Multiple sequence alignment - TraesCS2A01G338900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G338900 chr2A 100.000 6658 0 0 1539 8196 572807502 572800845 0.000000e+00 12296.0
1 TraesCS2A01G338900 chr2A 100.000 1112 0 0 1 1112 572809040 572807929 0.000000e+00 2054.0
2 TraesCS2A01G338900 chr2D 95.198 6602 189 45 1539 8090 417159438 417165961 0.000000e+00 10318.0
3 TraesCS2A01G338900 chr2D 100.000 67 0 0 775 841 107696196 107696130 3.110000e-24 124.0
4 TraesCS2A01G338900 chr2D 93.023 43 3 0 5509 5551 1816680 1816722 6.870000e-06 63.9
5 TraesCS2A01G338900 chr2D 90.909 44 4 0 3681 3724 6586702 6586745 8.880000e-05 60.2
6 TraesCS2A01G338900 chr2B 96.053 4586 124 23 1557 6103 489007198 489011765 0.000000e+00 7413.0
7 TraesCS2A01G338900 chr2B 89.984 1268 62 21 6168 7425 489011765 489012977 0.000000e+00 1578.0
8 TraesCS2A01G338900 chr2B 83.173 624 44 21 7479 8090 489012991 489013565 1.580000e-141 514.0
9 TraesCS2A01G338900 chr2B 90.323 341 27 5 775 1112 489006642 489006979 7.550000e-120 442.0
10 TraesCS2A01G338900 chr2B 87.977 341 34 5 1 334 489004800 489005140 5.960000e-106 396.0
11 TraesCS2A01G338900 chr2B 100.000 31 0 0 3694 3724 1163251 1163281 3.200000e-04 58.4
12 TraesCS2A01G338900 chr7B 97.333 75 2 0 775 849 533308165 533308239 2.400000e-25 128.0
13 TraesCS2A01G338900 chr7B 100.000 67 0 0 775 841 535699040 535699106 3.110000e-24 124.0
14 TraesCS2A01G338900 chr1D 100.000 68 0 0 775 842 379787353 379787420 8.640000e-25 126.0
15 TraesCS2A01G338900 chr7D 100.000 67 0 0 775 841 505141458 505141524 3.110000e-24 124.0
16 TraesCS2A01G338900 chr5D 100.000 67 0 0 775 841 347450077 347450011 3.110000e-24 124.0
17 TraesCS2A01G338900 chr5D 85.484 62 7 2 353 413 202130263 202130203 6.870000e-06 63.9
18 TraesCS2A01G338900 chr5B 100.000 67 0 0 775 841 403702360 403702426 3.110000e-24 124.0
19 TraesCS2A01G338900 chr1B 100.000 67 0 0 775 841 509566005 509566071 3.110000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G338900 chr2A 572800845 572809040 8195 True 7175.0 12296 100.000 1 8196 2 chr2A.!!$R1 8195
1 TraesCS2A01G338900 chr2D 417159438 417165961 6523 False 10318.0 10318 95.198 1539 8090 1 chr2D.!!$F3 6551
2 TraesCS2A01G338900 chr2B 489004800 489013565 8765 False 2068.6 7413 89.502 1 8090 5 chr2B.!!$F2 8089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 730 0.828022 ATTTGTATGGACGAGCCCGA 59.172 50.000 0.00 0.00 39.50 5.14 F
845 1920 1.623311 TCGGCCATCTTGACTTCTTGA 59.377 47.619 2.24 0.00 0.00 3.02 F
1751 2837 1.078497 AGCCATGATCGGTTGCGAA 60.078 52.632 0.00 0.00 0.00 4.70 F
2280 3369 0.036732 ATCTGTTCGGTGTGCATGGT 59.963 50.000 0.00 0.00 0.00 3.55 F
3778 4875 1.610086 ACTCTCCTCTGCTGCTGCT 60.610 57.895 17.00 0.00 40.48 4.24 F
4039 5143 0.886043 GTTCGGCAACCCTAACCGTT 60.886 55.000 0.00 0.00 46.92 4.44 F
4801 5906 0.951558 CAACGCTTAAAGTGCACCCT 59.048 50.000 14.63 3.01 0.00 4.34 F
5138 6243 1.065109 GAAGTTGCCGCGGTTGTTT 59.935 52.632 28.70 16.35 0.00 2.83 F
6918 8055 0.173481 CGCAAGGTACAGAGCTGCTA 59.827 55.000 0.15 0.00 32.39 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1553 2629 0.040425 GCGTGCATTCGGTTCTTGTT 60.040 50.000 0.00 0.00 0.00 2.83 R
1810 2898 0.464452 AGCACTATTAGCGTGTCCCC 59.536 55.000 0.00 0.00 37.01 4.81 R
3627 4721 0.673437 TGCAACAAGTAGGCCTTTGC 59.327 50.000 25.65 25.65 37.40 3.68 R
3784 4881 0.612744 TGTTCCATGGCATGACGAGA 59.387 50.000 28.43 14.02 0.00 4.04 R
5041 6146 0.321564 CAGCCGTTCCAACCAGATCA 60.322 55.000 0.00 0.00 0.00 2.92 R
5545 6663 1.131315 GTTTCATGAAAGAGCCGAGCC 59.869 52.381 21.05 2.72 0.00 4.70 R
6432 7560 1.324383 TTTGGTCTTTCCCGAAAGCC 58.676 50.000 11.56 14.75 45.48 4.35 R
6938 8075 0.027979 CATGGGAATTACAGCGCGTG 59.972 55.000 8.43 7.60 0.00 5.34 R
8114 9302 0.111061 ACCATGAGTGTGCACCATGT 59.889 50.000 24.06 14.37 37.83 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.065371 CCATCTTTTCGTGATAAGTGGCC 59.935 47.826 0.00 0.00 0.00 5.36
32 33 2.368439 GTGATAAGTGGCCTGATTGCA 58.632 47.619 3.32 0.00 0.00 4.08
33 34 2.954318 GTGATAAGTGGCCTGATTGCAT 59.046 45.455 3.32 0.00 0.00 3.96
35 36 3.633525 TGATAAGTGGCCTGATTGCATTC 59.366 43.478 3.32 1.55 0.00 2.67
42 43 2.360165 GGCCTGATTGCATTCCTAACAG 59.640 50.000 6.16 0.00 0.00 3.16
89 90 4.035102 GCCCCGTGGAGAAAGGCT 62.035 66.667 0.00 0.00 40.57 4.58
103 104 5.998363 GGAGAAAGGCTAAAGAAAAGTCTGA 59.002 40.000 0.00 0.00 33.05 3.27
123 124 7.389053 AGTCTGACTTTGAACTAATAAAGCCTG 59.611 37.037 4.06 0.00 37.40 4.85
142 143 5.473504 AGCCTGAGAATGAAAATAACAACGT 59.526 36.000 0.00 0.00 0.00 3.99
169 170 4.929819 ACTTTTACAAGCCAAACCGAAT 57.070 36.364 0.00 0.00 32.57 3.34
181 182 4.089351 GCCAAACCGAATAACAATGAAACG 59.911 41.667 0.00 0.00 0.00 3.60
193 194 5.978934 ACAATGAAACGAGTACGAAAGTT 57.021 34.783 0.00 0.00 46.40 2.66
194 195 5.970879 ACAATGAAACGAGTACGAAAGTTC 58.029 37.500 0.00 0.00 46.40 3.01
200 201 6.477688 TGAAACGAGTACGAAAGTTCAAAGAT 59.522 34.615 0.00 0.00 46.40 2.40
201 202 6.449448 AACGAGTACGAAAGTTCAAAGATC 57.551 37.500 0.00 0.00 46.40 2.75
229 237 6.166982 AGCACACAACTAGATAAGAAAGACC 58.833 40.000 0.00 0.00 0.00 3.85
233 241 8.037758 CACACAACTAGATAAGAAAGACCAGAT 58.962 37.037 0.00 0.00 0.00 2.90
238 246 9.883142 AACTAGATAAGAAAGACCAGATGAAAG 57.117 33.333 0.00 0.00 0.00 2.62
245 253 6.537355 AGAAAGACCAGATGAAAGATGTTGA 58.463 36.000 0.00 0.00 0.00 3.18
248 256 5.191426 AGACCAGATGAAAGATGTTGATGG 58.809 41.667 0.00 0.00 0.00 3.51
249 257 3.698040 ACCAGATGAAAGATGTTGATGGC 59.302 43.478 0.00 0.00 0.00 4.40
250 258 3.697542 CCAGATGAAAGATGTTGATGGCA 59.302 43.478 0.00 0.00 0.00 4.92
279 287 3.627395 TCCGATCAGCTATGTTGGTTT 57.373 42.857 0.00 0.00 0.00 3.27
281 289 3.689161 TCCGATCAGCTATGTTGGTTTTG 59.311 43.478 0.00 0.00 0.00 2.44
292 300 3.486383 TGTTGGTTTTGTGGATCTCCTC 58.514 45.455 0.00 0.00 36.82 3.71
337 345 8.623030 GTTATAACCAAACAACTTGTTGGAGTA 58.377 33.333 20.80 14.99 40.14 2.59
339 347 6.538945 AACCAAACAACTTGTTGGAGTATT 57.461 33.333 20.80 8.97 40.14 1.89
340 348 6.538945 ACCAAACAACTTGTTGGAGTATTT 57.461 33.333 20.80 5.99 40.14 1.40
341 349 6.569780 ACCAAACAACTTGTTGGAGTATTTC 58.430 36.000 20.80 0.00 40.14 2.17
349 661 8.901748 CAACTTGTTGGAGTATTTCGTATTTTG 58.098 33.333 5.65 0.00 0.00 2.44
373 685 4.330074 GTCCATGTTCTCATACAAACTCCG 59.670 45.833 0.00 0.00 32.47 4.63
380 692 6.316640 TGTTCTCATACAAACTCCGTTTTTGA 59.683 34.615 7.42 0.00 37.39 2.69
394 706 4.739716 CCGTTTTTGATGTTCTTGGACTTG 59.260 41.667 0.00 0.00 0.00 3.16
402 714 5.598005 TGATGTTCTTGGACTTGTTGGATTT 59.402 36.000 0.00 0.00 0.00 2.17
416 728 1.134220 TGGATTTGTATGGACGAGCCC 60.134 52.381 0.00 0.00 34.97 5.19
417 729 1.217882 GATTTGTATGGACGAGCCCG 58.782 55.000 0.00 0.00 42.50 6.13
418 730 0.828022 ATTTGTATGGACGAGCCCGA 59.172 50.000 0.00 0.00 39.50 5.14
