Multiple sequence alignment - TraesCS2A01G338400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G338400 chr2A 100.000 6788 0 0 1 6788 572704770 572697983 0.000000e+00 12536.0
1 TraesCS2A01G338400 chr2A 95.628 366 15 1 1 366 340541640 340541276 2.730000e-163 586.0
2 TraesCS2A01G338400 chr2A 80.249 643 62 31 80 721 187487746 187487168 2.260000e-114 424.0
3 TraesCS2A01G338400 chr2A 96.471 255 7 2 474 727 340540602 340540349 2.930000e-113 420.0
4 TraesCS2A01G338400 chr2A 86.400 250 27 6 474 721 187488345 187488101 4.040000e-67 267.0
5 TraesCS2A01G338400 chr2A 100.000 39 0 0 5654 5692 572699078 572699040 9.440000e-09 73.1
6 TraesCS2A01G338400 chr2A 100.000 39 0 0 5693 5731 572699117 572699079 9.440000e-09 73.1
7 TraesCS2A01G338400 chr2D 96.090 2992 93 13 1346 4334 417379119 417382089 0.000000e+00 4855.0
8 TraesCS2A01G338400 chr2D 97.074 1367 35 4 4329 5692 417382433 417383797 0.000000e+00 2298.0
9 TraesCS2A01G338400 chr2D 93.447 763 35 5 6015 6773 417384058 417384809 0.000000e+00 1118.0
10 TraesCS2A01G338400 chr2D 86.397 272 15 11 1081 1344 417378472 417378729 1.860000e-70 278.0
11 TraesCS2A01G338400 chr2D 88.950 181 6 3 894 1074 417378258 417378424 1.920000e-50 211.0
12 TraesCS2A01G338400 chr2B 93.054 1382 64 13 4341 5692 489354901 489356280 0.000000e+00 1991.0
13 TraesCS2A01G338400 chr2B 91.233 1095 77 11 5693 6773 489356242 489357331 0.000000e+00 1472.0
14 TraesCS2A01G338400 chr2B 83.406 687 78 27 1963 2627 489354164 489354836 7.530000e-169 604.0
15 TraesCS2A01G338400 chr2B 84.073 383 38 9 1359 1720 489353621 489354001 1.400000e-91 348.0
16 TraesCS2A01G338400 chr6A 95.902 366 14 1 1 366 171793394 171793758 5.860000e-165 592.0
17 TraesCS2A01G338400 chr6A 96.286 350 11 2 19 366 209565024 209565373 2.120000e-159 573.0
18 TraesCS2A01G338400 chr6A 96.875 256 3 5 474 727 171794219 171794471 2.260000e-114 424.0
19 TraesCS2A01G338400 chr6A 96.063 254 3 3 474 727 209565973 209566219 2.280000e-109 407.0
20 TraesCS2A01G338400 chr5A 95.628 366 16 0 1 366 569639862 569640227 7.580000e-164 588.0
21 TraesCS2A01G338400 chr5A 88.889 423 36 8 55 472 313468521 313468937 1.690000e-140 510.0
22 TraesCS2A01G338400 chr5A 96.863 255 6 2 474 727 569640686 569640939 6.290000e-115 425.0
23 TraesCS2A01G338400 chr4A 94.809 366 17 1 1 366 391390340 391390703 2.750000e-158 569.0
24 TraesCS2A01G338400 chr4A 98.039 255 3 2 474 727 391391155 391391408 6.250000e-120 442.0
25 TraesCS2A01G338400 chr1D 88.745 462 40 12 16 472 84074523 84074069 7.690000e-154 555.0
