Multiple sequence alignment - TraesCS2A01G340000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G340000 chr2A 100.000 6140 0 0 1 6140 574970043 574976182 0.000000e+00 11339.0
1 TraesCS2A01G340000 chr2D 96.861 3695 74 14 1972 5644 406951024 406954698 0.000000e+00 6143.0
2 TraesCS2A01G340000 chr2D 93.885 1292 48 17 372 1639 406949744 406951028 0.000000e+00 1919.0
3 TraesCS2A01G340000 chr2D 86.517 534 26 19 5640 6137 406954787 406955310 4.190000e-151 545.0
4 TraesCS2A01G340000 chr2B 91.261 3639 181 55 2591 6140 482732410 482736000 0.000000e+00 4831.0
5 TraesCS2A01G340000 chr2B 87.973 1638 104 38 60 1639 482730077 482731679 0.000000e+00 1847.0
6 TraesCS2A01G340000 chr2B 95.330 621 21 5 1972 2587 482731675 482732292 0.000000e+00 979.0
7 TraesCS2A01G340000 chr2B 99.138 348 2 1 1631 1978 576841720 576841374 5.230000e-175 625.0
8 TraesCS2A01G340000 chr2B 99.130 345 3 0 1634 1978 98389877 98389533 6.760000e-174 621.0
9 TraesCS2A01G340000 chrUn 99.143 350 2 1 1630 1979 168683397 168683745 4.040000e-176 628.0
10 TraesCS2A01G340000 chrUn 98.857 350 3 1 1630 1979 374420308 374419960 1.880000e-174 623.0
11 TraesCS2A01G340000 chrUn 98.286 350 5 1 1630 1979 168630841 168631189 4.070000e-171 612.0
12 TraesCS2A01G340000 chrUn 98.286 350 5 1 1630 1979 205369758 205370106 4.070000e-171 612.0
13 TraesCS2A01G340000 chr1A 99.135 347 2 1 1635 1981 153581958 153582303 1.880000e-174 623.0
14 TraesCS2A01G340000 chr6A 99.415 342 2 0 1634 1975 472007851 472008192 6.760000e-174 621.0
15 TraesCS2A01G340000 chr6A 87.055 309 40 0 1052 1360 346571553 346571861 3.520000e-92 350.0
16 TraesCS2A01G340000 chr4B 98.567 349 2 3 1627 1973 128540865 128541212 1.130000e-171 614.0
17 TraesCS2A01G340000 chr4B 90.411 73 4 3 327 396 145521360 145521288 6.550000e-15 93.5
18 TraesCS2A01G340000 chr6D 87.055 309 40 0 1052 1360 249995556 249995248 3.520000e-92 350.0
19 TraesCS2A01G340000 chr6B 87.619 210 26 0 1052 1261 338015350 338015141 1.710000e-60 244.0
20 TraesCS2A01G340000 chr6B 100.000 28 0 0 5769 5796 65091741 65091714 1.100000e-02 52.8
21 TraesCS2A01G340000 chr4D 88.000 75 7 2 324 396 101501386 101501312 3.050000e-13 87.9
22 TraesCS2A01G340000 chr7D 86.076 79 6 2 323 396 39134530 39134608 5.100000e-11 80.5
23 TraesCS2A01G340000 chr7D 85.714 77 8 2 323 396 627215537 627215461 1.830000e-10 78.7
24 TraesCS2A01G340000 chr7D 83.117 77 10 2 323 396 54836543 54836467 3.970000e-07 67.6
25 TraesCS2A01G340000 chr7D 100.000 28 0 0 5769 5796 203706247 203706220 1.100000e-02 52.8
26 TraesCS2A01G340000 chr1D 85.185 81 7 5 320 396 101285144 101285223 1.830000e-10 78.7
27 TraesCS2A01G340000 chr7B 83.544 79 8 2 320 396 450642200 450642125 1.100000e-07 69.4
28 TraesCS2A01G340000 chr3B 83.117 77 9 3 323 396 829220727 829220652 3.970000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G340000 chr2A 574970043 574976182 6139 False 11339.000000 11339 100.000000 1 6140 1 chr2A.!!$F1 6139
1 TraesCS2A01G340000 chr2D 406949744 406955310 5566 False 2869.000000 6143 92.421000 372 6137 3 chr2D.!!$F1 5765
2 TraesCS2A01G340000 chr2B 482730077 482736000 5923 False 2552.333333 4831 91.521333 60 6140 3 chr2B.!!$F1 6080

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.760572 GGGGTATTTAGCGGCCTGTA 59.239 55.000 0.00 0.0 0.00 2.74 F
575 614 1.133792 CGCCAAGATAAATGGGGGAGT 60.134 52.381 1.99 0.0 44.67 3.85 F
1720 1797 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.0 0.00 3.51 F
1722 1799 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.0 0.00 2.59 F
1848 1925 0.704076 TGGATTGGAGGGTTTGGAGG 59.296 55.000 0.00 0.0 0.00 4.30 F
1849 1926 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.0 0.00 3.71 F
1920 1997 1.065854 GCATGGGTGAGACTAGCAAGT 60.066 52.381 0.00 0.0 39.21 3.16 F
3903 4100 0.331278 TGCCACCCATCGAATTTCCT 59.669 50.000 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1778 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66 R
1891 1968 0.256752 CTCACCCATGCTTGGATCCA 59.743 55.000 19.85 11.44 46.92 3.41 R
3412 3609 1.959085 CCAACCAAGCGCATCACTT 59.041 52.632 11.47 0.00 0.00 3.16 R
3705 3902 2.254651 GCAGCTTGCAGCACAGAC 59.745 61.111 0.00 0.00 45.56 3.51 R
3891 4088 5.643664 TGCAAATCTTGAGGAAATTCGATG 58.356 37.500 0.00 0.00 0.00 3.84 R
3903 4100 4.012374 GGACTTCCATCTGCAAATCTTGA 58.988 43.478 0.00 0.00 35.64 3.02 R
3948 4145 1.321474 CAGTTGTGAGCACATTGGGT 58.679 50.000 3.90 0.00 41.52 4.51 R
5468 5722 0.179034 ATAGCAGCAGCAGGTAAGGC 60.179 55.000 3.17 0.00 45.49 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.730296 TGTATATTTTGTTTGGTGGGTGG 57.270 39.130 0.00 0.00 0.00 4.61
25 26 4.528596 TGTATATTTTGTTTGGTGGGTGGG 59.471 41.667 0.00 0.00 0.00 4.61
26 27 1.886422 ATTTTGTTTGGTGGGTGGGT 58.114 45.000 0.00 0.00 0.00 4.51
27 28 0.905357 TTTTGTTTGGTGGGTGGGTG 59.095 50.000 0.00 0.00 0.00 4.61
28 29 0.978146 TTTGTTTGGTGGGTGGGTGG 60.978 55.000 0.00 0.00 0.00 4.61
29 30 1.875422 TTGTTTGGTGGGTGGGTGGA 61.875 55.000 0.00 0.00 0.00 4.02
30 31 1.530655 GTTTGGTGGGTGGGTGGAG 60.531 63.158 0.00 0.00 0.00 3.86
31 32 2.773527 TTTGGTGGGTGGGTGGAGG 61.774 63.158 0.00 0.00 0.00 4.30
49 50 2.161581 GGGGGAGGGGGTATTTAGC 58.838 63.158 0.00 0.00 0.00 3.09
50 51 1.759236 GGGGAGGGGGTATTTAGCG 59.241 63.158 0.00 0.00 0.00 4.26
51 52 1.759236 GGGAGGGGGTATTTAGCGG 59.241 63.158 0.00 0.00 0.00 5.52
52 53 1.072678 GGAGGGGGTATTTAGCGGC 59.927 63.158 0.00 0.00 0.00 6.53
53 54 1.072678 GAGGGGGTATTTAGCGGCC 59.927 63.158 0.00 0.00 0.00 6.13
54 55 1.385489 AGGGGGTATTTAGCGGCCT 60.385 57.895 0.00 0.00 0.00 5.19
55 56 1.228154 GGGGGTATTTAGCGGCCTG 60.228 63.158 0.00 0.00 0.00 4.85
56 57 1.530283 GGGGTATTTAGCGGCCTGT 59.470 57.895 0.00 0.00 0.00 4.00
57 58 0.760572 GGGGTATTTAGCGGCCTGTA 59.239 55.000 0.00 0.00 0.00 2.74
58 59 1.141455 GGGGTATTTAGCGGCCTGTAA 59.859 52.381 0.00 0.00 0.00 2.41
76 77 8.343366 GGCCTGTAAGAAACATAGCTTATTTAC 58.657 37.037 0.00 0.00 37.50 2.01
77 78 9.110502 GCCTGTAAGAAACATAGCTTATTTACT 57.889 33.333 0.00 0.00 37.50 2.24
79 80 9.922305 CTGTAAGAAACATAGCTTATTTACTGC 57.078 33.333 0.00 0.00 37.50 4.40
80 81 9.443323 TGTAAGAAACATAGCTTATTTACTGCA 57.557 29.630 0.00 0.00 31.43 4.41
98 99 5.825507 ACTGCAAGATTTGAGAGAAACAAC 58.174 37.500 0.00 0.00 37.43 3.32
100 101 6.127647 ACTGCAAGATTTGAGAGAAACAACAA 60.128 34.615 0.00 0.00 37.43 2.83
103 104 7.276218 TGCAAGATTTGAGAGAAACAACAAAAG 59.724 33.333 0.00 0.00 36.19 2.27
105 106 9.017669 CAAGATTTGAGAGAAACAACAAAAGAG 57.982 33.333 0.00 0.00 36.19 2.85
107 108 8.401709 AGATTTGAGAGAAACAACAAAAGAGAC 58.598 33.333 0.00 0.00 36.19 3.36
110 111 6.842163 TGAGAGAAACAACAAAAGAGACAAC 58.158 36.000 0.00 0.00 0.00 3.32
116 117 9.268268 AGAAACAACAAAAGAGACAACGATATA 57.732 29.630 0.00 0.00 0.00 0.86
117 118 9.314501 GAAACAACAAAAGAGACAACGATATAC 57.685 33.333 0.00 0.00 0.00 1.47
124 125 5.455056 AGAGACAACGATATACCATGGTC 57.545 43.478 23.76 5.87 0.00 4.02
141 142 5.407084 CCATGGTCGTTTAATTTGGGAAAAC 59.593 40.000 2.57 0.00 0.00 2.43
142 143 5.593679 TGGTCGTTTAATTTGGGAAAACA 57.406 34.783 2.63 0.00 33.67 2.83
143 144 6.163135 TGGTCGTTTAATTTGGGAAAACAT 57.837 33.333 2.63 0.00 33.67 2.71
145 146 7.897864 TGGTCGTTTAATTTGGGAAAACATAT 58.102 30.769 2.63 0.00 33.67 1.78
156 157 6.610741 TGGGAAAACATATTTTGTGTTTGC 57.389 33.333 5.16 3.50 46.01 3.68
167 168 3.357166 TTGTGTTTGCGTGGGTAATTC 57.643 42.857 0.00 0.00 0.00 2.17
169 170 2.550606 TGTGTTTGCGTGGGTAATTCTC 59.449 45.455 0.00 0.00 0.00 2.87
171 172 3.998341 GTGTTTGCGTGGGTAATTCTCTA 59.002 43.478 0.00 0.00 0.00 2.43