419 731 0.828022 TTTGTATGGACGAGCCCGAT 59.172 50.000 0.00 0.00 39.50 4.18
420 732 1.694844 TTGTATGGACGAGCCCGATA 58.305 50.000 0.00 0.00 39.50 2.92
423 735 3.423749 TGTATGGACGAGCCCGATAATA 58.576 45.455 0.00 0.00 39.50 0.98
428 740 4.274978 TGGACGAGCCCGATAATATCATA 58.725 43.478 0.00 0.00 39.50 2.15
435 747 6.756542 CGAGCCCGATAATATCATAATGTTGA 59.243 38.462 0.87 0.00 38.22 3.18
457 769 9.651913 GTTGAATCTTTAATTTGGGCTTATTGA 57.348 29.630 0.00 0.00 0.00 2.57
458 770 9.874205 TTGAATCTTTAATTTGGGCTTATTGAG 57.126 29.630 0.00 0.00 0.00 3.02
466 778 4.981806 TTGGGCTTATTGAGAAATTCCG 57.018 40.909 0.00 0.00 0.00 4.30
479 791 5.468746 TGAGAAATTCCGTTTTGTCGAATCT 59.531 36.000 0.00 0.00 32.97 2.40
492 804 3.830178 TGTCGAATCTGTCAAAGGGTCTA 59.170 43.478 0.00 0.00 0.00 2.59
512 824 5.409826 GTCTAGATGCAGTGCTTGTAACTTT 59.590 40.000 17.60 0.00 0.00 2.66
514 826 5.113502 AGATGCAGTGCTTGTAACTTTTC 57.886 39.130 17.60 0.00 0.00 2.29
515 827 4.823989 AGATGCAGTGCTTGTAACTTTTCT 59.176 37.500 17.60 0.00 0.00 2.52
532 844 2.241281 TCTGGATCGGTCCCAACTTA 57.759 50.000 13.41 0.00 44.41 2.24
543 856 5.013391 TCGGTCCCAACTTAATTCCTTTAGT 59.987 40.000 0.00 0.00 0.00 2.24
559 872 6.942976 TCCTTTAGTGTGTTAAGTCTATGGG 58.057 40.000 0.00 0.00 0.00 4.00
565 878 6.465084 AGTGTGTTAAGTCTATGGGAGTTTC 58.535 40.000 0.00 0.00 38.43 2.78
567 880 6.879458 GTGTGTTAAGTCTATGGGAGTTTCAT 59.121 38.462 0.00 0.00 38.43 2.57
576 889 2.790433 TGGGAGTTTCATTGCACCTAC 58.210 47.619 0.00 0.00 0.00 3.18
581 894 3.561143 AGTTTCATTGCACCTACACCAA 58.439 40.909 0.00 0.00 0.00 3.67
590 903 3.894427 TGCACCTACACCAACAATGAAAT 59.106 39.130 0.00 0.00 0.00 2.17
628 941 9.941325 AATAAAACTTAATGGATGTGCAATGAA 57.059 25.926 0.00 0.00 0.00 2.57
669 982 6.875195 GGAAACCATAAATCATGCATAATGGG 59.125 38.462 19.76 10.71 36.86 4.00
682 995 3.132646 GCATAATGGGCATGAAAAGTGGA 59.867 43.478 0.00 0.00 0.00 4.02
706 1019 5.855338 ACATGGATCATGATATGAGGGTT 57.145 39.130 20.48 0.63 43.81 4.11
723 1036 3.056465 AGGGTTTTTGAAGCAACAAACGA 60.056 39.130 7.61 0.00 39.08 3.85
725 1038 3.241963 GGTTTTTGAAGCAACAAACGAGC 60.242 43.478 7.61 6.34 39.08 5.03
733 1046 4.210832 AGCAACAAACGAGCTCTAAAAC 57.789 40.909 12.85 0.00 32.05 2.43
841 1915 1.734465 CAACTCGGCCATCTTGACTTC 59.266 52.381 2.24 0.00 0.00 3.01
845 1920 1.623311 TCGGCCATCTTGACTTCTTGA 59.377 47.619 2.24 0.00 0.00 3.02
846 1921 2.038426 TCGGCCATCTTGACTTCTTGAA 59.962 45.455 2.24 0.00 0.00 2.69
850 1925 4.984785 GGCCATCTTGACTTCTTGAAAAAC 59.015 41.667 0.00 0.00 0.00 2.43
853 1928 6.534793 GCCATCTTGACTTCTTGAAAAACAAA 59.465 34.615 0.00 0.00 38.08 2.83
869 1944 9.883142 TGAAAAACAAATTTCAAAGTGGTAGAT 57.117 25.926 0.30 0.00 44.11 1.98
871 1946 9.665719 AAAAACAAATTTCAAAGTGGTAGATGT 57.334 25.926 0.00 0.00 0.00 3.06
873 1948 8.647143 AACAAATTTCAAAGTGGTAGATGTTG 57.353 30.769 0.00 0.00 0.00 3.33
874 1949 7.209475 ACAAATTTCAAAGTGGTAGATGTTGG 58.791 34.615 0.00 0.00 0.00 3.77
875 1950 4.846779 TTTCAAAGTGGTAGATGTTGGC 57.153 40.909 0.00 0.00 0.00 4.52
877 1952 3.411446 TCAAAGTGGTAGATGTTGGCTG 58.589 45.455 0.00 0.00 0.00 4.85
878 1953 3.072330 TCAAAGTGGTAGATGTTGGCTGA 59.928 43.478 0.00 0.00 0.00 4.26
879 1954 4.012374 CAAAGTGGTAGATGTTGGCTGAT 58.988 43.478 0.00 0.00 0.00 2.90
907 1983 1.929836 CATAGCTGCGACCTTCTTCAC 59.070 52.381 0.00 0.00 0.00 3.18
918 1994 3.610911 ACCTTCTTCACATTCCCGATTC 58.389 45.455 0.00 0.00 0.00 2.52
919 1995 3.009033 ACCTTCTTCACATTCCCGATTCA 59.991 43.478 0.00 0.00 0.00 2.57
921 1997 3.981071 TCTTCACATTCCCGATTCAGT 57.019 42.857 0.00 0.00 0.00 3.41
945 2021 3.915437 TTTTCCGAGACAAAGATTGCC 57.085 42.857 0.00 0.00 0.00 4.52
969 2045 2.322658 TCGTAAAGACCTGAACCCAGT 58.677 47.619 0.00 0.00 38.74 4.00
1561 2637 3.081804 CCACCTCCCATGTAACAAGAAC 58.918 50.000 0.00 0.00 0.00 3.01
1656 2742 7.034685 TCAGATTCTGTATGCCAATCAATTG 57.965 36.000 13.23 0.00 33.88 2.32
1748 2834 1.882912 TATGAGCCATGATCGGTTGC 58.117 50.000 0.00 0.00 0.00 4.17
1751 2837 1.078497 AGCCATGATCGGTTGCGAA 60.078 52.632 0.00 0.00 0.00 4.70
1991 3080 2.730090 CGCTTGCTATGAAGTTTGCCAG 60.730 50.000 0.00 0.00 0.00 4.85
2014 3103 0.108992 TGGTGAACCGACGCTCATAC 60.109 55.000 1.80 0.49 39.43 2.39
2126 3215 8.844865 ATTCTTTAGCCCCTCTTTTGAATATT 57.155 30.769 0.00 0.00 0.00 1.28
2162 3251 0.395311 TAGGACCTGAGTGGCGGTAG 60.395 60.000 3.53 0.00 40.22 3.18
2280 3369 0.036732 ATCTGTTCGGTGTGCATGGT 59.963 50.000 0.00 0.00 0.00 3.55
2426 3515 5.804944 ATGAAGTCATGTAGAGGATCCAG 57.195 43.478 15.82 0.00 34.83 3.86
2582 3671 3.016736 CCTTGCTGATCCGGTAAACATT 58.983 45.455 0.00 0.00 0.00 2.71
2722 3813 4.201950 GGCTACATGTATGCTTGTTCTTGG 60.202 45.833 19.76 2.61 35.14 3.61
3492 4584 9.196552 CATGAATTTCGCTTGATAGAGTATGTA 57.803 33.333 0.00 0.00 0.00 2.29
3778 4875 1.610086 ACTCTCCTCTGCTGCTGCT 60.610 57.895 17.00 0.00 40.48 4.24
3840 4937 2.846652 CGTCGAGCCGGGCTTAGAT 61.847 63.158 24.71 0.00 39.88 1.98
3971 5075 1.669440 GTGGGCTGTTACCGACTCA 59.331 57.895 0.00 0.00 35.69 3.41
4039 5143 0.886043 GTTCGGCAACCCTAACCGTT 60.886 55.000 0.00 0.00 46.92 4.44
4389 5494 7.979537 AGATATGCGAGTTCTATGTTTTGTACA 59.020 33.333 0.00 0.00 41.97 2.90
4673 5778 6.183360 CCCTTGAACCTGTGAGAATTCTTTTT 60.183 38.462 9.87 0.00 0.00 1.94
4801 5906 0.951558 CAACGCTTAAAGTGCACCCT 59.048 50.000 14.63 3.01 0.00 4.34
4950 6055 8.039538 TCATGAGAGGAATGCTAGCAATATTAG 58.960 37.037 23.54 5.35 0.00 1.73
5041 6146 5.191727 TGAACAAGGTGAATGGGATGTAT 57.808 39.130 0.00 0.00 0.00 2.29
5091 6196 3.357079 CTTGCCGGTGTCAGCCAC 61.357 66.667 1.90 0.00 43.74 5.01
5137 6242 2.719354 GAAGTTGCCGCGGTTGTT 59.281 55.556 28.70 15.19 0.00 2.83
5138 6243 1.065109 GAAGTTGCCGCGGTTGTTT 59.935 52.632 28.70 16.35 0.00 2.83
5146 6251 1.532437 GCCGCGGTTGTTTAAGTAGTT 59.468 47.619 28.70 0.00 0.00 2.24
5147 6252 2.411935 GCCGCGGTTGTTTAAGTAGTTC 60.412 50.000 28.70 0.00 0.00 3.01
5156 6261 8.126700 CGGTTGTTTAAGTAGTTCAACAAAGAT 58.873 33.333 19.43 0.00 40.01 2.40
5506 6624 7.673641 TTAATTATCCATTCCAACCAGCAAT 57.326 32.000 0.00 0.00 0.00 3.56
5545 6663 5.883528 GACATAGGTCTGAGCTTGGCTCG 62.884 56.522 15.26 9.23 45.24 5.03
5718 6836 1.758280 CCATGCCATGCAACCATAGTT 59.242 47.619 0.00 0.00 43.62 2.24
5772 6890 9.908747 TTTTATATGGGCTAAAGCTACAAACTA 57.091 29.630 1.39 0.00 41.70 2.24
6142 7270 7.152645 TGTGACAGAACTATAGTGTCCTTTTC 58.847 38.462 6.06 0.00 39.96 2.29
6194 7322 7.530010 CCTTTTGACTACATGTTGGTATTGAG 58.470 38.462 2.30 0.00 0.00 3.02
6237 7365 1.784856 ACGCTATAAATACAGTGCGCG 59.215 47.619 0.00 0.00 46.03 6.86
6432 7560 3.198872 GTCCTTCCCAGCTCTTAAATCG 58.801 50.000 0.00 0.00 0.00 3.34
6669 7797 3.181467 TGCCCAACCATTATTGCAATAGC 60.181 43.478 18.13 15.39 42.57 2.97
6670 7798 8.321917 AATGCCCAACCATTATTGCAATAGCA 62.322 38.462 20.91 20.91 40.24 3.49