26 TraesCS2A01G338400 chr1A 93.956 364 22 0 3 366 3762959 3763322 9.950000e-153 551.0
27 TraesCS2A01G338400 chr1A 97.244 254 5 2 474 727 3763591 3763842 4.860000e-116 429.0
28 TraesCS2A01G338400 chr3A 87.609 460 45 10 16 472 632112805 632112355 2.170000e-144 523.0
29 TraesCS2A01G338400 chr3B 85.714 259 27 9 474 727 687134553 687134300 1.450000e-66 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G338400 chr2A 572697983 572704770 6787 True 12536.00 12536 100.0000 1 6788 1 chr2A.!!$R1 6787
1 TraesCS2A01G338400 chr2A 340540349 340541640 1291 True 503.00 586 96.0495 1 727 2 chr2A.!!$R3 726
2 TraesCS2A01G338400 chr2A 187487168 187488345 1177 True 345.50 424 83.3245 80 721 2 chr2A.!!$R2 641
3 TraesCS2A01G338400 chr2D 417378258 417384809 6551 False 1752.00 4855 92.3916 894 6773 5 chr2D.!!$F1 5879
4 TraesCS2A01G338400 chr2B 489353621 489357331 3710 False 1103.75 1991 87.9415 1359 6773 4 chr2B.!!$F1 5414
5 TraesCS2A01G338400 chr6A 171793394 171794471 1077 False 508.00 592 96.3885 1 727 2 chr6A.!!$F1 726
6 TraesCS2A01G338400 chr6A 209565024 209566219 1195 False 490.00 573 96.1745 19 727 2 chr6A.!!$F2 708
7 TraesCS2A01G338400 chr5A 569639862 569640939 1077 False 506.50 588 96.2455 1 727 2 chr5A.!!$F2 726
8 TraesCS2A01G338400 chr4A 391390340 391391408 1068 False 505.50 569 96.4240 1 727 2 chr4A.!!$F1 726
9 TraesCS2A01G338400 chr1A 3762959 3763842 883 False 490.00 551 95.6000 3 727 2 chr1A.!!$F1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 2286 0.025256 CGCGACGACTCTAGTGACTC 59.975 60.000 0.00 0.0 0.00 3.36 F
1195 2717 0.034337 TCGCCTCTTGTGTTGGGTAC 59.966 55.000 0.00 0.0 0.00 3.34 F
2014 3952 0.254462 TTGAGTGGTGTGTTGGCTCA 59.746 50.000 0.00 0.0 34.80 4.26 F
2263 4216 1.069906 GCAGAAGTGTAAACTGTGCGG 60.070 52.381 5.17 0.0 34.60 5.69 F
3174 5144 0.732538 GCAAATAGGGTGCACGCAAC 60.733 55.000 32.29 13.2 41.80 4.17 F
3348 5318 1.017387 GGATCGGTGCCAAGAATCAC 58.983 55.000 0.00 0.0 0.00 3.06 F
4641 6988 0.036732 TCAAATCCTCCGCAGCAAGT 59.963 50.000 0.00 0.0 0.00 3.16 F
5313 7660 0.527565 GCACTGCCCAACTGGTTATG 59.472 55.000 0.00 0.0 36.04 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1616 3539 0.038343 CATTTGGCTTGTGGAACGGG 60.038 55.000 0.00 0.0 42.39 5.28 R
3037 5006 0.104671 CAAGGTTGCAGTTTGGGTGG 59.895 55.000 0.00 0.0 0.00 4.61 R
3038 5007 1.110442 TCAAGGTTGCAGTTTGGGTG 58.890 50.000 6.96 0.0 0.00 4.61 R
3908 5879 2.299013 TGCACTGTAGTACCAGACCTTG 59.701 50.000 6.18 0.0 36.30 3.61 R
4641 6988 0.042581 TGCAGGAGTGGGATGGACTA 59.957 55.000 0.00 0.0 0.00 2.59 R
