Multiple sequence alignment - TraesCS2A01G339000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G339000 chr2A 100.000 3650 0 0 1 3650 572810426 572814075 0.000000e+00 6741
1 TraesCS2A01G339000 chr2B 91.497 3152 196 34 362 3471 489004800 489001679 0.000000e+00 4270
2 TraesCS2A01G339000 chr2B 93.785 177 4 2 3474 3650 489001588 489001419 3.620000e-65 259
3 TraesCS2A01G339000 chr2D 92.901 2592 135 22 1088 3650 417092427 417089856 0.000000e+00 3722
4 TraesCS2A01G339000 chr7A 98.347 363 6 0 1 363 186509278 186508916 3.970000e-179 638
5 TraesCS2A01G339000 chr6D 97.574 371 9 0 1 371 47205364 47204994 1.430000e-178 636
6 TraesCS2A01G339000 chr6D 98.082 365 7 0 1 365 135073142 135073506 1.430000e-178 636
7 TraesCS2A01G339000 chr5A 98.082 365 7 0 1 365 119256659 119256295 1.430000e-178 636
8 TraesCS2A01G339000 chr5A 98.082 365 7 0 1 365 470140094 470140458 1.430000e-178 636
9 TraesCS2A01G339000 chr5A 98.082 365 7 0 1 365 650806778 650807142 1.430000e-178 636
10 TraesCS2A01G339000 chr5A 98.066 362 7 0 1 362 470146864 470147225 6.650000e-177 630
11 TraesCS2A01G339000 chr3A 98.082 365 7 0 1 365 573783006 573782642 1.430000e-178 636
12 TraesCS2A01G339000 chr3A 98.082 365 7 0 1 365 644856688 644857052 1.430000e-178 636


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G339000 chr2A 572810426 572814075 3649 False 6741.0 6741 100.000 1 3650 1 chr2A.!!$F1 3649
1 TraesCS2A01G339000 chr2B 489001419 489004800 3381 True 2264.5 4270 92.641 362 3650 2 chr2B.!!$R1 3288
2 TraesCS2A01G339000 chr2D 417089856 417092427 2571 True 3722.0 3722 92.901 1088 3650 1 chr2D.!!$R1 2562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 692 0.671796 TATGATTCGACGACCCGCAT 59.328 50.0 0.0 1.8 0.00 4.73 F
1231 1258 0.455633 CTTCGTTACCGTCCTCCGTG 60.456 60.0 0.0 0.0 35.01 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2052 0.247301 CGCTCAAGAAACGATTCGCC 60.247 55.0 5.86 0.0 40.63 5.54 R
2826 2860 0.380378 TTCTTGCAGGAACACGCAAC 59.620 50.0 7.24 0.0 42.93 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.845781 ACGGGAGTTGCATAATCTCAT 57.154 42.857 0.00 0.00 43.33 2.90
22 23 4.955811 ACGGGAGTTGCATAATCTCATA 57.044 40.909 0.00 0.00 43.33 2.15
23 24 4.887748 ACGGGAGTTGCATAATCTCATAG 58.112 43.478 0.00 0.00 43.33 2.23
24 25 4.345257 ACGGGAGTTGCATAATCTCATAGT 59.655 41.667 0.00 0.00 43.33 2.12
25 26 4.926238 CGGGAGTTGCATAATCTCATAGTC 59.074 45.833 0.00 0.00 0.00 2.59
26 27 5.509670 CGGGAGTTGCATAATCTCATAGTCA 60.510 44.000 0.00 0.00 0.00 3.41
27 28 6.471146 GGGAGTTGCATAATCTCATAGTCAT 58.529 40.000 0.00 0.00 0.00 3.06
28 29 7.577616 CGGGAGTTGCATAATCTCATAGTCATA 60.578 40.741 0.00 0.00 0.00 2.15
29 30 7.763528 GGGAGTTGCATAATCTCATAGTCATAG 59.236 40.741 0.00 0.00 0.00 2.23
30 31 7.763528 GGAGTTGCATAATCTCATAGTCATAGG 59.236 40.741 0.00 0.00 0.00 2.57
31 32 8.427902 AGTTGCATAATCTCATAGTCATAGGA 57.572 34.615 0.00 0.00 0.00 2.94
32 33 8.874156 AGTTGCATAATCTCATAGTCATAGGAA 58.126 33.333 0.00 0.00 0.00 3.36
33 34 8.930760 GTTGCATAATCTCATAGTCATAGGAAC 58.069 37.037 0.00 0.00 0.00 3.62
34 35 8.193953 TGCATAATCTCATAGTCATAGGAACA 57.806 34.615 0.00 0.00 0.00 3.18
35 36 8.819845 TGCATAATCTCATAGTCATAGGAACAT 58.180 33.333 0.00 0.00 0.00 2.71
36 37 9.096160 GCATAATCTCATAGTCATAGGAACATG 57.904 37.037 0.00 0.00 0.00 3.21
48 49 9.147732 AGTCATAGGAACATGTATAAGTCATGA 57.852 33.333 0.00 0.00 43.47 3.07
49 50 9.764363 GTCATAGGAACATGTATAAGTCATGAA 57.236 33.333 0.00 0.00 43.47 2.57
50 51 9.987272 TCATAGGAACATGTATAAGTCATGAAG 57.013 33.333 0.00 0.00 43.47 3.02
51 52 9.987272 CATAGGAACATGTATAAGTCATGAAGA 57.013 33.333 0.00 0.00 43.47 2.87
54 55 9.388506 AGGAACATGTATAAGTCATGAAGAAAG 57.611 33.333 0.00 0.00 43.47 2.62
55 56 8.125448 GGAACATGTATAAGTCATGAAGAAAGC 58.875 37.037 0.00 0.00 43.47 3.51
56 57 8.565896 AACATGTATAAGTCATGAAGAAAGCA 57.434 30.769 0.00 0.00 43.47 3.91
57 58 8.565896 ACATGTATAAGTCATGAAGAAAGCAA 57.434 30.769 11.92 0.00 43.47 3.91
58 59 9.182214 ACATGTATAAGTCATGAAGAAAGCAAT 57.818 29.630 11.92 0.00 43.47 3.56
61 62 8.830580 TGTATAAGTCATGAAGAAAGCAATAGC 58.169 33.333 0.00 0.00 42.56 2.97
62 63 7.870509 ATAAGTCATGAAGAAAGCAATAGCA 57.129 32.000 0.00 0.00 45.49 3.49
63 64 6.579666 AAGTCATGAAGAAAGCAATAGCAA 57.420 33.333 0.00 0.00 45.49 3.91
64 65 5.947443 AGTCATGAAGAAAGCAATAGCAAC 58.053 37.500 0.00 0.00 45.49 4.17
65 66 5.474532 AGTCATGAAGAAAGCAATAGCAACA 59.525 36.000 0.00 0.00 45.49 3.33
66 67 6.016024 AGTCATGAAGAAAGCAATAGCAACAA 60.016 34.615 0.00 0.00 45.49 2.83
67 68 6.642131 GTCATGAAGAAAGCAATAGCAACAAA 59.358 34.615 0.00 0.00 45.49 2.83
68 69 6.642131 TCATGAAGAAAGCAATAGCAACAAAC 59.358 34.615 0.00 0.00 45.49 2.93
69 70 6.147864 TGAAGAAAGCAATAGCAACAAACT 57.852 33.333 0.00 0.00 45.49 2.66
70 71 7.270757 TGAAGAAAGCAATAGCAACAAACTA 57.729 32.000 0.00 0.00 45.49 2.24
71 72 7.711846 TGAAGAAAGCAATAGCAACAAACTAA 58.288 30.769 0.00 0.00 45.49 2.24
72 73 8.194104 TGAAGAAAGCAATAGCAACAAACTAAA 58.806 29.630 0.00 0.00 45.49 1.85
73 74 7.930513 AGAAAGCAATAGCAACAAACTAAAC 57.069 32.000 0.00 0.00 45.49 2.01
74 75 6.636850 AGAAAGCAATAGCAACAAACTAAACG 59.363 34.615 0.00 0.00 45.49 3.60
75 76 5.682943 AGCAATAGCAACAAACTAAACGA 57.317 34.783 0.00 0.00 45.49 3.85
76 77 6.254281 AGCAATAGCAACAAACTAAACGAT 57.746 33.333 0.00 0.00 45.49 3.73
77 78 6.314784 AGCAATAGCAACAAACTAAACGATC 58.685 36.000 0.00 0.00 45.49 3.69
78 79 6.072728 AGCAATAGCAACAAACTAAACGATCA 60.073 34.615 0.00 0.00 45.49 2.92
79 80 6.580791 GCAATAGCAACAAACTAAACGATCAA 59.419 34.615 0.00 0.00 41.58 2.57
80 81 7.201266 GCAATAGCAACAAACTAAACGATCAAG 60.201 37.037 0.00 0.00 41.58 3.02
81 82 5.751243 AGCAACAAACTAAACGATCAAGT 57.249 34.783 0.00 0.00 0.00 3.16
82 83 5.510671 AGCAACAAACTAAACGATCAAGTG 58.489 37.500 0.00 0.00 0.00 3.16
83 84 4.146443 GCAACAAACTAAACGATCAAGTGC 59.854 41.667 0.00 0.00 0.00 4.40
84 85 5.510671 CAACAAACTAAACGATCAAGTGCT 58.489 37.500 0.00 0.00 0.00 4.40
85 86 6.655062 CAACAAACTAAACGATCAAGTGCTA 58.345 36.000 0.00 0.00 0.00 3.49
86 87 6.854496 ACAAACTAAACGATCAAGTGCTAA 57.146 33.333 0.00 0.00 0.00 3.09
87 88 6.888430 ACAAACTAAACGATCAAGTGCTAAG 58.112 36.000 0.00 0.00 0.00 2.18
88 89 5.532025 AACTAAACGATCAAGTGCTAAGC 57.468 39.130 0.00 0.00 0.00 3.09
89 90 4.822026 ACTAAACGATCAAGTGCTAAGCT 58.178 39.130 0.00 0.00 0.00 3.74
90 91 5.962433 ACTAAACGATCAAGTGCTAAGCTA 58.038 37.500 0.00 0.00 0.00 3.32
91 92 6.395629 ACTAAACGATCAAGTGCTAAGCTAA 58.604 36.000 0.00 0.00 0.00 3.09
92 93 5.532025 AAACGATCAAGTGCTAAGCTAAC 57.468 39.130 0.00 0.00 0.00 2.34