6694 7822 8.206516 CAGCAACATTTATTTGATGCAAAAAC 57.793 30.769 8.96 0.00 44.96 2.43
6699 7827 7.914465 ACATTTATTTGATGCAAAAACGTGTT 58.086 26.923 0.00 0.00 36.90 3.32
6700 7828 9.035607 ACATTTATTTGATGCAAAAACGTGTTA 57.964 25.926 0.00 0.00 36.90 2.41
6706 7834 4.502282 TGATGCAAAAACGTGTTAGCAAAG 59.498 37.500 9.53 0.00 35.45 2.77
6715 7843 5.493133 ACGTGTTAGCAAAGATTGAAACA 57.507 34.783 0.00 7.11 36.42 2.83
6724 7861 6.985117 AGCAAAGATTGAAACACATACATGT 58.015 32.000 2.69 2.69 42.84 3.21
6735 7872 3.557185 ACACATACATGTTAGCTGCATCG 59.443 43.478 2.30 0.00 39.39 3.84
6741 7878 3.065786 ACATGTTAGCTGCATCGATTTGG 59.934 43.478 1.02 0.00 0.00 3.28
6772 7909 1.016653 GGTGCTCGCTTTCTCAGGTC 61.017 60.000 0.00 0.00 0.00 3.85
6778 7915 1.699656 CGCTTTCTCAGGTCATGGCG 61.700 60.000 0.00 0.00 35.75 5.69
6799 7936 3.797256 CGATTACCGAGTCATCAAGGTTC 59.203 47.826 0.00 0.00 41.76 3.62
6811 7948 5.357878 GTCATCAAGGTTCCATGCATCTTTA 59.642 40.000 0.00 0.00 0.00 1.85
6909 8046 4.190001 TGTTCTACAAAACGCAAGGTACA 58.810 39.130 0.00 0.00 46.39 2.90
6910 8047 4.271533 TGTTCTACAAAACGCAAGGTACAG 59.728 41.667 0.00 0.00 46.39 2.74
6911 8048 4.325028 TCTACAAAACGCAAGGTACAGA 57.675 40.909 0.00 0.00 46.39 3.41
6912 8049 4.304110 TCTACAAAACGCAAGGTACAGAG 58.696 43.478 0.00 0.00 46.39 3.35
6913 8050 1.602377 ACAAAACGCAAGGTACAGAGC 59.398 47.619 0.00 0.00 46.39 4.09
6914 8051 1.873591 CAAAACGCAAGGTACAGAGCT 59.126 47.619 0.00 0.00 46.39 4.09
6915 8052 1.512926 AAACGCAAGGTACAGAGCTG 58.487 50.000 0.00 0.00 46.39 4.24
6916 8053 0.951040 AACGCAAGGTACAGAGCTGC 60.951 55.000 0.00 0.00 46.39 5.25
6917 8054 1.079543 CGCAAGGTACAGAGCTGCT 60.080 57.895 0.00 0.00 32.39 4.24
6918 8055 0.173481 CGCAAGGTACAGAGCTGCTA 59.827 55.000 0.15 0.00 32.39 3.49
6919 8056 1.646189 GCAAGGTACAGAGCTGCTAC 58.354 55.000 0.15 0.00 32.39 3.58
6933 8070 2.012673 CTGCTACCATTCTGGCAAGTC 58.987 52.381 0.00 0.00 42.67 3.01
6934 8071 1.009829 GCTACCATTCTGGCAAGTCG 58.990 55.000 0.00 0.00 42.67 4.18
6935 8072 1.656652 CTACCATTCTGGCAAGTCGG 58.343 55.000 0.00 0.00 42.67 4.79
6936 8073 0.981183 TACCATTCTGGCAAGTCGGT 59.019 50.000 4.61 4.61 42.67 4.69
6937 8074 0.981183 ACCATTCTGGCAAGTCGGTA 59.019 50.000 0.00 0.00 42.67 4.02
6938 8075 1.338769 ACCATTCTGGCAAGTCGGTAC 60.339 52.381 0.00 0.00 42.67 3.34
6939 8076 1.338674 CCATTCTGGCAAGTCGGTACA 60.339 52.381 0.00 0.00 0.00 2.90
6940 8077 1.732259 CATTCTGGCAAGTCGGTACAC 59.268 52.381 0.00 0.00 0.00 2.90
6941 8078 0.319211 TTCTGGCAAGTCGGTACACG 60.319 55.000 0.00 0.00 46.11 4.49
6942 8079 2.356553 TGGCAAGTCGGTACACGC 60.357 61.111 0.00 0.00 43.86 5.34
6943 8080 3.475774 GGCAAGTCGGTACACGCG 61.476 66.667 3.53 3.53 43.86 6.01
6944 8081 4.130281 GCAAGTCGGTACACGCGC 62.130 66.667 5.73 0.00 43.86 6.86
6945 8082 2.430244 CAAGTCGGTACACGCGCT 60.430 61.111 5.73 0.00 43.86 5.92
6946 8083 2.430244 AAGTCGGTACACGCGCTG 60.430 61.111 5.73 6.58 43.86 5.18
6947 8084 3.203546 AAGTCGGTACACGCGCTGT 62.204 57.895 5.73 12.81 43.86 4.40
6948 8085 1.855213 AAGTCGGTACACGCGCTGTA 61.855 55.000 5.73 11.71 43.86 2.74
6949 8086 1.442520 GTCGGTACACGCGCTGTAA 60.443 57.895 18.55 5.69 43.86 2.41
6950 8087 0.799534 GTCGGTACACGCGCTGTAAT 60.800 55.000 18.55 7.21 43.86 1.89
6954 8109 0.648958 GTACACGCGCTGTAATTCCC 59.351 55.000 18.55 6.80 37.09 3.97
6963 8118 3.304257 GCGCTGTAATTCCCATGATTCAG 60.304 47.826 0.00 0.00 0.00 3.02
6968 8123 6.528537 TGTAATTCCCATGATTCAGTTTGG 57.471 37.500 0.00 0.00 0.00 3.28
6971 8126 2.170166 TCCCATGATTCAGTTTGGCAC 58.830 47.619 0.00 0.00 0.00 5.01
6997 8153 4.275936 AGCTTCCAATCGCATAACATAACC 59.724 41.667 0.00 0.00 0.00 2.85
7003 8159 5.238432 CCAATCGCATAACATAACCTAGCAA 59.762 40.000 0.00 0.00 0.00 3.91
7018 8174 4.040952 ACCTAGCAATGCTACATCCCTTAG 59.959 45.833 11.40 0.00 40.44 2.18
7019 8175 4.284490 CCTAGCAATGCTACATCCCTTAGA 59.716 45.833 11.40 0.00 40.44 2.10
7020 8176 4.348863 AGCAATGCTACATCCCTTAGAG 57.651 45.455 5.69 0.00 36.99 2.43
7021 8177 3.713764 AGCAATGCTACATCCCTTAGAGT 59.286 43.478 5.69 0.00 36.99 3.24
7022 8178 4.164988 AGCAATGCTACATCCCTTAGAGTT 59.835 41.667 5.69 0.00 36.99 3.01
7023 8179 4.513318 GCAATGCTACATCCCTTAGAGTTC 59.487 45.833 0.00 0.00 0.00 3.01
7024 8180 4.592485 ATGCTACATCCCTTAGAGTTCG 57.408 45.455 0.00 0.00 0.00 3.95
7027 8183 4.222145 TGCTACATCCCTTAGAGTTCGTTT 59.778 41.667 0.00 0.00 0.00 3.60
7028 8184 4.804665 GCTACATCCCTTAGAGTTCGTTTC 59.195 45.833 0.00 0.00 0.00 2.78
7029 8185 4.203654 ACATCCCTTAGAGTTCGTTTCC 57.796 45.455 0.00 0.00 0.00 3.13
7030 8186 3.838903 ACATCCCTTAGAGTTCGTTTCCT 59.161 43.478 0.00 0.00 0.00 3.36
7031 8187 3.955650 TCCCTTAGAGTTCGTTTCCTG 57.044 47.619 0.00 0.00 0.00 3.86
7032 8188 3.503365 TCCCTTAGAGTTCGTTTCCTGA 58.497 45.455 0.00 0.00 0.00 3.86
7033 8189 3.899360 TCCCTTAGAGTTCGTTTCCTGAA 59.101 43.478 0.00 0.00 0.00 3.02
7034 8190 4.530946 TCCCTTAGAGTTCGTTTCCTGAAT 59.469 41.667 0.00 0.00 0.00 2.57
7035 8191 5.012768 TCCCTTAGAGTTCGTTTCCTGAATT 59.987 40.000 0.00 0.00 0.00 2.17
7036 8192 6.211986 TCCCTTAGAGTTCGTTTCCTGAATTA 59.788 38.462 0.00 0.00 0.00 1.40
7037 8193 6.535508 CCCTTAGAGTTCGTTTCCTGAATTAG 59.464 42.308 0.00 0.00 0.00 1.73
7041 8197 9.985730 TTAGAGTTCGTTTCCTGAATTAGTTAA 57.014 29.630 0.00 0.00 0.00 2.01
7174 8330 1.746516 GCCCCTGCTCTCAGATTCTTG 60.747 57.143 0.00 0.00 42.95 3.02
7196 8352 1.599542 GCGATGTGGTCTGGAAATAGC 59.400 52.381 0.00 0.00 0.00 2.97
7197 8353 2.743183 GCGATGTGGTCTGGAAATAGCT 60.743 50.000 0.00 0.00 0.00 3.32
7210 8366 3.560882 GGAAATAGCTGCTAGGATGCCAT 60.561 47.826 15.41 0.00 0.00 4.40
7231 8387 2.286713 TGCCGTGACGAGAATTTTGTTG 60.287 45.455 6.54 0.00 0.00 3.33
7236 8392 4.142364 CGTGACGAGAATTTTGTTGTTTCG 59.858 41.667 0.00 0.00 0.00 3.46
7243 8399 6.139169 CGAGAATTTTGTTGTTTCGTCTGAAG 59.861 38.462 0.00 0.00 35.06 3.02
7277 8433 1.212751 GGCGGCACTCAAATTGTCC 59.787 57.895 3.07 0.00 0.00 4.02
7289 8445 5.199024 TCAAATTGTCCAGAAATGTGGTG 57.801 39.130 0.00 0.00 38.88 4.17
7291 8447 1.993956 TTGTCCAGAAATGTGGTGGG 58.006 50.000 0.00 0.00 38.88 4.61
7327 8483 0.625849 AAACCCAGCAGGATACCAGG 59.374 55.000 0.00 0.00 39.89 4.45
7344 8500 1.577736 AGGCTGTTCAGGCTGTAGAT 58.422 50.000 24.22 3.35 43.35 1.98
7345 8501 1.484240 AGGCTGTTCAGGCTGTAGATC 59.516 52.381 24.22 0.00 43.35 2.75
7346 8502 1.484240 GGCTGTTCAGGCTGTAGATCT 59.516 52.381 15.27 0.00 0.00 2.75
7347 8503 2.548875 GCTGTTCAGGCTGTAGATCTG 58.451 52.381 15.27 6.95 0.00 2.90
7348 8504 2.548875 CTGTTCAGGCTGTAGATCTGC 58.451 52.381 15.27 4.30 39.71 4.26
7349 8505 2.168106 CTGTTCAGGCTGTAGATCTGCT 59.832 50.000 15.27 0.00 40.19 4.24
7350 8506 2.568956 TGTTCAGGCTGTAGATCTGCTT 59.431 45.455 15.27 0.00 40.19 3.91
7351 8507 3.194062 GTTCAGGCTGTAGATCTGCTTC 58.806 50.000 15.27 3.69 40.19 3.86