174 175 5.116882 GTTTGCGTGGGTAATTCTCTATCT 58.883 41.667 0.00 0.00 0.00 1.98
181 182 5.836358 GTGGGTAATTCTCTATCTCTCTGGT 59.164 44.000 0.00 0.00 0.00 4.00
193 194 7.175797 TCTATCTCTCTGGTCAGTCTTGTTAA 58.824 38.462 0.00 0.00 0.00 2.01
195 196 4.023107 TCTCTCTGGTCAGTCTTGTTAACG 60.023 45.833 0.26 0.00 0.00 3.18
221 222 8.830201 AATGAAATTTCAAATCGATTTCACCA 57.170 26.923 23.91 11.39 46.45 4.17
292 302 8.478066 AGCTAAGAACAAAAACTTCCAAAATCT 58.522 29.630 0.00 0.00 0.00 2.40
309 329 7.183112 TCCAAAATCTTAGGGTCACCAAGTATA 59.817 37.037 0.00 0.00 40.13 1.47
310 330 7.998964 CCAAAATCTTAGGGTCACCAAGTATAT 59.001 37.037 0.00 0.00 40.13 0.86
321 341 7.180408 GGGTCACCAAGTATATCATGGTACTAT 59.820 40.741 0.00 0.00 44.92 2.12
336 356 4.848660 TGGTACTATCTACTCCCTCCGTAT 59.151 45.833 0.00 0.00 0.00 3.06
346 366 8.945195 TCTACTCCCTCCGTATCAAAATATAA 57.055 34.615 0.00 0.00 0.00 0.98
347 367 9.021807 TCTACTCCCTCCGTATCAAAATATAAG 57.978 37.037 0.00 0.00 0.00 1.73
348 368 7.850935 ACTCCCTCCGTATCAAAATATAAGA 57.149 36.000 0.00 0.00 0.00 2.10
349 369 8.437274 ACTCCCTCCGTATCAAAATATAAGAT 57.563 34.615 0.00 0.00 0.00 2.40
350 370 9.543231 ACTCCCTCCGTATCAAAATATAAGATA 57.457 33.333 0.00 0.00 0.00 1.98
475 505 1.926561 TCTGGAATCGTTCATGCTCG 58.073 50.000 3.60 3.60 0.00 5.03
556 595 1.407258 GAGAGGAGAATGGTCAGGTCG 59.593 57.143 0.00 0.00 0.00 4.79
570 609 1.949525 CAGGTCGCCAAGATAAATGGG 59.050 52.381 0.00 0.00 38.44 4.00
575 614 1.133792 CGCCAAGATAAATGGGGGAGT 60.134 52.381 1.99 0.00 44.67 3.85
631 670 1.330155 TATCCTCAACCTCCCCCTCT 58.670 55.000 0.00 0.00 0.00 3.69
730 776 3.323979 AGTTACGCAGAAAAGAGGAGGAA 59.676 43.478 0.00 0.00 0.00 3.36
860 926 2.731374 CGGGATTCTCGAGAGGCC 59.269 66.667 21.19 21.19 0.00 5.19
920 986 1.646189 GTGTTCTTGATCCGAGGAGC 58.354 55.000 0.00 0.00 0.00 4.70
951 1018 4.227527 GGGGTTTCTTTCTTGGATAGGAGA 59.772 45.833 0.00 0.00 0.00 3.71
952 1019 5.432645 GGGTTTCTTTCTTGGATAGGAGAG 58.567 45.833 0.00 0.00 0.00 3.20
954 1021 5.189934 GGTTTCTTTCTTGGATAGGAGAGGA 59.810 44.000 0.00 0.00 0.00 3.71
955 1022 6.345298 GTTTCTTTCTTGGATAGGAGAGGAG 58.655 44.000 0.00 0.00 0.00 3.69
956 1023 4.551671 TCTTTCTTGGATAGGAGAGGAGG 58.448 47.826 0.00 0.00 0.00 4.30
957 1024 2.390225 TCTTGGATAGGAGAGGAGGC 57.610 55.000 0.00 0.00 0.00 4.70
1368 1435 2.469826 GGTTTGCTTCCTTTTCGGTTG 58.530 47.619 0.00 0.00 0.00 3.77
1380 1453 3.817148 TTTCGGTTGAAAATACGCCTC 57.183 42.857 0.00 0.00 41.02 4.70
1406 1479 3.500368 TTTGCTCGTGCGCGTGTTC 62.500 57.895 20.50 6.00 43.34 3.18
1429 1502 9.651718 GTTCTCTAAACAACACAAGAAATACTG 57.348 33.333 0.00 0.00 0.00 2.74
1503 1576 7.908827 TCTGTGGTTTATTAACGCTATTTCA 57.091 32.000 0.00 0.00 35.00 2.69
1611 1686 3.055819 TGCTCAGGTTGAACCAGATCTAC 60.056 47.826 17.83 4.95 41.95 2.59
1621 1698 8.785946 GGTTGAACCAGATCTACTATACTACTC 58.214 40.741 9.98 0.00 38.42 2.59
1622 1699 9.339850 GTTGAACCAGATCTACTATACTACTCA 57.660 37.037 0.00 0.00 0.00 3.41
1623 1700 8.905660 TGAACCAGATCTACTATACTACTCAC 57.094 38.462 0.00 0.00 0.00 3.51
1624 1701 8.715842 TGAACCAGATCTACTATACTACTCACT 58.284 37.037 0.00 0.00 0.00 3.41
1641 1718 8.821147 CTACTCACTACAGTAGTACTATGAGG 57.179 42.308 23.29 14.61 40.72 3.86
1642 1719 6.593807 ACTCACTACAGTAGTACTATGAGGG 58.406 44.000 23.29 14.79 37.23 4.30
1643 1720 6.158344 ACTCACTACAGTAGTACTATGAGGGT 59.842 42.308 23.29 9.68 37.23 4.34
1644 1721 6.354938 TCACTACAGTAGTACTATGAGGGTG 58.645 44.000 13.12 12.32 37.23 4.61
1645 1722 5.008811 CACTACAGTAGTACTATGAGGGTGC 59.991 48.000 13.12 0.00 37.23 5.01
1646 1723 4.252570 ACAGTAGTACTATGAGGGTGCT 57.747 45.455 5.75 0.00 34.33 4.40
1647 1724 4.611367 ACAGTAGTACTATGAGGGTGCTT 58.389 43.478 5.75 0.00 32.38 3.91
1648 1725 4.402793 ACAGTAGTACTATGAGGGTGCTTG 59.597 45.833 5.75 0.00 32.38 4.01
1649 1726 3.961408 AGTAGTACTATGAGGGTGCTTGG 59.039 47.826 5.75 0.00 32.38 3.61
1650 1727 3.116096 AGTACTATGAGGGTGCTTGGA 57.884 47.619 0.00 0.00 0.00 3.53
1651 1728 3.658725 AGTACTATGAGGGTGCTTGGAT 58.341 45.455 0.00 0.00 0.00 3.41
1652 1729 4.816126 AGTACTATGAGGGTGCTTGGATA 58.184 43.478 0.00 0.00 0.00 2.59
1653 1730 4.589374 AGTACTATGAGGGTGCTTGGATAC 59.411 45.833 0.00 0.00 0.00 2.24
1673 1750 8.664211 GGATACAAGGGACTATTTTTAGTCTG 57.336 38.462 11.69 6.32 44.35 3.51
1674 1751 8.483758 GGATACAAGGGACTATTTTTAGTCTGA 58.516 37.037 11.69 0.00 44.35 3.27
1675 1752 9.315525 GATACAAGGGACTATTTTTAGTCTGAC 57.684 37.037 11.69 0.00 44.35 3.51
1676 1753 7.317722 ACAAGGGACTATTTTTAGTCTGACT 57.682 36.000 15.57 15.57 44.35 3.41
1677 1754 8.431910 ACAAGGGACTATTTTTAGTCTGACTA 57.568 34.615 13.34 13.34 44.35 2.59
1678 1755 8.877195 ACAAGGGACTATTTTTAGTCTGACTAA 58.123 33.333 22.80 22.80 44.35 2.24
1679 1756 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
1698 1775 9.654663 TGACTAAAAATAGTCTCTTTTAGAGGC 57.345 33.333 22.30 14.20 46.94 4.70
1707 1784 6.971527 GTCTCTTTTAGAGGCTAAAGTTCC 57.028 41.667 7.84 0.00 43.38 3.62
1708 1785 6.465084 GTCTCTTTTAGAGGCTAAAGTTCCA 58.535 40.000 7.84 0.00 43.38 3.53
1709 1786 6.935208 GTCTCTTTTAGAGGCTAAAGTTCCAA 59.065 38.462 7.84 0.00 43.38 3.53
1710 1787 7.118535 GTCTCTTTTAGAGGCTAAAGTTCCAAG 59.881 40.741 7.84 0.00 43.38 3.61
1711 1788 5.705905 TCTTTTAGAGGCTAAAGTTCCAAGC 59.294 40.000 7.84 0.00 33.97 4.01
1712 1789 4.634012 TTAGAGGCTAAAGTTCCAAGCA 57.366 40.909 0.00 0.00 38.01 3.91
1713 1790 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
1714 1791 1.813178 GAGGCTAAAGTTCCAAGCACC 59.187 52.381 0.00 0.00 38.01 5.01
1715 1792 0.888619 GGCTAAAGTTCCAAGCACCC 59.111 55.000 7.02 0.00 38.01 4.61
1716 1793 0.888619 GCTAAAGTTCCAAGCACCCC 59.111 55.000 0.00 0.00 36.26 4.95
1717 1794 1.547901 GCTAAAGTTCCAAGCACCCCT 60.548 52.381 0.00 0.00 36.26 4.79
1718 1795 2.162681 CTAAAGTTCCAAGCACCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
1719 1796 0.555769 AAAGTTCCAAGCACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
1720 1797 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
1721 1798 1.062488 AGTTCCAAGCACCCCTGACT 61.062 55.000 0.00 0.00 0.00 3.41
1722 1799 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.00 0.00 2.59
1723 1800 1.073284 GTTCCAAGCACCCCTGACTAA 59.927 52.381 0.00 0.00 0.00 2.24
1724 1801 1.440618 TCCAAGCACCCCTGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
1725 1802 1.351017 TCCAAGCACCCCTGACTAAAG 59.649 52.381 0.00 0.00 0.00 1.85
1726 1803 1.351017 CCAAGCACCCCTGACTAAAGA 59.649 52.381 0.00 0.00 0.00 2.52
1727 1804 2.616510 CCAAGCACCCCTGACTAAAGAG 60.617 54.545 0.00 0.00 0.00 2.85
1728 1805 2.303022 CAAGCACCCCTGACTAAAGAGA 59.697 50.000 0.00 0.00 0.00 3.10
1729 1806 2.183679 AGCACCCCTGACTAAAGAGAG 58.816 52.381 0.00 0.00 0.00 3.20
1730 1807 1.208293 GCACCCCTGACTAAAGAGAGG 59.792 57.143 0.00 0.00 0.00 3.69
1731 1808 1.208293 CACCCCTGACTAAAGAGAGGC 59.792 57.143 0.00 0.00 0.00 4.70
1732 1809 1.079658 ACCCCTGACTAAAGAGAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
1733 1810 2.315155 ACCCCTGACTAAAGAGAGGCTA 59.685 50.000 0.00 0.00 0.00 3.93
1734 1811 2.962421 CCCCTGACTAAAGAGAGGCTAG 59.038 54.545 0.00 0.00 0.00 3.42
1735 1812 2.962421 CCCTGACTAAAGAGAGGCTAGG 59.038 54.545 0.00 0.00 0.00 3.02
1736 1813 3.373220 CCCTGACTAAAGAGAGGCTAGGA 60.373 52.174 0.00 0.00 29.08 2.94
1737 1814 3.634910 CCTGACTAAAGAGAGGCTAGGAC 59.365 52.174 0.00 0.00 29.08 3.85
1738 1815 4.532834 CTGACTAAAGAGAGGCTAGGACT 58.467 47.826 0.00 0.00 0.00 3.85
1739 1816 5.398126 CCTGACTAAAGAGAGGCTAGGACTA 60.398 48.000 0.00 0.00 29.08 2.59
1740 1817 5.686753 TGACTAAAGAGAGGCTAGGACTAG 58.313 45.833 1.98 1.98 36.29 2.57