93 94 3.179830 ACGATCAAGTGCTAAGCTAACG 58.820 45.455 0.00 0.00 0.00 3.18
94 95 2.535984 CGATCAAGTGCTAAGCTAACGG 59.464 50.000 0.00 0.00 0.00 4.44
95 96 3.733988 CGATCAAGTGCTAAGCTAACGGA 60.734 47.826 0.00 0.00 0.00 4.69
96 97 3.671008 TCAAGTGCTAAGCTAACGGAA 57.329 42.857 0.00 0.00 0.00 4.30
97 98 4.202245 TCAAGTGCTAAGCTAACGGAAT 57.798 40.909 0.00 0.00 0.00 3.01
98 99 3.932710 TCAAGTGCTAAGCTAACGGAATG 59.067 43.478 0.00 0.00 0.00 2.67
99 100 2.906354 AGTGCTAAGCTAACGGAATGG 58.094 47.619 0.00 0.00 0.00 3.16
100 101 1.940613 GTGCTAAGCTAACGGAATGGG 59.059 52.381 0.00 0.00 0.00 4.00
101 102 1.557832 TGCTAAGCTAACGGAATGGGT 59.442 47.619 0.00 0.00 0.00 4.51
102 103 2.210961 GCTAAGCTAACGGAATGGGTC 58.789 52.381 0.00 0.00 0.00 4.46
103 104 2.419574 GCTAAGCTAACGGAATGGGTCA 60.420 50.000 0.00 0.00 0.00 4.02
104 105 2.871096 AAGCTAACGGAATGGGTCAA 57.129 45.000 0.00 0.00 0.00 3.18
105 106 2.403252 AGCTAACGGAATGGGTCAAG 57.597 50.000 0.00 0.00 0.00 3.02
106 107 1.628846 AGCTAACGGAATGGGTCAAGT 59.371 47.619 0.00 0.00 0.00 3.16
107 108 2.007608 GCTAACGGAATGGGTCAAGTC 58.992 52.381 0.00 0.00 0.00 3.01
108 109 2.614481 GCTAACGGAATGGGTCAAGTCA 60.614 50.000 0.00 0.00 0.00 3.41
109 110 2.649531 AACGGAATGGGTCAAGTCAA 57.350 45.000 0.00 0.00 0.00 3.18
110 111 2.879103 ACGGAATGGGTCAAGTCAAT 57.121 45.000 0.00 0.00 0.00 2.57
111 112 2.711542 ACGGAATGGGTCAAGTCAATC 58.288 47.619 0.00 0.00 0.00 2.67
112 113 2.039746 ACGGAATGGGTCAAGTCAATCA 59.960 45.455 0.00 0.00 0.00 2.57
113 114 2.420022 CGGAATGGGTCAAGTCAATCAC 59.580 50.000 0.00 0.00 0.00 3.06
114 115 3.420893 GGAATGGGTCAAGTCAATCACA 58.579 45.455 0.00 0.00 0.00 3.58
115 116 4.019174 GGAATGGGTCAAGTCAATCACAT 58.981 43.478 0.00 0.00 0.00 3.21
116 117 4.096984 GGAATGGGTCAAGTCAATCACATC 59.903 45.833 0.00 0.00 0.00 3.06
117 118 3.786368 TGGGTCAAGTCAATCACATCA 57.214 42.857 0.00 0.00 0.00 3.07
118 119 4.305539 TGGGTCAAGTCAATCACATCAT 57.694 40.909 0.00 0.00 0.00 2.45
119 120 4.665451 TGGGTCAAGTCAATCACATCATT 58.335 39.130 0.00 0.00 0.00 2.57
120 121 4.701651 TGGGTCAAGTCAATCACATCATTC 59.298 41.667 0.00 0.00 0.00 2.67
121 122 4.946157 GGGTCAAGTCAATCACATCATTCT 59.054 41.667 0.00 0.00 0.00 2.40
122 123 5.065731 GGGTCAAGTCAATCACATCATTCTC 59.934 44.000 0.00 0.00 0.00 2.87
123 124 5.065731 GGTCAAGTCAATCACATCATTCTCC 59.934 44.000 0.00 0.00 0.00 3.71
124 125 5.879223 GTCAAGTCAATCACATCATTCTCCT 59.121 40.000 0.00 0.00 0.00 3.69
125 126 7.044181 GTCAAGTCAATCACATCATTCTCCTA 58.956 38.462 0.00 0.00 0.00 2.94
126 127 7.550551 GTCAAGTCAATCACATCATTCTCCTAA 59.449 37.037 0.00 0.00 0.00 2.69
127 128 8.270030 TCAAGTCAATCACATCATTCTCCTAAT 58.730 33.333 0.00 0.00 0.00 1.73
128 129 8.343366 CAAGTCAATCACATCATTCTCCTAATG 58.657 37.037 0.00 0.00 0.00 1.90
129 130 7.799081 AGTCAATCACATCATTCTCCTAATGA 58.201 34.615 3.13 3.13 40.50 2.57
130 131 8.438373 AGTCAATCACATCATTCTCCTAATGAT 58.562 33.333 7.28 7.28 45.40 2.45
138 139 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
139 140 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
140 141 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
141 142 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
142 143 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
143 144 5.600898 TCTCCTAATGATGTGATCCCGTTAA 59.399 40.000 0.00 0.00 0.00 2.01
144 145 6.270000 TCTCCTAATGATGTGATCCCGTTAAT 59.730 38.462 0.00 0.00 0.00 1.40
145 146 6.464222 TCCTAATGATGTGATCCCGTTAATC 58.536 40.000 0.00 0.00 0.00 1.75
146 147 6.042666 TCCTAATGATGTGATCCCGTTAATCA 59.957 38.462 0.00 0.00 0.00 2.57
147 148 6.710295 CCTAATGATGTGATCCCGTTAATCAA 59.290 38.462 0.00 0.00 35.04 2.57
148 149 7.228507 CCTAATGATGTGATCCCGTTAATCAAA 59.771 37.037 0.00 0.00 35.04 2.69
149 150 7.587037 AATGATGTGATCCCGTTAATCAAAT 57.413 32.000 0.00 0.00 34.46 2.32
150 151 6.375945 TGATGTGATCCCGTTAATCAAATG 57.624 37.500 0.00 0.00 32.39 2.32
151 152 6.118852 TGATGTGATCCCGTTAATCAAATGA 58.881 36.000 0.00 0.00 32.39 2.57
152 153 5.811399 TGTGATCCCGTTAATCAAATGAC 57.189 39.130 0.00 0.00 35.04 3.06
153 154 5.249420 TGTGATCCCGTTAATCAAATGACA 58.751 37.500 0.00 0.00 35.04 3.58
154 155 5.707764 TGTGATCCCGTTAATCAAATGACAA 59.292 36.000 0.00 0.00 35.04 3.18
155 156 6.027749 GTGATCCCGTTAATCAAATGACAAC 58.972 40.000 0.00 0.00 35.04 3.32
156 157 5.943416 TGATCCCGTTAATCAAATGACAACT 59.057 36.000 0.00 0.00 30.37 3.16
157 158 5.873179 TCCCGTTAATCAAATGACAACTC 57.127 39.130 7.65 0.00 0.00 3.01
158 159 5.309638 TCCCGTTAATCAAATGACAACTCA 58.690 37.500 7.65 0.00 0.00 3.41
159 160 5.943416 TCCCGTTAATCAAATGACAACTCAT 59.057 36.000 7.65 0.00 38.94 2.90
160 161 6.029607 CCCGTTAATCAAATGACAACTCATG 58.970 40.000 7.65 0.00 37.20 3.07
174 175 6.620877 ACAACTCATGTCTATGGTTAGGAA 57.379 37.500 0.00 0.00 37.96 3.36
175 176 7.016153 ACAACTCATGTCTATGGTTAGGAAA 57.984 36.000 0.00 0.00 37.96 3.13
176 177 6.879458 ACAACTCATGTCTATGGTTAGGAAAC 59.121 38.462 0.00 0.00 37.96 2.78
177 178 6.620877 ACTCATGTCTATGGTTAGGAAACA 57.379 37.500 0.00 0.00 37.34 2.83
178 179 7.200434 ACTCATGTCTATGGTTAGGAAACAT 57.800 36.000 0.00 0.00 37.34 2.71
179 180 8.319057 ACTCATGTCTATGGTTAGGAAACATA 57.681 34.615 0.00 0.00 37.34 2.29
180 181 8.768397 ACTCATGTCTATGGTTAGGAAACATAA 58.232 33.333 0.00 0.00 37.34 1.90
181 182 8.958119 TCATGTCTATGGTTAGGAAACATAAC 57.042 34.615 0.00 0.00 37.34 1.89
196 197 8.458843 AGGAAACATAACCATCTTTAATCAACG 58.541 33.333 0.00 0.00 0.00 4.10
197 198 8.455682 GGAAACATAACCATCTTTAATCAACGA 58.544 33.333 0.00 0.00 0.00 3.85
198 199 9.490663 GAAACATAACCATCTTTAATCAACGAG 57.509 33.333 0.00 0.00 0.00 4.18
199 200 7.016361 ACATAACCATCTTTAATCAACGAGC 57.984 36.000 0.00 0.00 0.00 5.03
200 201 6.823689 ACATAACCATCTTTAATCAACGAGCT 59.176 34.615 0.00 0.00 0.00 4.09
201 202 7.985184 ACATAACCATCTTTAATCAACGAGCTA 59.015 33.333 0.00 0.00 0.00 3.32
202 203 6.910536 AACCATCTTTAATCAACGAGCTAG 57.089 37.500 0.00 0.00 0.00 3.42
203 204 5.978814 ACCATCTTTAATCAACGAGCTAGT 58.021 37.500 0.00 0.00 0.00 2.57
204 205 6.043411 ACCATCTTTAATCAACGAGCTAGTC 58.957 40.000 0.00 0.00 0.00 2.59
205 206 6.042777 CCATCTTTAATCAACGAGCTAGTCA 58.957 40.000 0.00 0.00 0.00 3.41
206 207 6.535150 CCATCTTTAATCAACGAGCTAGTCAA 59.465 38.462 0.00 0.00 0.00 3.18
207 208 7.254252 CCATCTTTAATCAACGAGCTAGTCAAG 60.254 40.741 0.00 0.00 0.00 3.02
208 209 6.688578 TCTTTAATCAACGAGCTAGTCAAGT 58.311 36.000 0.00 0.00 0.00 3.16
209 210 7.823665 TCTTTAATCAACGAGCTAGTCAAGTA 58.176 34.615 0.00 0.00 0.00 2.24