7352 8508 2.460669 TCAGGCTGTAGATCTGCTTCA 58.539 47.619 15.27 2.59 40.19 3.02
7353 8509 2.429971 TCAGGCTGTAGATCTGCTTCAG 59.570 50.000 15.27 12.00 42.86 3.02
7359 8515 5.467902 CTGTAGATCTGCTTCAGCTTTTC 57.532 43.478 12.30 0.00 42.66 2.29
7360 8516 4.898320 TGTAGATCTGCTTCAGCTTTTCA 58.102 39.130 12.30 0.00 42.66 2.69
7363 8519 2.238942 TCTGCTTCAGCTTTTCACGA 57.761 45.000 0.00 0.00 42.66 4.35
7374 8530 4.023193 CAGCTTTTCACGATTGGTAGGTTT 60.023 41.667 0.00 0.00 0.00 3.27
7377 8533 5.401376 GCTTTTCACGATTGGTAGGTTTTTC 59.599 40.000 0.00 0.00 0.00 2.29
7383 8539 7.586747 TCACGATTGGTAGGTTTTTCAATAAC 58.413 34.615 0.00 0.00 30.97 1.89
7450 8609 4.188462 GGACAATCCATGATCGTGTTGTA 58.812 43.478 18.71 2.51 36.28 2.41
7453 8612 5.674525 ACAATCCATGATCGTGTTGTATCT 58.325 37.500 17.73 0.00 0.00 1.98
7456 8615 4.682787 TCCATGATCGTGTTGTATCTGTC 58.317 43.478 13.81 0.00 0.00 3.51
7464 8623 2.096417 GTGTTGTATCTGTCGGTGCAAC 60.096 50.000 0.00 0.00 37.36 4.17
7481 8640 1.796459 CAACCGTCGAGTTTAACCCTG 59.204 52.381 0.00 0.00 0.00 4.45
7484 8643 2.827921 ACCGTCGAGTTTAACCCTGTAT 59.172 45.455 0.00 0.00 0.00 2.29
7499 8658 4.218417 ACCCTGTATTTGTCATGAAACAGC 59.782 41.667 0.00 0.00 34.41 4.40
7520 8679 3.608073 GCGCATTTCTAAACGAAGCAAAT 59.392 39.130 0.30 0.00 32.21 2.32
7540 8699 3.278668 TCCGTTGTTTTCAGTGGGTAA 57.721 42.857 0.00 0.00 0.00 2.85
7621 8782 0.961857 TGTGATGTGGCTGTGGCATC 60.962 55.000 0.00 0.00 40.92 3.91
7679 8840 1.134280 CAGGTACCCATCTGAAGGCTG 60.134 57.143 8.74 0.00 33.11 4.85
7698 8859 3.427503 GCTGTATTTGCACAACCGCTAAT 60.428 43.478 0.00 0.00 39.91 1.73
7751 8913 7.499321 AAACCACTCGTATTGTTGTTCATAA 57.501 32.000 0.00 0.00 0.00 1.90
7754 8916 7.581476 ACCACTCGTATTGTTGTTCATAAAAG 58.419 34.615 0.00 0.00 0.00 2.27
7755 8917 7.227910 ACCACTCGTATTGTTGTTCATAAAAGT 59.772 33.333 0.00 0.00 0.00 2.66
7836 8998 3.636231 CGCACCCCACCTTCCTCA 61.636 66.667 0.00 0.00 0.00 3.86
7837 8999 2.843545 GCACCCCACCTTCCTCAA 59.156 61.111 0.00 0.00 0.00 3.02
7838 9000 1.303643 GCACCCCACCTTCCTCAAG 60.304 63.158 0.00 0.00 0.00 3.02
7845 9007 3.170362 CCTTCCTCAAGGTGGCCA 58.830 61.111 0.00 0.00 44.11 5.36
7846 9008 1.303643 CCTTCCTCAAGGTGGCCAC 60.304 63.158 28.57 28.57 44.11 5.01
7847 9009 1.763770 CTTCCTCAAGGTGGCCACT 59.236 57.895 33.91 18.03 36.34 4.00
7878 9054 4.307432 CCGTGTACATCTCTGTGAAAAGT 58.693 43.478 0.00 0.00 36.79 2.66
8025 9212 4.142038 TGTAAAGCCTTTTCCTTCTGGTC 58.858 43.478 0.00 0.00 34.23 4.02
8090 9278 9.765795 ATTACAGTATCCTTGATGCTAAAGTAC 57.234 33.333 0.00 0.00 33.49 2.73
8091 9279 7.425224 ACAGTATCCTTGATGCTAAAGTACT 57.575 36.000 0.00 0.00 33.49 2.73
8092 9280 8.534954 ACAGTATCCTTGATGCTAAAGTACTA 57.465 34.615 0.00 0.00 33.49 1.82
8093 9281 8.414778 ACAGTATCCTTGATGCTAAAGTACTAC 58.585 37.037 0.00 0.00 33.49 2.73
8094 9282 8.634444 CAGTATCCTTGATGCTAAAGTACTACT 58.366 37.037 0.00 0.00 33.49 2.57
8095 9283 8.852135 AGTATCCTTGATGCTAAAGTACTACTC 58.148 37.037 0.00 0.00 33.49 2.59
8096 9284 6.466885 TCCTTGATGCTAAAGTACTACTCC 57.533 41.667 0.00 0.00 0.00 3.85
8097 9285 5.067413 TCCTTGATGCTAAAGTACTACTCCG 59.933 44.000 0.00 0.00 0.00 4.63
8098 9286 5.067413 CCTTGATGCTAAAGTACTACTCCGA 59.933 44.000 0.00 0.00 0.00 4.55
8099 9287 5.496133 TGATGCTAAAGTACTACTCCGAC 57.504 43.478 0.00 0.00 0.00 4.79
8100 9288 4.034858 TGATGCTAAAGTACTACTCCGACG 59.965 45.833 0.00 0.00 0.00 5.12
8101 9289 2.679837 TGCTAAAGTACTACTCCGACGG 59.320 50.000 7.84 7.84 0.00 4.79
8102 9290 2.939103 GCTAAAGTACTACTCCGACGGA 59.061 50.000 17.28 17.28 0.00 4.69
8110 9298 3.522731 CTCCGACGGAGGGAGCAG 61.523 72.222 32.26 9.25 45.43 4.24
8113 9301 3.842923 CGACGGAGGGAGCAGCAT 61.843 66.667 0.00 0.00 0.00 3.79
8114 9302 2.490148 CGACGGAGGGAGCAGCATA 61.490 63.158 0.00 0.00 0.00 3.14
8115 9303 1.068250 GACGGAGGGAGCAGCATAC 59.932 63.158 0.00 0.00 0.00 2.39
8116 9304 1.676678 GACGGAGGGAGCAGCATACA 61.677 60.000 0.00 0.00 0.00 2.29
8117 9305 1.050988 ACGGAGGGAGCAGCATACAT 61.051 55.000 0.00 0.00 0.00 2.29
8118 9306 0.602106 CGGAGGGAGCAGCATACATG 60.602 60.000 0.00 0.00 0.00 3.21
8119 9307 0.250640 GGAGGGAGCAGCATACATGG 60.251 60.000 0.00 0.00 0.00 3.66
8120 9308 0.471617 GAGGGAGCAGCATACATGGT 59.528 55.000 0.00 0.00 39.42 3.55
8127 9315 3.963733 AGCATACATGGTGCACACT 57.036 47.368 20.43 1.25 44.87 3.55
8128 9316 1.742761 AGCATACATGGTGCACACTC 58.257 50.000 20.43 1.36 44.87 3.51
8129 9317 1.003464 AGCATACATGGTGCACACTCA 59.997 47.619 20.43 8.04 44.87 3.41
8130 9318 2.019249 GCATACATGGTGCACACTCAT 58.981 47.619 20.43 10.22 42.08 2.90
8131 9319 2.223409 GCATACATGGTGCACACTCATG 60.223 50.000 24.37 24.37 42.08 3.07
8132 9320 2.112380 TACATGGTGCACACTCATGG 57.888 50.000 27.42 15.66 40.77 3.66
8133 9321 0.111061 ACATGGTGCACACTCATGGT 59.889 50.000 27.42 16.12 40.77 3.55
8144 9332 2.708051 CACTCATGGTGCACAATCTCT 58.292 47.619 20.43 0.00 39.22 3.10
8145 9333 3.079578 CACTCATGGTGCACAATCTCTT 58.920 45.455 20.43 0.00 39.22 2.85
8146 9334 3.504906 CACTCATGGTGCACAATCTCTTT 59.495 43.478 20.43 0.00 39.22 2.52
8147 9335 4.022589 CACTCATGGTGCACAATCTCTTTT 60.023 41.667 20.43 0.00 39.22 2.27
8148 9336 4.586001 ACTCATGGTGCACAATCTCTTTTT 59.414 37.500 20.43 0.00 0.00 1.94
8149 9337 5.125100 TCATGGTGCACAATCTCTTTTTC 57.875 39.130 20.43 0.00 0.00 2.29
8150 9338 4.583907 TCATGGTGCACAATCTCTTTTTCA 59.416 37.500 20.43 2.66 0.00 2.69
8151 9339 4.305989 TGGTGCACAATCTCTTTTTCAC 57.694 40.909 20.43 0.00 0.00 3.18
8152 9340 3.698539 TGGTGCACAATCTCTTTTTCACA 59.301 39.130 20.43 0.00 0.00 3.58
8153 9341 4.341806 TGGTGCACAATCTCTTTTTCACAT 59.658 37.500 20.43 0.00 0.00 3.21
8154 9342 5.163426 TGGTGCACAATCTCTTTTTCACATT 60.163 36.000 20.43 0.00 0.00 2.71
8155 9343 5.403466 GGTGCACAATCTCTTTTTCACATTC 59.597 40.000 20.43 0.00 0.00 2.67
8156 9344 5.978919 GTGCACAATCTCTTTTTCACATTCA 59.021 36.000 13.17 0.00 0.00 2.57
8157 9345 6.643770 GTGCACAATCTCTTTTTCACATTCAT 59.356 34.615 13.17 0.00 0.00 2.57
8158 9346 6.643360 TGCACAATCTCTTTTTCACATTCATG 59.357 34.615 0.00 0.00 0.00 3.07
8159 9347 6.864685 GCACAATCTCTTTTTCACATTCATGA 59.135 34.615 0.00 0.00 0.00 3.07
8160 9348 7.383029 GCACAATCTCTTTTTCACATTCATGAA 59.617 33.333 11.26 11.26 36.80 2.57
8161 9349 9.419297 CACAATCTCTTTTTCACATTCATGAAT 57.581 29.630 15.36 15.36 38.37 2.57
8171 9359 9.978044 TTTTCACATTCATGAATAAACATCACA 57.022 25.926 20.32 0.32 38.37 3.58
8172 9360 8.969121 TTCACATTCATGAATAAACATCACAC 57.031 30.769 20.32 0.00 33.62 3.82
8173 9361 8.108551 TCACATTCATGAATAAACATCACACA 57.891 30.769 20.32 0.00 0.00 3.72
8174 9362 8.238631 TCACATTCATGAATAAACATCACACAG 58.761 33.333 20.32 6.35 0.00 3.66
8175 9363 7.008901 CACATTCATGAATAAACATCACACAGC 59.991 37.037 20.32 0.00 0.00 4.40
8176 9364 5.565592 TCATGAATAAACATCACACAGCC 57.434 39.130 0.00 0.00 0.00 4.85