1741 1818 5.192121 TGACTAAAGAGAGGCTAGGACTAGT 59.808 44.000 0.00 0.00 35.65 2.57
1742 1819 5.687780 ACTAAAGAGAGGCTAGGACTAGTC 58.312 45.833 14.87 14.87 38.03 2.59
1748 1825 3.306472 AGGCTAGGACTAGTCTTGAGG 57.694 52.381 21.88 10.56 45.03 3.86
1749 1826 1.684450 GGCTAGGACTAGTCTTGAGGC 59.316 57.143 21.88 21.38 35.06 4.70
1750 1827 2.661718 GCTAGGACTAGTCTTGAGGCT 58.338 52.381 21.88 11.79 35.65 4.58
1751 1828 3.435313 GGCTAGGACTAGTCTTGAGGCTA 60.435 52.174 24.87 16.06 35.06 3.93
1752 1829 4.208746 GCTAGGACTAGTCTTGAGGCTAA 58.791 47.826 21.88 0.00 35.65 3.09
1753 1830 4.645588 GCTAGGACTAGTCTTGAGGCTAAA 59.354 45.833 21.88 0.00 35.65 1.85
1754 1831 5.127356 GCTAGGACTAGTCTTGAGGCTAAAA 59.873 44.000 21.88 0.00 35.65 1.52
1755 1832 6.183360 GCTAGGACTAGTCTTGAGGCTAAAAT 60.183 42.308 21.88 0.00 35.65 1.82
1756 1833 6.228616 AGGACTAGTCTTGAGGCTAAAATC 57.771 41.667 21.88 0.73 0.00 2.17
1757 1834 5.961421 AGGACTAGTCTTGAGGCTAAAATCT 59.039 40.000 21.88 3.06 0.00 2.40
1758 1835 6.442244 AGGACTAGTCTTGAGGCTAAAATCTT 59.558 38.462 21.88 0.00 0.00 2.40
1759 1836 7.037945 AGGACTAGTCTTGAGGCTAAAATCTTT 60.038 37.037 21.88 0.00 0.00 2.52
1760 1837 7.608376 GGACTAGTCTTGAGGCTAAAATCTTTT 59.392 37.037 21.88 0.00 0.00 2.27
1761 1838 9.654663 GACTAGTCTTGAGGCTAAAATCTTTTA 57.345 33.333 15.91 0.00 0.00 1.52
1778 1855 9.588096 AAATCTTTTAGTCATGGAAAACCTACT 57.412 29.630 0.00 0.00 0.00 2.57
1787 1864 9.975218 AGTCATGGAAAACCTACTAAAATATGT 57.025 29.630 0.00 0.00 0.00 2.29
1805 1882 9.600432 AAAATATGTATTAGCTCTCTCTCTCCT 57.400 33.333 0.00 0.00 0.00 3.69
1806 1883 8.807948 AATATGTATTAGCTCTCTCTCTCCTC 57.192 38.462 0.00 0.00 0.00 3.71
1807 1884 5.638530 TGTATTAGCTCTCTCTCTCCTCA 57.361 43.478 0.00 0.00 0.00 3.86
1808 1885 6.199557 TGTATTAGCTCTCTCTCTCCTCAT 57.800 41.667 0.00 0.00 0.00 2.90
1809 1886 6.609876 TGTATTAGCTCTCTCTCTCCTCATT 58.390 40.000 0.00 0.00 0.00 2.57
1810 1887 7.066142 TGTATTAGCTCTCTCTCTCCTCATTT 58.934 38.462 0.00 0.00 0.00 2.32
1811 1888 8.221251 TGTATTAGCTCTCTCTCTCCTCATTTA 58.779 37.037 0.00 0.00 0.00 1.40
1812 1889 9.073475 GTATTAGCTCTCTCTCTCCTCATTTAA 57.927 37.037 0.00 0.00 0.00 1.52
1813 1890 8.725606 ATTAGCTCTCTCTCTCCTCATTTAAT 57.274 34.615 0.00 0.00 0.00 1.40
1814 1891 8.546083 TTAGCTCTCTCTCTCCTCATTTAATT 57.454 34.615 0.00 0.00 0.00 1.40
1815 1892 7.054491 AGCTCTCTCTCTCCTCATTTAATTC 57.946 40.000 0.00 0.00 0.00 2.17
1816 1893 6.041979 AGCTCTCTCTCTCCTCATTTAATTCC 59.958 42.308 0.00 0.00 0.00 3.01
1817 1894 6.041979 GCTCTCTCTCTCCTCATTTAATTCCT 59.958 42.308 0.00 0.00 0.00 3.36
1818 1895 7.595819 TCTCTCTCTCCTCATTTAATTCCTC 57.404 40.000 0.00 0.00 0.00 3.71
1819 1896 7.361438 TCTCTCTCTCCTCATTTAATTCCTCT 58.639 38.462 0.00 0.00 0.00 3.69
1820 1897 7.505585 TCTCTCTCTCCTCATTTAATTCCTCTC 59.494 40.741 0.00 0.00 0.00 3.20
1821 1898 6.553100 TCTCTCTCCTCATTTAATTCCTCTCC 59.447 42.308 0.00 0.00 0.00 3.71
1822 1899 6.448202 TCTCTCCTCATTTAATTCCTCTCCT 58.552 40.000 0.00 0.00 0.00 3.69
1823 1900 6.905776 TCTCTCCTCATTTAATTCCTCTCCTT 59.094 38.462 0.00 0.00 0.00 3.36
1824 1901 8.068110 TCTCTCCTCATTTAATTCCTCTCCTTA 58.932 37.037 0.00 0.00 0.00 2.69
1825 1902 8.256356 TCTCCTCATTTAATTCCTCTCCTTAG 57.744 38.462 0.00 0.00 0.00 2.18
1826 1903 7.846823 TCTCCTCATTTAATTCCTCTCCTTAGT 59.153 37.037 0.00 0.00 0.00 2.24
1827 1904 8.393959 TCCTCATTTAATTCCTCTCCTTAGTT 57.606 34.615 0.00 0.00 0.00 2.24
1828 1905 8.487028 TCCTCATTTAATTCCTCTCCTTAGTTC 58.513 37.037 0.00 0.00 0.00 3.01
1829 1906 8.490311 CCTCATTTAATTCCTCTCCTTAGTTCT 58.510 37.037 0.00 0.00 0.00 3.01
1830 1907 9.323985 CTCATTTAATTCCTCTCCTTAGTTCTG 57.676 37.037 0.00 0.00 0.00 3.02
1831 1908 8.267894 TCATTTAATTCCTCTCCTTAGTTCTGG 58.732 37.037 0.00 0.00 0.00 3.86
1832 1909 7.808279 TTTAATTCCTCTCCTTAGTTCTGGA 57.192 36.000 0.00 0.00 0.00 3.86
1833 1910 7.996758 TTAATTCCTCTCCTTAGTTCTGGAT 57.003 36.000 0.00 0.00 0.00 3.41
1834 1911 6.899892 AATTCCTCTCCTTAGTTCTGGATT 57.100 37.500 0.00 0.00 0.00 3.01
1835 1912 5.683876 TTCCTCTCCTTAGTTCTGGATTG 57.316 43.478 0.00 0.00 0.00 2.67
1836 1913 4.033709 TCCTCTCCTTAGTTCTGGATTGG 58.966 47.826 0.00 0.00 0.00 3.16
1837 1914 4.033709 CCTCTCCTTAGTTCTGGATTGGA 58.966 47.826 0.00 0.00 31.05 3.53
1838 1915 4.100808 CCTCTCCTTAGTTCTGGATTGGAG 59.899 50.000 0.00 0.00 40.47 3.86
1839 1916 4.033709 TCTCCTTAGTTCTGGATTGGAGG 58.966 47.826 0.00 0.00 39.80 4.30
1840 1917 3.115390 TCCTTAGTTCTGGATTGGAGGG 58.885 50.000 0.00 0.00 0.00 4.30
1841 1918 2.846827 CCTTAGTTCTGGATTGGAGGGT 59.153 50.000 0.00 0.00 0.00 4.34
1842 1919 3.267031 CCTTAGTTCTGGATTGGAGGGTT 59.733 47.826 0.00 0.00 0.00 4.11
1843 1920 4.263949 CCTTAGTTCTGGATTGGAGGGTTT 60.264 45.833 0.00 0.00 0.00 3.27
1844 1921 3.160679 AGTTCTGGATTGGAGGGTTTG 57.839 47.619 0.00 0.00 0.00 2.93
1845 1922 2.171003 GTTCTGGATTGGAGGGTTTGG 58.829 52.381 0.00 0.00 0.00 3.28
1846 1923 1.753903 TCTGGATTGGAGGGTTTGGA 58.246 50.000 0.00 0.00 0.00 3.53
1847 1924 1.635487 TCTGGATTGGAGGGTTTGGAG 59.365 52.381 0.00 0.00 0.00 3.86
1848 1925 0.704076 TGGATTGGAGGGTTTGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
1849 1926 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
1850 1927 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
1851 1928 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
1852 1929 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
1853 1930 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
1854 1931 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
1855 1932 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
1856 1933 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
1857 1934 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
1858 1935 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
1859 1936 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
1860 1937 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
1861 1938 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
1862 1939 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
1863 1940 6.323739 GGGTTTGGAGGATAATAAATGCTCAA 59.676 38.462 8.48 0.00 38.10 3.02
1864 1941 7.015584 GGGTTTGGAGGATAATAAATGCTCAAT 59.984 37.037 8.48 0.00 38.10 2.57
1865 1942 9.077885 GGTTTGGAGGATAATAAATGCTCAATA 57.922 33.333 8.48 0.00 38.10 1.90
1868 1945 9.866655 TTGGAGGATAATAAATGCTCAATAACT 57.133 29.630 8.48 0.00 38.10 2.24
1901 1978 7.051000 AGTCTCTTTAGTATTTGGATCCAAGC 58.949 38.462 25.69 19.18 37.24 4.01
1902 1979 6.823689 GTCTCTTTAGTATTTGGATCCAAGCA 59.176 38.462 25.69 14.00 37.24 3.91
1903 1980 7.500559 GTCTCTTTAGTATTTGGATCCAAGCAT 59.499 37.037 25.69 19.69 37.24 3.79
1904 1981 7.500227 TCTCTTTAGTATTTGGATCCAAGCATG 59.500 37.037 25.69 12.43 37.24 4.06
1915 1992 2.322355 CCAAGCATGGGTGAGACTAG 57.678 55.000 0.00 0.00 43.51 2.57
1916 1993 1.661341 CAAGCATGGGTGAGACTAGC 58.339 55.000 0.00 0.00 0.00 3.42
1917 1994 1.065926 CAAGCATGGGTGAGACTAGCA 60.066 52.381 0.00 0.00 0.00 3.49
1918 1995 1.279496 AGCATGGGTGAGACTAGCAA 58.721 50.000 0.00 0.00 0.00 3.91
1919 1996 1.209019 AGCATGGGTGAGACTAGCAAG 59.791 52.381 0.00 0.00 0.00 4.01
1920 1997 1.065854 GCATGGGTGAGACTAGCAAGT 60.066 52.381 0.00 0.00 39.21 3.16
1921 1998 2.616510 GCATGGGTGAGACTAGCAAGTT 60.617 50.000 0.00 0.00 35.56 2.66
1922 1999 3.679389 CATGGGTGAGACTAGCAAGTTT 58.321 45.455 0.00 0.00 35.56 2.66
1923 2000 3.857157 TGGGTGAGACTAGCAAGTTTT 57.143 42.857 0.00 0.00 35.56 2.43
1924 2001 4.967084 TGGGTGAGACTAGCAAGTTTTA 57.033 40.909 0.00 0.00 35.56 1.52
1925 2002 4.894784 TGGGTGAGACTAGCAAGTTTTAG 58.105 43.478 0.00 0.00 35.56 1.85