210 211 7.968956 TCTTTAATCAACGAGCTAGTCAAGTAG 59.031 37.037 0.00 0.00 0.00 2.57
211 212 5.899120 AATCAACGAGCTAGTCAAGTAGA 57.101 39.130 0.00 0.00 0.00 2.59
212 213 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
213 214 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
214 215 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
215 216 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
216 217 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
217 218 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
218 219 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
219 220 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
220 221 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
221 222 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
222 223 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
223 224 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
224 225 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
225 226 6.369629 AGTCAAGTAGAGGCATACTAGTGAT 58.630 40.000 5.39 0.00 34.90 3.06
226 227 7.519057 AGTCAAGTAGAGGCATACTAGTGATA 58.481 38.462 5.39 0.00 34.90 2.15
227 228 7.446013 AGTCAAGTAGAGGCATACTAGTGATAC 59.554 40.741 5.39 0.00 34.90 2.24
228 229 7.446013 GTCAAGTAGAGGCATACTAGTGATACT 59.554 40.741 5.39 0.00 34.90 2.12
229 230 7.662258 TCAAGTAGAGGCATACTAGTGATACTC 59.338 40.741 5.39 8.31 34.90 2.59
230 231 7.324388 AGTAGAGGCATACTAGTGATACTCT 57.676 40.000 19.15 19.15 34.21 3.24
231 232 7.165485 AGTAGAGGCATACTAGTGATACTCTG 58.835 42.308 21.92 6.02 34.21 3.35
232 233 5.947663 AGAGGCATACTAGTGATACTCTGT 58.052 41.667 16.30 0.93 33.23 3.41
233 234 6.369629 AGAGGCATACTAGTGATACTCTGTT 58.630 40.000 16.30 0.19 33.23 3.16
234 235 6.836527 AGAGGCATACTAGTGATACTCTGTTT 59.163 38.462 16.30 0.00 33.23 2.83
235 236 6.810911 AGGCATACTAGTGATACTCTGTTTG 58.189 40.000 5.39 0.00 0.00 2.93
236 237 6.381420 AGGCATACTAGTGATACTCTGTTTGT 59.619 38.462 5.39 0.00 0.00 2.83
237 238 7.042335 GGCATACTAGTGATACTCTGTTTGTT 58.958 38.462 5.39 0.00 0.00 2.83
238 239 7.549488 GGCATACTAGTGATACTCTGTTTGTTT 59.451 37.037 5.39 0.00 0.00 2.83
239 240 9.582431 GCATACTAGTGATACTCTGTTTGTTTA 57.418 33.333 5.39 0.00 0.00 2.01
267 268 6.429791 TTCACACATGTATTATGTTTCCGG 57.570 37.500 0.00 0.00 0.00 5.14
268 269 5.492895 TCACACATGTATTATGTTTCCGGT 58.507 37.500 0.00 0.00 0.00 5.28
269 270 5.941058 TCACACATGTATTATGTTTCCGGTT 59.059 36.000 0.00 0.00 0.00 4.44
270 271 7.104290 TCACACATGTATTATGTTTCCGGTTA 58.896 34.615 0.00 0.00 0.00 2.85
271 272 7.606839 TCACACATGTATTATGTTTCCGGTTAA 59.393 33.333 0.00 0.00 0.00 2.01
272 273 8.402472 CACACATGTATTATGTTTCCGGTTAAT 58.598 33.333 0.00 1.95 0.00 1.40
273 274 9.616156 ACACATGTATTATGTTTCCGGTTAATA 57.384 29.630 0.00 0.00 0.00 0.98
274 275 9.872757 CACATGTATTATGTTTCCGGTTAATAC 57.127 33.333 0.00 12.47 37.73 1.89
275 276 9.616156 ACATGTATTATGTTTCCGGTTAATACA 57.384 29.630 22.83 22.83 44.85 2.29
283 284 8.920509 ATGTTTCCGGTTAATACAATTTTAGC 57.079 30.769 0.00 0.00 0.00 3.09
284 285 7.883217 TGTTTCCGGTTAATACAATTTTAGCA 58.117 30.769 0.00 0.00 0.00 3.49
285 286 8.524487 TGTTTCCGGTTAATACAATTTTAGCAT 58.476 29.630 0.00 0.00 0.00 3.79
286 287 8.803799 GTTTCCGGTTAATACAATTTTAGCATG 58.196 33.333 0.00 0.00 0.00 4.06
287 288 7.867305 TCCGGTTAATACAATTTTAGCATGA 57.133 32.000 0.00 0.00 0.00 3.07
288 289 8.282455 TCCGGTTAATACAATTTTAGCATGAA 57.718 30.769 0.00 0.00 0.00 2.57
289 290 8.908903 TCCGGTTAATACAATTTTAGCATGAAT 58.091 29.630 0.00 0.00 0.00 2.57
356 357 9.959721 TTATTATTGCCTCTAGGACATATTTCC 57.040 33.333 0.00 0.00 37.39 3.13
358 359 5.975988 TTGCCTCTAGGACATATTTCCTT 57.024 39.130 15.55 1.08 44.22 3.36
359 360 5.552870 TGCCTCTAGGACATATTTCCTTC 57.447 43.478 15.55 2.34 44.22 3.46
360 361 4.968719 TGCCTCTAGGACATATTTCCTTCA 59.031 41.667 15.55 2.56 44.22 3.02
382 383 6.216569 TCATTCTTGATATAGGAACAGTCGC 58.783 40.000 0.00 0.00 0.00 5.19
387 388 2.048444 TATAGGAACAGTCGCCGTCT 57.952 50.000 0.00 0.00 0.00 4.18
392 393 1.135199 GGAACAGTCGCCGTCTTCATA 60.135 52.381 0.00 0.00 0.00 2.15
394 395 1.460504 ACAGTCGCCGTCTTCATAGA 58.539 50.000 0.00 0.00 0.00 1.98
410 411 7.923878 GTCTTCATAGATACTTTTGGTCTCCTC 59.076 40.741 0.00 0.00 31.86 3.71
421 422 2.757508 TCTCCTCGCCTCCTGCTG 60.758 66.667 0.00 0.00 38.05 4.41
448 449 1.758514 GCATCGAGAGGTGGGAGGA 60.759 63.158 0.00 0.00 44.18 3.71
469 470 6.853490 AGGACCTCTGATCTTTAAGGTTTTT 58.147 36.000 9.31 0.00 42.15 1.94
491 492 7.572523 TTTTTGGCATCTATTGGTGATCTAG 57.427 36.000 0.00 0.00 0.00 2.43
540 541 2.430546 TATTTTGCGGTGCCACAAAG 57.569 45.000 0.00 0.00 37.11 2.77
571 572 8.051535 AGAGGTTTGTGTCATCAATGATCTTAT 58.948 33.333 0.00 0.00 39.30 1.73
657 658 9.672086 TTGTGAAGTTAAAATCTTTCCATAACG 57.328 29.630 0.00 0.00 32.99 3.18
687 688 7.811236 TGTAAAGATATTATGATTCGACGACCC 59.189 37.037 0.00 0.00 0.00 4.46
689 690 1.779569 ATTATGATTCGACGACCCGC 58.220 50.000 0.00 0.00 0.00 6.13
691 692 0.671796 TATGATTCGACGACCCGCAT 59.328 50.000 0.00 1.80 0.00 4.73
714 715 7.580302 GCATTTCTAGGATATCATCACTGGCTA 60.580 40.741 4.83 0.00 0.00 3.93
718 719 8.262601 TCTAGGATATCATCACTGGCTAAAAA 57.737 34.615 4.83 0.00 0.00 1.94
737 739 1.191535 AATGCACATGGCTCAATGCT 58.808 45.000 0.00 0.00 45.15 3.79
754 756 3.861276 TGCTTTGCATCTTCTTGGATG 57.139 42.857 0.00 0.00 44.08 3.51
757 759 1.477553 TTGCATCTTCTTGGATGGGC 58.522 50.000 6.60 0.00 42.21 5.36
762 764 2.978156 TCTTCTTGGATGGGCAACTT 57.022 45.000 0.00 0.00 0.00 2.66
849 851 8.770438 TGTTGCTTCAGTCTAATTTTTGTTTT 57.230 26.923 0.00 0.00 0.00 2.43
896 898 7.948034 TTCGTCCTCCAAAAATTAATACCAT 57.052 32.000 0.00 0.00 0.00 3.55
899 901 7.717875 TCGTCCTCCAAAAATTAATACCATAGG 59.282 37.037 0.00 0.00 0.00 2.57
914 916 5.269554 ACCATAGGGAAGATGTTTCCAAA 57.730 39.130 0.00 0.00 40.32 3.28
927 929 7.458397 AGATGTTTCCAAAAGATACCACTGTA 58.542 34.615 0.00 0.00 0.00 2.74
988 990 8.044060 TGATCTTAAAATCCAAAGCAGTGTAG 57.956 34.615 0.00 0.00 0.00 2.74
998 1000 7.670605 TCCAAAGCAGTGTAGGTATAATAGT 57.329 36.000 0.00 0.00 0.00 2.12
999 1001 7.723324 TCCAAAGCAGTGTAGGTATAATAGTC 58.277 38.462 0.00 0.00 0.00 2.59
1002 1029 8.982685 CAAAGCAGTGTAGGTATAATAGTCATG 58.017 37.037 0.00 0.00 0.00 3.07
1004 1031 8.116651 AGCAGTGTAGGTATAATAGTCATGAG 57.883 38.462 0.00 0.00 0.00 2.90
1006 1033 9.011095 GCAGTGTAGGTATAATAGTCATGAGTA 57.989 37.037 12.62 12.62 0.00 2.59
1053 1080 6.834168 ATCTGTTACAGGGGTAAAATTGTG 57.166 37.500 12.79 0.00 40.95 3.33
1075 1102 0.712979 AGATCTCCTCACCCACCTCA 59.287 55.000 0.00 0.00 0.00 3.86
