.519 47.826 0.00 0.00 0.00 1.73
2582 2642 3.057174 ACGGCATCAGTCTAGCTATAAGC 60.057 47.826 0.00 0.00 42.84 3.09
2583 2643 3.057245 CGGCATCAGTCTAGCTATAAGCA 60.057 47.826 0.00 0.00 45.56 3.91
2584 2644 4.559502 CGGCATCAGTCTAGCTATAAGCAA 60.560 45.833 0.00 0.00 45.56 3.91
2585 2645 5.300752 GGCATCAGTCTAGCTATAAGCAAA 58.699 41.667 0.00 0.00 45.56 3.68
2586 2646 5.407995 GGCATCAGTCTAGCTATAAGCAAAG 59.592 44.000 0.00 0.00 45.56 2.77
2587 2647 5.407995 GCATCAGTCTAGCTATAAGCAAAGG 59.592 44.000 0.00 0.00 45.56 3.11
2588 2648 4.950050 TCAGTCTAGCTATAAGCAAAGGC 58.050 43.478 0.00 0.18 45.56 4.35
2589 2649 3.738282 CAGTCTAGCTATAAGCAAAGGCG 59.262 47.826 0.00 0.00 45.56 5.52
2590 2650 3.637229 AGTCTAGCTATAAGCAAAGGCGA 59.363 43.478 0.00 0.00 45.56 5.54
2591 2651 4.282195 AGTCTAGCTATAAGCAAAGGCGAT 59.718 41.667 0.00 0.00 45.56 4.58
2592 2652 4.991687 GTCTAGCTATAAGCAAAGGCGATT 59.008 41.667 0.00 0.00 45.56 3.34
2593 2653 4.991056 TCTAGCTATAAGCAAAGGCGATTG 59.009 41.667 0.00 2.24 45.56 2.67
2594 2654 3.545703 AGCTATAAGCAAAGGCGATTGT 58.454 40.909 1.22 0.00 45.56 2.71
2595 2655 4.703897 AGCTATAAGCAAAGGCGATTGTA 58.296 39.130 1.22 0.00 45.56 2.41
2596 2656 4.511826 AGCTATAAGCAAAGGCGATTGTAC 59.488 41.667 1.22 0.00 45.56 2.90
2597 2657 6.750569 AGCTATAAGCAAAGGCGATTGTACG 61.751 44.000 1.22 0.00 45.56 3.67
2598 2658 9.756054 TAGCTATAAGCAAAGGCGATTGTACGT 62.756 40.741 1.22 0.00 45.56 3.57
2599 2659 9.756054 AGCTATAAGCAAAGGCGATTGTACGTA 62.756 40.741 1.22 0.00 45.56 3.57
2600 2660 2.430828 GCAAAGGCGATTGTACGTAC 57.569 50.000 18.90 18.90 35.59 3.67
2601 2661 1.061566 GCAAAGGCGATTGTACGTACC 59.938 52.381 22.43 6.40 35.59 3.34
2602 2662 1.322338 CAAAGGCGATTGTACGTACCG 59.678 52.381 22.43 18.65 35.59 4.02
2603 2663 0.803380 AAGGCGATTGTACGTACCGC 60.803 55.000 28.35 28.35 44.45 5.68
2604 2664 1.226773 GGCGATTGTACGTACCGCT 60.227 57.895 31.87 16.25 44.56 5.52
2605 2665 0.029300 GGCGATTGTACGTACCGCTA 59.971 55.000 31.87 15.20 44.56 4.26
2606 2666 1.533756 GGCGATTGTACGTACCGCTAA 60.534 52.381 31.87 18.76 44.56 3.09
2607 2667 1.777461 GCGATTGTACGTACCGCTAAG 59.223 52.381 28.70 15.63 42.24 2.18
2608 2668 1.777461 CGATTGTACGTACCGCTAAGC 59.223 52.381 22.43 11.74 0.00 3.09
2609 2669 2.792196 CGATTGTACGTACCGCTAAGCA 60.792 50.000 22.43 0.00 0.00 3.91
2610 2670 2.721274 TTGTACGTACCGCTAAGCAA 57.279 45.000 22.43 5.16 0.00 3.91
2611 2671 1.981254 TGTACGTACCGCTAAGCAAC 58.019 50.000 22.43 0.00 0.00 4.17
2612 2672 1.269174 TGTACGTACCGCTAAGCAACA 59.731 47.619 22.43 0.00 0.00 3.33
2613 2673 1.916000 GTACGTACCGCTAAGCAACAG 59.084 52.381 15.00 0.00 0.00 3.16
2614 2674 1.012486 ACGTACCGCTAAGCAACAGC 61.012 55.000 0.00 0.00 35.61 4.40
2615 2675 1.011968 CGTACCGCTAAGCAACAGCA 61.012 55.000 5.27 0.00 39.04 4.41
2616 2676 0.721718 GTACCGCTAAGCAACAGCAG 59.278 55.000 5.27 0.00 39.04 4.24
2617 2677 1.019278 TACCGCTAAGCAACAGCAGC 61.019 55.000 5.27 0.00 39.04 5.25
2618 2678 2.327343 CCGCTAAGCAACAGCAGCA 61.327 57.895 0.00 0.00 39.04 4.41
2619 2679 1.134075 CGCTAAGCAACAGCAGCAG 59.866 57.895 0.00 0.00 39.04 4.24
2620 2680 1.154073 GCTAAGCAACAGCAGCAGC 60.154 57.895 0.00 0.00 38.93 5.25
2621 2681 1.859427 GCTAAGCAACAGCAGCAGCA 61.859 55.000 3.17 0.00 45.49 4.41
2622 2682 0.594602 CTAAGCAACAGCAGCAGCAA 59.405 50.000 3.17 0.00 45.49 3.91
2623 2683 0.311790 TAAGCAACAGCAGCAGCAAC 59.688 50.000 3.17 0.00 45.49 4.17
2624 2684 1.669049 AAGCAACAGCAGCAGCAACA 61.669 50.000 3.17 0.00 45.49 3.33
2625 2685 1.227031 GCAACAGCAGCAGCAACAA 60.227 52.632 3.17 0.00 45.49 2.83
2626 2686 1.485032 GCAACAGCAGCAGCAACAAC 61.485 55.000 3.17 0.00 45.49 3.32
2627 2687 0.179132 CAACAGCAGCAGCAACAACA 60.179 50.000 3.17 0.00 45.49 3.33
2628 2688 0.531657 AACAGCAGCAGCAACAACAA 59.468 45.000 3.17 0.00 45.49 2.83
2629 2689 0.179129 ACAGCAGCAGCAACAACAAC 60.179 50.000 3.17 0.00 45.49 3.32
2630 2690 0.179132 CAGCAGCAGCAACAACAACA 60.179 50.000 3.17 0.00 45.49 3.33
2631 2691 0.531657 AGCAGCAGCAACAACAACAA 59.468 45.000 3.17 0.00 45.49 2.83
2632 2692 0.925466 GCAGCAGCAACAACAACAAG 59.075 50.000 0.00 0.00 41.58 3.16
2633 2693 1.469595 GCAGCAGCAACAACAACAAGA 60.470 47.619 0.00 0.00 41.58 3.02
2634 2694 2.878580 CAGCAGCAACAACAACAAGAA 58.121 42.857 0.00 0.00 0.00 2.52
2635 2695 2.855963 CAGCAGCAACAACAACAAGAAG 59.144 45.455 0.00 0.00 0.00 2.85
2636 2696 1.589779 GCAGCAACAACAACAAGAAGC 59.410 47.619 0.00 0.00 0.00 3.86
2637 2697 2.878580 CAGCAACAACAACAAGAAGCA 58.121 42.857 0.00 0.00 0.00 3.91
2638 2698 2.855963 CAGCAACAACAACAAGAAGCAG 59.144 45.455 0.00 0.00 0.00 4.24
2639 2699 2.493278 AGCAACAACAACAAGAAGCAGT 59.507 40.909 0.00 0.00 0.00 4.40
2640 2700 3.056607 AGCAACAACAACAAGAAGCAGTT 60.057 39.130 0.00 0.00 0.00 3.16
2646 2706 2.639751 CAACAAGAAGCAGTTGTACGC 58.360 47.619 0.00 0.00 40.06 4.42
2647 2707 1.948104 ACAAGAAGCAGTTGTACGCA 58.052 45.000 0.00 0.00 36.35 5.24
2648 2708 2.285083 ACAAGAAGCAGTTGTACGCAA 58.715 42.857 0.00 0.00 36.35 4.85
2649 2709 2.287915 ACAAGAAGCAGTTGTACGCAAG 59.712 45.455 0.00 0.00 36.35 4.01
2650 2710 2.526304 AGAAGCAGTTGTACGCAAGA 57.474 45.000 0.00 0.00 43.62 3.02
2651 2711 2.833794 AGAAGCAGTTGTACGCAAGAA 58.166 42.857 0.00 0.00 43.62 2.52
2652 2712 3.403038 AGAAGCAGTTGTACGCAAGAAT 58.597 40.909 0.00 0.00 43.62 2.40
2653 2713 3.433615 AGAAGCAGTTGTACGCAAGAATC 59.566 43.478 0.00 0.00 43.62 2.52
2654 2714 3.045601 AGCAGTTGTACGCAAGAATCT 57.954 42.857 0.00 0.00 43.62 2.40
2655 2715 4.188247 AGCAGTTGTACGCAAGAATCTA 57.812 40.909 0.00 0.00 43.62 1.98
2656 2716 3.927142 AGCAGTTGTACGCAAGAATCTAC 59.073 43.478 0.00 0.00 43.62 2.59
2657 2717 3.241678 GCAGTTGTACGCAAGAATCTACG 60.242 47.826 4.37 4.37 43.62 3.51
2658 2718 3.303495 CAGTTGTACGCAAGAATCTACGG 59.697 47.826 9.81 0.00 43.62 4.02