8177 9365 5.255687 TCATGAATAAACATCACACAGCCT 58.744 37.500 0.00 0.00 0.00 4.58
8178 9366 6.413892 TCATGAATAAACATCACACAGCCTA 58.586 36.000 0.00 0.00 0.00 3.93
8179 9367 7.056006 TCATGAATAAACATCACACAGCCTAT 58.944 34.615 0.00 0.00 0.00 2.57
8180 9368 7.557358 TCATGAATAAACATCACACAGCCTATT 59.443 33.333 0.00 0.00 0.00 1.73
8181 9369 7.087409 TGAATAAACATCACACAGCCTATTG 57.913 36.000 0.00 0.00 0.00 1.90
8182 9370 6.658816 TGAATAAACATCACACAGCCTATTGT 59.341 34.615 0.00 0.00 0.00 2.71
8183 9371 6.683974 ATAAACATCACACAGCCTATTGTC 57.316 37.500 0.00 0.00 0.00 3.18
8184 9372 3.701205 ACATCACACAGCCTATTGTCA 57.299 42.857 0.00 0.00 0.00 3.58
8185 9373 4.019792 ACATCACACAGCCTATTGTCAA 57.980 40.909 0.00 0.00 0.00 3.18
8186 9374 4.005650 ACATCACACAGCCTATTGTCAAG 58.994 43.478 0.00 0.00 0.00 3.02
8187 9375 4.256110 CATCACACAGCCTATTGTCAAGA 58.744 43.478 0.00 0.00 0.00 3.02
8188 9376 4.558226 TCACACAGCCTATTGTCAAGAT 57.442 40.909 0.00 0.00 0.00 2.40
8189 9377 4.256110 TCACACAGCCTATTGTCAAGATG 58.744 43.478 0.00 0.00 0.00 2.90
8190 9378 4.005650 CACACAGCCTATTGTCAAGATGT 58.994 43.478 0.00 0.00 0.00 3.06
8191 9379 4.456911 CACACAGCCTATTGTCAAGATGTT 59.543 41.667 0.00 0.00 0.00 2.71
8192 9380 5.048504 CACACAGCCTATTGTCAAGATGTTT 60.049 40.000 0.00 0.00 0.00 2.83
8193 9381 5.182001 ACACAGCCTATTGTCAAGATGTTTC 59.818 40.000 0.00 0.00 0.00 2.78
8194 9382 5.413833 CACAGCCTATTGTCAAGATGTTTCT 59.586 40.000 0.00 0.00 0.00 2.52
8195 9383 6.006449 ACAGCCTATTGTCAAGATGTTTCTT 58.994 36.000 0.00 0.00 43.09 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.065371 GGCCACTTATCACGAAAAGATGG 59.935 47.826 0.00 0.00 32.08 3.51
12 13 2.368439 TGCAATCAGGCCACTTATCAC 58.632 47.619 5.01 0.00 0.00 3.06
50 51 7.147880 GGGGCTCATGTACCTACAGTATTATAG 60.148 44.444 6.70 0.00 39.92 1.31
52 53 5.484290 GGGGCTCATGTACCTACAGTATTAT 59.516 44.000 6.70 0.00 39.92 1.28
53 54 4.836736 GGGGCTCATGTACCTACAGTATTA 59.163 45.833 6.70 0.00 39.92 0.98
55 56 3.240302 GGGGCTCATGTACCTACAGTAT 58.760 50.000 6.70 0.00 39.92 2.12
60 61 0.104304 CACGGGGCTCATGTACCTAC 59.896 60.000 6.70 1.10 0.00 3.18
64 65 1.144057 CTCCACGGGGCTCATGTAC 59.856 63.158 0.00 0.00 0.00 2.90
65 66 0.616395 TTCTCCACGGGGCTCATGTA 60.616 55.000 0.00 0.00 0.00 2.29
68 69 1.604378 CTTTCTCCACGGGGCTCAT 59.396 57.895 0.00 0.00 0.00 2.90
103 104 8.734386 CATTCTCAGGCTTTATTAGTTCAAAGT 58.266 33.333 0.00 0.00 34.82 2.66
142 143 6.485984 TCGGTTTGGCTTGTAAAAGTATGTTA 59.514 34.615 0.00 0.00 0.00 2.41
169 170 7.222417 TGAACTTTCGTACTCGTTTCATTGTTA 59.778 33.333 0.00 0.00 38.33 2.41
181 182 8.111224 GCTATTGATCTTTGAACTTTCGTACTC 58.889 37.037 0.00 0.00 0.00 2.59
193 194 7.386059 TCTAGTTGTGTGCTATTGATCTTTGA 58.614 34.615 0.00 0.00 0.00 2.69
194 195 7.601073 TCTAGTTGTGTGCTATTGATCTTTG 57.399 36.000 0.00 0.00 0.00 2.77
200 201 9.371136 CTTTCTTATCTAGTTGTGTGCTATTGA 57.629 33.333 0.00 0.00 0.00 2.57
201 202 9.371136 TCTTTCTTATCTAGTTGTGTGCTATTG 57.629 33.333 0.00 0.00 0.00 1.90
229 237 4.976224 TGCCATCAACATCTTTCATCTG 57.024 40.909 0.00 0.00 0.00 2.90
233 241 6.014755 TGGTTAATTGCCATCAACATCTTTCA 60.015 34.615 0.13 0.00 34.60 2.69
248 256 2.880890 AGCTGATCGGATGGTTAATTGC 59.119 45.455 5.48 0.00 0.00 3.56
249 257 5.702670 ACATAGCTGATCGGATGGTTAATTG 59.297 40.000 5.48 0.00 0.00 2.32
250 258 5.869579 ACATAGCTGATCGGATGGTTAATT 58.130 37.500 5.48 0.00 0.00 1.40
279 287 2.905736 TCATGTGTGAGGAGATCCACAA 59.094 45.455 0.24 0.00 43.84 3.33
281 289 3.133542 TCATCATGTGTGAGGAGATCCAC 59.866 47.826 0.92 0.00 39.98 4.02
292 300 6.872628 ATAACCTAGCAATCATCATGTGTG 57.127 37.500 0.00 0.00 0.00 3.82
328 336 6.149807 GGACCAAAATACGAAATACTCCAACA 59.850 38.462 0.00 0.00 0.00 3.33
334 342 7.610305 AGAACATGGACCAAAATACGAAATACT 59.390 33.333 0.00 0.00 0.00 2.12
337 345 6.432783 TGAGAACATGGACCAAAATACGAAAT 59.567 34.615 0.00 0.00 0.00 2.17
339 347 5.309638 TGAGAACATGGACCAAAATACGAA 58.690 37.500 0.00 0.00 0.00 3.85
340 348 4.900684 TGAGAACATGGACCAAAATACGA 58.099 39.130 0.00 0.00 0.00 3.43
341 349 5.818136 ATGAGAACATGGACCAAAATACG 57.182 39.130 0.00 0.00 35.21 3.06
349 661 4.636206 GGAGTTTGTATGAGAACATGGACC 59.364 45.833 0.00 0.00 37.87 4.46
373 685 6.035975 CCAACAAGTCCAAGAACATCAAAAAC 59.964 38.462 0.00 0.00 0.00 2.43
380 692 5.363580 ACAAATCCAACAAGTCCAAGAACAT 59.636 36.000 0.00 0.00 0.00 2.71
394 706 2.354821 GGCTCGTCCATACAAATCCAAC 59.645 50.000 0.00 0.00 34.01 3.77
402 714 1.694844 TTATCGGGCTCGTCCATACA 58.305 50.000 5.57 0.00 37.69 2.29
457 769 5.238650 ACAGATTCGACAAAACGGAATTTCT 59.761 36.000 0.00 0.00 0.00 2.52
458 770 5.449304 ACAGATTCGACAAAACGGAATTTC 58.551 37.500 0.00 0.00 0.00 2.17
462 774 3.459145 TGACAGATTCGACAAAACGGAA 58.541 40.909 0.00 0.00 0.00 4.30
463 775 3.100658 TGACAGATTCGACAAAACGGA 57.899 42.857 0.00 0.00 0.00 4.69
464 776 3.870723 TTGACAGATTCGACAAAACGG 57.129 42.857 0.00 0.00 0.00 4.44
466 778 4.036380 ACCCTTTGACAGATTCGACAAAAC 59.964 41.667 0.00 0.00 33.05 2.43
479 791 2.906389 ACTGCATCTAGACCCTTTGACA 59.094 45.455 0.00 0.00 0.00 3.58
492 804 4.823989 AGAAAAGTTACAAGCACTGCATCT 59.176 37.500 3.30 0.00 0.00 2.90
532 844 9.449719 CCATAGACTTAACACACTAAAGGAATT 57.550 33.333 0.00 0.00 0.00 2.17
543 856 6.428083 TGAAACTCCCATAGACTTAACACA 57.572 37.500 0.00 0.00 0.00 3.72
554 867 3.737559 AGGTGCAATGAAACTCCCATA 57.262 42.857 0.00 0.00 0.00 2.74
559 872 3.146066 TGGTGTAGGTGCAATGAAACTC 58.854 45.455 0.00 0.00 0.00 3.01
565 878 3.255395 TCATTGTTGGTGTAGGTGCAATG 59.745 43.478 0.00 0.00 42.36 2.82
567 880 2.937519 TCATTGTTGGTGTAGGTGCAA 58.062 42.857 0.00 0.00 0.00 4.08
576 889 8.200364 AGTTTTTCTTGATTTCATTGTTGGTG 57.800 30.769 0.00 0.00 0.00 4.17
634 947 8.934825 CATGATTTATGGTTTCCGAACATTTTT 58.065 29.630 0.00 0.00 37.51 1.94
641 954 5.850557 ATGCATGATTTATGGTTTCCGAA 57.149 34.783 0.00 0.00 37.26 4.30
669 982 5.300034 TGATCCATGTATCCACTTTTCATGC 59.700 40.000 0.00 0.00 35.85 4.06
678 991 6.990939 CCTCATATCATGATCCATGTATCCAC 59.009 42.308 12.53 0.00 41.98 4.02
682 995 7.520797 AACCCTCATATCATGATCCATGTAT 57.479 36.000 12.53 0.00 41.98 2.29
695 1008 6.024552 TGTTGCTTCAAAAACCCTCATATC 57.975 37.500 0.00 0.00 0.00 1.63
706 1019 3.128589 AGAGCTCGTTTGTTGCTTCAAAA 59.871 39.130 8.37 0.00 38.71 2.44
744 1057 9.816787 AACCTATAAGTTTAATTGGGACTGAAA 57.183 29.630 0.00 0.00 0.00 2.69
747 1060 8.837389 GCTAACCTATAAGTTTAATTGGGACTG 58.163 37.037 0.00 0.00 0.00 3.51
845 1920 9.665719 ACATCTACCACTTTGAAATTTGTTTTT 57.334 25.926 0.00 0.00 0.00 1.94
846 1921 9.665719 AACATCTACCACTTTGAAATTTGTTTT 57.334 25.926 0.00 0.00 0.00 2.43
850 1925 6.146021 GCCAACATCTACCACTTTGAAATTTG 59.854 38.462 0.00 0.00 0.00 2.32
853 1928 5.047802 CAGCCAACATCTACCACTTTGAAAT 60.048 40.000 0.00 0.00 0.00 2.17