1926 2003 4.347000 TGGGTGAGACTAGCAAGTTTTAGT 59.653 41.667 0.00 0.00 35.56 2.24
1927 2004 4.930405 GGGTGAGACTAGCAAGTTTTAGTC 59.070 45.833 13.08 13.08 43.83 2.59
1928 2005 4.930405 GGTGAGACTAGCAAGTTTTAGTCC 59.070 45.833 15.72 10.59 44.32 3.85
1929 2006 4.930405 GTGAGACTAGCAAGTTTTAGTCCC 59.070 45.833 15.72 8.76 44.32 4.46
1930 2007 4.591498 TGAGACTAGCAAGTTTTAGTCCCA 59.409 41.667 15.72 10.61 44.32 4.37
1931 2008 4.895961 AGACTAGCAAGTTTTAGTCCCAC 58.104 43.478 15.72 0.00 44.32 4.61
1932 2009 4.593634 AGACTAGCAAGTTTTAGTCCCACT 59.406 41.667 15.72 1.62 44.32 4.00
1933 2010 5.778750 AGACTAGCAAGTTTTAGTCCCACTA 59.221 40.000 15.72 0.00 44.32 2.74
1934 2011 5.791666 ACTAGCAAGTTTTAGTCCCACTAC 58.208 41.667 0.00 0.00 27.15 2.73
1935 2012 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
1936 2013 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
1937 2014 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
1938 2015 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
1939 2016 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
1940 2017 7.444487 AGCAAGTTTTAGTCCCACTACTTTTAG 59.556 37.037 0.00 0.00 28.93 1.85
1941 2018 7.228108 GCAAGTTTTAGTCCCACTACTTTTAGT 59.772 37.037 0.00 0.00 39.30 2.24
1942 2019 8.771766 CAAGTTTTAGTCCCACTACTTTTAGTC 58.228 37.037 0.00 0.00 36.31 2.59
1943 2020 8.026396 AGTTTTAGTCCCACTACTTTTAGTCA 57.974 34.615 0.00 0.00 36.31 3.41
1944 2021 8.657712 AGTTTTAGTCCCACTACTTTTAGTCAT 58.342 33.333 0.00 0.00 36.31 3.06
1945 2022 8.718734 GTTTTAGTCCCACTACTTTTAGTCATG 58.281 37.037 0.00 0.00 36.31 3.07
1946 2023 5.422214 AGTCCCACTACTTTTAGTCATGG 57.578 43.478 0.00 0.00 36.31 3.66
1947 2024 4.225267 AGTCCCACTACTTTTAGTCATGGG 59.775 45.833 16.70 16.70 46.94 4.00
1962 2039 4.761975 GTCATGGGACTAAAACGTATCCA 58.238 43.478 0.00 0.00 40.99 3.41
1963 2040 5.180271 GTCATGGGACTAAAACGTATCCAA 58.820 41.667 0.00 0.00 40.99 3.53
1964 2041 5.293569 GTCATGGGACTAAAACGTATCCAAG 59.706 44.000 0.00 0.00 40.99 3.61
1965 2042 3.602483 TGGGACTAAAACGTATCCAAGC 58.398 45.455 0.00 0.00 32.45 4.01
1966 2043 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
1967 2044 4.196971 GGGACTAAAACGTATCCAAGCAT 58.803 43.478 0.00 0.00 32.45 3.79
1968 2045 4.035208 GGGACTAAAACGTATCCAAGCATG 59.965 45.833 0.00 0.00 32.45 4.06
1969 2046 4.495844 GGACTAAAACGTATCCAAGCATGC 60.496 45.833 10.51 10.51 0.00 4.06
1970 2047 4.261801 ACTAAAACGTATCCAAGCATGCT 58.738 39.130 16.30 16.30 0.00 3.79
1971 2048 3.764885 AAAACGTATCCAAGCATGCTC 57.235 42.857 22.93 6.18 0.00 4.26
1972 2049 2.698855 AACGTATCCAAGCATGCTCT 57.301 45.000 22.93 8.65 0.00 4.09
1973 2050 3.819564 AACGTATCCAAGCATGCTCTA 57.180 42.857 22.93 9.92 0.00 2.43
1974 2051 4.342862 AACGTATCCAAGCATGCTCTAT 57.657 40.909 22.93 16.43 0.00 1.98
1975 2052 3.657634 ACGTATCCAAGCATGCTCTATG 58.342 45.455 22.93 15.78 39.88 2.23
2073 2154 5.391950 GCGAGTCCAAATTTAGCAATCTTGA 60.392 40.000 0.00 0.00 0.00 3.02
2075 2156 5.958955 AGTCCAAATTTAGCAATCTTGAGC 58.041 37.500 0.00 0.00 0.00 4.26
2080 2161 7.176515 TCCAAATTTAGCAATCTTGAGCTTACA 59.823 33.333 0.00 0.00 42.05 2.41
2176 2257 3.663025 CCACCAACCAACCAAATCAATC 58.337 45.455 0.00 0.00 0.00 2.67
2246 2327 8.327271 AGTAACCGTATCTAGCTATATTCTCCA 58.673 37.037 0.00 0.00 0.00 3.86
2267 2348 4.458989 CCATTTAGGCACTTGCACTTTCTA 59.541 41.667 3.15 0.00 44.36 2.10
2279 2360 5.784578 TGCACTTTCTACTACAGTCTCAA 57.215 39.130 0.00 0.00 0.00 3.02
2331 2412 9.911788 ATCCATTATCTAACTCAACAATCAGTT 57.088 29.630 0.00 0.00 42.42 3.16
2696 2893 7.168219 ACCTTCTGTGTTTAAAGCATATCTCA 58.832 34.615 0.00 0.00 0.00 3.27
3412 3609 5.645067 CACTTTACTGGATGCTGATCTTGAA 59.355 40.000 0.00 0.00 0.00 2.69
3891 4088 2.607750 TCCTCAGAGGTGCCACCC 60.608 66.667 16.65 1.92 39.75 4.61
3903 4100 0.331278 TGCCACCCATCGAATTTCCT 59.669 50.000 0.00 0.00 0.00 3.36
3948 4145 3.712907 GAACCAGCCCGGGTAGCA 61.713 66.667 24.63 0.00 41.32 3.49
4068 4265 2.496470 GGGGAATAGCGTGGATAGTAGG 59.504 54.545 0.00 0.00 0.00 3.18
4127 4324 3.133721 ACTGAGAGGGAGGAAATGATTCG 59.866 47.826 0.00 0.00 36.36 3.34
4224 4421 5.723295 AGAAATATTTTTGCGCCATCTGTT 58.277 33.333 4.18 0.00 0.00 3.16
4281 4478 1.147376 CGTGGTCCCAGTTTGGTCA 59.853 57.895 0.00 0.00 35.17 4.02
4608 4826 2.357637 GCATAAGGGCTAAAATCACGCA 59.642 45.455 0.00 0.00 0.00 5.24
4773 4991 8.799367 ACAACCTATTTATTTTAGCTCGGTTTT 58.201 29.630 0.00 0.00 30.43 2.43
4774 4992 9.072294 CAACCTATTTATTTTAGCTCGGTTTTG 57.928 33.333 0.00 0.00 30.43 2.44
4775 4993 7.255569 ACCTATTTATTTTAGCTCGGTTTTGC 58.744 34.615 0.00 0.00 0.00 3.68
4776 4994 7.094118 ACCTATTTATTTTAGCTCGGTTTTGCA 60.094 33.333 0.00 0.00 0.00 4.08
4777 4995 7.920682 CCTATTTATTTTAGCTCGGTTTTGCAT 59.079 33.333 0.00 0.00 0.00 3.96
4778 4996 9.944663 CTATTTATTTTAGCTCGGTTTTGCATA 57.055 29.630 0.00 0.00 0.00 3.14
4780 4998 8.627487 TTTATTTTAGCTCGGTTTTGCATATG 57.373 30.769 0.00 0.00 0.00 1.78
4781 4999 5.637006 TTTTAGCTCGGTTTTGCATATGT 57.363 34.783 4.29 0.00 0.00 2.29
4811 5029 7.106439 TCAGTTTATTGTGTGTGTGGAATTT 57.894 32.000 0.00 0.00 0.00 1.82
4860 5078 0.541764 ACACATCGCCCCCAAACATT 60.542 50.000 0.00 0.00 0.00 2.71
4904 5129 5.705905 AGTTACTATCTTCAGTTGTTTGGCC 59.294 40.000 0.00 0.00 0.00 5.36
4905 5130 3.421844 ACTATCTTCAGTTGTTTGGCCC 58.578 45.455 0.00 0.00 0.00 5.80
4906 5131 1.632589 ATCTTCAGTTGTTTGGCCCC 58.367 50.000 0.00 0.00 0.00 5.80
4907 5132 0.469144 TCTTCAGTTGTTTGGCCCCC 60.469 55.000 0.00 0.00 0.00 5.40
4908 5133 0.758685 CTTCAGTTGTTTGGCCCCCA 60.759 55.000 0.00 0.00 0.00 4.96
4909 5134 0.325671 TTCAGTTGTTTGGCCCCCAA 60.326 50.000 0.00 0.00 42.29 4.12
5004 5249 6.807720 TGTTCTTACGAAAATGTAGCATCGTA 59.192 34.615 3.07 3.07 45.69 3.43
5011 5256 6.128391 ACGAAAATGTAGCATCGTAACATTGT 60.128 34.615 0.00 0.00 45.69 2.71
5041 5286 3.807553 ACATTGATACCGACATGCATGA 58.192 40.909 32.75 10.72 0.00 3.07
5046 5291 2.760634 TACCGACATGCATGACTGTT 57.239 45.000 32.75 10.28 0.00 3.16
5077 5322 7.824704 ATACGATCTGATACATGAAGAATGC 57.175 36.000 0.00 0.00 40.22 3.56
5230 5477 2.433868 TCGTGGAAGCGATAATAGCC 57.566 50.000 0.00 0.00 35.83 3.93
5239 5486 6.714810 TGGAAGCGATAATAGCCATGTAAATT 59.285 34.615 0.00 0.00 34.64 1.82
5360 5611 3.935240 TCCTAGTGGGGGATGCTTATA 57.065 47.619 0.00 0.00 35.33 0.98
5500 5754 4.248859 CTGCTGCTATCACTAACTGTGTT 58.751 43.478 0.00 0.00 46.27 3.32
5528 5782 5.181811 TGGATTGATGTGCTGTGTTTCTTAG 59.818 40.000 0.00 0.00 0.00 2.18
5533 5787 3.735591 TGTGCTGTGTTTCTTAGGGTAC 58.264 45.455 0.00 0.00 0.00 3.34
5680 6027 5.497474 CCACTAAGTATTGCTACCTTTGGT 58.503 41.667 0.00 0.00 40.16 3.67
5712 6059 1.074727 TGCAAGTTTAAGCCCTAGCCA 59.925 47.619 0.00 0.00 41.25 4.75
5788 6137 9.892130 GTATTTCCTCTGTCCCATAATATAAGG 57.108 37.037 0.00 0.00 0.00 2.69
5813 6191 8.665685 GGTGTTATTTATGAACGAACTTGAGAT 58.334 33.333 0.00 0.00 0.00 2.75
5883 6280 4.809426 CAGGGACGTACATTTCCTATGAAC 59.191 45.833 0.00 0.00 31.90 3.18
5919 6316 5.003160 CACATAACTGGAGAAACACATGGA 58.997 41.667 0.00 0.00 0.00 3.41
5947 6344 8.579850 ACATGAATTCAAAAGTAGCCTCAATA 57.420 30.769 13.09 0.00 0.00 1.90
5948 6345 8.680903 ACATGAATTCAAAAGTAGCCTCAATAG 58.319 33.333 13.09 0.00 0.00 1.73
5949 6346 7.088589 TGAATTCAAAAGTAGCCTCAATAGC 57.911 36.000 5.45 0.00 0.00 2.97
5950 6347 6.095440 TGAATTCAAAAGTAGCCTCAATAGCC 59.905 38.462 5.45 0.00 0.00 3.93
5951 6348 4.844349 TCAAAAGTAGCCTCAATAGCCT 57.156 40.909 0.00 0.00 0.00 4.58
5952 6349 4.770795 TCAAAAGTAGCCTCAATAGCCTC 58.229 43.478 0.00 0.00 0.00 4.70
5953 6350 4.225042 TCAAAAGTAGCCTCAATAGCCTCA 59.775 41.667 0.00 0.00 0.00 3.86