4765 7112 1.002134 GCCTAGCAAGACCCTGCAA 60.002 57.895 0.00 0.0 45.18 4.08 R
5772 8125 0.038526 ACGTGGCTTCTTCTGTACCG 60.039 55.000 0.00 0.0 0.00 4.02 R
6440 8804 0.674581 TCTCGCCTCCTGCATGTTTG 60.675 55.000 0.00 0.0 41.33 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.674380 GGCAGAGTGGTTGGCTGG 60.674 66.667 0.00 0.00 38.03 4.85
61 62 2.237143 CTGGCAATGAGACTAGGGTTCA 59.763 50.000 0.00 0.00 0.00 3.18
121 642 2.487086 GCATGTCCTACCCATGTATGCA 60.487 50.000 0.00 0.00 41.38 3.96
267 1394 8.950403 ATATTCTAAAAGTTGCGAGTTTTCAC 57.050 30.769 20.47 0.00 38.83 3.18
472 1939 9.950680 AATGATCGTGTATTCAAAACATATTCC 57.049 29.630 0.00 0.00 0.00 3.01
473 1940 7.626446 TGATCGTGTATTCAAAACATATTCCG 58.374 34.615 0.00 0.00 0.00 4.30
474 1941 7.492994 TGATCGTGTATTCAAAACATATTCCGA 59.507 33.333 0.00 0.00 0.00 4.55
475 1942 7.598189 TCGTGTATTCAAAACATATTCCGAA 57.402 32.000 0.00 0.00 0.00 4.30
476 1943 8.030744 TCGTGTATTCAAAACATATTCCGAAA 57.969 30.769 0.00 0.00 0.00 3.46
477 1944 8.504815 TCGTGTATTCAAAACATATTCCGAAAA 58.495 29.630 0.00 0.00 0.00 2.29
478 1945 9.284594 CGTGTATTCAAAACATATTCCGAAAAT 57.715 29.630 0.00 0.00 0.00 1.82
746 2220 8.723311 TCATAAAGTGGTATTTGACTTTAACCG 58.277 33.333 0.00 0.00 44.05 4.44
747 2221 6.947644 AAAGTGGTATTTGACTTTAACCGT 57.052 33.333 0.00 0.00 39.96 4.83
748 2222 6.947644 AAGTGGTATTTGACTTTAACCGTT 57.052 33.333 0.00 0.00 32.69 4.44
749 2223 6.549912 AGTGGTATTTGACTTTAACCGTTC 57.450 37.500 0.00 0.00 32.69 3.95
750 2224 6.293698 AGTGGTATTTGACTTTAACCGTTCT 58.706 36.000 0.00 0.00 32.69 3.01
751 2225 6.426025 AGTGGTATTTGACTTTAACCGTTCTC 59.574 38.462 0.00 0.00 32.69 2.87
752 2226 6.203338 GTGGTATTTGACTTTAACCGTTCTCA 59.797 38.462 0.00 0.00 32.69 3.27
753 2227 6.425721 TGGTATTTGACTTTAACCGTTCTCAG 59.574 38.462 0.00 0.00 32.69 3.35
754 2228 5.941948 ATTTGACTTTAACCGTTCTCAGG 57.058 39.130 0.00 0.00 0.00 3.86
755 2229 4.411256 TTGACTTTAACCGTTCTCAGGT 57.589 40.909 0.00 0.00 45.29 4.00
761 2235 3.307379 ACCGTTCTCAGGTTGCTTC 57.693 52.632 0.00 0.00 39.29 3.86
762 2236 0.600255 ACCGTTCTCAGGTTGCTTCG 60.600 55.000 0.00 0.00 39.29 3.79
763 2237 0.600255 CCGTTCTCAGGTTGCTTCGT 60.600 55.000 0.00 0.00 0.00 3.85
764 2238 1.217882 CGTTCTCAGGTTGCTTCGTT 58.782 50.000 0.00 0.00 0.00 3.85
765 2239 1.070577 CGTTCTCAGGTTGCTTCGTTG 60.071 52.381 0.00 0.00 0.00 4.10
766 2240 1.940613 GTTCTCAGGTTGCTTCGTTGT 59.059 47.619 0.00 0.00 0.00 3.32
767 2241 1.581934 TCTCAGGTTGCTTCGTTGTG 58.418 50.000 0.00 0.00 0.00 3.33