1153 1180 3.891400 CATCACCAATGCGGCCGG 61.891 66.667 29.38 12.50 39.03 6.13
1218 1245 2.971452 GAGGACCTCGCCTTCGTT 59.029 61.111 5.55 0.00 38.73 3.85
1223 1250 2.205243 GACCTCGCCTTCGTTACCGT 62.205 60.000 0.00 0.00 36.96 4.83
1230 1257 1.589716 CCTTCGTTACCGTCCTCCGT 61.590 60.000 0.00 0.00 35.01 4.69
1231 1258 0.455633 CTTCGTTACCGTCCTCCGTG 60.456 60.000 0.00 0.00 35.01 4.94
1245 1272 4.135153 CGTGCCCACCTCTCCTCG 62.135 72.222 0.00 0.00 0.00 4.63
1329 1359 4.150454 CTCCTCCTCTCCCCGCCT 62.150 72.222 0.00 0.00 0.00 5.52
1743 1773 1.300620 GATGCGCCGGTGCTGTATA 60.301 57.895 37.39 20.02 35.36 1.47
1763 1793 1.669760 CGCCCAACATGTACACGGT 60.670 57.895 0.00 0.00 0.00 4.83
1782 1812 3.669344 AACATGGTGTTGCGGGCG 61.669 61.111 0.00 0.00 39.45 6.13
2019 2049 1.225704 CAAGGAGGGGAGGATGCAC 59.774 63.158 0.00 0.00 0.00 4.57
2022 2052 2.750657 GGAGGGGAGGATGCACCAG 61.751 68.421 2.65 0.00 42.04 4.00
2034 2064 1.134694 GCACCAGGCGAATCGTTTC 59.865 57.895 4.07 0.00 0.00 2.78
2051 2081 3.237628 GTTTCTTGAGCGAAATGAAGGC 58.762 45.455 0.00 0.00 35.56 4.35
2577 2607 1.669779 CTGCAGTCAGCTGATAAAGGC 59.330 52.381 21.47 18.16 45.28 4.35
2591 2621 6.183360 GCTGATAAAGGCGGAAAGTTTATTCT 60.183 38.462 0.00 0.00 0.00 2.40
2662 2692 2.412870 CATGTTAACACGCAGAGACCA 58.587 47.619 11.22 0.00 0.00 4.02
2663 2693 2.831685 TGTTAACACGCAGAGACCAT 57.168 45.000 3.59 0.00 0.00 3.55
2664 2694 2.412870 TGTTAACACGCAGAGACCATG 58.587 47.619 3.59 0.00 0.00 3.66
2665 2695 1.732259 GTTAACACGCAGAGACCATGG 59.268 52.381 11.19 11.19 0.00 3.66
2674 2707 0.835941 AGAGACCATGGTGCCTCATC 59.164 55.000 25.52 5.65 0.00 2.92
2684 2717 2.571202 TGGTGCCTCATCAGAATGTACA 59.429 45.455 0.00 0.00 37.40 2.90
2688 2721 5.126061 GGTGCCTCATCAGAATGTACAATTT 59.874 40.000 0.00 0.00 37.40 1.82
2708 2741 9.612066 ACAATTTGTTTGTTTGGAGAACAATAT 57.388 25.926 5.30 0.00 46.51 1.28
2732 2765 4.395625 AGTTAAACCCTTCTGCTTGTACC 58.604 43.478 0.00 0.00 0.00 3.34
2746 2779 3.679502 GCTTGTACCAATGTGGAATTTGC 59.320 43.478 0.18 0.00 40.96 3.68
2747 2780 4.798924 GCTTGTACCAATGTGGAATTTGCA 60.799 41.667 0.18 0.00 40.96 4.08
2765 2798 3.354467 TGCATTGACACATGCCTATGAA 58.646 40.909 15.44 0.00 42.73 2.57
2768 2801 2.760634 TGACACATGCCTATGAACGT 57.239 45.000 0.00 0.00 37.73 3.99
2779 2813 3.500680 GCCTATGAACGTTTCTGTTTGGA 59.499 43.478 0.46 0.00 30.75 3.53
2781 2815 5.335661 GCCTATGAACGTTTCTGTTTGGATT 60.336 40.000 0.46 0.00 30.75 3.01
2784 2818 7.962918 CCTATGAACGTTTCTGTTTGGATTAAG 59.037 37.037 0.46 0.00 30.75 1.85
2790 2824 6.142817 CGTTTCTGTTTGGATTAAGTGAAGG 58.857 40.000 0.00 0.00 0.00 3.46
2802 2836 1.680338 AGTGAAGGCAACCTGACAAC 58.320 50.000 0.00 0.00 32.13 3.32
2826 2860 2.103373 TCTTGCCTGTAGGTAGCTGAG 58.897 52.381 4.27 0.24 37.57 3.35
2831 2865 1.469940 CCTGTAGGTAGCTGAGTTGCG 60.470 57.143 4.27 0.00 38.13 4.85
2833 2867 1.067846 TGTAGGTAGCTGAGTTGCGTG 60.068 52.381 4.27 0.00 38.13 5.34
2834 2868 1.067776 GTAGGTAGCTGAGTTGCGTGT 60.068 52.381 4.27 0.00 38.13 4.49
2840 2874 1.571460 CTGAGTTGCGTGTTCCTGC 59.429 57.895 0.00 0.00 0.00 4.85
2841 2875 1.153269 TGAGTTGCGTGTTCCTGCA 60.153 52.632 0.00 0.00 39.81 4.41
2863 2899 5.124457 GCAAGAAGATGACTAGCAAATGGAA 59.876 40.000 0.00 0.00 0.00 3.53
2877 2913 9.343103 CTAGCAAATGGAATACTACATACTACG 57.657 37.037 0.00 0.00 0.00 3.51
2884 2925 6.038603 TGGAATACTACATACTACGTGTGTCC 59.961 42.308 0.00 0.00 38.68 4.02
2919 2960 8.868522 TGTCAACCAAGAATTCTTCATAATCT 57.131 30.769 17.91 0.00 33.11 2.40
2944 2985 3.009033 TGCTTATGGAGTTACAGGCTTGT 59.991 43.478 6.72 6.72 41.39 3.16
2960 3001 4.044426 GGCTTGTACTTTTCTTGCAACAG 58.956 43.478 0.00 0.00 0.00 3.16
2981 3022 5.301551 ACAGCTTGTGTTATTCCATTGACAA 59.698 36.000 0.00 0.00 34.94 3.18
2982 3023 6.183360 ACAGCTTGTGTTATTCCATTGACAAA 60.183 34.615 0.00 0.00 34.94 2.83
3004 3045 7.173907 ACAAAAGTATCAGATGAAACTCCACTG 59.826 37.037 0.00 0.00 0.00 3.66
3032 3073 5.616488 AATTTGAATTGATTTGTGCTGGC 57.384 34.783 0.00 0.00 0.00 4.85
3087 3132 6.973843 TCAAACATCTTCTTGAAACCATCTG 58.026 36.000 0.00 0.00 0.00 2.90
3088 3133 6.547141 TCAAACATCTTCTTGAAACCATCTGT 59.453 34.615 0.00 0.00 0.00 3.41
3089 3134 6.966534 AACATCTTCTTGAAACCATCTGTT 57.033 33.333 0.00 0.00 39.43 3.16
3090 3135 6.566197 ACATCTTCTTGAAACCATCTGTTC 57.434 37.500 0.00 0.00 35.67 3.18
3092 3137 4.703897 TCTTCTTGAAACCATCTGTTCGT 58.296 39.130 0.00 0.00 35.67 3.85
3093 3138 5.849510 TCTTCTTGAAACCATCTGTTCGTA 58.150 37.500 0.00 0.00 35.67 3.43
3094 3139 6.285224 TCTTCTTGAAACCATCTGTTCGTAA 58.715 36.000 0.00 0.00 35.67 3.18
3095 3140 6.934645 TCTTCTTGAAACCATCTGTTCGTAAT 59.065 34.615 0.00 0.00 35.67 1.89
3096 3141 6.480524 TCTTGAAACCATCTGTTCGTAATG 57.519 37.500 0.00 0.00 35.67 1.90
3101 3158 6.429692 TGAAACCATCTGTTCGTAATGTCAAT 59.570 34.615 0.00 0.00 35.67 2.57
3131 3188 9.710900 AAATTCAGTTTGTATTGGAGGAAAATC 57.289 29.630 0.00 0.00 0.00 2.17
3138 3195 5.569355 TGTATTGGAGGAAAATCTCTGCAA 58.431 37.500 0.00 0.00 43.43 4.08
3154 3211 3.082698 TGCAAGCAAAGCAGTTAACAG 57.917 42.857 8.61 0.17 37.02 3.16
3158 3215 4.794003 GCAAGCAAAGCAGTTAACAGTGAT 60.794 41.667 8.61 0.00 0.00 3.06
3236 3293 6.480763 TCTTTTATATGCCTCTCCACACAAA 58.519 36.000 0.00 0.00 0.00 2.83
3288 3345 8.806146 AGATGTTTGCTGAATTAACAATTACCT 58.194 29.630 0.00 0.00 35.62 3.08
3295 3352 9.474920 TGCTGAATTAACAATTACCTCAAAAAG 57.525 29.630 0.00 0.00 0.00 2.27
3311 3368 5.299148 TCAAAAAGGAAAACCATGATGCAG 58.701 37.500 0.00 0.00 0.00 4.41
3335 3392 8.859090 CAGGAAGAAGACAGATACAATATCTCT 58.141 37.037 0.00 0.00 0.00 3.10
3390 3447 7.492344 TGATGCACAACACACTCAATATAGTAG 59.508 37.037 0.00 0.00 0.00 2.57
3401 3458 8.744652 ACACTCAATATAGTAGTATCTCCATGC 58.255 37.037 0.00 0.00 0.00 4.06
3413 3470 6.529220 AGTATCTCCATGCCAAAGATTAGTC 58.471 40.000 4.23 0.00 32.25 2.59
3417 3474 5.425217 TCTCCATGCCAAAGATTAGTCACTA 59.575 40.000 0.00 0.00 0.00 2.74
3419 3476 6.115446 TCCATGCCAAAGATTAGTCACTAAG 58.885 40.000 3.12 0.00 29.02 2.18
3420 3477 5.882557 CCATGCCAAAGATTAGTCACTAAGT 59.117 40.000 3.12 0.00 29.02 2.24
3421 3478 6.037610 CCATGCCAAAGATTAGTCACTAAGTC 59.962 42.308 3.12 1.83 29.02 3.01
3422 3479 6.109156 TGCCAAAGATTAGTCACTAAGTCA 57.891 37.500 3.12 0.00 29.02 3.41
3423 3480 5.932303 TGCCAAAGATTAGTCACTAAGTCAC 59.068 40.000 3.12 0.00 29.02 3.67
3424 3481 6.166982 GCCAAAGATTAGTCACTAAGTCACT 58.833 40.000 3.12 0.00 29.02 3.41
3425 3482 6.651225 GCCAAAGATTAGTCACTAAGTCACTT 59.349 38.462 3.12 0.00 29.02 3.16
3426 3483 7.817962 GCCAAAGATTAGTCACTAAGTCACTTA 59.182 37.037 3.12 0.00 29.02 2.24