2659 2719 3.192001 AGTTGTACGCAAGAATCTACGGA 59.808 43.478 9.81 0.00 43.62 4.69
2660 2720 3.853831 TGTACGCAAGAATCTACGGAA 57.146 42.857 9.81 0.00 43.62 4.30
2661 2721 4.380841 TGTACGCAAGAATCTACGGAAT 57.619 40.909 9.81 0.00 43.62 3.01
2662 2722 4.751060 TGTACGCAAGAATCTACGGAATT 58.249 39.130 9.81 0.00 43.62 2.17
2663 2723 4.565166 TGTACGCAAGAATCTACGGAATTG 59.435 41.667 9.81 0.00 43.62 2.32
2664 2724 3.857052 ACGCAAGAATCTACGGAATTGA 58.143 40.909 9.81 0.00 43.62 2.57
2665 2725 4.250464 ACGCAAGAATCTACGGAATTGAA 58.750 39.130 9.81 0.00 43.62 2.69
2666 2726 4.330074 ACGCAAGAATCTACGGAATTGAAG 59.670 41.667 9.81 0.00 43.62 3.02
2667 2727 4.330074 CGCAAGAATCTACGGAATTGAAGT 59.670 41.667 0.00 0.00 43.02 3.01
2668 2728 5.563842 GCAAGAATCTACGGAATTGAAGTG 58.436 41.667 0.00 0.00 0.00 3.16
2669 2729 5.447818 GCAAGAATCTACGGAATTGAAGTGG 60.448 44.000 0.00 0.00 0.00 4.00
2670 2730 5.422214 AGAATCTACGGAATTGAAGTGGT 57.578 39.130 0.00 0.00 0.00 4.16
2671 2731 5.420409 AGAATCTACGGAATTGAAGTGGTC 58.580 41.667 0.00 0.00 0.00 4.02
2672 2732 3.226346 TCTACGGAATTGAAGTGGTCG 57.774 47.619 0.00 0.00 0.00 4.79
2673 2733 2.094390 TCTACGGAATTGAAGTGGTCGG 60.094 50.000 0.00 0.00 0.00 4.79
2674 2734 0.321298 ACGGAATTGAAGTGGTCGGG 60.321 55.000 0.00 0.00 0.00 5.14
2675 2735 0.036765 CGGAATTGAAGTGGTCGGGA 60.037 55.000 0.00 0.00 0.00 5.14
2676 2736 1.739067 GGAATTGAAGTGGTCGGGAG 58.261 55.000 0.00 0.00 0.00 4.30
2677 2737 1.003233 GGAATTGAAGTGGTCGGGAGT 59.997 52.381 0.00 0.00 0.00 3.85
2678 2738 2.235402 GGAATTGAAGTGGTCGGGAGTA 59.765 50.000 0.00 0.00 0.00 2.59
2679 2739 3.118371 GGAATTGAAGTGGTCGGGAGTAT 60.118 47.826 0.00 0.00 0.00 2.12
2680 2740 4.100498 GGAATTGAAGTGGTCGGGAGTATA 59.900 45.833 0.00 0.00 0.00 1.47
2681 2741 4.667519 ATTGAAGTGGTCGGGAGTATAC 57.332 45.455 0.00 0.00 0.00 1.47
2682 2742 2.381911 TGAAGTGGTCGGGAGTATACC 58.618 52.381 0.00 0.00 0.00 2.73
2683 2743 2.024655 TGAAGTGGTCGGGAGTATACCT 60.025 50.000 0.00 0.00 34.23 3.08
2684 2744 2.068834 AGTGGTCGGGAGTATACCTG 57.931 55.000 0.00 0.00 37.63 4.00
2685 2745 1.038280 GTGGTCGGGAGTATACCTGG 58.962 60.000 0.00 0.00 36.97 4.45
2686 2746 0.757935 TGGTCGGGAGTATACCTGGC 60.758 60.000 0.00 0.00 39.91 4.85
2687 2747 2.047769 GTCGGGAGTATACCTGGCC 58.952 63.158 0.00 0.00 35.12 5.36
2688 2748 0.757935 GTCGGGAGTATACCTGGCCA 60.758 60.000 4.71 4.71 35.12 5.36
2689 2749 0.190069 TCGGGAGTATACCTGGCCAT 59.810 55.000 5.51 0.00 36.97 4.40
2690 2750 1.430075 TCGGGAGTATACCTGGCCATA 59.570 52.381 5.51 0.00 36.97 2.74
2691 2751 2.158279 TCGGGAGTATACCTGGCCATAA 60.158 50.000 5.51 0.00 36.97 1.90
2692 2752 2.028385 CGGGAGTATACCTGGCCATAAC 60.028 54.545 5.51 0.00 33.06 1.89
2693 2753 3.248888 GGGAGTATACCTGGCCATAACT 58.751 50.000 5.51 5.54 0.00 2.24
2694 2754 3.261137 GGGAGTATACCTGGCCATAACTC 59.739 52.174 5.51 14.31 0.00 3.01
2695 2755 3.056749 GGAGTATACCTGGCCATAACTCG 60.057 52.174 5.51 0.00 0.00 4.18
2696 2756 2.897969 AGTATACCTGGCCATAACTCGG 59.102 50.000 5.51 5.16 0.00 4.63
2697 2757 1.056660 ATACCTGGCCATAACTCGGG 58.943 55.000 5.51 4.26 0.00 5.14
2698 2758 0.325860 TACCTGGCCATAACTCGGGT 60.326 55.000 5.51 11.24 42.30 5.28
2699 2759 1.146263 CCTGGCCATAACTCGGGTC 59.854 63.158 5.51 0.00 0.00 4.46
2700 2760 1.227263 CTGGCCATAACTCGGGTCG 60.227 63.158 5.51 0.00 0.00 4.79
2701 2761 2.108362 GGCCATAACTCGGGTCGG 59.892 66.667 0.00 0.00 0.00 4.79
2702 2762 2.108362 GCCATAACTCGGGTCGGG 59.892 66.667 0.00 0.00 0.00 5.14
2703 2763 2.108362 CCATAACTCGGGTCGGGC 59.892 66.667 0.00 0.00 0.00 6.13
2704 2764 2.108362 CATAACTCGGGTCGGGCC 59.892 66.667 0.00 0.00 0.00 5.80
2705 2765 3.534056 ATAACTCGGGTCGGGCCG 61.534 66.667 22.51 22.51 38.44 6.13
2730 2790 2.571757 GGCCGTGCCTAAAAAGCC 59.428 61.111 7.58 0.00 46.69 4.35
2731 2791 2.571757 GCCGTGCCTAAAAAGCCC 59.428 61.111 0.00 0.00 0.00 5.19
2732 2792 3.001902 GCCGTGCCTAAAAAGCCCC 62.002 63.158 0.00 0.00 0.00 5.80
2733 2793 2.348104 CCGTGCCTAAAAAGCCCCC 61.348 63.158 0.00 0.00 0.00 5.40
2734 2794 1.605165 CGTGCCTAAAAAGCCCCCA 60.605 57.895 0.00 0.00 0.00 4.96
2735 2795 1.595093 CGTGCCTAAAAAGCCCCCAG 61.595 60.000 0.00 0.00 0.00 4.45
2736 2796 1.609210 TGCCTAAAAAGCCCCCAGC 60.609 57.895 0.00 0.00 44.25 4.85
2745 2805 4.056125 GCCCCCAGCAGAAAACGC 62.056 66.667 0.00 0.00 42.97 4.84
2746 2806 2.597217 CCCCCAGCAGAAAACGCA 60.597 61.111 0.00 0.00 0.00 5.24
2747 2807 2.629656 CCCCCAGCAGAAAACGCAG 61.630 63.158 0.00 0.00 0.00 5.18
2748 2808 2.629656 CCCCAGCAGAAAACGCAGG 61.630 63.158 0.00 0.00 35.90 4.85
2749 2809 2.256461 CCAGCAGAAAACGCAGGC 59.744 61.111 0.00 0.00 0.00 4.85
2750 2810 2.256461 CAGCAGAAAACGCAGGCC 59.744 61.111 0.00 0.00 0.00 5.19
2751 2811 2.985847 AGCAGAAAACGCAGGCCC 60.986 61.111 0.00 0.00 0.00 5.80
2752 2812 3.294493 GCAGAAAACGCAGGCCCA 61.294 61.111 0.00 0.00 0.00 5.36
2753 2813 2.855514 GCAGAAAACGCAGGCCCAA 61.856 57.895 0.00 0.00 0.00 4.12
2754 2814 1.007387 CAGAAAACGCAGGCCCAAC 60.007 57.895 0.00 0.00 0.00 3.77
2755 2815 2.200337 AGAAAACGCAGGCCCAACC 61.200 57.895 0.00 0.00 39.61 3.77
2764 2824 3.647771 GGCCCAACCTTCGGACCT 61.648 66.667 0.00 0.00 34.51 3.85
2765 2825 2.295602 GGCCCAACCTTCGGACCTA 61.296 63.158 0.00 0.00 34.51 3.08
2766 2826 1.221021 GCCCAACCTTCGGACCTAG 59.779 63.158 0.00 0.00 0.00 3.02
2767 2827 1.262640 GCCCAACCTTCGGACCTAGA 61.263 60.000 0.00 0.00 0.00 2.43
2768 2828 1.497161 CCCAACCTTCGGACCTAGAT 58.503 55.000 0.00 0.00 0.00 1.98
2769 2829 1.838077 CCCAACCTTCGGACCTAGATT 59.162 52.381 0.00 0.00 0.00 2.40
2770 2830 2.238898 CCCAACCTTCGGACCTAGATTT 59.761 50.000 0.00 0.00 0.00 2.17
2771 2831 3.532542 CCAACCTTCGGACCTAGATTTC 58.467 50.000 0.00 0.00 0.00 2.17
2772 2832 3.055385 CCAACCTTCGGACCTAGATTTCA 60.055 47.826 0.00 0.00 0.00 2.69
2773 2833 4.384208 CCAACCTTCGGACCTAGATTTCAT 60.384 45.833 0.00 0.00 0.00 2.57