861 1936 7.573843 GCAATTATATCAGCCAACATCTACCAC 60.574 40.741 0.00 0.00 0.00 4.16
863 1938 6.430925 TGCAATTATATCAGCCAACATCTACC 59.569 38.462 0.00 0.00 0.00 3.18
865 1940 9.387257 CTATGCAATTATATCAGCCAACATCTA 57.613 33.333 0.00 0.00 0.00 1.98
866 1941 7.148120 GCTATGCAATTATATCAGCCAACATCT 60.148 37.037 0.00 0.00 0.00 2.90
867 1942 6.971184 GCTATGCAATTATATCAGCCAACATC 59.029 38.462 0.00 0.00 0.00 3.06
869 1944 6.005823 AGCTATGCAATTATATCAGCCAACA 58.994 36.000 0.00 0.00 0.00 3.33
870 1945 6.320171 CAGCTATGCAATTATATCAGCCAAC 58.680 40.000 0.00 0.00 0.00 3.77
871 1946 6.505044 CAGCTATGCAATTATATCAGCCAA 57.495 37.500 0.00 0.00 0.00 4.52
898 1973 3.609853 TGAATCGGGAATGTGAAGAAGG 58.390 45.455 0.00 0.00 0.00 3.46
930 2006 3.120199 ACGAATTGGCAATCTTTGTCTCG 60.120 43.478 20.46 20.46 35.94 4.04
933 2009 6.305638 GTCTTTACGAATTGGCAATCTTTGTC 59.694 38.462 14.04 6.00 35.37 3.18
935 2011 5.572896 GGTCTTTACGAATTGGCAATCTTTG 59.427 40.000 14.04 6.23 0.00 2.77
943 2019 3.119955 GGTTCAGGTCTTTACGAATTGGC 60.120 47.826 0.00 0.00 0.00 4.52
945 2021 4.069304 TGGGTTCAGGTCTTTACGAATTG 58.931 43.478 0.00 0.00 0.00 2.32
969 2045 3.646715 CTCTTGGGTTGGCCGGGA 61.647 66.667 2.18 0.00 34.97 5.14
1005 2081 2.889200 CGTAGGGTTCAGGAGAGCT 58.111 57.895 0.00 0.00 0.00 4.09
1553 2629 0.040425 GCGTGCATTCGGTTCTTGTT 60.040 50.000 0.00 0.00 0.00 2.83
1561 2637 2.440501 GAGTAAAATGCGTGCATTCGG 58.559 47.619 19.40 0.00 44.86 4.30
1810 2898 0.464452 AGCACTATTAGCGTGTCCCC 59.536 55.000 0.00 0.00 37.01 4.81
1991 3080 3.799755 GCGTCGGTTCACCATGGC 61.800 66.667 13.04 0.00 35.14 4.40
2126 3215 5.708230 AGGTCCTATAAACAACGAATGCAAA 59.292 36.000 0.00 0.00 0.00 3.68
2162 3251 4.804139 CGACTCCATTGACAGGTACAATAC 59.196 45.833 0.00 0.00 36.40 1.89
2280 3369 1.629861 TGATTGGACAGCTGATGGTGA 59.370 47.619 23.35 1.07 43.76 4.02
2426 3515 2.056094 GCAACAAGCATGACCAGAAC 57.944 50.000 0.00 0.00 44.79 3.01
2722 3813 3.174375 GCGAATGAAGAAAATGGCAGTC 58.826 45.455 0.00 0.00 0.00 3.51
3336 4428 1.134128 TGTATGCCCCTGTGCAGTATG 60.134 52.381 0.00 0.00 45.93 2.39
3625 4719 1.068434 GCAACAAGTAGGCCTTTGCAA 59.932 47.619 26.85 0.00 37.04 4.08
3627 4721 0.673437 TGCAACAAGTAGGCCTTTGC 59.327 50.000 25.65 25.65 37.40 3.68
3778 4875 4.451150 GGCATGACGAGACGGGCA 62.451 66.667 0.00 0.00 0.00 5.36
3784 4881 0.612744 TGTTCCATGGCATGACGAGA 59.387 50.000 28.43 14.02 0.00 4.04
3920 5024 3.244630 ACCGGAAATGGCTGTTACTAACA 60.245 43.478 9.46 1.67 39.52 2.41
4039 5143 2.965831 GGTAGATGCACTCTGATGGGTA 59.034 50.000 8.40 0.00 35.28 3.69
4329 5434 6.692249 CGCATAAATAGCATTCACATGAACAA 59.308 34.615 0.00 0.00 36.80 2.83
4330 5435 6.038050 TCGCATAAATAGCATTCACATGAACA 59.962 34.615 0.00 0.00 36.80 3.18
4389 5494 5.069251 ACTCTAAACTAGGCATGCGAGTTAT 59.931 40.000 27.37 20.89 33.13 1.89
4576 5681 4.925646 GGTTCTCATTTGCCAAAGCTTAAG 59.074 41.667 0.00 0.00 40.80 1.85
4770 5875 2.378445 AAGCGTTGGCAAACAAAACT 57.622 40.000 0.00 0.00 41.58 2.66
4801 5906 6.183360 TGCTCTGAAACCGAATCCATATAAGA 60.183 38.462 0.00 0.00 0.00 2.10
4932 6037 7.678947 ATGTGACTAATATTGCTAGCATTCC 57.321 36.000 20.13 4.26 0.00 3.01
4950 6055 6.415280 CGCATGACTAGTTTAGAGTATGTGAC 59.585 42.308 0.00 0.00 32.19 3.67
5032 6137 3.392730 TCCAACCAGATCATACATCCCA 58.607 45.455 0.00 0.00 0.00 4.37
5041 6146 0.321564 CAGCCGTTCCAACCAGATCA 60.322 55.000 0.00 0.00 0.00 2.92
5091 6196 1.927174 CCGACTTTACCGATCTTGCTG 59.073 52.381 0.00 0.00 0.00 4.41
5137 6242 6.147164 CGGCTCATCTTTGTTGAACTACTTAA 59.853 38.462 0.00 0.00 0.00 1.85
5138 6243 5.637810 CGGCTCATCTTTGTTGAACTACTTA 59.362 40.000 0.00 0.00 0.00 2.24
5146 6251 2.688507 GTCTCGGCTCATCTTTGTTGA 58.311 47.619 0.00 0.00 0.00 3.18
5147 6252 1.391485 CGTCTCGGCTCATCTTTGTTG 59.609 52.381 0.00 0.00 0.00 3.33
5421 6535 9.442047 AATAACAAACATTTCCAACTTGTTCAA 57.558 25.926 2.04 0.00 39.97 2.69
5501 6619 4.390603 TCGAGTGTGCGTTTTATAATTGCT 59.609 37.500 0.00 0.00 0.00 3.91
5506 6624 5.517411 CCTATGTCGAGTGTGCGTTTTATAA 59.483 40.000 0.00 0.00 0.00 0.98
5545 6663 1.131315 GTTTCATGAAAGAGCCGAGCC 59.869 52.381 21.05 2.72 0.00 4.70
5546 6664 1.806542 TGTTTCATGAAAGAGCCGAGC 59.193 47.619 21.05 7.56 0.00 5.03
5547 6665 3.438087 ACATGTTTCATGAAAGAGCCGAG 59.562 43.478 21.05 10.87 0.00 4.63
5548 6666 3.189080 CACATGTTTCATGAAAGAGCCGA 59.811 43.478 21.05 0.00 0.00 5.54
5549 6667 3.495193 CACATGTTTCATGAAAGAGCCG 58.505 45.455 21.05 14.11 0.00 5.52
5718 6836 4.601857 ACTCCCAGGAAATCTTAAAGGACA 59.398 41.667 0.00 0.00 0.00 4.02
6030 7158 5.127519 TGAATACTCATTTGGGCATTTCAGG 59.872 40.000 0.00 0.00 0.00 3.86
6142 7270 3.127589 TGACCAACATGTAGTCACAACG 58.872 45.455 21.62 0.00 38.42 4.10
6237 7365 2.028112 TGCTTCCTACATCACTGTGGAC 60.028 50.000 8.11 0.00 36.01 4.02
6432 7560 1.324383 TTTGGTCTTTCCCGAAAGCC 58.676 50.000 11.56 14.75 45.48 4.35
6579 7707 4.697514 TCTTGCATAAGCTCATGTACTCC 58.302 43.478 0.00 0.00 42.74 3.85
6669 7797 7.058580 CGTTTTTGCATCAAATAAATGTTGCTG 59.941 33.333 10.56 0.00 43.28 4.41
6670 7798 7.070798 CGTTTTTGCATCAAATAAATGTTGCT 58.929 30.769 10.56 0.00 43.28 3.91
6694 7822 5.270083 TGTGTTTCAATCTTTGCTAACACG 58.730 37.500 20.40 0.00 46.70 4.49
6699 7827 8.109705 ACATGTATGTGTTTCAATCTTTGCTA 57.890 30.769 0.00 0.00 40.03 3.49
6700 7828 6.985117 ACATGTATGTGTTTCAATCTTTGCT 58.015 32.000 0.00 0.00 40.03 3.91
6706 7834 6.470235 GCAGCTAACATGTATGTGTTTCAATC 59.530 38.462 0.00 0.00 42.08 2.67
6715 7843 4.058721 TCGATGCAGCTAACATGTATGT 57.941 40.909 0.00 0.00 44.20 2.29
6724 7861 2.984562 TGACCAAATCGATGCAGCTAA 58.015 42.857 0.00 0.00 0.00 3.09
6735 7872 1.895131 ACCCACAAGCATGACCAAATC 59.105 47.619 0.00 0.00 0.00 2.17
6741 7878 1.878775 GAGCACCCACAAGCATGAC 59.121 57.895 0.00 0.00 0.00 3.06
6772 7909 2.061773 GATGACTCGGTAATCGCCATG 58.938 52.381 0.00 0.00 39.05 3.66
6778 7915 4.120589 GGAACCTTGATGACTCGGTAATC 58.879 47.826 0.00 0.00 0.00 1.75
6799 7936 5.361857 ACCATCCTTCTTTAAAGATGCATGG 59.638 40.000 32.79 32.79 46.33 3.66
6811 7948 1.074775 TGGCGCACCATCCTTCTTT 59.925 52.632 10.83 0.00 42.67 2.52
6842 7979 4.142038 GGGGGCAATACTTGATTTACGAT 58.858 43.478 0.00 0.00 0.00 3.73
6933 8070 0.296642 GAATTACAGCGCGTGTACCG 59.703 55.000 17.22 0.00 41.58 4.02
6934 8071 0.648958 GGAATTACAGCGCGTGTACC 59.351 55.000 17.22 13.02 41.58 3.34
6935 8072 0.648958 GGGAATTACAGCGCGTGTAC 59.351 55.000 17.22 9.11 41.58 2.90
6936 8073 0.246910 TGGGAATTACAGCGCGTGTA 59.753 50.000 8.43 12.44 40.94 2.90
6937 8074 0.392461 ATGGGAATTACAGCGCGTGT 60.392 50.000 8.43 13.50 43.86 4.49
6938 8075 0.027979 CATGGGAATTACAGCGCGTG 59.972 55.000 8.43 7.60 0.00 5.34
6939 8076 0.107897 TCATGGGAATTACAGCGCGT 60.108 50.000 8.43 5.88 0.00 6.01
6940 8077 1.229428 ATCATGGGAATTACAGCGCG 58.771 50.000 0.00 0.00 0.00 6.86
6941 8078 2.618241 TGAATCATGGGAATTACAGCGC 59.382 45.455 0.00 0.00 0.00 5.92