3427 3484 9.141400 CCAAAGATTAGTCACTAAGTCACTTAC 57.859 37.037 3.12 0.00 29.02 2.34
3428 3485 9.692749 CAAAGATTAGTCACTAAGTCACTTACA 57.307 33.333 3.12 0.00 29.02 2.41
3443 3500 9.871238 AAGTCACTTACATATAGTTGTAGTTGG 57.129 33.333 0.00 0.00 33.81 3.77
3489 3634 6.969473 GGAAAATGTTAGTAGCTTTCAGCATC 59.031 38.462 0.00 0.00 45.56 3.91
3541 3686 6.490381 TGGTGATCAGCATAGTACTACCTTAG 59.510 42.308 23.20 0.00 33.39 2.18
3542 3687 6.715718 GGTGATCAGCATAGTACTACCTTAGA 59.284 42.308 19.79 0.88 0.00 2.10
3543 3688 7.230913 GGTGATCAGCATAGTACTACCTTAGAA 59.769 40.741 19.79 0.00 0.00 2.10
3544 3689 8.630917 GTGATCAGCATAGTACTACCTTAGAAA 58.369 37.037 4.31 0.00 0.00 2.52
3545 3690 9.368416 TGATCAGCATAGTACTACCTTAGAAAT 57.632 33.333 4.31 0.00 0.00 2.17
3575 3720 7.501892 TGCCTTCACATGCATAATTCTACATTA 59.498 33.333 0.00 0.00 31.31 1.90
3607 3752 6.179756 TCAGCTTGAGTATATTGGAAGCAAA 58.820 36.000 0.00 0.00 41.24 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.627395 TGAGATTATGCAACTCCCGTT 57.373 42.857 0.00 0.00 0.00 4.44
1 2 3.845781 ATGAGATTATGCAACTCCCGT 57.154 42.857 0.00 0.00 0.00 5.28
2 3 4.887748 ACTATGAGATTATGCAACTCCCG 58.112 43.478 0.00 0.00 0.00 5.14
3 4 5.858381 TGACTATGAGATTATGCAACTCCC 58.142 41.667 0.00 0.00 0.00 4.30
4 5 7.763528 CCTATGACTATGAGATTATGCAACTCC 59.236 40.741 0.00 0.00 0.00 3.85
5 6 8.526978 TCCTATGACTATGAGATTATGCAACTC 58.473 37.037 0.00 0.00 0.00 3.01
6 7 8.427902 TCCTATGACTATGAGATTATGCAACT 57.572 34.615 0.00 0.00 0.00 3.16
7 8 8.930760 GTTCCTATGACTATGAGATTATGCAAC 58.069 37.037 0.00 0.00 0.00 4.17
8 9 8.650490 TGTTCCTATGACTATGAGATTATGCAA 58.350 33.333 0.00 0.00 0.00 4.08
9 10 8.193953 TGTTCCTATGACTATGAGATTATGCA 57.806 34.615 0.00 0.00 0.00 3.96
10 11 9.096160 CATGTTCCTATGACTATGAGATTATGC 57.904 37.037 0.00 0.00 0.00 3.14
22 23 9.147732 TCATGACTTATACATGTTCCTATGACT 57.852 33.333 2.30 0.00 43.56 3.41
23 24 9.764363 TTCATGACTTATACATGTTCCTATGAC 57.236 33.333 2.30 0.00 43.56 3.06
24 25 9.987272 CTTCATGACTTATACATGTTCCTATGA 57.013 33.333 2.30 3.47 43.56 2.15
25 26 9.987272 TCTTCATGACTTATACATGTTCCTATG 57.013 33.333 2.30 1.10 43.56 2.23
28 29 9.388506 CTTTCTTCATGACTTATACATGTTCCT 57.611 33.333 2.30 0.00 43.56 3.36
29 30 8.125448 GCTTTCTTCATGACTTATACATGTTCC 58.875 37.037 2.30 0.00 43.56 3.62
30 31 8.668353 TGCTTTCTTCATGACTTATACATGTTC 58.332 33.333 2.30 0.00 43.56 3.18
31 32 8.565896 TGCTTTCTTCATGACTTATACATGTT 57.434 30.769 2.30 0.00 43.56 2.71
32 33 8.565896 TTGCTTTCTTCATGACTTATACATGT 57.434 30.769 2.69 2.69 43.56 3.21
35 36 8.830580 GCTATTGCTTTCTTCATGACTTATACA 58.169 33.333 0.00 0.00 36.03 2.29
36 37 8.830580 TGCTATTGCTTTCTTCATGACTTATAC 58.169 33.333 0.00 0.00 40.48 1.47
37 38 8.962884 TGCTATTGCTTTCTTCATGACTTATA 57.037 30.769 0.00 0.00 40.48 0.98
38 39 7.870509 TGCTATTGCTTTCTTCATGACTTAT 57.129 32.000 0.00 0.00 40.48 1.73
39 40 7.174772 TGTTGCTATTGCTTTCTTCATGACTTA 59.825 33.333 0.00 0.00 40.48 2.24
40 41 6.016024 TGTTGCTATTGCTTTCTTCATGACTT 60.016 34.615 0.00 0.00 40.48 3.01
41 42 5.474532 TGTTGCTATTGCTTTCTTCATGACT 59.525 36.000 0.00 0.00 40.48 3.41
42 43 5.702865 TGTTGCTATTGCTTTCTTCATGAC 58.297 37.500 0.00 0.00 40.48 3.06
43 44 5.963176 TGTTGCTATTGCTTTCTTCATGA 57.037 34.783 0.00 0.00 40.48 3.07
44 45 6.643770 AGTTTGTTGCTATTGCTTTCTTCATG 59.356 34.615 0.00 0.00 40.48 3.07
45 46 6.752168 AGTTTGTTGCTATTGCTTTCTTCAT 58.248 32.000 0.00 0.00 40.48 2.57
46 47 6.147864 AGTTTGTTGCTATTGCTTTCTTCA 57.852 33.333 0.00 0.00 40.48 3.02
47 48 8.480066 GTTTAGTTTGTTGCTATTGCTTTCTTC 58.520 33.333 0.00 0.00 40.48 2.87
48 49 7.167468 CGTTTAGTTTGTTGCTATTGCTTTCTT 59.833 33.333 0.00 0.00 40.48 2.52
49 50 6.636850 CGTTTAGTTTGTTGCTATTGCTTTCT 59.363 34.615 0.00 0.00 40.48 2.52
50 51 6.635239 TCGTTTAGTTTGTTGCTATTGCTTTC 59.365 34.615 0.00 0.00 40.48 2.62
51 52 6.500041 TCGTTTAGTTTGTTGCTATTGCTTT 58.500 32.000 0.00 0.00 40.48 3.51
52 53 6.067263 TCGTTTAGTTTGTTGCTATTGCTT 57.933 33.333 0.00 0.00 40.48 3.91
53 54 5.682943 TCGTTTAGTTTGTTGCTATTGCT 57.317 34.783 0.00 0.00 40.48 3.91
54 55 6.083630 TGATCGTTTAGTTTGTTGCTATTGC 58.916 36.000 0.00 0.00 40.20 3.56
55 56 7.803189 ACTTGATCGTTTAGTTTGTTGCTATTG 59.197 33.333 0.00 0.00 0.00 1.90
56 57 7.803189 CACTTGATCGTTTAGTTTGTTGCTATT 59.197 33.333 0.00 0.00 0.00 1.73
57 58 7.298122 CACTTGATCGTTTAGTTTGTTGCTAT 58.702 34.615 0.00 0.00 0.00 2.97
58 59 6.655062 CACTTGATCGTTTAGTTTGTTGCTA 58.345 36.000 0.00 0.00 0.00 3.49
59 60 5.510671 CACTTGATCGTTTAGTTTGTTGCT 58.489 37.500 0.00 0.00 0.00 3.91
60 61 4.146443 GCACTTGATCGTTTAGTTTGTTGC 59.854 41.667 0.00 0.00 0.00 4.17
61 62 5.510671 AGCACTTGATCGTTTAGTTTGTTG 58.489 37.500 0.00 0.00 0.00 3.33
62 63 5.751243 AGCACTTGATCGTTTAGTTTGTT 57.249 34.783 0.00 0.00 0.00 2.83
63 64 6.565999 GCTTAGCACTTGATCGTTTAGTTTGT 60.566 38.462 0.00 0.00 0.00 2.83
64 65 5.790495 GCTTAGCACTTGATCGTTTAGTTTG 59.210 40.000 0.00 0.00 0.00 2.93
65 66 5.701290 AGCTTAGCACTTGATCGTTTAGTTT 59.299 36.000 7.07 0.00 0.00 2.66
66 67 5.238583 AGCTTAGCACTTGATCGTTTAGTT 58.761 37.500 7.07 0.00 0.00 2.24
67 68 4.822026 AGCTTAGCACTTGATCGTTTAGT 58.178 39.130 7.07 0.00 0.00 2.24
68 69 6.506513 CGTTAGCTTAGCACTTGATCGTTTAG 60.507 42.308 7.07 0.00 0.00 1.85
69 70 5.287752 CGTTAGCTTAGCACTTGATCGTTTA 59.712 40.000 7.07 0.00 0.00 2.01
70 71 4.091509 CGTTAGCTTAGCACTTGATCGTTT 59.908 41.667 7.07 0.00 0.00 3.60
71 72 3.612860 CGTTAGCTTAGCACTTGATCGTT 59.387 43.478 7.07 0.00 0.00 3.85
72 73 3.179830 CGTTAGCTTAGCACTTGATCGT 58.820 45.455 7.07 0.00 0.00 3.73
73 74 2.535984 CCGTTAGCTTAGCACTTGATCG 59.464 50.000 7.07 1.46 0.00 3.69
74 75 3.782046 TCCGTTAGCTTAGCACTTGATC 58.218 45.455 7.07 0.00 0.00 2.92
75 76 3.887621 TCCGTTAGCTTAGCACTTGAT 57.112 42.857 7.07 0.00 0.00 2.57
76 77 3.671008 TTCCGTTAGCTTAGCACTTGA 57.329 42.857 7.07 0.00 0.00 3.02
77 78 3.063997 CCATTCCGTTAGCTTAGCACTTG 59.936 47.826 7.07 0.00 0.00 3.16
78 79 3.270877 CCATTCCGTTAGCTTAGCACTT 58.729 45.455 7.07 0.00 0.00 3.16
79 80 2.420129 CCCATTCCGTTAGCTTAGCACT 60.420 50.000 7.07 0.00 0.00 4.40
80 81 1.940613 CCCATTCCGTTAGCTTAGCAC 59.059 52.381 7.07 0.00 0.00 4.40
81 82 1.557832 ACCCATTCCGTTAGCTTAGCA 59.442 47.619 7.07 0.00 0.00 3.49
82 83 2.210961 GACCCATTCCGTTAGCTTAGC 58.789 52.381 0.00 0.00 0.00 3.09
83 84 3.536956 TGACCCATTCCGTTAGCTTAG 57.463 47.619 0.00 0.00 0.00 2.18
84 85 3.262405 ACTTGACCCATTCCGTTAGCTTA 59.738 43.478 0.00 0.00 0.00 3.09
85 86 2.039879 ACTTGACCCATTCCGTTAGCTT 59.960 45.455 0.00 0.00 0.00 3.74
86 87 1.628846 ACTTGACCCATTCCGTTAGCT 59.371 47.619 0.00 0.00 0.00 3.32