2774 2834 4.408182 ACCTTCGGACCTAGATTTCATG 57.592 45.455 0.00 0.00 0.00 3.07
2775 2835 3.134458 CCTTCGGACCTAGATTTCATGC 58.866 50.000 0.00 0.00 0.00 4.06
2776 2836 2.910688 TCGGACCTAGATTTCATGCC 57.089 50.000 0.00 0.00 0.00 4.40
2777 2837 2.398588 TCGGACCTAGATTTCATGCCT 58.601 47.619 0.00 0.00 0.00 4.75
2778 2838 2.103094 TCGGACCTAGATTTCATGCCTG 59.897 50.000 0.00 0.00 0.00 4.85
2779 2839 2.808202 CGGACCTAGATTTCATGCCTGG 60.808 54.545 0.00 0.00 0.00 4.45
2780 2840 2.225467 GACCTAGATTTCATGCCTGGC 58.775 52.381 12.87 12.87 0.00 4.85
2781 2841 1.849039 ACCTAGATTTCATGCCTGGCT 59.151 47.619 21.03 2.27 0.00 4.75
2782 2842 2.158696 ACCTAGATTTCATGCCTGGCTC 60.159 50.000 21.03 7.76 0.00 4.70
2783 2843 2.158711 CCTAGATTTCATGCCTGGCTCA 60.159 50.000 21.03 0.00 0.00 4.26
2784 2844 2.519771 AGATTTCATGCCTGGCTCAA 57.480 45.000 21.03 6.82 0.00 3.02
2785 2845 3.028094 AGATTTCATGCCTGGCTCAAT 57.972 42.857 21.03 11.87 0.00 2.57
2786 2846 2.693591 AGATTTCATGCCTGGCTCAATG 59.306 45.455 21.03 15.07 0.00 2.82
2787 2847 1.187974 TTTCATGCCTGGCTCAATGG 58.812 50.000 21.03 3.09 0.00 3.16
2788 2848 0.332293 TTCATGCCTGGCTCAATGGA 59.668 50.000 21.03 7.32 0.00 3.41
2789 2849 0.332293 TCATGCCTGGCTCAATGGAA 59.668 50.000 21.03 0.00 0.00 3.53
2790 2850 1.187974 CATGCCTGGCTCAATGGAAA 58.812 50.000 21.03 0.00 0.00 3.13
2791 2851 1.551430 CATGCCTGGCTCAATGGAAAA 59.449 47.619 21.03 0.00 0.00 2.29
2792 2852 1.259609 TGCCTGGCTCAATGGAAAAG 58.740 50.000 21.03 0.00 0.00 2.27
2793 2853 0.108472 GCCTGGCTCAATGGAAAAGC 60.108 55.000 12.43 0.00 35.27 3.51
2798 2858 2.591571 GCTCAATGGAAAAGCCCATC 57.408 50.000 0.00 0.00 45.69 3.51
2799 2859 1.202336 GCTCAATGGAAAAGCCCATCG 60.202 52.381 0.00 0.00 45.69 3.84
2800 2860 1.406539 CTCAATGGAAAAGCCCATCGG 59.593 52.381 0.00 0.00 45.69 4.18
2801 2861 0.461135 CAATGGAAAAGCCCATCGGG 59.539 55.000 0.00 0.00 45.69 5.14
2824 2884 3.087906 GGCCGGGCCTCTTTCCTA 61.088 66.667 30.86 0.00 46.69 2.94
2825 2885 2.676265 GGCCGGGCCTCTTTCCTAA 61.676 63.158 30.86 0.00 46.69 2.69
2826 2886 1.301954 GCCGGGCCTCTTTCCTAAA 59.698 57.895 8.12 0.00 0.00 1.85
2827 2887 0.323087 GCCGGGCCTCTTTCCTAAAA 60.323 55.000 8.12 0.00 0.00 1.52
2828 2888 1.460504 CCGGGCCTCTTTCCTAAAAC 58.539 55.000 0.84 0.00 0.00 2.43
2829 2889 1.271707 CCGGGCCTCTTTCCTAAAACA 60.272 52.381 0.84 0.00 0.00 2.83
2830 2890 1.810755 CGGGCCTCTTTCCTAAAACAC 59.189 52.381 0.84 0.00 0.00 3.32
2831 2891 2.812613 CGGGCCTCTTTCCTAAAACACA 60.813 50.000 0.84 0.00 0.00 3.72
2832 2892 3.227614 GGGCCTCTTTCCTAAAACACAA 58.772 45.455 0.84 0.00 0.00 3.33
2833 2893 3.639561 GGGCCTCTTTCCTAAAACACAAA 59.360 43.478 0.84 0.00 0.00 2.83
2834 2894 4.283467 GGGCCTCTTTCCTAAAACACAAAT 59.717 41.667 0.84 0.00 0.00 2.32
2835 2895 5.479027 GGGCCTCTTTCCTAAAACACAAATA 59.521 40.000 0.84 0.00 0.00 1.40
2836 2896 6.154534 GGGCCTCTTTCCTAAAACACAAATAT 59.845 38.462 0.84 0.00 0.00 1.28
2837 2897 7.035612 GGCCTCTTTCCTAAAACACAAATATG 58.964 38.462 0.00 0.00 0.00 1.78
2838 2898 7.309805 GGCCTCTTTCCTAAAACACAAATATGT 60.310 37.037 0.00 0.00 41.61 2.29
2839 2899 7.755373 GCCTCTTTCCTAAAACACAAATATGTC 59.245 37.037 0.00 0.00 37.82 3.06
2840 2900 8.792633 CCTCTTTCCTAAAACACAAATATGTCA 58.207 33.333 0.00 0.00 37.82 3.58
2843 2903 8.810652 TTTCCTAAAACACAAATATGTCAAGC 57.189 30.769 0.00 0.00 37.82 4.01
2844 2904 6.919721 TCCTAAAACACAAATATGTCAAGCC 58.080 36.000 0.00 0.00 37.82 4.35
2845 2905 6.071616 TCCTAAAACACAAATATGTCAAGCCC 60.072 38.462 0.00 0.00 37.82 5.19
2846 2906 5.543507 AAAACACAAATATGTCAAGCCCA 57.456 34.783 0.00 0.00 37.82 5.36
2847 2907 5.543507 AAACACAAATATGTCAAGCCCAA 57.456 34.783 0.00 0.00 37.82 4.12
2848 2908 4.789012 ACACAAATATGTCAAGCCCAAG 57.211 40.909 0.00 0.00 37.82 3.61
2849 2909 3.056607 ACACAAATATGTCAAGCCCAAGC 60.057 43.478 0.00 0.00 37.82 4.01
2850 2910 2.497273 ACAAATATGTCAAGCCCAAGCC 59.503 45.455 0.00 0.00 35.30 4.35
2851 2911 1.780503 AATATGTCAAGCCCAAGCCC 58.219 50.000 0.00 0.00 41.25 5.19
2852 2912 0.630673 ATATGTCAAGCCCAAGCCCA 59.369 50.000 0.00 0.00 41.25 5.36
2853 2913 0.407528 TATGTCAAGCCCAAGCCCAA 59.592 50.000 0.00 0.00 41.25 4.12
2854 2914 1.187567 ATGTCAAGCCCAAGCCCAAC 61.188 55.000 0.00 0.00 41.25 3.77
2855 2915 2.203625 TCAAGCCCAAGCCCAACC 60.204 61.111 0.00 0.00 41.25 3.77
2856 2916 3.313524 CAAGCCCAAGCCCAACCC 61.314 66.667 0.00 0.00 41.25 4.11
2857 2917 4.994756 AAGCCCAAGCCCAACCCG 62.995 66.667 0.00 0.00 41.25 5.28
2867 2927 3.953775 CCAACCCGCCCTGACACT 61.954 66.667 0.00 0.00 0.00 3.55
2868 2928 2.358737 CAACCCGCCCTGACACTC 60.359 66.667 0.00 0.00 0.00 3.51
2869 2929 4.003788 AACCCGCCCTGACACTCG 62.004 66.667 0.00 0.00 0.00 4.18
2870 2930 4.988716 ACCCGCCCTGACACTCGA 62.989 66.667 0.00 0.00 0.00 4.04
2871 2931 4.135153 CCCGCCCTGACACTCGAG 62.135 72.222 11.84 11.84 0.00 4.04
2872 2932 4.803426 CCGCCCTGACACTCGAGC 62.803 72.222 13.61 0.00 0.00 5.03
2873 2933 3.753434 CGCCCTGACACTCGAGCT 61.753 66.667 13.61 0.00 0.00 4.09
2874 2934 2.183046 GCCCTGACACTCGAGCTC 59.817 66.667 13.61 2.73 0.00 4.09
2875 2935 2.640302 GCCCTGACACTCGAGCTCA 61.640 63.158 13.61 12.49 0.00 4.26
2876 2936 1.967535 CCCTGACACTCGAGCTCAA 59.032 57.895 13.61 0.00 0.00 3.02
2877 2937 0.318441 CCCTGACACTCGAGCTCAAA 59.682 55.000 13.61 0.00 0.00 2.69
2878 2938 1.270305 CCCTGACACTCGAGCTCAAAA 60.270 52.381 13.61 0.00 0.00 2.44
2879 2939 2.613977 CCCTGACACTCGAGCTCAAAAT 60.614 50.000 13.61 0.00 0.00 1.82
2880 2940 2.670414 CCTGACACTCGAGCTCAAAATC 59.330 50.000 13.61 4.88 0.00 2.17
2881 2941 3.583806 CTGACACTCGAGCTCAAAATCT 58.416 45.455 13.61 0.00 0.00 2.40
2882 2942 4.380973 CCTGACACTCGAGCTCAAAATCTA 60.381 45.833 13.61 0.00 0.00 1.98
2883 2943 4.738124 TGACACTCGAGCTCAAAATCTAG 58.262 43.478 13.61 1.63 0.00 2.43