6942 8079 3.879295 ACTGAATCATGGGAATTACAGCG 59.121 43.478 0.00 0.00 0.00 5.18
6943 8080 5.841957 AACTGAATCATGGGAATTACAGC 57.158 39.130 0.00 0.00 0.00 4.40
6944 8081 6.567050 CCAAACTGAATCATGGGAATTACAG 58.433 40.000 0.00 0.00 0.00 2.74
6945 8082 5.105392 GCCAAACTGAATCATGGGAATTACA 60.105 40.000 3.82 0.00 33.45 2.41
6946 8083 5.105392 TGCCAAACTGAATCATGGGAATTAC 60.105 40.000 3.82 0.00 33.45 1.89
6947 8084 5.022122 TGCCAAACTGAATCATGGGAATTA 58.978 37.500 3.82 0.00 33.45 1.40
6948 8085 3.839490 TGCCAAACTGAATCATGGGAATT 59.161 39.130 3.82 0.00 33.45 2.17
6949 8086 3.196254 GTGCCAAACTGAATCATGGGAAT 59.804 43.478 3.82 0.00 34.93 3.01
6950 8087 2.562298 GTGCCAAACTGAATCATGGGAA 59.438 45.455 3.82 0.00 34.93 3.97
6954 8109 1.811965 TCCGTGCCAAACTGAATCATG 59.188 47.619 0.00 0.00 0.00 3.07
6963 8118 1.452145 TTGGAAGCTCCGTGCCAAAC 61.452 55.000 0.00 0.00 44.23 2.93
6968 8123 3.093278 CGATTGGAAGCTCCGTGC 58.907 61.111 0.00 0.00 40.17 5.34
6971 8126 1.261619 GTTATGCGATTGGAAGCTCCG 59.738 52.381 0.00 0.00 40.17 4.63
6997 8153 5.011533 ACTCTAAGGGATGTAGCATTGCTAG 59.988 44.000 18.49 6.84 42.11 3.42
7003 8159 3.961408 ACGAACTCTAAGGGATGTAGCAT 59.039 43.478 0.00 0.00 0.00 3.79
7018 8174 9.378597 GTTTTAACTAATTCAGGAAACGAACTC 57.621 33.333 0.00 0.00 0.00 3.01
7019 8175 9.117183 AGTTTTAACTAATTCAGGAAACGAACT 57.883 29.630 0.00 0.00 37.52 3.01
7020 8176 9.726232 AAGTTTTAACTAATTCAGGAAACGAAC 57.274 29.630 0.00 0.00 38.57 3.95
7021 8177 9.724839 CAAGTTTTAACTAATTCAGGAAACGAA 57.275 29.630 0.00 0.00 38.57 3.85
7022 8178 9.111613 TCAAGTTTTAACTAATTCAGGAAACGA 57.888 29.630 0.00 0.00 38.57 3.85
7023 8179 9.166126 GTCAAGTTTTAACTAATTCAGGAAACG 57.834 33.333 0.00 0.00 38.57 3.60
7024 8180 9.166126 CGTCAAGTTTTAACTAATTCAGGAAAC 57.834 33.333 0.00 0.00 38.57 2.78
7027 8183 6.993902 ACCGTCAAGTTTTAACTAATTCAGGA 59.006 34.615 0.00 0.00 38.57 3.86
7028 8184 7.198306 ACCGTCAAGTTTTAACTAATTCAGG 57.802 36.000 0.00 0.00 38.57 3.86
7029 8185 9.166126 GAAACCGTCAAGTTTTAACTAATTCAG 57.834 33.333 0.00 0.00 40.01 3.02
7030 8186 8.675504 TGAAACCGTCAAGTTTTAACTAATTCA 58.324 29.630 0.00 0.00 40.01 2.57
7031 8187 9.166126 CTGAAACCGTCAAGTTTTAACTAATTC 57.834 33.333 0.00 0.00 40.01 2.17
7032 8188 8.132995 CCTGAAACCGTCAAGTTTTAACTAATT 58.867 33.333 0.00 0.00 40.01 1.40
7033 8189 7.499895 TCCTGAAACCGTCAAGTTTTAACTAAT 59.500 33.333 0.00 0.00 40.01 1.73
7034 8190 6.822676 TCCTGAAACCGTCAAGTTTTAACTAA 59.177 34.615 0.00 0.00 40.01 2.24
7035 8191 6.347696 TCCTGAAACCGTCAAGTTTTAACTA 58.652 36.000 0.00 0.00 40.01 2.24
7036 8192 5.187687 TCCTGAAACCGTCAAGTTTTAACT 58.812 37.500 0.00 0.00 40.01 2.24
7037 8193 5.488645 TCCTGAAACCGTCAAGTTTTAAC 57.511 39.130 0.00 0.00 40.01 2.01
7041 8197 3.881220 TCTTCCTGAAACCGTCAAGTTT 58.119 40.909 0.00 0.00 42.56 2.66
7174 8330 0.394352 ATTTCCAGACCACATCGCCC 60.394 55.000 0.00 0.00 0.00 6.13
7196 8352 1.964891 CGGCATGGCATCCTAGCAG 60.965 63.158 20.37 2.11 35.83 4.24
7197 8353 2.111669 CGGCATGGCATCCTAGCA 59.888 61.111 20.37 0.00 35.83 3.49
7210 8366 1.588674 ACAAAATTCTCGTCACGGCA 58.411 45.000 0.00 0.00 0.00 5.69
7231 8387 1.795286 CTGTGGAGCTTCAGACGAAAC 59.205 52.381 0.00 0.00 34.02 2.78
7236 8392 2.353208 CCAGTACTGTGGAGCTTCAGAC 60.353 54.545 21.18 11.97 40.44 3.51
7243 8399 1.376037 GCCACCAGTACTGTGGAGC 60.376 63.158 31.71 21.35 40.44 4.70
7277 8433 2.025981 TCCAGATCCCACCACATTTCTG 60.026 50.000 0.00 0.00 0.00 3.02
7289 8445 4.642437 GGTTTCATCTTTTCTCCAGATCCC 59.358 45.833 0.00 0.00 0.00 3.85
7291 8447 5.256474 TGGGTTTCATCTTTTCTCCAGATC 58.744 41.667 0.00 0.00 0.00 2.75
7327 8483 2.548875 CAGATCTACAGCCTGAACAGC 58.451 52.381 0.00 0.00 0.00 4.40
7344 8500 2.238942 TCGTGAAAAGCTGAAGCAGA 57.761 45.000 4.90 0.00 45.16 4.26
7345 8501 3.231965 CAATCGTGAAAAGCTGAAGCAG 58.768 45.455 4.90 0.00 45.16 4.24
7346 8502 2.030893 CCAATCGTGAAAAGCTGAAGCA 60.031 45.455 4.90 0.00 45.16 3.91
7347 8503 2.030805 ACCAATCGTGAAAAGCTGAAGC 60.031 45.455 0.00 0.00 42.49 3.86
7348 8504 3.904136 ACCAATCGTGAAAAGCTGAAG 57.096 42.857 0.00 0.00 0.00 3.02
7349 8505 3.751175 CCTACCAATCGTGAAAAGCTGAA 59.249 43.478 0.00 0.00 0.00 3.02
7350 8506 3.244422 ACCTACCAATCGTGAAAAGCTGA 60.244 43.478 0.00 0.00 0.00 4.26
7351 8507 3.074412 ACCTACCAATCGTGAAAAGCTG 58.926 45.455 0.00 0.00 0.00 4.24
7352 8508 3.418684 ACCTACCAATCGTGAAAAGCT 57.581 42.857 0.00 0.00 0.00 3.74
7353 8509 4.499037 AAACCTACCAATCGTGAAAAGC 57.501 40.909 0.00 0.00 0.00 3.51
7354 8510 6.500041 TGAAAAACCTACCAATCGTGAAAAG 58.500 36.000 0.00 0.00 0.00 2.27
7355 8511 6.452494 TGAAAAACCTACCAATCGTGAAAA 57.548 33.333 0.00 0.00 0.00 2.29
7356 8512 6.452494 TTGAAAAACCTACCAATCGTGAAA 57.548 33.333 0.00 0.00 0.00 2.69
7357 8513 6.642707 ATTGAAAAACCTACCAATCGTGAA 57.357 33.333 0.00 0.00 0.00 3.18
7358 8514 7.228906 TGTTATTGAAAAACCTACCAATCGTGA 59.771 33.333 0.00 0.00 32.28 4.35
7359 8515 7.364200 TGTTATTGAAAAACCTACCAATCGTG 58.636 34.615 0.00 0.00 32.28 4.35
7360 8516 7.513371 TGTTATTGAAAAACCTACCAATCGT 57.487 32.000 0.00 0.00 32.28 3.73
7363 8519 7.654116 CCGTTTGTTATTGAAAAACCTACCAAT 59.346 33.333 0.00 0.00 31.53 3.16
7377 8533 7.692291 CAGCAACTAATACTCCGTTTGTTATTG 59.308 37.037 0.00 0.00 0.00 1.90
7383 8539 3.181510 GGCAGCAACTAATACTCCGTTTG 60.182 47.826 0.00 0.00 0.00 2.93
7441 8600 1.667756 GCACCGACAGATACAACACGA 60.668 52.381 0.00 0.00 0.00 4.35
7442 8601 0.713883 GCACCGACAGATACAACACG 59.286 55.000 0.00 0.00 0.00 4.49
7464 8623 3.515330 ATACAGGGTTAAACTCGACGG 57.485 47.619 0.00 0.00 0.00 4.79
7481 8640 3.820689 TGCGCTGTTTCATGACAAATAC 58.179 40.909 9.73 0.00 0.00 1.89
7484 8643 3.367992 AATGCGCTGTTTCATGACAAA 57.632 38.095 9.73 0.00 0.00 2.83
7499 8658 4.262976 GGATTTGCTTCGTTTAGAAATGCG 59.737 41.667 0.00 0.00 38.57 4.73
7520 8679 3.278668 TTACCCACTGAAAACAACGGA 57.721 42.857 0.00 0.00 0.00 4.69
7581 8742 4.337274 ACACGAGGAAAAGAAACGGAAAAT 59.663 37.500 0.00 0.00 0.00 1.82
7644 8805 4.844884 GGTACCTGTCAGGCTCTTTAATT 58.155 43.478 19.40 0.00 39.63 1.40
7679 8840 4.094294 TCTGATTAGCGGTTGTGCAAATAC 59.906 41.667 0.00 0.00 37.31 1.89
7720 8881 7.609056 ACAACAATACGAGTGGTTTATACTCT 58.391 34.615 0.00 0.00 41.80 3.24
7721 8882 7.823149 ACAACAATACGAGTGGTTTATACTC 57.177 36.000 0.00 0.00 40.83 2.59
7722 8883 7.874016 TGAACAACAATACGAGTGGTTTATACT 59.126 33.333 0.00 0.00 33.43 2.12
7723 8884 8.020861 TGAACAACAATACGAGTGGTTTATAC 57.979 34.615 0.00 0.00 33.43 1.47
7724 8885 8.780846 ATGAACAACAATACGAGTGGTTTATA 57.219 30.769 0.00 0.00 33.43 0.98
7725 8886 7.681939 ATGAACAACAATACGAGTGGTTTAT 57.318 32.000 0.00 0.00 33.43 1.40
7726 8887 8.604640 TTATGAACAACAATACGAGTGGTTTA 57.395 30.769 0.00 0.00 33.43 2.01
7727 8888 7.499321 TTATGAACAACAATACGAGTGGTTT 57.501 32.000 0.00 0.00 33.43 3.27