5954 6351 4.844349 AAAGTAGCCTCAATAGCCTCAA 57.156 40.909 0.00 0.00 0.00 3.02
5955 6352 5.379706 AAAGTAGCCTCAATAGCCTCAAT 57.620 39.130 0.00 0.00 0.00 2.57
6060 6462 0.606401 GAAGGGCACTGCTAGCACAA 60.606 55.000 14.93 0.00 38.04 3.33
6061 6463 0.038744 AAGGGCACTGCTAGCACAAT 59.961 50.000 14.93 0.00 38.04 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.929415 CCACCCACCAAACAAAATATACAAC 59.071 40.000 0.00 0.00 0.00 3.32
1 2 5.012148 CCCACCCACCAAACAAAATATACAA 59.988 40.000 0.00 0.00 0.00 2.41
2 3 4.528596 CCCACCCACCAAACAAAATATACA 59.471 41.667 0.00 0.00 0.00 2.29
3 4 4.528987 ACCCACCCACCAAACAAAATATAC 59.471 41.667 0.00 0.00 0.00 1.47
4 5 4.528596 CACCCACCCACCAAACAAAATATA 59.471 41.667 0.00 0.00 0.00 0.86
5 6 3.326297 CACCCACCCACCAAACAAAATAT 59.674 43.478 0.00 0.00 0.00 1.28
6 7 2.700897 CACCCACCCACCAAACAAAATA 59.299 45.455 0.00 0.00 0.00 1.40
7 8 1.488393 CACCCACCCACCAAACAAAAT 59.512 47.619 0.00 0.00 0.00 1.82
8 9 0.905357 CACCCACCCACCAAACAAAA 59.095 50.000 0.00 0.00 0.00 2.44
9 10 0.978146 CCACCCACCCACCAAACAAA 60.978 55.000 0.00 0.00 0.00 2.83
10 11 1.381872 CCACCCACCCACCAAACAA 60.382 57.895 0.00 0.00 0.00 2.83
11 12 2.280416 CCACCCACCCACCAAACA 59.720 61.111 0.00 0.00 0.00 2.83
12 13 1.530655 CTCCACCCACCCACCAAAC 60.531 63.158 0.00 0.00 0.00 2.93
13 14 2.773527 CCTCCACCCACCCACCAAA 61.774 63.158 0.00 0.00 0.00 3.28
14 15 3.182263 CCTCCACCCACCCACCAA 61.182 66.667 0.00 0.00 0.00 3.67
31 32 1.775934 CGCTAAATACCCCCTCCCCC 61.776 65.000 0.00 0.00 0.00 5.40
32 33 1.759236 CGCTAAATACCCCCTCCCC 59.241 63.158 0.00 0.00 0.00 4.81
33 34 1.759236 CCGCTAAATACCCCCTCCC 59.241 63.158 0.00 0.00 0.00 4.30
34 35 1.072678 GCCGCTAAATACCCCCTCC 59.927 63.158 0.00 0.00 0.00 4.30
35 36 1.072678 GGCCGCTAAATACCCCCTC 59.927 63.158 0.00 0.00 0.00 4.30
36 37 1.385489 AGGCCGCTAAATACCCCCT 60.385 57.895 0.00 0.00 0.00 4.79
37 38 1.228154 CAGGCCGCTAAATACCCCC 60.228 63.158 0.00 0.00 0.00 5.40
38 39 0.760572 TACAGGCCGCTAAATACCCC 59.239 55.000 0.00 0.00 0.00 4.95
39 40 2.103601 TCTTACAGGCCGCTAAATACCC 59.896 50.000 0.00 0.00 0.00 3.69
40 41 3.464111 TCTTACAGGCCGCTAAATACC 57.536 47.619 0.00 0.00 0.00 2.73
41 42 4.632688 TGTTTCTTACAGGCCGCTAAATAC 59.367 41.667 0.00 0.00 31.68 1.89
42 43 4.834534 TGTTTCTTACAGGCCGCTAAATA 58.165 39.130 0.00 0.00 31.68 1.40
43 44 3.681593 TGTTTCTTACAGGCCGCTAAAT 58.318 40.909 0.00 0.00 31.68 1.40
44 45 3.128852 TGTTTCTTACAGGCCGCTAAA 57.871 42.857 0.00 0.00 31.68 1.85
45 46 2.843401 TGTTTCTTACAGGCCGCTAA 57.157 45.000 0.00 0.00 31.68 3.09
46 47 3.740141 GCTATGTTTCTTACAGGCCGCTA 60.740 47.826 0.00 0.00 40.83 4.26
47 48 2.906354 CTATGTTTCTTACAGGCCGCT 58.094 47.619 0.00 0.00 40.83 5.52
48 49 1.330829 GCTATGTTTCTTACAGGCCGC 59.669 52.381 0.00 0.00 40.83 6.53
49 50 2.906354 AGCTATGTTTCTTACAGGCCG 58.094 47.619 0.00 0.00 40.83 6.13
50 51 6.944234 AATAAGCTATGTTTCTTACAGGCC 57.056 37.500 0.00 0.00 40.83 5.19
51 52 9.110502 AGTAAATAAGCTATGTTTCTTACAGGC 57.889 33.333 0.00 0.00 40.83 4.85
53 54 9.922305 GCAGTAAATAAGCTATGTTTCTTACAG 57.078 33.333 0.00 0.00 40.83 2.74
54 55 9.443323 TGCAGTAAATAAGCTATGTTTCTTACA 57.557 29.630 0.00 0.00 41.97 2.41
57 58 9.231297 TCTTGCAGTAAATAAGCTATGTTTCTT 57.769 29.630 0.00 0.00 0.00 2.52
58 59 8.792830 TCTTGCAGTAAATAAGCTATGTTTCT 57.207 30.769 0.00 0.00 0.00 2.52
76 77 5.824429 TGTTGTTTCTCTCAAATCTTGCAG 58.176 37.500 0.00 0.00 0.00 4.41
77 78 5.833406 TGTTGTTTCTCTCAAATCTTGCA 57.167 34.783 0.00 0.00 0.00 4.08
78 79 7.489113 TCTTTTGTTGTTTCTCTCAAATCTTGC 59.511 33.333 0.00 0.00 31.45 4.01
79 80 8.915871 TCTTTTGTTGTTTCTCTCAAATCTTG 57.084 30.769 0.00 0.00 31.45 3.02
80 81 8.960591 TCTCTTTTGTTGTTTCTCTCAAATCTT 58.039 29.630 0.00 0.00 31.45 2.40
94 95 6.932400 TGGTATATCGTTGTCTCTTTTGTTGT 59.068 34.615 0.00 0.00 0.00 3.32
98 99 6.538742 ACCATGGTATATCGTTGTCTCTTTTG 59.461 38.462 18.10 0.00 0.00 2.44
100 101 6.235231 ACCATGGTATATCGTTGTCTCTTT 57.765 37.500 18.10 0.00 0.00 2.52
103 104 4.227538 CGACCATGGTATATCGTTGTCTC 58.772 47.826 19.80 0.00 0.00 3.36
105 106 3.973657 ACGACCATGGTATATCGTTGTC 58.026 45.455 19.80 0.00 44.98 3.18
110 111 7.295201 CCAAATTAAACGACCATGGTATATCG 58.705 38.462 19.80 19.35 40.39 2.92
116 117 3.768878 TCCCAAATTAAACGACCATGGT 58.231 40.909 19.89 19.89 0.00 3.55
117 118 4.792521 TTCCCAAATTAAACGACCATGG 57.207 40.909 11.19 11.19 0.00 3.66
141 142 3.648009 ACCCACGCAAACACAAAATATG 58.352 40.909 0.00 0.00 0.00 1.78
142 143 5.455056 TTACCCACGCAAACACAAAATAT 57.545 34.783 0.00 0.00 0.00 1.28
143 144 4.913335 TTACCCACGCAAACACAAAATA 57.087 36.364 0.00 0.00 0.00 1.40
145 146 3.802948 ATTACCCACGCAAACACAAAA 57.197 38.095 0.00 0.00 0.00 2.44
151 152 5.116882 AGATAGAGAATTACCCACGCAAAC 58.883 41.667 0.00 0.00 0.00 2.93
156 157 5.048364 CCAGAGAGATAGAGAATTACCCACG 60.048 48.000 0.00 0.00 0.00 4.94
167 168 5.192927 ACAAGACTGACCAGAGAGATAGAG 58.807 45.833 3.76 0.00 0.00 2.43
169 170 5.913137 AACAAGACTGACCAGAGAGATAG 57.087 43.478 3.76 0.00 0.00 2.08
171 172 5.336055 CGTTAACAAGACTGACCAGAGAGAT 60.336 44.000 6.39 0.00 0.00 2.75
174 175 3.887110 TCGTTAACAAGACTGACCAGAGA 59.113 43.478 6.39 0.00 0.00 3.10
181 182 8.616942 TGAAATTTCATTCGTTAACAAGACTGA 58.383 29.630 16.91 3.31 31.01 3.41
193 194 8.638565 GTGAAATCGATTTGAAATTTCATTCGT 58.361 29.630 31.64 23.35 45.76 3.85
195 196 8.924691 TGGTGAAATCGATTTGAAATTTCATTC 58.075 29.630 27.27 18.22 45.76 2.67
261 262 7.781056 TGGAAGTTTTTGTTCTTAGCTGAAAT 58.219 30.769 0.00 0.00 0.00 2.17
267 268 8.648557 AGATTTTGGAAGTTTTTGTTCTTAGC 57.351 30.769 0.00 0.00 0.00 3.09
292 302 6.433847 CCATGATATACTTGGTGACCCTAA 57.566 41.667 0.00 0.00 38.51 2.69
309 329 5.573914 CGGAGGGAGTAGATAGTACCATGAT 60.574 48.000 0.00 0.00 31.59 2.45
310 330 4.263374 CGGAGGGAGTAGATAGTACCATGA 60.263 50.000 0.00 0.00 31.59 3.07
321 341 8.945195 TTATATTTTGATACGGAGGGAGTAGA 57.055 34.615 0.00 0.00 0.00 2.59
411 441 1.019278 CAGACGCGCCCAACACTAAT 61.019 55.000 5.73 0.00 0.00 1.73
465 495 3.484229 CGAAAGATCAACCGAGCATGAAC 60.484 47.826 0.00 0.00 0.00 3.18
475 505 1.722011 TTCCTCGCGAAAGATCAACC 58.278 50.000 11.33 0.00 0.00 3.77
556 595 2.310538 CACTCCCCCATTTATCTTGGC 58.689 52.381 0.00 0.00 32.60 4.52
570 609 4.569719 TTGATCTAACCTTTCCACTCCC 57.430 45.455 0.00 0.00 0.00 4.30
575 614 4.949856 GCTGGATTTGATCTAACCTTTCCA 59.050 41.667 8.88 8.88 0.00 3.53
631 670 0.739462 CGTGCGCTTCTGGTCCAATA 60.739 55.000 9.73 0.00 0.00 1.90
827 888 4.760047 CGGGAACAGTGGAGCCGG 62.760 72.222 0.00 0.00 0.00 6.13
860 926 0.392193 ATCAAGAACCAGGCAGCTCG 60.392 55.000 0.00 0.00 0.00 5.03
869 935 0.911769 ATGGAGCCGATCAAGAACCA 59.088 50.000 0.00 0.00 0.00 3.67
920 986 3.562732 AAAGAAACCCCGCCTCCCG 62.563 63.158 0.00 0.00 0.00 5.14
951 1018 1.831652 CTGTCCAAGAACCGCCTCCT 61.832 60.000 0.00 0.00 0.00 3.69
952 1019 1.376037 CTGTCCAAGAACCGCCTCC 60.376 63.158 0.00 0.00 0.00 4.30
954 1021 1.831652 CTCCTGTCCAAGAACCGCCT 61.832 60.000 0.00 0.00 0.00 5.52
955 1022 1.376037 CTCCTGTCCAAGAACCGCC 60.376 63.158 0.00 0.00 0.00 6.13
956 1023 1.376037 CCTCCTGTCCAAGAACCGC 60.376 63.158 0.00 0.00 0.00 5.68
957 1024 1.296715 CCCTCCTGTCCAAGAACCG 59.703 63.158 0.00 0.00 0.00 4.44
1368 1435 1.463444 ACACAAGCGAGGCGTATTTTC 59.537 47.619 0.00 0.00 0.00 2.29
1375 1448 2.427410 GCAAACACAAGCGAGGCG 60.427 61.111 0.00 0.00 0.00 5.52
1380 1453 2.005537 GCACGAGCAAACACAAGCG 61.006 57.895 0.00 0.00 41.58 4.68
1406 1479 7.865707 AGCAGTATTTCTTGTGTTGTTTAGAG 58.134 34.615 0.00 0.00 0.00 2.43
1429 1502 1.590259 GATCTCGGCCGACAAGAGC 60.590 63.158 27.28 19.72 32.42 4.09