2884 2944 4.109050 GACACTCGAGCTCAAAATCTAGG 58.891 47.826 13.61 0.00 0.00 3.02
2885 2945 2.863137 CACTCGAGCTCAAAATCTAGGC 59.137 50.000 13.61 0.00 0.00 3.93
2886 2946 2.159028 ACTCGAGCTCAAAATCTAGGCC 60.159 50.000 13.61 0.00 0.00 5.19
2887 2947 1.139058 TCGAGCTCAAAATCTAGGCCC 59.861 52.381 15.40 0.00 0.00 5.80
2888 2948 1.134401 CGAGCTCAAAATCTAGGCCCA 60.134 52.381 15.40 0.00 0.00 5.36
2889 2949 2.570135 GAGCTCAAAATCTAGGCCCAG 58.430 52.381 9.40 0.00 0.00 4.45
2890 2950 2.171448 GAGCTCAAAATCTAGGCCCAGA 59.829 50.000 9.40 2.45 0.00 3.86
2891 2951 2.092699 AGCTCAAAATCTAGGCCCAGAC 60.093 50.000 1.85 0.00 0.00 3.51
2892 2952 2.924421 CTCAAAATCTAGGCCCAGACC 58.076 52.381 1.85 0.00 0.00 3.85
2893 2953 1.564348 TCAAAATCTAGGCCCAGACCC 59.436 52.381 1.85 0.00 0.00 4.46
2894 2954 1.284785 CAAAATCTAGGCCCAGACCCA 59.715 52.381 1.85 0.00 0.00 4.51
2895 2955 1.216990 AAATCTAGGCCCAGACCCAG 58.783 55.000 1.85 0.00 0.00 4.45
2896 2956 1.348775 AATCTAGGCCCAGACCCAGC 61.349 60.000 1.85 0.00 0.00 4.85
2916 2976 3.712907 GTGGGCAAGACCGGGCTA 61.713 66.667 12.33 0.00 40.62 3.93
2917 2977 3.399181 TGGGCAAGACCGGGCTAG 61.399 66.667 12.33 0.00 40.62 3.42
2918 2978 4.176752 GGGCAAGACCGGGCTAGG 62.177 72.222 12.33 7.57 40.62 3.02
2920 2980 2.669240 GCAAGACCGGGCTAGGTT 59.331 61.111 12.33 0.00 46.09 3.50
2921 2981 1.002502 GCAAGACCGGGCTAGGTTT 60.003 57.895 12.33 0.00 46.09 3.27
2922 2982 1.025113 GCAAGACCGGGCTAGGTTTC 61.025 60.000 12.33 0.00 46.09 2.78
2923 2983 0.392595 CAAGACCGGGCTAGGTTTCC 60.393 60.000 12.33 0.00 46.09 3.13
2924 2984 1.559965 AAGACCGGGCTAGGTTTCCC 61.560 60.000 12.33 0.00 46.09 3.97
2925 2985 2.204029 ACCGGGCTAGGTTTCCCA 60.204 61.111 6.32 0.00 43.00 4.37
2926 2986 1.618447 ACCGGGCTAGGTTTCCCAT 60.618 57.895 6.32 0.00 43.00 4.00
2927 2987 1.152963 CCGGGCTAGGTTTCCCATG 60.153 63.158 0.00 0.00 42.75 3.66
2928 2988 1.152963 CGGGCTAGGTTTCCCATGG 60.153 63.158 4.14 4.14 42.75 3.66
2929 2989 1.921869 CGGGCTAGGTTTCCCATGGT 61.922 60.000 11.73 0.00 42.75 3.55
2930 2990 0.106669 GGGCTAGGTTTCCCATGGTC 60.107 60.000 11.73 0.00 42.18 4.02
2931 2991 0.623723 GGCTAGGTTTCCCATGGTCA 59.376 55.000 11.73 0.00 0.00 4.02
2932 2992 1.408822 GGCTAGGTTTCCCATGGTCAG 60.409 57.143 11.73 0.00 0.00 3.51
2933 2993 1.408822 GCTAGGTTTCCCATGGTCAGG 60.409 57.143 11.73 0.00 0.00 3.86
2934 2994 1.916181 CTAGGTTTCCCATGGTCAGGT 59.084 52.381 11.73 0.00 0.00 4.00
2935 2995 2.053747 AGGTTTCCCATGGTCAGGTA 57.946 50.000 11.73 0.00 0.00 3.08
2936 2996 2.573463 AGGTTTCCCATGGTCAGGTAT 58.427 47.619 11.73 0.00 0.00 2.73
2937 2997 3.743132 AGGTTTCCCATGGTCAGGTATA 58.257 45.455 11.73 0.00 0.00 1.47
2938 2998 3.716872 AGGTTTCCCATGGTCAGGTATAG 59.283 47.826 11.73 0.00 0.00 1.31
2939 2999 3.458487 GGTTTCCCATGGTCAGGTATAGT 59.542 47.826 11.73 0.00 0.00 2.12
2940 3000 4.444449 GGTTTCCCATGGTCAGGTATAGTC 60.444 50.000 11.73 0.00 0.00 2.59
2941 3001 2.594131 TCCCATGGTCAGGTATAGTCG 58.406 52.381 11.73 0.00 0.00 4.18
2942 3002 1.618837 CCCATGGTCAGGTATAGTCGG 59.381 57.143 11.73 0.00 0.00 4.79
2943 3003 1.618837 CCATGGTCAGGTATAGTCGGG 59.381 57.143 2.57 0.00 0.00 5.14
2944 3004 2.594131 CATGGTCAGGTATAGTCGGGA 58.406 52.381 0.00 0.00 0.00 5.14
2945 3005 2.359981 TGGTCAGGTATAGTCGGGAG 57.640 55.000 0.00 0.00 0.00 4.30
2946 3006 1.567649 TGGTCAGGTATAGTCGGGAGT 59.432 52.381 0.00 0.00 0.00 3.85
2947 3007 2.024655 TGGTCAGGTATAGTCGGGAGTT 60.025 50.000 0.00 0.00 0.00 3.01
2948 3008 2.361438 GGTCAGGTATAGTCGGGAGTTG 59.639 54.545 0.00 0.00 0.00 3.16
2949 3009 3.022406 GTCAGGTATAGTCGGGAGTTGT 58.978 50.000 0.00 0.00 0.00 3.32
2950 3010 3.021695 TCAGGTATAGTCGGGAGTTGTG 58.978 50.000 0.00 0.00 0.00 3.33
2951 3011 2.100916 CAGGTATAGTCGGGAGTTGTGG 59.899 54.545 0.00 0.00 0.00 4.17
2952 3012 1.411612 GGTATAGTCGGGAGTTGTGGG 59.588 57.143 0.00 0.00 0.00 4.61
2953 3013 2.381911 GTATAGTCGGGAGTTGTGGGA 58.618 52.381 0.00 0.00 0.00 4.37
2954 3014 1.192428 ATAGTCGGGAGTTGTGGGAC 58.808 55.000 0.00 0.00 0.00 4.46
2955 3015 1.246056 TAGTCGGGAGTTGTGGGACG 61.246 60.000 0.00 0.00 33.04 4.79
2956 3016 3.998672 TCGGGAGTTGTGGGACGC 61.999 66.667 0.00 0.00 40.62 5.19
2969 3029 4.664677 GACGCACCGCTCACAGGT 62.665 66.667 0.00 0.00 43.97 4.00
2970 3030 3.277211 GACGCACCGCTCACAGGTA 62.277 63.158 0.00 0.00 40.59 3.08
2971 3031 2.048597 CGCACCGCTCACAGGTAA 60.049 61.111 0.00 0.00 40.59 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.363473 GCATTAACTCGCTACCAATACAATC 58.637 40.000 0.00 0.00 0.00 2.67
263 273 4.126437 TGCTAATACGCCACGTACTACTA 58.874 43.478 1.43 0.00 45.07 1.82
264 274 2.945008 TGCTAATACGCCACGTACTACT 59.055 45.455 1.43 0.00 45.07 2.57
265 275 3.338818 TGCTAATACGCCACGTACTAC 57.661 47.619 1.43 0.00 45.07 2.73
266 276 3.128415 TGTTGCTAATACGCCACGTACTA 59.872 43.478 1.43 0.00 45.07 1.82
314 324 7.284034 CAGAGGGAGTAGTAATTTTGATGCATT 59.716 37.037 0.00 0.00 0.00 3.56
391 403 7.876068 ACTTTCTCCGTCTCATAATGTAAAACA 59.124 33.333 0.00 0.00 0.00 2.83
394 406 8.746530 AGTACTTTCTCCGTCTCATAATGTAAA 58.253 33.333 0.00 0.00 0.00 2.01
410 422 7.211966 TGACCACTGTAGTAAGTACTTTCTC 57.788 40.000 16.98 10.23 37.73 2.87
411 423 7.778185 ATGACCACTGTAGTAAGTACTTTCT 57.222 36.000 14.49 16.26 37.73 2.52
464 476 5.720520 ACCTAAGAAATACTTCCTCCGTCTT 59.279 40.000 0.00 0.00 39.72 3.01
565 577 0.029035 CGGTGCTACAGCCTACTACG 59.971 60.000 0.00 0.00 41.18 3.51
587 599 4.343526 ACAGTACTGCTCAATCATCTAGGG 59.656 45.833 22.90 0.00 0.00 3.53
768 780 4.321750 CCCATGCGTAGTATAAATCCTCGT 60.322 45.833 0.00 0.00 0.00 4.18
789 801 1.546029 TCGATCGATCATGGATGACCC 59.454 52.381 24.40 0.00 40.03 4.46
790 802 3.516981 ATCGATCGATCATGGATGACC 57.483 47.619 24.60 0.00 40.03 4.02
882 894 1.098050 GAGTGGGTGTGATTGGATGC 58.902 55.000 0.00 0.00 0.00 3.91
884 896 0.625849 GGGAGTGGGTGTGATTGGAT 59.374 55.000 0.00 0.00 0.00 3.41