87 88 2.007608 GACTTGACCCATTCCGTTAGC 58.992 52.381 0.00 0.00 0.00 3.09
88 89 3.328382 TGACTTGACCCATTCCGTTAG 57.672 47.619 0.00 0.00 0.00 2.34
89 90 3.773418 TTGACTTGACCCATTCCGTTA 57.227 42.857 0.00 0.00 0.00 3.18
90 91 2.649531 TTGACTTGACCCATTCCGTT 57.350 45.000 0.00 0.00 0.00 4.44
91 92 2.039746 TGATTGACTTGACCCATTCCGT 59.960 45.455 0.00 0.00 0.00 4.69
92 93 2.420022 GTGATTGACTTGACCCATTCCG 59.580 50.000 0.00 0.00 0.00 4.30
93 94 3.420893 TGTGATTGACTTGACCCATTCC 58.579 45.455 0.00 0.00 0.00 3.01
94 95 4.701651 TGATGTGATTGACTTGACCCATTC 59.298 41.667 0.00 0.00 0.00 2.67
95 96 4.665451 TGATGTGATTGACTTGACCCATT 58.335 39.130 0.00 0.00 0.00 3.16
96 97 4.305539 TGATGTGATTGACTTGACCCAT 57.694 40.909 0.00 0.00 0.00 4.00
97 98 3.786368 TGATGTGATTGACTTGACCCA 57.214 42.857 0.00 0.00 0.00 4.51
98 99 4.946157 AGAATGATGTGATTGACTTGACCC 59.054 41.667 0.00 0.00 0.00 4.46
99 100 5.065731 GGAGAATGATGTGATTGACTTGACC 59.934 44.000 0.00 0.00 0.00 4.02
100 101 5.879223 AGGAGAATGATGTGATTGACTTGAC 59.121 40.000 0.00 0.00 0.00 3.18
101 102 6.058553 AGGAGAATGATGTGATTGACTTGA 57.941 37.500 0.00 0.00 0.00 3.02
102 103 7.854557 TTAGGAGAATGATGTGATTGACTTG 57.145 36.000 0.00 0.00 0.00 3.16
103 104 8.270030 TCATTAGGAGAATGATGTGATTGACTT 58.730 33.333 0.00 0.00 32.21 3.01
104 105 7.799081 TCATTAGGAGAATGATGTGATTGACT 58.201 34.615 0.00 0.00 32.21 3.41
105 106 8.618702 ATCATTAGGAGAATGATGTGATTGAC 57.381 34.615 11.08 0.00 43.52 3.18
114 115 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
115 116 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
116 117 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
117 118 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
118 119 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
119 120 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
120 121 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
121 122 5.880164 TTAACGGGATCACATCATTAGGA 57.120 39.130 0.00 0.00 0.00 2.94
122 123 6.230472 TGATTAACGGGATCACATCATTAGG 58.770 40.000 0.00 0.00 0.00 2.69
123 124 7.728847 TTGATTAACGGGATCACATCATTAG 57.271 36.000 0.00 0.00 33.51 1.73
124 125 8.567104 CATTTGATTAACGGGATCACATCATTA 58.433 33.333 0.00 0.00 33.51 1.90
125 126 7.285172 TCATTTGATTAACGGGATCACATCATT 59.715 33.333 0.00 0.00 33.51 2.57
126 127 6.772233 TCATTTGATTAACGGGATCACATCAT 59.228 34.615 0.00 0.00 33.51 2.45
127 128 6.038161 GTCATTTGATTAACGGGATCACATCA 59.962 38.462 0.00 0.00 33.51 3.07
128 129 6.038161 TGTCATTTGATTAACGGGATCACATC 59.962 38.462 0.00 0.00 33.51 3.06
129 130 5.885352 TGTCATTTGATTAACGGGATCACAT 59.115 36.000 0.00 0.00 33.51 3.21
130 131 5.249420 TGTCATTTGATTAACGGGATCACA 58.751 37.500 0.00 0.00 33.51 3.58
131 132 5.811399 TGTCATTTGATTAACGGGATCAC 57.189 39.130 0.00 0.00 33.51 3.06
132 133 5.943416 AGTTGTCATTTGATTAACGGGATCA 59.057 36.000 0.00 0.00 32.73 2.92
133 134 6.093495 TGAGTTGTCATTTGATTAACGGGATC 59.907 38.462 0.00 0.00 32.73 3.36
134 135 5.943416 TGAGTTGTCATTTGATTAACGGGAT 59.057 36.000 0.00 0.00 32.73 3.85
135 136 5.309638 TGAGTTGTCATTTGATTAACGGGA 58.690 37.500 0.00 0.00 32.73 5.14
136 137 5.621197 TGAGTTGTCATTTGATTAACGGG 57.379 39.130 0.00 0.00 32.73 5.28
137 138 6.611381 ACATGAGTTGTCATTTGATTAACGG 58.389 36.000 0.00 0.00 40.84 4.44
151 152 6.620877 TTCCTAACCATAGACATGAGTTGT 57.379 37.500 0.00 0.00 42.79 3.32
152 153 6.878923 TGTTTCCTAACCATAGACATGAGTTG 59.121 38.462 0.00 0.00 33.15 3.16
153 154 7.016153 TGTTTCCTAACCATAGACATGAGTT 57.984 36.000 0.00 0.00 33.15 3.01
154 155 6.620877 TGTTTCCTAACCATAGACATGAGT 57.379 37.500 0.00 0.00 33.15 3.41
155 156 9.046296 GTTATGTTTCCTAACCATAGACATGAG 57.954 37.037 0.00 0.00 30.80 2.90
156 157 7.990886 GGTTATGTTTCCTAACCATAGACATGA 59.009 37.037 0.00 0.00 44.95 3.07
157 158 8.154649 GGTTATGTTTCCTAACCATAGACATG 57.845 38.462 7.24 0.00 44.95 3.21
170 171 8.458843 CGTTGATTAAAGATGGTTATGTTTCCT 58.541 33.333 0.00 0.00 32.64 3.36
171 172 8.455682 TCGTTGATTAAAGATGGTTATGTTTCC 58.544 33.333 0.00 0.00 32.64 3.13
172 173 9.490663 CTCGTTGATTAAAGATGGTTATGTTTC 57.509 33.333 0.00 0.00 32.64 2.78
173 174 7.968405 GCTCGTTGATTAAAGATGGTTATGTTT 59.032 33.333 0.00 0.00 34.54 2.83
174 175 7.336931 AGCTCGTTGATTAAAGATGGTTATGTT 59.663 33.333 0.00 0.00 0.00 2.71
175 176 6.823689 AGCTCGTTGATTAAAGATGGTTATGT 59.176 34.615 0.00 0.00 0.00 2.29
176 177 7.251704 AGCTCGTTGATTAAAGATGGTTATG 57.748 36.000 0.00 0.00 0.00 1.90
177 178 8.204836 ACTAGCTCGTTGATTAAAGATGGTTAT 58.795 33.333 0.00 0.00 0.00 1.89
178 179 7.553334 ACTAGCTCGTTGATTAAAGATGGTTA 58.447 34.615 0.00 0.00 0.00 2.85
179 180 6.407202 ACTAGCTCGTTGATTAAAGATGGTT 58.593 36.000 0.00 0.00 0.00 3.67
180 181 5.978814 ACTAGCTCGTTGATTAAAGATGGT 58.021 37.500 0.00 0.00 0.00 3.55
181 182 6.042777 TGACTAGCTCGTTGATTAAAGATGG 58.957 40.000 0.00 0.00 0.00 3.51
182 183 7.276658 ACTTGACTAGCTCGTTGATTAAAGATG 59.723 37.037 0.00 0.00 0.00 2.90
183 184 7.324178 ACTTGACTAGCTCGTTGATTAAAGAT 58.676 34.615 0.00 0.00 0.00 2.40
184 185 6.688578 ACTTGACTAGCTCGTTGATTAAAGA 58.311 36.000 0.00 0.00 0.00 2.52
185 186 6.952935 ACTTGACTAGCTCGTTGATTAAAG 57.047 37.500 0.00 0.00 0.00 1.85
186 187 7.823665 TCTACTTGACTAGCTCGTTGATTAAA 58.176 34.615 0.00 0.00 0.00 1.52
187 188 7.387119 TCTACTTGACTAGCTCGTTGATTAA 57.613 36.000 0.00 0.00 0.00 1.40
188 189 6.038382 CCTCTACTTGACTAGCTCGTTGATTA 59.962 42.308 0.00 0.00 0.00 1.75
189 190 5.163602 CCTCTACTTGACTAGCTCGTTGATT 60.164 44.000 0.00 0.00 0.00 2.57
190 191 4.336993 CCTCTACTTGACTAGCTCGTTGAT 59.663 45.833 0.00 0.00 0.00 2.57
191 192 3.690139 CCTCTACTTGACTAGCTCGTTGA 59.310 47.826 0.00 0.00 0.00 3.18
192 193 3.732471 GCCTCTACTTGACTAGCTCGTTG 60.732 52.174 0.00 0.00 0.00 4.10
193 194 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
194 195 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
195 196 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
196 197 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
197 198 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
198 199 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
199 200 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
200 201 6.896883 TCACTAGTATGCCTCTACTTGACTA 58.103 40.000 0.00 0.00 33.96 2.59
201 202 5.756918 TCACTAGTATGCCTCTACTTGACT 58.243 41.667 0.00 0.00 33.96 3.41
202 203 6.642707 ATCACTAGTATGCCTCTACTTGAC 57.357 41.667 0.00 0.00 33.96 3.18
203 204 7.519057 AGTATCACTAGTATGCCTCTACTTGA 58.481 38.462 0.00 2.60 33.96 3.02
204 205 7.663905 AGAGTATCACTAGTATGCCTCTACTTG 59.336 40.741 10.80 0.00 37.82 3.16