1503 1576 4.793201 AGCCAAGGTAAAGAAGTTCAAGT 58.207 39.130 5.50 0.00 0.00 3.16
1621 1698 5.008811 GCACCCTCATAGTACTACTGTAGTG 59.991 48.000 26.45 12.21 39.81 2.74
1622 1699 5.104024 AGCACCCTCATAGTACTACTGTAGT 60.104 44.000 22.72 22.72 42.68 2.73
1623 1700 5.378332 AGCACCCTCATAGTACTACTGTAG 58.622 45.833 13.13 13.13 0.00 2.74
1624 1701 5.384145 AGCACCCTCATAGTACTACTGTA 57.616 43.478 4.31 0.00 0.00 2.74
1639 1716 0.625849 CCCTTGTATCCAAGCACCCT 59.374 55.000 0.00 0.00 45.57 4.34
1640 1717 0.623723 TCCCTTGTATCCAAGCACCC 59.376 55.000 0.00 0.00 45.57 4.61
1641 1718 1.282157 AGTCCCTTGTATCCAAGCACC 59.718 52.381 0.00 0.00 45.57 5.01
1642 1719 2.789409 AGTCCCTTGTATCCAAGCAC 57.211 50.000 0.00 0.00 45.57 4.40
1643 1720 5.450818 AAATAGTCCCTTGTATCCAAGCA 57.549 39.130 0.00 0.00 45.57 3.91
1644 1721 6.775594 AAAAATAGTCCCTTGTATCCAAGC 57.224 37.500 0.00 0.00 45.57 4.01
1645 1722 9.110502 GACTAAAAATAGTCCCTTGTATCCAAG 57.889 37.037 4.96 0.00 40.86 3.61
1646 1723 8.832735 AGACTAAAAATAGTCCCTTGTATCCAA 58.167 33.333 11.35 0.00 45.66 3.53
1647 1724 8.265055 CAGACTAAAAATAGTCCCTTGTATCCA 58.735 37.037 11.35 0.00 45.66 3.41
1648 1725 8.483758 TCAGACTAAAAATAGTCCCTTGTATCC 58.516 37.037 11.35 0.00 45.66 2.59
1649 1726 9.315525 GTCAGACTAAAAATAGTCCCTTGTATC 57.684 37.037 11.35 0.00 45.66 2.24
1650 1727 9.047947 AGTCAGACTAAAAATAGTCCCTTGTAT 57.952 33.333 0.00 0.00 45.66 2.29
1651 1728 8.431910 AGTCAGACTAAAAATAGTCCCTTGTA 57.568 34.615 0.00 0.00 45.66 2.41
1652 1729 7.317722 AGTCAGACTAAAAATAGTCCCTTGT 57.682 36.000 0.00 0.00 45.66 3.16
1653 1730 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
1672 1749 9.654663 GCCTCTAAAAGAGACTATTTTTAGTCA 57.345 33.333 12.70 4.01 45.07 3.41
1673 1750 9.878667 AGCCTCTAAAAGAGACTATTTTTAGTC 57.121 33.333 12.70 5.24 45.07 2.59
1680 1757 9.878667 GAACTTTAGCCTCTAAAAGAGACTATT 57.121 33.333 5.50 0.00 45.07 1.73
1681 1758 8.479689 GGAACTTTAGCCTCTAAAAGAGACTAT 58.520 37.037 5.50 0.00 45.07 2.12
1682 1759 7.453752 TGGAACTTTAGCCTCTAAAAGAGACTA 59.546 37.037 5.50 0.91 45.07 2.59
1683 1760 6.270231 TGGAACTTTAGCCTCTAAAAGAGACT 59.730 38.462 5.50 1.89 45.07 3.24
1684 1761 6.465084 TGGAACTTTAGCCTCTAAAAGAGAC 58.535 40.000 5.50 0.00 45.07 3.36
1685 1762 6.681729 TGGAACTTTAGCCTCTAAAAGAGA 57.318 37.500 5.50 0.00 45.07 3.10
1686 1763 6.128145 GCTTGGAACTTTAGCCTCTAAAAGAG 60.128 42.308 2.08 0.00 41.96 2.85
1687 1764 5.705905 GCTTGGAACTTTAGCCTCTAAAAGA 59.294 40.000 2.08 0.00 36.43 2.52
1688 1765 5.473504 TGCTTGGAACTTTAGCCTCTAAAAG 59.526 40.000 0.00 0.00 38.41 2.27
1689 1766 5.240844 GTGCTTGGAACTTTAGCCTCTAAAA 59.759 40.000 0.00 0.00 34.03 1.52
1690 1767 4.760204 GTGCTTGGAACTTTAGCCTCTAAA 59.240 41.667 0.00 0.00 34.03 1.85
1691 1768 4.324267 GTGCTTGGAACTTTAGCCTCTAA 58.676 43.478 0.00 0.00 34.03 2.10
1692 1769 3.307480 GGTGCTTGGAACTTTAGCCTCTA 60.307 47.826 0.00 0.00 34.03 2.43
1693 1770 2.553247 GGTGCTTGGAACTTTAGCCTCT 60.553 50.000 0.00 0.00 34.03 3.69
1694 1771 1.813178 GGTGCTTGGAACTTTAGCCTC 59.187 52.381 0.00 0.00 34.03 4.70
1695 1772 1.547901 GGGTGCTTGGAACTTTAGCCT 60.548 52.381 0.00 0.00 34.03 4.58
1696 1773 0.888619 GGGTGCTTGGAACTTTAGCC 59.111 55.000 0.00 0.00 34.03 3.93
1697 1774 0.888619 GGGGTGCTTGGAACTTTAGC 59.111 55.000 0.00 0.00 35.50 3.09
1698 1775 2.162681 CAGGGGTGCTTGGAACTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
1699 1776 1.777878 TCAGGGGTGCTTGGAACTTTA 59.222 47.619 0.00 0.00 0.00 1.85
1700 1777 0.555769 TCAGGGGTGCTTGGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
1701 1778 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
1702 1779 1.062488 AGTCAGGGGTGCTTGGAACT 61.062 55.000 0.00 0.00 0.00 3.01
1703 1780 0.690762 TAGTCAGGGGTGCTTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
1704 1781 1.440618 TTAGTCAGGGGTGCTTGGAA 58.559 50.000 0.00 0.00 0.00 3.53
1705 1782 1.351017 CTTTAGTCAGGGGTGCTTGGA 59.649 52.381 0.00 0.00 0.00 3.53
1706 1783 1.351017 TCTTTAGTCAGGGGTGCTTGG 59.649 52.381 0.00 0.00 0.00 3.61
1707 1784 2.303022 TCTCTTTAGTCAGGGGTGCTTG 59.697 50.000 0.00 0.00 0.00 4.01
1708 1785 2.569404 CTCTCTTTAGTCAGGGGTGCTT 59.431 50.000 0.00 0.00 0.00 3.91
1709 1786 2.183679 CTCTCTTTAGTCAGGGGTGCT 58.816 52.381 0.00 0.00 0.00 4.40
1710 1787 1.208293 CCTCTCTTTAGTCAGGGGTGC 59.792 57.143 0.00 0.00 0.00 5.01
1711 1788 1.208293 GCCTCTCTTTAGTCAGGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
1712 1789 1.079658 AGCCTCTCTTTAGTCAGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
1713 1790 1.872773 AGCCTCTCTTTAGTCAGGGG 58.127 55.000 0.00 0.00 0.00 4.79
1714 1791 2.962421 CCTAGCCTCTCTTTAGTCAGGG 59.038 54.545 0.00 0.00 0.00 4.45
1715 1792 3.634910 GTCCTAGCCTCTCTTTAGTCAGG 59.365 52.174 0.00 0.00 0.00 3.86
1716 1793 4.532834 AGTCCTAGCCTCTCTTTAGTCAG 58.467 47.826 0.00 0.00 0.00 3.51
1717 1794 4.594675 AGTCCTAGCCTCTCTTTAGTCA 57.405 45.455 0.00 0.00 0.00 3.41
1718 1795 5.687780 ACTAGTCCTAGCCTCTCTTTAGTC 58.312 45.833 1.22 0.00 36.66 2.59
1719 1796 5.430745 AGACTAGTCCTAGCCTCTCTTTAGT 59.569 44.000 19.38 0.00 36.66 2.24
1720 1797 5.937111 AGACTAGTCCTAGCCTCTCTTTAG 58.063 45.833 19.38 0.00 36.66 1.85
1721 1798 5.979656 AGACTAGTCCTAGCCTCTCTTTA 57.020 43.478 19.38 0.00 36.66 1.85
1722 1799 4.873724 AGACTAGTCCTAGCCTCTCTTT 57.126 45.455 19.38 0.00 36.66 2.52
1723 1800 4.228666 TCAAGACTAGTCCTAGCCTCTCTT 59.771 45.833 19.38 0.17 36.66 2.85
1724 1801 3.783642 TCAAGACTAGTCCTAGCCTCTCT 59.216 47.826 19.38 0.00 36.66 3.10
1725 1802 4.134563 CTCAAGACTAGTCCTAGCCTCTC 58.865 52.174 19.38 0.00 36.66 3.20
1726 1803 3.117663 CCTCAAGACTAGTCCTAGCCTCT 60.118 52.174 19.38 0.00 36.66 3.69
1727 1804 3.219281 CCTCAAGACTAGTCCTAGCCTC 58.781 54.545 19.38 0.00 36.66 4.70
1728 1805 2.688515 GCCTCAAGACTAGTCCTAGCCT 60.689 54.545 19.38 0.00 36.66 4.58
1729 1806 1.684450 GCCTCAAGACTAGTCCTAGCC 59.316 57.143 19.38 0.89 36.66 3.93
1730 1807 2.661718 AGCCTCAAGACTAGTCCTAGC 58.338 52.381 19.38 14.54 36.66 3.42
1731 1808 6.777213 TTTTAGCCTCAAGACTAGTCCTAG 57.223 41.667 19.38 13.33 39.04 3.02
1732 1809 7.126733 AGATTTTAGCCTCAAGACTAGTCCTA 58.873 38.462 19.38 9.39 0.00 2.94
1733 1810 5.961421 AGATTTTAGCCTCAAGACTAGTCCT 59.039 40.000 19.38 10.36 0.00 3.85
1734 1811 6.228616 AGATTTTAGCCTCAAGACTAGTCC 57.771 41.667 19.38 2.89 0.00 3.85
1735 1812 8.554835 AAAAGATTTTAGCCTCAAGACTAGTC 57.445 34.615 15.41 15.41 0.00 2.59
1736 1813 9.660180 CTAAAAGATTTTAGCCTCAAGACTAGT 57.340 33.333 11.10 0.00 41.97 2.57
1748 1825 9.140286 GGTTTTCCATGACTAAAAGATTTTAGC 57.860 33.333 19.97 14.60 44.42 3.09
1752 1829 9.588096 AGTAGGTTTTCCATGACTAAAAGATTT 57.412 29.630 0.00 0.00 43.73 2.17
1761 1838 9.975218 ACATATTTTAGTAGGTTTTCCATGACT 57.025 29.630 0.00 0.00 43.73 3.41
1779 1856 9.600432 AGGAGAGAGAGAGCTAATACATATTTT 57.400 33.333 0.00 0.00 0.00 1.82
1780 1857 9.243105 GAGGAGAGAGAGAGCTAATACATATTT 57.757 37.037 0.00 0.00 0.00 1.40
1781 1858 8.390143 TGAGGAGAGAGAGAGCTAATACATATT 58.610 37.037 0.00 0.00 0.00 1.28
1782 1859 7.927788 TGAGGAGAGAGAGAGCTAATACATAT 58.072 38.462 0.00 0.00 0.00 1.78
1783 1860 7.323052 TGAGGAGAGAGAGAGCTAATACATA 57.677 40.000 0.00 0.00 0.00 2.29
1784 1861 6.199557 TGAGGAGAGAGAGAGCTAATACAT 57.800 41.667 0.00 0.00 0.00 2.29
1785 1862 5.638530 TGAGGAGAGAGAGAGCTAATACA 57.361 43.478 0.00 0.00 0.00 2.29
1786 1863 7.524717 AAATGAGGAGAGAGAGAGCTAATAC 57.475 40.000 0.00 0.00 0.00 1.89
1787 1864 9.821240 ATTAAATGAGGAGAGAGAGAGCTAATA 57.179 33.333 0.00 0.00 0.00 0.98
1788 1865 8.725606 ATTAAATGAGGAGAGAGAGAGCTAAT 57.274 34.615 0.00 0.00 0.00 1.73
1789 1866 8.546083 AATTAAATGAGGAGAGAGAGAGCTAA 57.454 34.615 0.00 0.00 0.00 3.09