920 932 0.485099 AGGGAGGAGTAGATGGCGAT 59.515 55.000 0.00 0.00 0.00 4.58
938 950 2.202492 CACGAAGAGCGGGTCGAG 60.202 66.667 11.97 1.76 46.49 4.04
972 984 4.456253 CCAAGAAGCAGCGCGCAG 62.456 66.667 35.10 27.72 46.13 5.18
1215 1248 2.080286 CGATTTCCTCGTGTTCCTGT 57.920 50.000 0.00 0.00 42.56 4.00
1232 1265 0.317854 CACGCTATCGGAAGCATCGA 60.318 55.000 9.97 0.00 42.91 3.59
1441 1474 2.668632 GCTGACATTGGTCCCCGA 59.331 61.111 0.00 0.00 43.65 5.14
1865 1898 2.430244 GCGCCTCGTCGAGTTCAA 60.430 61.111 20.37 0.00 0.00 2.69
1957 1990 7.612677 TGGAAAGAGTACTAAAGGAAGATGAC 58.387 38.462 0.00 0.00 0.00 3.06
2521 2581 2.442999 CGCTGCTGCTCACTTCTCG 61.443 63.158 14.03 0.00 36.97 4.04
2522 2582 1.080230 TCGCTGCTGCTCACTTCTC 60.080 57.895 14.03 0.00 36.97 2.87
2523 2583 1.373999 GTCGCTGCTGCTCACTTCT 60.374 57.895 14.03 0.00 36.97 2.85
2524 2584 2.724708 CGTCGCTGCTGCTCACTTC 61.725 63.158 14.03 0.00 36.97 3.01
2525 2585 2.736236 CGTCGCTGCTGCTCACTT 60.736 61.111 14.03 0.00 36.97 3.16
2526 2586 4.731612 CCGTCGCTGCTGCTCACT 62.732 66.667 14.03 0.00 36.97 3.41
2527 2587 3.626680 TACCGTCGCTGCTGCTCAC 62.627 63.158 14.03 8.93 36.97 3.51
2528 2588 2.428960 TTTACCGTCGCTGCTGCTCA 62.429 55.000 14.03 0.00 36.97 4.26
2529 2589 1.289109 TTTTACCGTCGCTGCTGCTC 61.289 55.000 14.03 5.88 36.97 4.26
2530 2590 0.673644 ATTTTACCGTCGCTGCTGCT 60.674 50.000 14.03 0.00 36.97 4.24
2531 2591 0.168128 AATTTTACCGTCGCTGCTGC 59.832 50.000 5.34 5.34 0.00 5.25
2532 2592 2.241722 CAAATTTTACCGTCGCTGCTG 58.758 47.619 0.00 0.00 0.00 4.41
2533 2593 1.401018 GCAAATTTTACCGTCGCTGCT 60.401 47.619 0.00 0.00 0.00 4.24
2534 2594 0.981956 GCAAATTTTACCGTCGCTGC 59.018 50.000 0.00 0.00 0.00 5.25
2535 2595 1.246970 CGCAAATTTTACCGTCGCTG 58.753 50.000 0.00 0.00 0.00 5.18
2536 2596 0.167251 CCGCAAATTTTACCGTCGCT 59.833 50.000 0.00 0.00 0.00 4.93
2537 2597 1.400246 GCCGCAAATTTTACCGTCGC 61.400 55.000 0.00 0.00 0.00 5.19
2538 2598 0.167251 AGCCGCAAATTTTACCGTCG 59.833 50.000 0.00 0.00 0.00 5.12
2539 2599 1.613270 CAGCCGCAAATTTTACCGTC 58.387 50.000 0.00 0.00 0.00 4.79
2540 2600 0.388006 GCAGCCGCAAATTTTACCGT 60.388 50.000 0.00 0.00 38.36 4.83
2541 2601 2.358791 GCAGCCGCAAATTTTACCG 58.641 52.632 0.00 0.00 38.36 4.02
2554 2614 2.578163 TAGACTGATGCCGTGCAGCC 62.578 60.000 10.82 3.72 44.94 4.85
2555 2615 1.150567 CTAGACTGATGCCGTGCAGC 61.151 60.000 7.11 7.11 45.81 5.25
2556 2616 1.150567 GCTAGACTGATGCCGTGCAG 61.151 60.000 0.00 0.00 43.65 4.41
2557 2617 1.153568 GCTAGACTGATGCCGTGCA 60.154 57.895 0.00 1.01 44.86 4.57
2558 2618 0.385751 TAGCTAGACTGATGCCGTGC 59.614 55.000 0.00 0.00 0.00 5.34
2559 2619 4.480541 CTTATAGCTAGACTGATGCCGTG 58.519 47.826 0.00 0.00 0.00 4.94
2560 2620 3.057174 GCTTATAGCTAGACTGATGCCGT 60.057 47.826 0.00 0.00 38.45 5.68
2561 2621 3.057245 TGCTTATAGCTAGACTGATGCCG 60.057 47.826 0.00 0.00 42.97 5.69
2562 2622 4.527509 TGCTTATAGCTAGACTGATGCC 57.472 45.455 0.00 0.00 42.97 4.40
2563 2623 5.407995 CCTTTGCTTATAGCTAGACTGATGC 59.592 44.000 0.00 0.00 42.97 3.91
2564 2624 5.407995 GCCTTTGCTTATAGCTAGACTGATG 59.592 44.000 0.00 0.00 42.97 3.07
2565 2625 5.546526 GCCTTTGCTTATAGCTAGACTGAT 58.453 41.667 0.00 0.00 42.97 2.90
2566 2626 4.499865 CGCCTTTGCTTATAGCTAGACTGA 60.500 45.833 0.00 0.00 42.97 3.41
2567 2627 3.738282 CGCCTTTGCTTATAGCTAGACTG 59.262 47.826 0.00 0.00 42.97 3.51
2568 2628 3.637229 TCGCCTTTGCTTATAGCTAGACT 59.363 43.478 0.00 0.00 42.97 3.24
2569 2629 3.978687 TCGCCTTTGCTTATAGCTAGAC 58.021 45.455 0.00 0.00 42.97 2.59
2570 2630 4.873746 ATCGCCTTTGCTTATAGCTAGA 57.126 40.909 0.00 0.00 42.97 2.43
2571 2631 4.752101 ACAATCGCCTTTGCTTATAGCTAG 59.248 41.667 0.00 0.00 42.97 3.42
2572 2632 4.703897 ACAATCGCCTTTGCTTATAGCTA 58.296 39.130 0.00 0.00 42.97 3.32
2573 2633 3.545703 ACAATCGCCTTTGCTTATAGCT 58.454 40.909 0.00 0.00 42.97 3.32
2574 2634 3.971032 ACAATCGCCTTTGCTTATAGC 57.029 42.857 0.00 0.00 42.82 2.97
2575 2635 4.506654 ACGTACAATCGCCTTTGCTTATAG 59.493 41.667 0.00 0.00 34.43 1.31
2576 2636 4.435425 ACGTACAATCGCCTTTGCTTATA 58.565 39.130 0.00 0.00 34.43 0.98
2577 2637 3.267483 ACGTACAATCGCCTTTGCTTAT 58.733 40.909 0.00 0.00 34.43 1.73
2578 2638 2.690786 ACGTACAATCGCCTTTGCTTA 58.309 42.857 0.00 0.00 34.43 3.09
2579 2639 1.519408 ACGTACAATCGCCTTTGCTT 58.481 45.000 0.00 0.00 34.43 3.91
2580 2640 1.997606 GTACGTACAATCGCCTTTGCT 59.002 47.619 20.67 0.00 34.43 3.91
2581 2641 1.061566 GGTACGTACAATCGCCTTTGC 59.938 52.381 26.02 1.51 0.00 3.68
2593 2653 3.851875 GCTGTTGCTTAGCGGTACGTAC 61.852 54.545 17.56 17.56 45.80 3.67
2594 2654 1.733389 GCTGTTGCTTAGCGGTACGTA 60.733 52.381 0.00 0.00 45.80 3.57
2595 2655 1.012486 GCTGTTGCTTAGCGGTACGT 61.012 55.000 0.00 0.00 45.80 3.57
2596 2656 1.708027 GCTGTTGCTTAGCGGTACG 59.292 57.895 0.00 0.00 46.48 3.67
2597 2657 0.721718 CTGCTGTTGCTTAGCGGTAC 59.278 55.000 0.00 0.00 44.01 3.34
2598 2658 1.019278 GCTGCTGTTGCTTAGCGGTA 61.019 55.000 14.61 0.00 46.70 4.02
2599 2659 2.328099 GCTGCTGTTGCTTAGCGGT 61.328 57.895 14.61 0.00 46.70 5.68
2601 2661 1.134075 CTGCTGCTGTTGCTTAGCG 59.866 57.895 0.00 0.00 44.01 4.26
2602 2662 1.154073 GCTGCTGCTGTTGCTTAGC 60.154 57.895 8.53 0.00 41.49 3.09
2603 2663 0.594602 TTGCTGCTGCTGTTGCTTAG 59.405 50.000 17.00 0.00 40.48 2.18
2604 2664 0.311790 GTTGCTGCTGCTGTTGCTTA 59.688 50.000 17.00 0.00 40.48 3.09
2605 2665 1.066918 GTTGCTGCTGCTGTTGCTT 59.933 52.632 17.00 0.00 40.48 3.91
2606 2666 1.669049 TTGTTGCTGCTGCTGTTGCT 61.669 50.000 17.00 0.00 40.48 3.91
2607 2667 1.227031 TTGTTGCTGCTGCTGTTGC 60.227 52.632 17.00 4.76 40.48 4.17
2608 2668 0.179132 TGTTGTTGCTGCTGCTGTTG 60.179 50.000 17.00 0.00 40.48 3.33
2609 2669 0.531657 TTGTTGTTGCTGCTGCTGTT 59.468 45.000 17.00 0.00 40.48 3.16
2610 2670 0.179129 GTTGTTGTTGCTGCTGCTGT 60.179 50.000 17.00 0.00 40.48 4.40