205 206 7.663905 CAGAGTATCACTAGTATGCCTCTACTT 59.336 40.741 11.69 0.00 37.82 2.24
206 207 7.165485 CAGAGTATCACTAGTATGCCTCTACT 58.835 42.308 11.69 5.10 37.82 2.57
207 208 6.938030 ACAGAGTATCACTAGTATGCCTCTAC 59.062 42.308 11.69 1.46 37.82 2.59
208 209 7.080653 ACAGAGTATCACTAGTATGCCTCTA 57.919 40.000 11.69 0.00 37.82 2.43
209 210 5.947663 ACAGAGTATCACTAGTATGCCTCT 58.052 41.667 0.00 1.89 37.82 3.69
210 211 6.642707 AACAGAGTATCACTAGTATGCCTC 57.357 41.667 0.00 0.00 37.82 4.70
211 212 6.381420 ACAAACAGAGTATCACTAGTATGCCT 59.619 38.462 0.00 0.00 37.82 4.75
212 213 6.574350 ACAAACAGAGTATCACTAGTATGCC 58.426 40.000 0.00 0.00 37.82 4.40
213 214 8.480643 AAACAAACAGAGTATCACTAGTATGC 57.519 34.615 0.00 0.00 37.82 3.14
241 242 8.783093 CCGGAAACATAATACATGTGTGAATAT 58.217 33.333 9.11 0.00 31.80 1.28
242 243 7.771361 ACCGGAAACATAATACATGTGTGAATA 59.229 33.333 9.46 0.00 31.80 1.75
243 244 6.601613 ACCGGAAACATAATACATGTGTGAAT 59.398 34.615 9.46 0.00 31.80 2.57
244 245 5.941058 ACCGGAAACATAATACATGTGTGAA 59.059 36.000 9.46 0.00 31.80 3.18
245 246 5.492895 ACCGGAAACATAATACATGTGTGA 58.507 37.500 9.46 0.00 31.80 3.58
246 247 5.811399 ACCGGAAACATAATACATGTGTG 57.189 39.130 9.46 4.81 31.80 3.82
247 248 7.925043 TTAACCGGAAACATAATACATGTGT 57.075 32.000 9.46 0.00 31.80 3.72
248 249 9.872757 GTATTAACCGGAAACATAATACATGTG 57.127 33.333 9.46 0.00 39.40 3.21
249 250 9.616156 TGTATTAACCGGAAACATAATACATGT 57.384 29.630 22.31 2.69 42.13 3.21
258 259 8.524487 TGCTAAAATTGTATTAACCGGAAACAT 58.476 29.630 9.46 0.00 0.00 2.71
259 260 7.883217 TGCTAAAATTGTATTAACCGGAAACA 58.117 30.769 9.46 1.34 0.00 2.83
260 261 8.803799 CATGCTAAAATTGTATTAACCGGAAAC 58.196 33.333 9.46 0.00 0.00 2.78
261 262 8.740906 TCATGCTAAAATTGTATTAACCGGAAA 58.259 29.630 9.46 1.61 0.00 3.13
262 263 8.282455 TCATGCTAAAATTGTATTAACCGGAA 57.718 30.769 9.46 0.00 0.00 4.30
263 264 7.867305 TCATGCTAAAATTGTATTAACCGGA 57.133 32.000 9.46 0.00 0.00 5.14
330 331 9.959721 GGAAATATGTCCTAGAGGCAATAATAA 57.040 33.333 4.48 0.00 34.56 1.40
331 332 9.338968 AGGAAATATGTCCTAGAGGCAATAATA 57.661 33.333 13.25 0.00 46.69 0.98
332 333 8.224620 AGGAAATATGTCCTAGAGGCAATAAT 57.775 34.615 13.25 0.00 46.69 1.28
333 334 7.633018 AGGAAATATGTCCTAGAGGCAATAA 57.367 36.000 13.25 0.00 46.69 1.40
352 353 9.618890 CTGTTCCTATATCAAGAATGAAGGAAA 57.381 33.333 10.49 3.88 45.21 3.13
353 354 8.772250 ACTGTTCCTATATCAAGAATGAAGGAA 58.228 33.333 6.44 6.44 43.20 3.36
354 355 8.324191 ACTGTTCCTATATCAAGAATGAAGGA 57.676 34.615 0.00 0.00 38.00 3.36
355 356 7.383572 CGACTGTTCCTATATCAAGAATGAAGG 59.616 40.741 0.00 0.00 39.49 3.46
356 357 7.095857 GCGACTGTTCCTATATCAAGAATGAAG 60.096 40.741 0.00 0.00 39.49 3.02
357 358 6.701841 GCGACTGTTCCTATATCAAGAATGAA 59.298 38.462 0.00 0.00 39.49 2.57
358 359 6.216569 GCGACTGTTCCTATATCAAGAATGA 58.783 40.000 0.00 0.00 40.57 2.57
359 360 5.406780 GGCGACTGTTCCTATATCAAGAATG 59.593 44.000 0.00 0.00 0.00 2.67
360 361 5.542779 GGCGACTGTTCCTATATCAAGAAT 58.457 41.667 0.00 0.00 0.00 2.40
382 383 6.574350 AGACCAAAAGTATCTATGAAGACGG 58.426 40.000 0.00 0.00 33.57 4.79
387 388 6.683110 GCGAGGAGACCAAAAGTATCTATGAA 60.683 42.308 0.00 0.00 36.89 2.57
392 393 2.168728 GGCGAGGAGACCAAAAGTATCT 59.831 50.000 0.00 0.00 36.89 1.98
394 395 2.168728 GAGGCGAGGAGACCAAAAGTAT 59.831 50.000 0.00 0.00 0.00 2.12
432 433 1.075896 GGTCCTCCCACCTCTCGAT 60.076 63.158 0.00 0.00 33.08 3.59
433 434 2.239439 AGGTCCTCCCACCTCTCGA 61.239 63.158 0.00 0.00 44.08 4.04
442 443 3.389656 CCTTAAAGATCAGAGGTCCTCCC 59.610 52.174 15.72 2.94 0.00 4.30
469 470 6.499106 TCTAGATCACCAATAGATGCCAAA 57.501 37.500 0.00 0.00 0.00 3.28
470 471 6.692849 ATCTAGATCACCAATAGATGCCAA 57.307 37.500 0.00 0.00 35.46 4.52
511 512 6.146347 GTGGCACCGCAAAATAAAAATAAGAA 59.854 34.615 6.29 0.00 0.00 2.52
516 517 3.733337 TGTGGCACCGCAAAATAAAAAT 58.267 36.364 16.26 0.00 33.12 1.82
517 518 3.179443 TGTGGCACCGCAAAATAAAAA 57.821 38.095 16.26 0.00 33.12 1.94
540 541 5.689383 TTGATGACACAAACCTCTTTAGC 57.311 39.130 0.00 0.00 0.00 3.09
598 599 6.720012 ACCAACAAAAACAACTTAAAGCAG 57.280 33.333 0.00 0.00 0.00 4.24
687 688 5.579904 CCAGTGATGATATCCTAGAAATGCG 59.420 44.000 0.00 0.00 0.00 4.73
689 690 6.709281 AGCCAGTGATGATATCCTAGAAATG 58.291 40.000 0.00 0.00 0.00 2.32
691 692 7.855784 TTAGCCAGTGATGATATCCTAGAAA 57.144 36.000 0.00 0.00 0.00 2.52
718 719 3.752796 GCATTGAGCCATGTGCATT 57.247 47.368 8.58 0.00 44.83 3.56
734 736 2.494471 CCATCCAAGAAGATGCAAAGCA 59.506 45.455 0.00 0.00 41.98 3.91
735 737 2.159142 CCCATCCAAGAAGATGCAAAGC 60.159 50.000 0.00 0.00 41.98 3.51
737 739 1.826720 GCCCATCCAAGAAGATGCAAA 59.173 47.619 0.00 0.00 41.98 3.68
747 749 1.686115 CCCCTAAGTTGCCCATCCAAG 60.686 57.143 0.00 0.00 0.00 3.61
896 898 7.116736 GGTATCTTTTGGAAACATCTTCCCTA 58.883 38.462 1.18 0.00 42.32 3.53
899 901 6.434340 AGTGGTATCTTTTGGAAACATCTTCC 59.566 38.462 0.00 0.00 42.32 3.46
961 963 7.373493 ACACTGCTTTGGATTTTAAGATCAAG 58.627 34.615 8.15 5.34 0.00 3.02
962 964 7.288810 ACACTGCTTTGGATTTTAAGATCAA 57.711 32.000 8.15 0.00 0.00 2.57
964 966 7.121315 ACCTACACTGCTTTGGATTTTAAGATC 59.879 37.037 0.00 0.00 0.00 2.75
1016 1043 7.867909 CCCTGTAACAGATTTCCTTTTTCTTTC 59.132 37.037 0.00 0.00 32.44 2.62
1020 1047 5.538813 ACCCCTGTAACAGATTTCCTTTTTC 59.461 40.000 0.00 0.00 32.44 2.29
1021 1048 5.464069 ACCCCTGTAACAGATTTCCTTTTT 58.536 37.500 0.00 0.00 32.44 1.94
1022 1049 5.074746 ACCCCTGTAACAGATTTCCTTTT 57.925 39.130 0.00 0.00 32.44 2.27
1023 1050 4.741928 ACCCCTGTAACAGATTTCCTTT 57.258 40.909 0.00 0.00 32.44 3.11
1024 1051 5.853572 TTACCCCTGTAACAGATTTCCTT 57.146 39.130 0.00 0.00 32.04 3.36
1025 1052 5.853572 TTTACCCCTGTAACAGATTTCCT 57.146 39.130 0.00 0.00 36.69 3.36
1026 1053 7.039293 ACAATTTTACCCCTGTAACAGATTTCC 60.039 37.037 0.00 0.00 36.69 3.13
1027 1054 7.812669 CACAATTTTACCCCTGTAACAGATTTC 59.187 37.037 0.00 0.00 36.69 2.17
1053 1080 2.169561 GAGGTGGGTGAGGAGATCTTTC 59.830 54.545 0.00 0.00 0.00 2.62
1127 1154 2.175202 GCATTGGTGATGGGGTGTTAA 58.825 47.619 0.00 0.00 36.21 2.01
1223 1250 4.316823 AGAGGTGGGCACGGAGGA 62.317 66.667 0.00 0.00 0.00 3.71
1273 1303 0.696501 TTGAGTTGGGGTAGGAAGCC 59.303 55.000 0.00 0.00 42.94 4.35
1443 1473 3.151022 GAGACGGAGGGGAGCAGG 61.151 72.222 0.00 0.00 0.00 4.85
1743 1773 0.742990 CCGTGTACATGTTGGGCGAT 60.743 55.000 13.91 0.00 0.00 4.58
1817 1847 1.368345 CGGCATTTCATCGAGCACCA 61.368 55.000 0.00 0.00 0.00 4.17
1853 1883 0.249911 GTTGAAGCTGACCACCGTCT 60.250 55.000 0.00 0.00 39.94 4.18