1790 1867 7.232534 GGAATTAAATGAGGAGAGAGAGAGCTA 59.767 40.741 0.00 0.00 0.00 3.32
1791 1868 6.041979 GGAATTAAATGAGGAGAGAGAGAGCT 59.958 42.308 0.00 0.00 0.00 4.09
1792 1869 6.041979 AGGAATTAAATGAGGAGAGAGAGAGC 59.958 42.308 0.00 0.00 0.00 4.09
1793 1870 7.506938 AGAGGAATTAAATGAGGAGAGAGAGAG 59.493 40.741 0.00 0.00 0.00 3.20
1794 1871 7.361438 AGAGGAATTAAATGAGGAGAGAGAGA 58.639 38.462 0.00 0.00 0.00 3.10
1795 1872 7.255942 GGAGAGGAATTAAATGAGGAGAGAGAG 60.256 44.444 0.00 0.00 0.00 3.20
1796 1873 6.553100 GGAGAGGAATTAAATGAGGAGAGAGA 59.447 42.308 0.00 0.00 0.00 3.10
1797 1874 6.554605 AGGAGAGGAATTAAATGAGGAGAGAG 59.445 42.308 0.00 0.00 0.00 3.20
1798 1875 6.448202 AGGAGAGGAATTAAATGAGGAGAGA 58.552 40.000 0.00 0.00 0.00 3.10
1799 1876 6.745794 AGGAGAGGAATTAAATGAGGAGAG 57.254 41.667 0.00 0.00 0.00 3.20
1800 1877 7.846823 ACTAAGGAGAGGAATTAAATGAGGAGA 59.153 37.037 0.00 0.00 0.00 3.71
1801 1878 8.028652 ACTAAGGAGAGGAATTAAATGAGGAG 57.971 38.462 0.00 0.00 0.00 3.69
1802 1879 7.996758 ACTAAGGAGAGGAATTAAATGAGGA 57.003 36.000 0.00 0.00 0.00 3.71
1803 1880 8.490311 AGAACTAAGGAGAGGAATTAAATGAGG 58.510 37.037 0.00 0.00 0.00 3.86
1804 1881 9.323985 CAGAACTAAGGAGAGGAATTAAATGAG 57.676 37.037 0.00 0.00 0.00 2.90
1805 1882 8.267894 CCAGAACTAAGGAGAGGAATTAAATGA 58.732 37.037 0.00 0.00 0.00 2.57
1806 1883 8.267894 TCCAGAACTAAGGAGAGGAATTAAATG 58.732 37.037 0.00 0.00 0.00 2.32
1807 1884 8.393959 TCCAGAACTAAGGAGAGGAATTAAAT 57.606 34.615 0.00 0.00 0.00 1.40
1808 1885 7.808279 TCCAGAACTAAGGAGAGGAATTAAA 57.192 36.000 0.00 0.00 0.00 1.52
1809 1886 7.996758 ATCCAGAACTAAGGAGAGGAATTAA 57.003 36.000 0.00 0.00 37.34 1.40
1810 1887 7.147479 CCAATCCAGAACTAAGGAGAGGAATTA 60.147 40.741 0.00 0.00 37.34 1.40
1811 1888 6.353429 CCAATCCAGAACTAAGGAGAGGAATT 60.353 42.308 0.00 0.00 37.34 2.17
1812 1889 5.131809 CCAATCCAGAACTAAGGAGAGGAAT 59.868 44.000 0.00 0.00 37.34 3.01
1813 1890 4.471386 CCAATCCAGAACTAAGGAGAGGAA 59.529 45.833 0.00 0.00 37.34 3.36
1814 1891 4.033709 CCAATCCAGAACTAAGGAGAGGA 58.966 47.826 0.00 0.00 37.34 3.71
1815 1892 4.033709 TCCAATCCAGAACTAAGGAGAGG 58.966 47.826 0.00 0.00 37.34 3.69
1816 1893 4.100808 CCTCCAATCCAGAACTAAGGAGAG 59.899 50.000 7.12 0.00 42.87 3.20
1817 1894 4.033709 CCTCCAATCCAGAACTAAGGAGA 58.966 47.826 7.12 0.00 42.87 3.71
1818 1895 3.135530 CCCTCCAATCCAGAACTAAGGAG 59.864 52.174 0.00 0.00 40.58 3.69
1819 1896 3.115390 CCCTCCAATCCAGAACTAAGGA 58.885 50.000 0.00 0.00 38.50 3.36
1820 1897 2.846827 ACCCTCCAATCCAGAACTAAGG 59.153 50.000 0.00 0.00 0.00 2.69
1821 1898 4.576330 AACCCTCCAATCCAGAACTAAG 57.424 45.455 0.00 0.00 0.00 2.18
1822 1899 4.508405 CCAAACCCTCCAATCCAGAACTAA 60.508 45.833 0.00 0.00 0.00 2.24
1823 1900 3.010138 CCAAACCCTCCAATCCAGAACTA 59.990 47.826 0.00 0.00 0.00 2.24
1824 1901 2.225117 CCAAACCCTCCAATCCAGAACT 60.225 50.000 0.00 0.00 0.00 3.01
1825 1902 2.171003 CCAAACCCTCCAATCCAGAAC 58.829 52.381 0.00 0.00 0.00 3.01
1826 1903 2.041620 CTCCAAACCCTCCAATCCAGAA 59.958 50.000 0.00 0.00 0.00 3.02
1827 1904 1.635487 CTCCAAACCCTCCAATCCAGA 59.365 52.381 0.00 0.00 0.00 3.86
1828 1905 1.341383 CCTCCAAACCCTCCAATCCAG 60.341 57.143 0.00 0.00 0.00 3.86
1829 1906 0.704076 CCTCCAAACCCTCCAATCCA 59.296 55.000 0.00 0.00 0.00 3.41
1830 1907 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
1831 1908 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
1832 1909 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
1833 1910 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
1834 1911 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
1835 1912 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
1836 1913 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
1837 1914 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
1838 1915 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
1839 1916 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
1842 1919 9.866655 AGTTATTGAGCATTTATTATCCTCCAA 57.133 29.630 0.00 0.00 0.00 3.53
1875 1952 8.204836 GCTTGGATCCAAATACTAAAGAGACTA 58.795 37.037 26.87 0.00 35.33 2.59
1876 1953 7.051000 GCTTGGATCCAAATACTAAAGAGACT 58.949 38.462 26.87 0.00 35.33 3.24
1877 1954 6.823689 TGCTTGGATCCAAATACTAAAGAGAC 59.176 38.462 26.87 8.83 35.33 3.36
1878 1955 6.957631 TGCTTGGATCCAAATACTAAAGAGA 58.042 36.000 26.87 1.15 35.33 3.10
1879 1956 7.255381 CCATGCTTGGATCCAAATACTAAAGAG 60.255 40.741 26.87 12.80 46.92 2.85
1880 1957 6.547141 CCATGCTTGGATCCAAATACTAAAGA 59.453 38.462 26.87 1.90 46.92 2.52
1881 1958 6.239120 CCCATGCTTGGATCCAAATACTAAAG 60.239 42.308 26.87 14.21 46.92 1.85
1882 1959 5.598005 CCCATGCTTGGATCCAAATACTAAA 59.402 40.000 26.87 8.81 46.92 1.85
1883 1960 5.139727 CCCATGCTTGGATCCAAATACTAA 58.860 41.667 26.87 10.11 46.92 2.24
1884 1961 4.167892 ACCCATGCTTGGATCCAAATACTA 59.832 41.667 26.87 12.31 46.92 1.82
1885 1962 3.052642 ACCCATGCTTGGATCCAAATACT 60.053 43.478 26.87 10.16 46.92 2.12
1886 1963 3.068590 CACCCATGCTTGGATCCAAATAC 59.931 47.826 26.87 19.00 46.92 1.89
1887 1964 3.053019 TCACCCATGCTTGGATCCAAATA 60.053 43.478 26.87 18.63 46.92 1.40
1888 1965 2.112998 CACCCATGCTTGGATCCAAAT 58.887 47.619 26.87 16.27 46.92 2.32
1889 1966 1.076841 TCACCCATGCTTGGATCCAAA 59.923 47.619 26.87 14.63 46.92 3.28
1890 1967 0.703488 TCACCCATGCTTGGATCCAA 59.297 50.000 25.53 25.53 46.92 3.53
1891 1968 0.256752 CTCACCCATGCTTGGATCCA 59.743 55.000 19.85 11.44 46.92 3.41
1892 1969 0.548031 TCTCACCCATGCTTGGATCC 59.452 55.000 19.85 4.20 46.92 3.36
1893 1970 1.211457 AGTCTCACCCATGCTTGGATC 59.789 52.381 19.85 3.99 46.92 3.36
1894 1971 1.293062 AGTCTCACCCATGCTTGGAT 58.707 50.000 19.85 0.00 46.92 3.41
1895 1972 1.833630 CTAGTCTCACCCATGCTTGGA 59.166 52.381 19.85 0.00 46.92 3.53
1896 1973 1.745141 GCTAGTCTCACCCATGCTTGG 60.745 57.143 11.68 11.68 43.23 3.61
1897 1974 1.065926 TGCTAGTCTCACCCATGCTTG 60.066 52.381 0.00 0.00 0.00 4.01
1898 1975 1.279496 TGCTAGTCTCACCCATGCTT 58.721 50.000 0.00 0.00 0.00 3.91
1899 1976 1.209019 CTTGCTAGTCTCACCCATGCT 59.791 52.381 0.00 0.00 0.00 3.79
1900 1977 1.065854 ACTTGCTAGTCTCACCCATGC 60.066 52.381 0.00 0.00 0.00 4.06
1901 1978 3.340814 AACTTGCTAGTCTCACCCATG 57.659 47.619 0.07 0.00 31.99 3.66
1902 1979 4.373156 AAAACTTGCTAGTCTCACCCAT 57.627 40.909 0.07 0.00 31.99 4.00
1903 1980 3.857157 AAAACTTGCTAGTCTCACCCA 57.143 42.857 0.07 0.00 31.99 4.51
1904 1981 4.895961 ACTAAAACTTGCTAGTCTCACCC 58.104 43.478 0.07 0.00 31.99 4.61
1905 1982 4.930405 GGACTAAAACTTGCTAGTCTCACC 59.070 45.833 0.07 0.00 42.42 4.02
1906 1983 4.930405 GGGACTAAAACTTGCTAGTCTCAC 59.070 45.833 0.07 0.00 42.76 3.51
1907 1984 5.148651 GGGACTAAAACTTGCTAGTCTCA 57.851 43.478 0.07 0.00 42.76 3.27
1908 1985 4.930405 GTGGGACTAAAACTTGCTAGTCTC 59.070 45.833 0.07 1.39 43.29 3.36
1909 1986 4.593634 AGTGGGACTAAAACTTGCTAGTCT 59.406 41.667 0.07 0.00 42.42 3.24
1910 1987 4.895961 AGTGGGACTAAAACTTGCTAGTC 58.104 43.478 0.07 0.62 42.17 2.59
1911 1988 4.976540 AGTGGGACTAAAACTTGCTAGT 57.023 40.909 0.00 0.00 35.68 2.57
1912 1989 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
1913 1990 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
1914 1991 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
1915 1992 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
1916 1993 8.672823 ACTAAAAGTAGTGGGACTAAAACTTG 57.327 34.615 0.00 0.00 39.20 3.16
1917 1994 8.488668 TGACTAAAAGTAGTGGGACTAAAACTT 58.511 33.333 0.00 0.00 40.82 2.66
1918 1995 8.026396 TGACTAAAAGTAGTGGGACTAAAACT 57.974 34.615 0.00 0.00 40.82 2.66