2611 2671 0.179132 TGTTGTTGTTGCTGCTGCTG 60.179 50.000 17.00 0.77 40.48 4.41
2612 2672 0.531657 TTGTTGTTGTTGCTGCTGCT 59.468 45.000 17.00 0.00 40.48 4.24
2613 2673 0.925466 CTTGTTGTTGTTGCTGCTGC 59.075 50.000 8.89 8.89 40.20 5.25
2614 2674 2.565210 TCTTGTTGTTGTTGCTGCTG 57.435 45.000 0.00 0.00 0.00 4.41
2615 2675 2.736400 GCTTCTTGTTGTTGTTGCTGCT 60.736 45.455 0.00 0.00 0.00 4.24
2616 2676 1.589779 GCTTCTTGTTGTTGTTGCTGC 59.410 47.619 0.00 0.00 0.00 5.25
2617 2677 2.855963 CTGCTTCTTGTTGTTGTTGCTG 59.144 45.455 0.00 0.00 0.00 4.41
2618 2678 2.493278 ACTGCTTCTTGTTGTTGTTGCT 59.507 40.909 0.00 0.00 0.00 3.91
2619 2679 2.879826 ACTGCTTCTTGTTGTTGTTGC 58.120 42.857 0.00 0.00 0.00 4.17
2620 2680 4.828291 CAACTGCTTCTTGTTGTTGTTG 57.172 40.909 0.00 0.00 38.81 3.33
2626 2686 2.031560 TGCGTACAACTGCTTCTTGTTG 59.968 45.455 0.00 0.00 46.19 3.33
2627 2687 2.285083 TGCGTACAACTGCTTCTTGTT 58.715 42.857 0.00 0.00 33.79 2.83
2628 2688 1.948104 TGCGTACAACTGCTTCTTGT 58.052 45.000 0.00 0.00 35.92 3.16
2629 2689 2.543848 TCTTGCGTACAACTGCTTCTTG 59.456 45.455 0.00 0.00 0.00 3.02
2630 2690 2.833794 TCTTGCGTACAACTGCTTCTT 58.166 42.857 0.00 0.00 0.00 2.52
2631 2691 2.526304 TCTTGCGTACAACTGCTTCT 57.474 45.000 0.00 0.00 0.00 2.85
2632 2692 3.433615 AGATTCTTGCGTACAACTGCTTC 59.566 43.478 0.00 0.00 0.00 3.86
2633 2693 3.403038 AGATTCTTGCGTACAACTGCTT 58.597 40.909 0.00 0.00 0.00 3.91
2634 2694 3.045601 AGATTCTTGCGTACAACTGCT 57.954 42.857 0.00 0.00 0.00 4.24
2635 2695 3.241678 CGTAGATTCTTGCGTACAACTGC 60.242 47.826 0.00 0.00 0.00 4.40
2636 2696 3.303495 CCGTAGATTCTTGCGTACAACTG 59.697 47.826 0.00 0.00 0.00 3.16
2637 2697 3.192001 TCCGTAGATTCTTGCGTACAACT 59.808 43.478 0.00 0.00 0.00 3.16
2638 2698 3.504863 TCCGTAGATTCTTGCGTACAAC 58.495 45.455 0.00 0.00 0.00 3.32
2639 2699 3.853831 TCCGTAGATTCTTGCGTACAA 57.146 42.857 0.00 0.00 0.00 2.41
2640 2700 3.853831 TTCCGTAGATTCTTGCGTACA 57.146 42.857 0.00 0.00 0.00 2.90
2641 2701 4.802039 TCAATTCCGTAGATTCTTGCGTAC 59.198 41.667 0.00 0.00 0.00 3.67
2642 2702 5.001237 TCAATTCCGTAGATTCTTGCGTA 57.999 39.130 0.00 0.00 0.00 4.42
2643 2703 3.857052 TCAATTCCGTAGATTCTTGCGT 58.143 40.909 0.00 0.00 0.00 5.24
2644 2704 4.330074 ACTTCAATTCCGTAGATTCTTGCG 59.670 41.667 0.00 0.00 0.00 4.85
2645 2705 5.447818 CCACTTCAATTCCGTAGATTCTTGC 60.448 44.000 0.00 0.00 0.00 4.01
2646 2706 5.643777 ACCACTTCAATTCCGTAGATTCTTG 59.356 40.000 0.00 0.00 0.00 3.02
2647 2707 5.805728 ACCACTTCAATTCCGTAGATTCTT 58.194 37.500 0.00 0.00 0.00 2.52
2648 2708 5.420409 GACCACTTCAATTCCGTAGATTCT 58.580 41.667 0.00 0.00 0.00 2.40
2649 2709 4.267928 CGACCACTTCAATTCCGTAGATTC 59.732 45.833 0.00 0.00 0.00 2.52
2650 2710 4.181578 CGACCACTTCAATTCCGTAGATT 58.818 43.478 0.00 0.00 0.00 2.40
2651 2711 3.430374 CCGACCACTTCAATTCCGTAGAT 60.430 47.826 0.00 0.00 0.00 1.98
2652 2712 2.094390 CCGACCACTTCAATTCCGTAGA 60.094 50.000 0.00 0.00 0.00 2.59
2653 2713 2.268298 CCGACCACTTCAATTCCGTAG 58.732 52.381 0.00 0.00 0.00 3.51
2654 2714 1.066716 CCCGACCACTTCAATTCCGTA 60.067 52.381 0.00 0.00 0.00 4.02
2655 2715 0.321298 CCCGACCACTTCAATTCCGT 60.321 55.000 0.00 0.00 0.00 4.69
2656 2716 0.036765 TCCCGACCACTTCAATTCCG 60.037 55.000 0.00 0.00 0.00 4.30
2657 2717 1.003233 ACTCCCGACCACTTCAATTCC 59.997 52.381 0.00 0.00 0.00 3.01
2658 2718 2.474410 ACTCCCGACCACTTCAATTC 57.526 50.000 0.00 0.00 0.00 2.17
2659 2719 4.141779 GGTATACTCCCGACCACTTCAATT 60.142 45.833 2.25 0.00 33.16 2.32
2660 2720 3.387050 GGTATACTCCCGACCACTTCAAT 59.613 47.826 2.25 0.00 33.16 2.57
2661 2721 2.762327 GGTATACTCCCGACCACTTCAA 59.238 50.000 2.25 0.00 33.16 2.69
2662 2722 2.024655 AGGTATACTCCCGACCACTTCA 60.025 50.000 2.25 0.00 35.56 3.02
2663 2723 2.361438 CAGGTATACTCCCGACCACTTC 59.639 54.545 2.25 0.00 35.56 3.01
2664 2724 2.385803 CAGGTATACTCCCGACCACTT 58.614 52.381 2.25 0.00 35.56 3.16
2665 2725 1.411216 CCAGGTATACTCCCGACCACT 60.411 57.143 2.25 0.00 35.56 4.00
2666 2726 1.038280 CCAGGTATACTCCCGACCAC 58.962 60.000 2.25 0.00 35.56 4.16
2667 2727 0.757935 GCCAGGTATACTCCCGACCA 60.758 60.000 2.25 0.00 35.56 4.02
2668 2728 1.470165 GGCCAGGTATACTCCCGACC 61.470 65.000 0.00 0.00 0.00 4.79
2669 2729 0.757935 TGGCCAGGTATACTCCCGAC 60.758 60.000 0.00 0.00 0.00 4.79
2670 2730 0.190069 ATGGCCAGGTATACTCCCGA 59.810 55.000 13.05 0.00 0.00 5.14
2671 2731 1.933021 TATGGCCAGGTATACTCCCG 58.067 55.000 13.05 0.00 0.00 5.14
2672 2732 3.248888 AGTTATGGCCAGGTATACTCCC 58.751 50.000 13.05 0.00 0.00 4.30
2673 2733 3.056749 CGAGTTATGGCCAGGTATACTCC 60.057 52.174 13.05 3.90 0.00 3.85
2674 2734 3.056749 CCGAGTTATGGCCAGGTATACTC 60.057 52.174 13.05 16.59 0.00 2.59
2675 2735 2.897969 CCGAGTTATGGCCAGGTATACT 59.102 50.000 13.05 9.58 0.00 2.12
2676 2736 2.028385 CCCGAGTTATGGCCAGGTATAC 60.028 54.545 13.05 4.47 0.00 1.47
2677 2737 2.253610 CCCGAGTTATGGCCAGGTATA 58.746 52.381 13.05 0.00 0.00 1.47
2678 2738 1.056660 CCCGAGTTATGGCCAGGTAT 58.943 55.000 13.05 0.00 0.00 2.73
2679 2739 0.325860 ACCCGAGTTATGGCCAGGTA 60.326 55.000 13.05 0.00 0.00 3.08
2680 2740 1.615424 ACCCGAGTTATGGCCAGGT 60.615 57.895 13.05 8.36 0.00 4.00
2681 2741 1.146263 GACCCGAGTTATGGCCAGG 59.854 63.158 13.05 7.59 0.00 4.45
2682 2742 1.227263 CGACCCGAGTTATGGCCAG 60.227 63.158 13.05 0.00 0.00 4.85
2683 2743 2.727392 CCGACCCGAGTTATGGCCA 61.727 63.158 8.56 8.56 0.00 5.36
2684 2744 2.108362 CCGACCCGAGTTATGGCC 59.892 66.667 0.00 0.00 0.00 5.36
2685 2745 2.108362 CCCGACCCGAGTTATGGC 59.892 66.667 0.00 0.00 0.00 4.40
2686 2746 2.108362 GCCCGACCCGAGTTATGG 59.892 66.667 0.00 0.00 0.00 2.74
2687 2747 2.108362 GGCCCGACCCGAGTTATG 59.892 66.667 0.00 0.00 0.00 1.90
2714 2774 2.571757 GGGCTTTTTAGGCACGGC 59.428 61.111 0.00 0.00 35.93 5.68