7779 8941 8.585881 CCTCTAATCTCTTTGATCCCGTAAATA 58.414 37.037 0.00 0.00 33.57 1.40
7780 8942 7.290248 TCCTCTAATCTCTTTGATCCCGTAAAT 59.710 37.037 0.00 0.00 33.57 1.40
7781 8943 6.610020 TCCTCTAATCTCTTTGATCCCGTAAA 59.390 38.462 0.00 0.00 33.57 2.01
7782 8944 6.134055 TCCTCTAATCTCTTTGATCCCGTAA 58.866 40.000 0.00 0.00 33.57 3.18
7783 8945 5.702266 TCCTCTAATCTCTTTGATCCCGTA 58.298 41.667 0.00 0.00 33.57 4.02
7798 8960 2.943199 GCACAGCTGCCTTTCCTCTAAT 60.943 50.000 15.27 0.00 37.45 1.73
7834 8996 0.843309 TTCAGAAGTGGCCACCTTGA 59.157 50.000 32.29 26.98 0.00 3.02
7835 8997 1.242076 CTTCAGAAGTGGCCACCTTG 58.758 55.000 32.29 25.28 0.00 3.61
7836 8998 0.538287 GCTTCAGAAGTGGCCACCTT 60.538 55.000 32.29 23.77 0.00 3.50
7837 8999 1.073897 GCTTCAGAAGTGGCCACCT 59.926 57.895 32.29 21.10 0.00 4.00
7838 9000 1.973812 GGCTTCAGAAGTGGCCACC 60.974 63.158 32.29 18.03 43.59 4.61
7839 9001 1.973812 GGGCTTCAGAAGTGGCCAC 60.974 63.158 29.22 29.22 45.68 5.01
7840 9002 2.436109 GGGCTTCAGAAGTGGCCA 59.564 61.111 0.00 0.00 45.68 5.36
7841 9003 2.747855 CGGGCTTCAGAAGTGGCC 60.748 66.667 11.94 7.63 43.42 5.36
7842 9004 2.032681 ACGGGCTTCAGAAGTGGC 59.967 61.111 11.94 0.00 0.00 5.01
7843 9005 0.320374 TACACGGGCTTCAGAAGTGG 59.680 55.000 11.94 4.21 37.16 4.00
7844 9006 1.270094 TGTACACGGGCTTCAGAAGTG 60.270 52.381 11.94 5.48 38.63 3.16
7845 9007 1.045407 TGTACACGGGCTTCAGAAGT 58.955 50.000 11.94 0.00 0.00 3.01
7846 9008 2.093973 AGATGTACACGGGCTTCAGAAG 60.094 50.000 5.72 5.72 0.00 2.85
7847 9009 1.899814 AGATGTACACGGGCTTCAGAA 59.100 47.619 0.00 0.00 0.00 3.02
7891 9072 5.642491 AGCGGAAAGGAACTAATAAGACAAC 59.358 40.000 0.00 0.00 38.49 3.32
7934 9115 8.404765 AGGATTGGCAAAACAAACTTAAAAATG 58.595 29.630 3.01 0.00 33.48 2.32
8082 9270 4.792528 CTCCGTCGGAGTAGTACTTTAG 57.207 50.000 29.66 3.84 44.25 1.85
8096 9284 2.490148 TATGCTGCTCCCTCCGTCG 61.490 63.158 0.00 0.00 0.00 5.12
8097 9285 1.068250 GTATGCTGCTCCCTCCGTC 59.932 63.158 0.00 0.00 0.00 4.79
8098 9286 1.050988 ATGTATGCTGCTCCCTCCGT 61.051 55.000 0.00 0.00 0.00 4.69
8099 9287 0.602106 CATGTATGCTGCTCCCTCCG 60.602 60.000 0.00 0.00 0.00 4.63
8100 9288 0.250640 CCATGTATGCTGCTCCCTCC 60.251 60.000 0.00 0.00 0.00 4.30
8101 9289 0.471617 ACCATGTATGCTGCTCCCTC 59.528 55.000 0.00 0.00 0.00 4.30
8102 9290 0.182061 CACCATGTATGCTGCTCCCT 59.818 55.000 0.00 0.00 0.00 4.20
8103 9291 1.450531 GCACCATGTATGCTGCTCCC 61.451 60.000 11.05 0.00 40.08 4.30
8104 9292 0.749091 TGCACCATGTATGCTGCTCC 60.749 55.000 17.33 0.00 43.77 4.70
8105 9293 0.379669 GTGCACCATGTATGCTGCTC 59.620 55.000 17.33 6.20 43.77 4.26
8106 9294 0.322726 TGTGCACCATGTATGCTGCT 60.323 50.000 15.69 0.00 43.77 4.24
8107 9295 0.179156 GTGTGCACCATGTATGCTGC 60.179 55.000 15.69 11.77 43.77 5.25
8108 9296 1.399440 GAGTGTGCACCATGTATGCTG 59.601 52.381 15.69 0.00 43.77 4.41
8109 9297 1.003464 TGAGTGTGCACCATGTATGCT 59.997 47.619 15.69 0.00 43.77 3.79
8110 9298 1.452110 TGAGTGTGCACCATGTATGC 58.548 50.000 15.69 11.34 43.68 3.14
8111 9299 2.356695 CCATGAGTGTGCACCATGTATG 59.643 50.000 24.06 17.13 37.83 2.39
8112 9300 2.025981 ACCATGAGTGTGCACCATGTAT 60.026 45.455 24.06 14.28 37.83 2.29
8113 9301 1.350684 ACCATGAGTGTGCACCATGTA 59.649 47.619 24.06 6.99 37.83 2.29
8114 9302 0.111061 ACCATGAGTGTGCACCATGT 59.889 50.000 24.06 14.37 37.83 3.21
8115 9303 0.524414 CACCATGAGTGTGCACCATG 59.476 55.000 21.09 21.09 41.93 3.66
8116 9304 2.951269 CACCATGAGTGTGCACCAT 58.049 52.632 15.69 7.86 41.93 3.55
8117 9305 4.479303 CACCATGAGTGTGCACCA 57.521 55.556 15.69 5.46 41.93 4.17
8125 9313 3.430042 AAGAGATTGTGCACCATGAGT 57.570 42.857 15.69 0.00 0.00 3.41
8126 9314 4.778534 AAAAGAGATTGTGCACCATGAG 57.221 40.909 15.69 0.00 0.00 2.90
8127 9315 4.583907 TGAAAAAGAGATTGTGCACCATGA 59.416 37.500 15.69 0.00 0.00 3.07
8128 9316 4.682860 GTGAAAAAGAGATTGTGCACCATG 59.317 41.667 15.69 0.00 0.00 3.66
8129 9317 4.341806 TGTGAAAAAGAGATTGTGCACCAT 59.658 37.500 15.69 9.13 0.00 3.55
8130 9318 3.698539 TGTGAAAAAGAGATTGTGCACCA 59.301 39.130 15.69 2.96 0.00 4.17
8131 9319 4.305989 TGTGAAAAAGAGATTGTGCACC 57.694 40.909 15.69 0.00 0.00 5.01
8132 9320 5.978919 TGAATGTGAAAAAGAGATTGTGCAC 59.021 36.000 10.75 10.75 0.00 4.57
8133 9321 6.146601 TGAATGTGAAAAAGAGATTGTGCA 57.853 33.333 0.00 0.00 0.00 4.57
8134 9322 6.864685 TCATGAATGTGAAAAAGAGATTGTGC 59.135 34.615 0.00 0.00 0.00 4.57
8135 9323 8.806177 TTCATGAATGTGAAAAAGAGATTGTG 57.194 30.769 3.38 0.00 35.31 3.33
8145 9333 9.978044 TGTGATGTTTATTCATGAATGTGAAAA 57.022 25.926 27.59 17.77 41.09 2.29
8146 9334 9.409312 GTGTGATGTTTATTCATGAATGTGAAA 57.591 29.630 27.59 18.08 41.09 2.69
8147 9335 8.574737 TGTGTGATGTTTATTCATGAATGTGAA 58.425 29.630 27.59 17.10 41.88 3.18
8148 9336 8.108551 TGTGTGATGTTTATTCATGAATGTGA 57.891 30.769 27.59 12.71 32.50 3.58
8149 9337 7.008901 GCTGTGTGATGTTTATTCATGAATGTG 59.991 37.037 27.59 6.40 32.50 3.21
8150 9338 7.031372 GCTGTGTGATGTTTATTCATGAATGT 58.969 34.615 27.59 8.88 32.50 2.71
8151 9339 6.474427 GGCTGTGTGATGTTTATTCATGAATG 59.526 38.462 27.59 9.61 32.50 2.67
8152 9340 6.379133 AGGCTGTGTGATGTTTATTCATGAAT 59.621 34.615 23.75 23.75 34.93 2.57
8153 9341 5.711506 AGGCTGTGTGATGTTTATTCATGAA 59.288 36.000 11.26 11.26 0.00 2.57
8154 9342 5.255687 AGGCTGTGTGATGTTTATTCATGA 58.744 37.500 0.00 0.00 0.00 3.07
8155 9343 5.571784 AGGCTGTGTGATGTTTATTCATG 57.428 39.130 0.00 0.00 0.00 3.07
8156 9344 7.340232 ACAATAGGCTGTGTGATGTTTATTCAT 59.660 33.333 0.00 0.00 0.00 2.57
8157 9345 6.658816 ACAATAGGCTGTGTGATGTTTATTCA 59.341 34.615 0.00 0.00 0.00 2.57
8158 9346 7.088589 ACAATAGGCTGTGTGATGTTTATTC 57.911 36.000 0.00 0.00 0.00 1.75
8159 9347 6.658816 TGACAATAGGCTGTGTGATGTTTATT 59.341 34.615 10.03 0.00 0.00 1.40
8160 9348 6.179756 TGACAATAGGCTGTGTGATGTTTAT 58.820 36.000 10.03 0.00 0.00 1.40
8161 9349 5.555966 TGACAATAGGCTGTGTGATGTTTA 58.444 37.500 10.03 0.00 0.00 2.01
8162 9350 4.397420 TGACAATAGGCTGTGTGATGTTT 58.603 39.130 10.03 0.00 0.00 2.83
8163 9351 4.019792 TGACAATAGGCTGTGTGATGTT 57.980 40.909 10.03 0.00 0.00 2.71
8164 9352 3.701205 TGACAATAGGCTGTGTGATGT 57.299 42.857 10.03 0.00 0.00 3.06
8165 9353 4.256110 TCTTGACAATAGGCTGTGTGATG 58.744 43.478 10.03 5.14 0.00 3.07
8166 9354 4.558226 TCTTGACAATAGGCTGTGTGAT 57.442 40.909 10.03 0.00 0.00 3.06
8167 9355 4.256110 CATCTTGACAATAGGCTGTGTGA 58.744 43.478 10.03 0.00 0.00 3.58
8168 9356 4.005650 ACATCTTGACAATAGGCTGTGTG 58.994 43.478 10.03 1.84 0.00 3.82
8169 9357 4.292186 ACATCTTGACAATAGGCTGTGT 57.708 40.909 5.45 5.45 0.00 3.72
8170 9358 5.413833 AGAAACATCTTGACAATAGGCTGTG 59.586 40.000 0.00 0.00 0.00 3.66
8171 9359 5.564550 AGAAACATCTTGACAATAGGCTGT 58.435 37.500 0.00 0.00 0.00 4.40
8172 9360 6.506500 AAGAAACATCTTGACAATAGGCTG 57.493 37.500 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.