768 2242 1.138069 TCTCAGGTTGCTTCGTTGTGA 59.862 47.619 0.00 0.00 0.00 3.58
769 2243 1.939934 CTCAGGTTGCTTCGTTGTGAA 59.060 47.619 0.00 0.00 34.74 3.18
770 2244 1.668751 TCAGGTTGCTTCGTTGTGAAC 59.331 47.619 0.00 0.00 31.87 3.18
779 2253 3.018973 GTTGTGAACGCGCCTGAA 58.981 55.556 5.73 0.00 0.00 3.02
780 2254 1.574428 GTTGTGAACGCGCCTGAAT 59.426 52.632 5.73 0.00 0.00 2.57
781 2255 0.452784 GTTGTGAACGCGCCTGAATC 60.453 55.000 5.73 0.00 0.00 2.52
782 2256 1.573829 TTGTGAACGCGCCTGAATCC 61.574 55.000 5.73 0.00 0.00 3.01
783 2257 2.813474 TGAACGCGCCTGAATCCG 60.813 61.111 5.73 0.00 0.00 4.18
784 2258 3.564027 GAACGCGCCTGAATCCGG 61.564 66.667 5.73 0.00 0.00 5.14
785 2259 4.077184 AACGCGCCTGAATCCGGA 62.077 61.111 6.61 6.61 0.00 5.14
786 2260 4.514577 ACGCGCCTGAATCCGGAG 62.515 66.667 11.34 0.00 0.00 4.63
800 2274 2.493030 GGAGGAAATCCGCGACGA 59.507 61.111 8.23 0.00 38.67 4.20
801 2275 1.877165 GGAGGAAATCCGCGACGAC 60.877 63.158 8.23 0.00 38.67 4.34
802 2276 1.139095 GAGGAAATCCGCGACGACT 59.861 57.895 8.23 0.00 42.08 4.18
803 2277 0.866483 GAGGAAATCCGCGACGACTC 60.866 60.000 8.23 3.60 42.08 3.36
804 2278 1.139095 GGAAATCCGCGACGACTCT 59.861 57.895 8.23 0.00 0.00 3.24
805 2279 0.379669 GGAAATCCGCGACGACTCTA 59.620 55.000 8.23 0.00 0.00 2.43
806 2280 1.597445 GGAAATCCGCGACGACTCTAG 60.597 57.143 8.23 0.00 0.00 2.43
807 2281 1.063764 GAAATCCGCGACGACTCTAGT 59.936 52.381 8.23 0.00 0.00 2.57
808 2282 0.377554 AATCCGCGACGACTCTAGTG 59.622 55.000 8.23 0.00 0.00 2.74
809 2283 0.461516 ATCCGCGACGACTCTAGTGA 60.462 55.000 8.23 0.00 0.00 3.41
810 2284 1.060622 CCGCGACGACTCTAGTGAC 59.939 63.158 8.23 0.00 0.00 3.67
811 2285 1.360194 CCGCGACGACTCTAGTGACT 61.360 60.000 8.23 0.00 0.00 3.41
812 2286 0.025256 CGCGACGACTCTAGTGACTC 59.975 60.000 0.00 0.00 0.00 3.36
813 2287 0.374410 GCGACGACTCTAGTGACTCC 59.626 60.000 0.00 0.00 0.00 3.85
814 2288 1.008329 CGACGACTCTAGTGACTCCC 58.992 60.000 0.00 0.00 0.00 4.30
815 2289 1.675116 CGACGACTCTAGTGACTCCCA 60.675 57.143 0.00 0.00 0.00 4.37
816 2290 2.434428 GACGACTCTAGTGACTCCCAA 58.566 52.381 0.00 0.00 0.00 4.12
817 2291 2.161030 ACGACTCTAGTGACTCCCAAC 58.839 52.381 0.00 0.00 0.00 3.77
818 2292 2.224818 ACGACTCTAGTGACTCCCAACT 60.225 50.000 0.00 0.00 0.00 3.16
819 2293 2.820787 CGACTCTAGTGACTCCCAACTT 59.179 50.000 0.00 0.00 0.00 2.66
820 2294 3.119779 CGACTCTAGTGACTCCCAACTTC 60.120 52.174 0.00 0.00 0.00 3.01
821 2295 4.083565 GACTCTAGTGACTCCCAACTTCT 58.916 47.826 0.00 0.00 0.00 2.85
822 2296 4.083565 ACTCTAGTGACTCCCAACTTCTC 58.916 47.826 0.00 0.00 0.00 2.87