2715 2775 2.348104 GGGGGCTTTTTAGGCACGG 61.348 63.158 0.00 0.00 38.81 4.94
2716 2776 1.595093 CTGGGGGCTTTTTAGGCACG 61.595 60.000 0.00 0.00 38.81 5.34
2717 2777 1.888436 GCTGGGGGCTTTTTAGGCAC 61.888 60.000 0.00 0.00 38.06 5.01
2718 2778 1.609210 GCTGGGGGCTTTTTAGGCA 60.609 57.895 0.00 0.00 38.06 4.75
2719 2779 1.607801 CTGCTGGGGGCTTTTTAGGC 61.608 60.000 0.00 0.00 42.39 3.93
2720 2780 0.039618 TCTGCTGGGGGCTTTTTAGG 59.960 55.000 0.00 0.00 42.39 2.69
2721 2781 1.923356 TTCTGCTGGGGGCTTTTTAG 58.077 50.000 0.00 0.00 42.39 1.85
2722 2782 2.367241 GTTTTCTGCTGGGGGCTTTTTA 59.633 45.455 0.00 0.00 42.39 1.52
2723 2783 1.140852 GTTTTCTGCTGGGGGCTTTTT 59.859 47.619 0.00 0.00 42.39 1.94
2724 2784 0.758734 GTTTTCTGCTGGGGGCTTTT 59.241 50.000 0.00 0.00 42.39 2.27
2725 2785 1.463553 CGTTTTCTGCTGGGGGCTTT 61.464 55.000 0.00 0.00 42.39 3.51
2726 2786 1.903404 CGTTTTCTGCTGGGGGCTT 60.903 57.895 0.00 0.00 42.39 4.35
2727 2787 2.282462 CGTTTTCTGCTGGGGGCT 60.282 61.111 0.00 0.00 42.39 5.19
2728 2788 4.056125 GCGTTTTCTGCTGGGGGC 62.056 66.667 0.00 0.00 42.22 5.80
2729 2789 2.597217 TGCGTTTTCTGCTGGGGG 60.597 61.111 0.00 0.00 0.00 5.40
2730 2790 2.629656 CCTGCGTTTTCTGCTGGGG 61.630 63.158 3.27 0.00 44.85 4.96
2731 2791 2.956987 CCTGCGTTTTCTGCTGGG 59.043 61.111 3.27 0.00 44.85 4.45
2733 2793 2.256461 GGCCTGCGTTTTCTGCTG 59.744 61.111 0.00 0.00 0.00 4.41
2734 2794 2.985847 GGGCCTGCGTTTTCTGCT 60.986 61.111 0.84 0.00 0.00 4.24
2735 2795 2.855514 TTGGGCCTGCGTTTTCTGC 61.856 57.895 4.53 0.00 0.00 4.26
2736 2796 1.007387 GTTGGGCCTGCGTTTTCTG 60.007 57.895 4.53 0.00 0.00 3.02
2737 2797 2.200337 GGTTGGGCCTGCGTTTTCT 61.200 57.895 4.53 0.00 0.00 2.52
2738 2798 2.338620 GGTTGGGCCTGCGTTTTC 59.661 61.111 4.53 0.00 0.00 2.29
2755 2815 3.134458 GGCATGAAATCTAGGTCCGAAG 58.866 50.000 0.00 0.00 0.00 3.79
2756 2816 2.771943 AGGCATGAAATCTAGGTCCGAA 59.228 45.455 0.00 0.00 0.00 4.30
2757 2817 2.103094 CAGGCATGAAATCTAGGTCCGA 59.897 50.000 0.00 0.00 0.00 4.55
2758 2818 2.487934 CAGGCATGAAATCTAGGTCCG 58.512 52.381 0.00 0.00 0.00 4.79
2759 2819 2.856222 CCAGGCATGAAATCTAGGTCC 58.144 52.381 0.00 0.00 0.00 4.46
2760 2820 2.158696 AGCCAGGCATGAAATCTAGGTC 60.159 50.000 15.80 0.00 0.00 3.85
2761 2821 1.849039 AGCCAGGCATGAAATCTAGGT 59.151 47.619 15.80 0.00 0.00 3.08
2762 2822 2.158711 TGAGCCAGGCATGAAATCTAGG 60.159 50.000 15.80 0.00 0.00 3.02
2763 2823 3.204306 TGAGCCAGGCATGAAATCTAG 57.796 47.619 15.80 0.00 0.00 2.43
2764 2824 3.650281 TTGAGCCAGGCATGAAATCTA 57.350 42.857 15.80 0.00 0.00 1.98
2765 2825 2.519771 TTGAGCCAGGCATGAAATCT 57.480 45.000 15.80 0.00 0.00 2.40
2766 2826 2.223971 CCATTGAGCCAGGCATGAAATC 60.224 50.000 15.80 1.09 0.00 2.17
2767 2827 1.760613 CCATTGAGCCAGGCATGAAAT 59.239 47.619 15.80 4.67 0.00 2.17
2768 2828 1.187974 CCATTGAGCCAGGCATGAAA 58.812 50.000 15.80 2.19 0.00 2.69
2769 2829 0.332293 TCCATTGAGCCAGGCATGAA 59.668 50.000 15.80 2.99 0.00 2.57
2770 2830 0.332293 TTCCATTGAGCCAGGCATGA 59.668 50.000 15.80 0.00 0.00 3.07
2771 2831 1.187974 TTTCCATTGAGCCAGGCATG 58.812 50.000 15.80 8.79 0.00 4.06
2772 2832 1.829222 CTTTTCCATTGAGCCAGGCAT 59.171 47.619 15.80 0.00 0.00 4.40
2773 2833 1.259609 CTTTTCCATTGAGCCAGGCA 58.740 50.000 15.80 0.00 0.00 4.75
2774 2834 0.108472 GCTTTTCCATTGAGCCAGGC 60.108 55.000 1.84 1.84 0.00 4.85
2779 2839 1.202336 CGATGGGCTTTTCCATTGAGC 60.202 52.381 5.41 0.00 46.74 4.26
2780 2840 1.406539 CCGATGGGCTTTTCCATTGAG 59.593 52.381 11.56 1.78 46.74 3.02
2781 2841 1.473258 CCGATGGGCTTTTCCATTGA 58.527 50.000 11.56 0.00 46.74 2.57
2782 2842 0.461135 CCCGATGGGCTTTTCCATTG 59.539 55.000 4.54 4.54 46.67 2.82
2783 2843 2.900547 CCCGATGGGCTTTTCCATT 58.099 52.632 0.00 0.00 46.67 3.16
2808 2868 0.323087 TTTTAGGAAAGAGGCCCGGC 60.323 55.000 0.00 0.00 0.00 6.13
2809 2869 1.271707 TGTTTTAGGAAAGAGGCCCGG 60.272 52.381 0.00 0.00 0.00 5.73
2810 2870 1.810755 GTGTTTTAGGAAAGAGGCCCG 59.189 52.381 0.00 0.00 0.00 6.13
2811 2871 2.871453 TGTGTTTTAGGAAAGAGGCCC 58.129 47.619 0.00 0.00 0.00 5.80
2812 2872 4.929819 TTTGTGTTTTAGGAAAGAGGCC 57.070 40.909 0.00 0.00 0.00 5.19
2813 2873 7.602753 ACATATTTGTGTTTTAGGAAAGAGGC 58.397 34.615 0.00 0.00 33.85 4.70
2814 2874 8.792633 TGACATATTTGTGTTTTAGGAAAGAGG 58.207 33.333 0.00 0.00 35.79 3.69
2817 2877 8.915654 GCTTGACATATTTGTGTTTTAGGAAAG 58.084 33.333 0.00 0.00 35.79 2.62
2818 2878 7.870445 GGCTTGACATATTTGTGTTTTAGGAAA 59.130 33.333 0.00 0.00 35.79 3.13
2819 2879 7.375053 GGCTTGACATATTTGTGTTTTAGGAA 58.625 34.615 0.00 0.00 35.79 3.36
2820 2880 6.071616 GGGCTTGACATATTTGTGTTTTAGGA 60.072 38.462 0.00 0.00 35.79 2.94
2821 2881 6.099341 GGGCTTGACATATTTGTGTTTTAGG 58.901 40.000 0.00 0.00 35.79 2.69
2822 2882 6.686630 TGGGCTTGACATATTTGTGTTTTAG 58.313 36.000 0.00 0.00 35.79 1.85
2823 2883 6.656632 TGGGCTTGACATATTTGTGTTTTA 57.343 33.333 0.00 0.00 35.79 1.52
2824 2884 5.543507 TGGGCTTGACATATTTGTGTTTT 57.456 34.783 0.00 0.00 35.79 2.43
2825 2885 5.540911 CTTGGGCTTGACATATTTGTGTTT 58.459 37.500 0.00 0.00 35.79 2.83
2826 2886 4.561326 GCTTGGGCTTGACATATTTGTGTT 60.561 41.667 0.00 0.00 33.90 3.32
2827 2887 3.056607 GCTTGGGCTTGACATATTTGTGT 60.057 43.478 0.00 0.00 33.90 3.72
2828 2888 3.514645 GCTTGGGCTTGACATATTTGTG 58.485 45.455 0.00 0.00 33.90 3.33
2829 2889 2.497273 GGCTTGGGCTTGACATATTTGT 59.503 45.455 0.00 0.00 37.43 2.83
2830 2890 2.159057 GGGCTTGGGCTTGACATATTTG 60.159 50.000 0.00 0.00 38.73 2.32
2831 2891 2.110578 GGGCTTGGGCTTGACATATTT 58.889 47.619 0.00 0.00 38.73 1.40
2832 2892 1.006998 TGGGCTTGGGCTTGACATATT 59.993 47.619 0.00 0.00 38.73 1.28
2833 2893 0.630673 TGGGCTTGGGCTTGACATAT 59.369 50.000 0.00 0.00 38.73 1.78
2834 2894 0.407528 TTGGGCTTGGGCTTGACATA 59.592 50.000 0.00 0.00 38.73 2.29
2835 2895 1.155859 TTGGGCTTGGGCTTGACAT 59.844 52.632 0.00 0.00 38.73 3.06