1965 1995 2.572191 TCGTGTTATAGGTTGCCTCG 57.428 50.000 0.00 0.00 34.61 4.63
1970 2000 4.665833 TGGAGGATCGTGTTATAGGTTG 57.334 45.455 0.00 0.00 34.37 3.77
1971 2001 4.654262 ACATGGAGGATCGTGTTATAGGTT 59.346 41.667 0.00 0.00 31.83 3.50
2019 2049 1.394917 CTCAAGAAACGATTCGCCTGG 59.605 52.381 5.86 0.00 40.63 4.45
2022 2052 0.247301 CGCTCAAGAAACGATTCGCC 60.247 55.000 5.86 0.00 40.63 5.54
2034 2064 1.078709 TCGCCTTCATTTCGCTCAAG 58.921 50.000 0.00 0.00 0.00 3.02
2051 2081 1.301401 TTCGGCACAACCCTCTTCG 60.301 57.895 0.00 0.00 33.26 3.79
2235 2265 1.409790 AGCTGCTGAAACAAATGCACA 59.590 42.857 0.00 0.00 0.00 4.57
2662 2692 3.200605 TGTACATTCTGATGAGGCACCAT 59.799 43.478 0.00 0.00 36.73 3.55
2663 2693 2.571202 TGTACATTCTGATGAGGCACCA 59.429 45.455 0.00 0.00 36.73 4.17
2664 2694 3.266510 TGTACATTCTGATGAGGCACC 57.733 47.619 0.00 0.00 36.73 5.01
2665 2695 5.824904 AATTGTACATTCTGATGAGGCAC 57.175 39.130 0.00 0.00 36.73 5.01
2708 2741 5.999600 GGTACAAGCAGAAGGGTTTAACTTA 59.000 40.000 0.00 0.00 34.30 2.24
2711 2744 4.139038 TGGTACAAGCAGAAGGGTTTAAC 58.861 43.478 0.00 0.00 34.30 2.01
2746 2779 3.374988 ACGTTCATAGGCATGTGTCAATG 59.625 43.478 0.00 0.00 33.57 2.82
2747 2780 3.609853 ACGTTCATAGGCATGTGTCAAT 58.390 40.909 0.00 0.00 33.57 2.57
2765 2798 6.238648 CCTTCACTTAATCCAAACAGAAACGT 60.239 38.462 0.00 0.00 0.00 3.99
2768 2801 5.596361 TGCCTTCACTTAATCCAAACAGAAA 59.404 36.000 0.00 0.00 0.00 2.52
2779 2813 4.098914 TGTCAGGTTGCCTTCACTTAAT 57.901 40.909 0.00 0.00 0.00 1.40
2781 2815 3.118038 AGTTGTCAGGTTGCCTTCACTTA 60.118 43.478 0.00 0.00 0.00 2.24
2784 2818 1.680338 AGTTGTCAGGTTGCCTTCAC 58.320 50.000 0.00 0.00 0.00 3.18
2790 2824 3.366374 GGCAAGAATAGTTGTCAGGTTGC 60.366 47.826 0.00 0.00 38.63 4.17
2802 2836 4.342378 TCAGCTACCTACAGGCAAGAATAG 59.658 45.833 0.00 0.00 39.32 1.73
2826 2860 0.380378 TTCTTGCAGGAACACGCAAC 59.620 50.000 7.24 0.00 42.93 4.17
2831 2865 3.406764 AGTCATCTTCTTGCAGGAACAC 58.593 45.455 7.24 2.62 0.00 3.32
2833 2867 3.620821 GCTAGTCATCTTCTTGCAGGAAC 59.379 47.826 7.24 0.00 34.78 3.62
2834 2868 3.261643 TGCTAGTCATCTTCTTGCAGGAA 59.738 43.478 11.15 11.15 38.32 3.36
2840 2874 6.748333 TTCCATTTGCTAGTCATCTTCTTG 57.252 37.500 0.00 0.00 0.00 3.02
2841 2875 8.270744 AGTATTCCATTTGCTAGTCATCTTCTT 58.729 33.333 0.00 0.00 0.00 2.52
2884 2925 8.084073 AGAATTCTTGGTTGACATATTTGTGTG 58.916 33.333 0.88 0.00 35.79 3.82
2919 2960 3.455910 AGCCTGTAACTCCATAAGCATCA 59.544 43.478 0.00 0.00 0.00 3.07
2944 2985 4.157656 ACACAAGCTGTTGCAAGAAAAGTA 59.842 37.500 0.00 0.00 42.74 2.24
2960 3001 6.701400 ACTTTTGTCAATGGAATAACACAAGC 59.299 34.615 0.00 0.00 34.39 4.01
2981 3022 6.176183 CCAGTGGAGTTTCATCTGATACTTT 58.824 40.000 1.68 0.00 36.66 2.66
2982 3023 5.249393 ACCAGTGGAGTTTCATCTGATACTT 59.751 40.000 18.40 0.00 36.66 2.24
3004 3045 7.588488 CAGCACAAATCAATTCAAATTTTCACC 59.412 33.333 0.00 0.00 0.00 4.02
3032 3073 2.366590 TGATATGGTGCTGGTGCTAGAG 59.633 50.000 0.00 0.00 40.48 2.43
3087 3132 9.180678 ACTGAATTTGAAATTGACATTACGAAC 57.819 29.630 8.03 0.00 0.00 3.95
3088 3133 9.743057 AACTGAATTTGAAATTGACATTACGAA 57.257 25.926 8.03 0.00 0.00 3.85
3089 3134 9.743057 AAACTGAATTTGAAATTGACATTACGA 57.257 25.926 8.03 0.00 0.00 3.43
3138 3195 5.507985 GGAAATCACTGTTAACTGCTTTGCT 60.508 40.000 11.98 0.00 0.00 3.91
3150 3207 5.602145 TGAAGAAAATGGGGAAATCACTGTT 59.398 36.000 0.00 0.00 0.00 3.16
3151 3208 5.147032 TGAAGAAAATGGGGAAATCACTGT 58.853 37.500 0.00 0.00 0.00 3.55
3154 3211 5.728637 ACTGAAGAAAATGGGGAAATCAC 57.271 39.130 0.00 0.00 0.00 3.06
3188 3245 8.919145 AGAGGAGAACTACAATGTCTTATAAGG 58.081 37.037 12.54 0.00 0.00 2.69
3199 3256 8.718656 AGGCATATAAAAGAGGAGAACTACAAT 58.281 33.333 0.00 0.00 0.00 2.71
3204 3261 6.042666 GGAGAGGCATATAAAAGAGGAGAACT 59.957 42.308 0.00 0.00 0.00 3.01
3261 3318 9.423061 GGTAATTGTTAATTCAGCAAACATCTT 57.577 29.630 0.00 0.00 33.44 2.40
3288 3345 5.287674 TGCATCATGGTTTTCCTTTTTGA 57.712 34.783 0.00 0.00 41.38 2.69
3295 3352 3.091545 TCTTCCTGCATCATGGTTTTCC 58.908 45.455 0.00 0.00 41.14 3.13
3305 3362 5.016051 TGTATCTGTCTTCTTCCTGCATC 57.984 43.478 0.00 0.00 0.00 3.91
3306 3363 5.426689 TTGTATCTGTCTTCTTCCTGCAT 57.573 39.130 0.00 0.00 0.00 3.96
3364 3421 6.172630 ACTATATTGAGTGTGTTGTGCATCA 58.827 36.000 0.00 0.00 0.00 3.07
3390 3447 6.203723 GTGACTAATCTTTGGCATGGAGATAC 59.796 42.308 8.39 1.60 30.33 2.24
3401 3458 9.141400 GTAAGTGACTTAGTGACTAATCTTTGG 57.859 37.037 4.70 0.00 28.48 3.28
3417 3474 9.871238 CCAACTACAACTATATGTAAGTGACTT 57.129 33.333 2.37 2.37 35.48 3.01
3419 3476 7.980099 AGCCAACTACAACTATATGTAAGTGAC 59.020 37.037 0.00 0.00 35.48 3.67
3420 3477 8.074613 AGCCAACTACAACTATATGTAAGTGA 57.925 34.615 0.00 0.00 35.48 3.41
3421 3478 7.438459 GGAGCCAACTACAACTATATGTAAGTG 59.562 40.741 0.00 0.00 35.48 3.16
3422 3479 7.344871 AGGAGCCAACTACAACTATATGTAAGT 59.655 37.037 0.00 0.00 35.48 2.24
3423 3480 7.727181 AGGAGCCAACTACAACTATATGTAAG 58.273 38.462 0.00 0.00 35.48 2.34
3424 3481 7.670605 AGGAGCCAACTACAACTATATGTAA 57.329 36.000 0.00 0.00 35.48 2.41
3425 3482 8.003044 ACTAGGAGCCAACTACAACTATATGTA 58.997 37.037 0.00 0.00 34.75 2.29
3426 3483 6.839657 ACTAGGAGCCAACTACAACTATATGT 59.160 38.462 0.00 0.00 37.32 2.29
3427 3484 7.291411 ACTAGGAGCCAACTACAACTATATG 57.709 40.000 0.00 0.00 0.00 1.78
3428 3485 7.916077 AACTAGGAGCCAACTACAACTATAT 57.084 36.000 0.00 0.00 0.00 0.86
3429 3486 7.179694 ACAAACTAGGAGCCAACTACAACTATA 59.820 37.037 0.00 0.00 0.00 1.31
3430 3487 6.013639 ACAAACTAGGAGCCAACTACAACTAT 60.014 38.462 0.00 0.00 0.00 2.12
3439 3496 7.065923 CCTTTAATAGACAAACTAGGAGCCAAC 59.934 40.741 0.00 0.00 34.35 3.77
3443 3500 8.788325 TTTCCTTTAATAGACAAACTAGGAGC 57.212 34.615 0.00 0.00 32.20 4.70
3489 3634 3.409570 CAGGATGACTGCCATAATGGAG 58.590 50.000 0.00 0.00 38.01 3.86
3541 3686 8.597662 ATTATGCATGTGAAGGCAAATATTTC 57.402 30.769 10.16 0.00 44.20 2.17
3542 3687 8.967664 AATTATGCATGTGAAGGCAAATATTT 57.032 26.923 10.16 0.00 44.20 1.40
3543 3688 8.426489 AGAATTATGCATGTGAAGGCAAATATT 58.574 29.630 10.16 0.00 44.20 1.28
3544 3689 7.959175 AGAATTATGCATGTGAAGGCAAATAT 58.041 30.769 10.16 0.00 44.20 1.28
3545 3690 7.350744 AGAATTATGCATGTGAAGGCAAATA 57.649 32.000 10.16 0.00 44.20 1.40
3546 3691 6.229936 AGAATTATGCATGTGAAGGCAAAT 57.770 33.333 10.16 0.00 44.20 2.32
3575 3720 7.611467 TCCAATATACTCAAGCTGAAACAACAT 59.389 33.333 0.00 0.00 0.00 2.71
3607 3752 6.868339 GCATTTTTAGAATTTAGTGCCTGTGT 59.132 34.615 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.