1919 1996 8.718734 CATGACTAAAAGTAGTGGGACTAAAAC 58.281 37.037 0.00 0.00 40.82 2.43
1920 1997 7.881232 CCATGACTAAAAGTAGTGGGACTAAAA 59.119 37.037 0.00 0.00 40.82 1.52
1921 1998 7.391620 CCATGACTAAAAGTAGTGGGACTAAA 58.608 38.462 0.00 0.00 40.82 1.85
1922 1999 6.942976 CCATGACTAAAAGTAGTGGGACTAA 58.057 40.000 0.00 0.00 40.82 2.24
1923 2000 6.540438 CCATGACTAAAAGTAGTGGGACTA 57.460 41.667 0.00 0.00 40.82 2.59
1924 2001 5.422214 CCATGACTAAAAGTAGTGGGACT 57.578 43.478 0.00 0.00 40.82 3.85
1927 2004 4.514401 GTCCCATGACTAAAAGTAGTGGG 58.486 47.826 17.22 17.22 46.41 4.61
1938 2015 5.657745 TGGATACGTTTTAGTCCCATGACTA 59.342 40.000 0.00 0.00 45.97 2.59
1940 2017 4.761975 TGGATACGTTTTAGTCCCATGAC 58.238 43.478 0.00 0.00 40.25 3.06
1941 2018 5.423704 TTGGATACGTTTTAGTCCCATGA 57.576 39.130 0.00 0.00 42.51 3.07
1942 2019 4.035208 GCTTGGATACGTTTTAGTCCCATG 59.965 45.833 0.00 0.00 42.51 3.66
1943 2020 4.196971 GCTTGGATACGTTTTAGTCCCAT 58.803 43.478 0.00 0.00 42.51 4.00
1944 2021 3.008157 TGCTTGGATACGTTTTAGTCCCA 59.992 43.478 0.00 0.00 42.51 4.37
1945 2022 3.602483 TGCTTGGATACGTTTTAGTCCC 58.398 45.455 0.00 0.00 42.51 4.46
1946 2023 4.495844 GCATGCTTGGATACGTTTTAGTCC 60.496 45.833 11.37 0.00 42.51 3.85
1947 2024 4.332819 AGCATGCTTGGATACGTTTTAGTC 59.667 41.667 16.30 0.00 42.51 2.59
1948 2025 4.261801 AGCATGCTTGGATACGTTTTAGT 58.738 39.130 16.30 0.00 42.51 2.24
1949 2026 4.572389 AGAGCATGCTTGGATACGTTTTAG 59.428 41.667 23.61 0.00 42.51 1.85
1950 2027 4.513442 AGAGCATGCTTGGATACGTTTTA 58.487 39.130 23.61 0.00 42.51 1.52
1951 2028 3.347216 AGAGCATGCTTGGATACGTTTT 58.653 40.909 23.61 0.00 42.51 2.43
1952 2029 2.991250 AGAGCATGCTTGGATACGTTT 58.009 42.857 23.61 0.00 42.51 3.60
1953 2030 2.698855 AGAGCATGCTTGGATACGTT 57.301 45.000 23.61 0.00 42.51 3.99
1954 2031 3.070159 ACATAGAGCATGCTTGGATACGT 59.930 43.478 23.61 8.67 38.29 3.57
1955 2032 3.657634 ACATAGAGCATGCTTGGATACG 58.342 45.455 23.61 8.04 38.29 3.06
1956 2033 6.875726 TGATAACATAGAGCATGCTTGGATAC 59.124 38.462 23.61 7.76 38.29 2.24
1957 2034 7.008021 TGATAACATAGAGCATGCTTGGATA 57.992 36.000 23.61 13.58 38.29 2.59
1958 2035 5.872963 TGATAACATAGAGCATGCTTGGAT 58.127 37.500 23.61 13.46 38.29 3.41
1959 2036 5.294734 TGATAACATAGAGCATGCTTGGA 57.705 39.130 23.61 10.63 38.29 3.53
1960 2037 5.472478 ACATGATAACATAGAGCATGCTTGG 59.528 40.000 23.61 13.77 39.82 3.61
1961 2038 6.204108 TGACATGATAACATAGAGCATGCTTG 59.796 38.462 23.61 18.62 39.82 4.01
1962 2039 6.293698 TGACATGATAACATAGAGCATGCTT 58.706 36.000 23.61 14.05 39.82 3.91
1963 2040 5.861727 TGACATGATAACATAGAGCATGCT 58.138 37.500 22.92 22.92 39.82 3.79
1964 2041 6.738832 ATGACATGATAACATAGAGCATGC 57.261 37.500 10.51 10.51 39.82 4.06
1965 2042 9.595823 TGATATGACATGATAACATAGAGCATG 57.404 33.333 0.00 0.00 41.44 4.06
1966 2043 9.597170 GTGATATGACATGATAACATAGAGCAT 57.403 33.333 0.00 0.00 35.09 3.79
1967 2044 8.587608 TGTGATATGACATGATAACATAGAGCA 58.412 33.333 0.00 2.51 35.09 4.26
1968 2045 8.992835 TGTGATATGACATGATAACATAGAGC 57.007 34.615 0.00 0.31 35.09 4.09
1971 2048 9.322773 GGGATGTGATATGACATGATAACATAG 57.677 37.037 12.84 0.00 36.67 2.23
1972 2049 8.824783 TGGGATGTGATATGACATGATAACATA 58.175 33.333 12.84 4.61 36.67 2.29
1973 2050 7.692172 TGGGATGTGATATGACATGATAACAT 58.308 34.615 12.84 0.00 36.67 2.71
1974 2051 7.077050 TGGGATGTGATATGACATGATAACA 57.923 36.000 12.84 1.98 36.67 2.41
1975 2052 7.984422 TTGGGATGTGATATGACATGATAAC 57.016 36.000 12.84 0.00 36.67 1.89
2057 2138 8.115490 AGTGTAAGCTCAAGATTGCTAAATTT 57.885 30.769 0.00 0.00 38.75 1.82
2073 2154 8.769359 ACCTAGTTAATATGGAAAGTGTAAGCT 58.231 33.333 0.00 0.00 0.00 3.74
2176 2257 4.647399 TGGTGTACCCTCAAAAGGAAAAAG 59.353 41.667 0.00 0.00 46.67 2.27
2246 2327 5.316987 AGTAGAAAGTGCAAGTGCCTAAAT 58.683 37.500 0.00 0.00 41.18 1.40
2267 2348 7.573843 GCACAAGCAATTAATTGAGACTGTAGT 60.574 37.037 28.33 13.74 40.14 2.73
2279 2360 4.397417 GGAGTCTCAGCACAAGCAATTAAT 59.603 41.667 1.47 0.00 45.49 1.40
2331 2412 3.264193 AGATGGCCAAGACACAGTGATTA 59.736 43.478 10.96 0.00 0.00 1.75
2696 2893 9.573133 GTGCAGTGCTTGTTAGAATAAAAATAT 57.427 29.630 17.60 0.00 0.00 1.28
3412 3609 1.959085 CCAACCAAGCGCATCACTT 59.041 52.632 11.47 0.00 0.00 3.16
3525 3722 4.594123 TTCGTCATCACCAAGTTGTCTA 57.406 40.909 1.45 0.00 0.00 2.59
3705 3902 2.254651 GCAGCTTGCAGCACAGAC 59.745 61.111 0.00 0.00 45.56 3.51
3891 4088 5.643664 TGCAAATCTTGAGGAAATTCGATG 58.356 37.500 0.00 0.00 0.00 3.84
3903 4100 4.012374 GGACTTCCATCTGCAAATCTTGA 58.988 43.478 0.00 0.00 35.64 3.02
3948 4145 1.321474 CAGTTGTGAGCACATTGGGT 58.679 50.000 3.90 0.00 41.52 4.51
4127 4324 2.180017 CTGCATTGCCCGTGCTTC 59.820 61.111 6.12 0.00 42.92 3.86
4224 4421 2.610479 CCAGCTACTTGACGCTTCAGAA 60.610 50.000 0.00 0.00 33.45 3.02
4608 4826 7.734865 TCATGGGTAGTGTCTCCAGATAAATAT 59.265 37.037 0.00 0.00 33.68 1.28
4639 4857 7.867445 ACATTTGGTTCATACGAAATTTGAC 57.133 32.000 0.00 0.00 39.66 3.18
4801 5019 5.262588 AGGTTTCAGTTCAAATTCCACAC 57.737 39.130 0.00 0.00 0.00 3.82
4811 5029 4.597507 AGTCCCAGATAAGGTTTCAGTTCA 59.402 41.667 0.00 0.00 0.00 3.18
4904 5129 3.055675 AGCATTCATTCACATGTTTGGGG 60.056 43.478 0.00 0.00 0.00 4.96
4905 5130 4.196626 AGCATTCATTCACATGTTTGGG 57.803 40.909 0.00 0.00 0.00 4.12
4906 5131 6.392354 AGTTAGCATTCATTCACATGTTTGG 58.608 36.000 0.00 0.00 0.00 3.28
4907 5132 7.878477 AAGTTAGCATTCATTCACATGTTTG 57.122 32.000 0.00 0.00 0.00 2.93
4988 5226 7.537306 ACAACAATGTTACGATGCTACATTTTC 59.463 33.333 0.00 0.00 39.70 2.29
5041 5286 9.503399 TGTATCAGATCGTATATGAGTAACAGT 57.497 33.333 0.41 0.00 33.53 3.55
5077 5322 2.886523 TGCCTGTTGTCCTGAAATTCAG 59.113 45.455 15.64 15.64 43.91 3.02
5239 5486 5.030147 TCCTTGCAGGTTCTAGAGGATTAA 58.970 41.667 0.00 0.00 36.53 1.40
5468 5722 0.179034 ATAGCAGCAGCAGGTAAGGC 60.179 55.000 3.17 0.00 45.49 4.35
5500 5754 3.954200 ACACAGCACATCAATCCACATA 58.046 40.909 0.00 0.00 0.00 2.29
5533 5787 3.522987 CAAAATTGCCGTCGCGCG 61.523 61.111 26.76 26.76 38.08 6.86
5594 5848 7.334421 GTGCATTCTCCACCGTATATATTCATT 59.666 37.037 0.00 0.00 0.00 2.57
5638 5892 1.606737 GGGGCATCTCGTGATCTTAGC 60.607 57.143 0.00 0.00 0.00 3.09
5680 6027 2.113774 CTTGCAGTGGTCCTGGCA 59.886 61.111 0.00 0.00 41.81 4.92
5712 6059 4.689983 GCTTTCTGCTCTATTTATGGGGGT 60.690 45.833 0.00 0.00 38.95 4.95
5786 6135 7.876068 TCTCAAGTTCGTTCATAAATAACACCT 59.124 33.333 0.00 0.00 0.00 4.00
5788 6137 9.478019 CATCTCAAGTTCGTTCATAAATAACAC 57.522 33.333 0.00 0.00 0.00 3.32
5799 6177 1.808411 TGGGCATCTCAAGTTCGTTC 58.192 50.000 0.00 0.00 0.00 3.95
5807 6185 2.458620 TGCAATCAATGGGCATCTCAA 58.541 42.857 0.00 0.00 31.58 3.02
5813 6191 2.404923 CCAATTGCAATCAATGGGCA 57.595 45.000 17.53 0.00 44.46 5.36
5883 6280 4.925054 CCAGTTATGTGGATGCAAAAACTG 59.075 41.667 21.03 21.03 40.44 3.16
5919 6316 8.579850 TGAGGCTACTTTTGAATTCATGTATT 57.420 30.769 9.40 0.00 0.00 1.89
5949 6346 4.503714 TTAGGGAGTTTGGCTATTGAGG 57.496 45.455 0.00 0.00 0.00 3.86
5950 6347 6.122277 TGATTTAGGGAGTTTGGCTATTGAG 58.878 40.000 0.00 0.00 0.00 3.02
5951 6348 6.073447 TGATTTAGGGAGTTTGGCTATTGA 57.927 37.500 0.00 0.00 0.00 2.57
5952 6349 6.773976 TTGATTTAGGGAGTTTGGCTATTG 57.226 37.500 0.00 0.00 0.00 1.90
5953 6350 7.619302 TGAATTGATTTAGGGAGTTTGGCTATT 59.381 33.333 0.00 0.00 0.00 1.73
5954 6351 7.125391 TGAATTGATTTAGGGAGTTTGGCTAT 58.875 34.615 0.00 0.00 0.00 2.97
5955 6352 6.489603 TGAATTGATTTAGGGAGTTTGGCTA 58.510 36.000 0.00 0.00 0.00 3.93
6061 6463 9.845740 TTTTTATGCACTAGATTTAGCCATCTA 57.154 29.630 0.00 0.00 35.08 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.