2836 2896 1.832167 GTTGGGCTTGGGCTTGACA 60.832 57.895 0.00 0.00 38.73 3.58
2837 2897 2.574018 GGTTGGGCTTGGGCTTGAC 61.574 63.158 0.00 0.00 38.73 3.18
2838 2898 2.203625 GGTTGGGCTTGGGCTTGA 60.204 61.111 0.00 0.00 38.73 3.02
2839 2899 3.313524 GGGTTGGGCTTGGGCTTG 61.314 66.667 0.00 0.00 38.73 4.01
2840 2900 4.994756 CGGGTTGGGCTTGGGCTT 62.995 66.667 0.00 0.00 38.73 4.35
2850 2910 3.901797 GAGTGTCAGGGCGGGTTGG 62.902 68.421 0.00 0.00 0.00 3.77
2851 2911 2.358737 GAGTGTCAGGGCGGGTTG 60.359 66.667 0.00 0.00 0.00 3.77
2852 2912 4.003788 CGAGTGTCAGGGCGGGTT 62.004 66.667 0.00 0.00 0.00 4.11
2853 2913 4.988716 TCGAGTGTCAGGGCGGGT 62.989 66.667 0.00 0.00 0.00 5.28
2854 2914 4.135153 CTCGAGTGTCAGGGCGGG 62.135 72.222 3.62 0.00 0.00 6.13
2855 2915 4.803426 GCTCGAGTGTCAGGGCGG 62.803 72.222 15.13 0.00 0.00 6.13
2856 2916 3.691744 GAGCTCGAGTGTCAGGGCG 62.692 68.421 15.13 0.00 0.00 6.13
2857 2917 2.159819 TTGAGCTCGAGTGTCAGGGC 62.160 60.000 15.13 0.00 0.00 5.19
2858 2918 0.318441 TTTGAGCTCGAGTGTCAGGG 59.682 55.000 15.13 0.00 0.00 4.45
2859 2919 2.154854 TTTTGAGCTCGAGTGTCAGG 57.845 50.000 15.13 0.00 0.00 3.86
2860 2920 3.583806 AGATTTTGAGCTCGAGTGTCAG 58.416 45.455 15.13 0.00 0.00 3.51
2861 2921 3.667497 AGATTTTGAGCTCGAGTGTCA 57.333 42.857 15.13 14.28 0.00 3.58
2862 2922 4.109050 CCTAGATTTTGAGCTCGAGTGTC 58.891 47.826 15.13 11.77 0.00 3.67
2863 2923 3.677424 GCCTAGATTTTGAGCTCGAGTGT 60.677 47.826 15.13 1.13 0.00 3.55
2864 2924 2.863137 GCCTAGATTTTGAGCTCGAGTG 59.137 50.000 15.13 0.00 0.00 3.51
2865 2925 2.159028 GGCCTAGATTTTGAGCTCGAGT 60.159 50.000 15.13 0.23 0.00 4.18
2866 2926 2.478831 GGCCTAGATTTTGAGCTCGAG 58.521 52.381 8.45 8.45 0.00 4.04
2867 2927 1.139058 GGGCCTAGATTTTGAGCTCGA 59.861 52.381 9.64 3.88 0.00 4.04
2868 2928 1.134401 TGGGCCTAGATTTTGAGCTCG 60.134 52.381 9.64 0.00 0.00 5.03
2869 2929 2.171448 TCTGGGCCTAGATTTTGAGCTC 59.829 50.000 15.99 6.82 0.00 4.09
2870 2930 2.092699 GTCTGGGCCTAGATTTTGAGCT 60.093 50.000 23.01 0.00 0.00 4.09
2871 2931 2.293170 GTCTGGGCCTAGATTTTGAGC 58.707 52.381 23.01 3.35 0.00 4.26
2872 2932 2.422093 GGGTCTGGGCCTAGATTTTGAG 60.422 54.545 23.01 0.00 0.00 3.02
2873 2933 1.564348 GGGTCTGGGCCTAGATTTTGA 59.436 52.381 23.01 0.00 0.00 2.69
2874 2934 1.284785 TGGGTCTGGGCCTAGATTTTG 59.715 52.381 23.01 0.00 0.00 2.44
2875 2935 1.566231 CTGGGTCTGGGCCTAGATTTT 59.434 52.381 23.01 0.00 39.18 1.82
2876 2936 1.216990 CTGGGTCTGGGCCTAGATTT 58.783 55.000 23.01 0.00 39.18 2.17
2877 2937 1.348775 GCTGGGTCTGGGCCTAGATT 61.349 60.000 23.01 0.00 39.18 2.40
2878 2938 1.768077 GCTGGGTCTGGGCCTAGAT 60.768 63.158 23.01 0.00 39.18 1.98
2879 2939 2.365635 GCTGGGTCTGGGCCTAGA 60.366 66.667 15.99 15.99 39.18 2.43
2880 2940 3.483869 GGCTGGGTCTGGGCCTAG 61.484 72.222 10.47 10.47 42.31 3.02
2899 2959 3.682292 CTAGCCCGGTCTTGCCCAC 62.682 68.421 0.00 0.00 0.00 4.61
2900 2960 3.399181 CTAGCCCGGTCTTGCCCA 61.399 66.667 0.00 0.00 0.00 5.36
2901 2961 4.176752 CCTAGCCCGGTCTTGCCC 62.177 72.222 0.00 0.00 0.00 5.36
2902 2962 2.479820 AAACCTAGCCCGGTCTTGCC 62.480 60.000 0.00 0.00 35.89 4.52
2903 2963 1.002502 AAACCTAGCCCGGTCTTGC 60.003 57.895 0.00 0.00 35.89 4.01
2904 2964 0.392595 GGAAACCTAGCCCGGTCTTG 60.393 60.000 0.00 0.00 35.89 3.02
2905 2965 1.988817 GGAAACCTAGCCCGGTCTT 59.011 57.895 0.00 0.00 35.89 3.01
2906 2966 3.723245 GGAAACCTAGCCCGGTCT 58.277 61.111 0.00 0.00 35.89 3.85
2918 2978 4.704965 GACTATACCTGACCATGGGAAAC 58.295 47.826 18.09 5.17 0.00 2.78
2919 2979 3.386726 CGACTATACCTGACCATGGGAAA 59.613 47.826 18.09 0.00 0.00 3.13
2920 2980 2.963101 CGACTATACCTGACCATGGGAA 59.037 50.000 18.09 2.17 0.00 3.97
2921 2981 2.594131 CGACTATACCTGACCATGGGA 58.406 52.381 18.09 0.48 0.00 4.37
2922 2982 1.618837 CCGACTATACCTGACCATGGG 59.381 57.143 18.09 0.00 0.00 4.00
2923 2983 1.618837 CCCGACTATACCTGACCATGG 59.381 57.143 11.19 11.19 0.00 3.66
2924 2984 2.558795 CTCCCGACTATACCTGACCATG 59.441 54.545 0.00 0.00 0.00 3.66
2925 2985 2.177233 ACTCCCGACTATACCTGACCAT 59.823 50.000 0.00 0.00 0.00 3.55
2926 2986 1.567649 ACTCCCGACTATACCTGACCA 59.432 52.381 0.00 0.00 0.00 4.02
2927 2987 2.361438 CAACTCCCGACTATACCTGACC 59.639 54.545 0.00 0.00 0.00 4.02
2928 2988 3.022406 ACAACTCCCGACTATACCTGAC 58.978 50.000 0.00 0.00 0.00 3.51
2929 2989 3.021695 CACAACTCCCGACTATACCTGA 58.978 50.000 0.00 0.00 0.00 3.86
2930 2990 2.100916 CCACAACTCCCGACTATACCTG 59.899 54.545 0.00 0.00 0.00 4.00
2931 2991 2.385803 CCACAACTCCCGACTATACCT 58.614 52.381 0.00 0.00 0.00 3.08
2932 2992 1.411612 CCCACAACTCCCGACTATACC 59.588 57.143 0.00 0.00 0.00 2.73
2933 2993 2.100418 GTCCCACAACTCCCGACTATAC 59.900 54.545 0.00 0.00 0.00 1.47
2934 2994 2.381911 GTCCCACAACTCCCGACTATA 58.618 52.381 0.00 0.00 0.00 1.31
2935 2995 1.192428 GTCCCACAACTCCCGACTAT 58.808 55.000 0.00 0.00 0.00 2.12
2936 2996 1.246056 CGTCCCACAACTCCCGACTA 61.246 60.000 0.00 0.00 0.00 2.59
2937 2997 2.571216 CGTCCCACAACTCCCGACT 61.571 63.158 0.00 0.00 0.00 4.18
2938 2998 2.048503 CGTCCCACAACTCCCGAC 60.049 66.667 0.00 0.00 0.00 4.79
2939 2999 3.998672 GCGTCCCACAACTCCCGA 61.999 66.667 0.00 0.00 0.00 5.14
2940 3000 4.308458 TGCGTCCCACAACTCCCG 62.308 66.667 0.00 0.00 0.00 5.14
2941 3001 2.668550 GTGCGTCCCACAACTCCC 60.669 66.667 0.00 0.00 44.06 4.30
2942 3002 2.668550 GGTGCGTCCCACAACTCC 60.669 66.667 0.00 0.00 46.50 3.85
2943 3003 3.041940 CGGTGCGTCCCACAACTC 61.042 66.667 0.00 0.00 46.50 3.01
2946 3006 4.980805 GAGCGGTGCGTCCCACAA 62.981 66.667 0.00 0.00 46.50 3.33
2952 3012 2.758770 TTACCTGTGAGCGGTGCGTC 62.759 60.000 0.00 0.00 35.98 5.19
2953 3013 2.863346 TTACCTGTGAGCGGTGCGT 61.863 57.895 0.00 0.00 35.98 5.24
2954 3014 2.048597 TTACCTGTGAGCGGTGCG 60.049 61.111 0.00 0.00 35.98 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.