823 2297 4.202631 ACTCTAGTGACTCCCAACTTCTCT 60.203 45.833 0.00 0.00 0.00 3.10
824 2298 4.337145 TCTAGTGACTCCCAACTTCTCTC 58.663 47.826 0.00 0.00 0.00 3.20
825 2299 2.964209 AGTGACTCCCAACTTCTCTCA 58.036 47.619 0.00 0.00 0.00 3.27
826 2300 3.309296 AGTGACTCCCAACTTCTCTCAA 58.691 45.455 0.00 0.00 0.00 3.02
827 2301 3.906846 AGTGACTCCCAACTTCTCTCAAT 59.093 43.478 0.00 0.00 0.00 2.57
828 2302 4.349342 AGTGACTCCCAACTTCTCTCAATT 59.651 41.667 0.00 0.00 0.00 2.32
829 2303 5.066593 GTGACTCCCAACTTCTCTCAATTT 58.933 41.667 0.00 0.00 0.00 1.82
830 2304 5.532779 GTGACTCCCAACTTCTCTCAATTTT 59.467 40.000 0.00 0.00 0.00 1.82
831 2305 5.532406 TGACTCCCAACTTCTCTCAATTTTG 59.468 40.000 0.00 0.00 0.00 2.44
832 2306 5.449553 ACTCCCAACTTCTCTCAATTTTGT 58.550 37.500 0.00 0.00 0.00 2.83
833 2307 5.893824 ACTCCCAACTTCTCTCAATTTTGTT 59.106 36.000 0.00 0.00 0.00 2.83
834 2308 6.381133 ACTCCCAACTTCTCTCAATTTTGTTT 59.619 34.615 0.00 0.00 0.00 2.83
835 2309 7.093333 ACTCCCAACTTCTCTCAATTTTGTTTT 60.093 33.333 0.00 0.00 0.00 2.43
836 2310 7.619965 TCCCAACTTCTCTCAATTTTGTTTTT 58.380 30.769 0.00 0.00 0.00 1.94
869 2343 8.728337 TGAGGATCAACTTCTCTCAATTTATG 57.272 34.615 0.00 0.00 45.97 1.90
870 2344 7.772292 TGAGGATCAACTTCTCTCAATTTATGG 59.228 37.037 0.00 0.00 45.97 2.74
871 2345 6.545298 AGGATCAACTTCTCTCAATTTATGGC 59.455 38.462 0.00 0.00 0.00 4.40
872 2346 6.238869 GGATCAACTTCTCTCAATTTATGGCC 60.239 42.308 0.00 0.00 0.00 5.36
873 2347 4.949856 TCAACTTCTCTCAATTTATGGCCC 59.050 41.667 0.00 0.00 0.00 5.80
874 2348 3.545703 ACTTCTCTCAATTTATGGCCCG 58.454 45.455 0.00 0.00 0.00 6.13
875 2349 3.054361 ACTTCTCTCAATTTATGGCCCGT 60.054 43.478 0.00 0.00 0.00 5.28
876 2350 2.917933 TCTCTCAATTTATGGCCCGTG 58.082 47.619 0.00 0.00 0.00 4.94
877 2351 1.334869 CTCTCAATTTATGGCCCGTGC 59.665 52.381 0.00 0.00 0.00 5.34
878 2352 1.064758 TCTCAATTTATGGCCCGTGCT 60.065 47.619 0.00 0.00 37.74 4.40
879 2353 1.334869 CTCAATTTATGGCCCGTGCTC 59.665 52.381 0.00 0.00 37.74 4.26
880 2354 1.102154 CAATTTATGGCCCGTGCTCA 58.898 50.000 0.00 0.00 37.74 4.26
881 2355 1.102978 AATTTATGGCCCGTGCTCAC 58.897 50.000 0.00 0.00 37.74 3.51
882 2356 0.255890 ATTTATGGCCCGTGCTCACT 59.744 50.000 0.00 0.00 37.74 3.41
883 2357 0.906066 TTTATGGCCCGTGCTCACTA 59.094 50.000 0.00 0.00 37.74 2.74
884 2358 0.177141 TTATGGCCCGTGCTCACTAC 59.823 55.000 0.00 0.00 37.74 2.73
885 2359 2.011741 TATGGCCCGTGCTCACTACG 62.012 60.000 0.00 0.00 40.98 3.51
887 2361 4.735132 GCCCGTGCTCACTACGCA 62.735 66.667 0.00 0.00 40.04 5.24
888 2362 2.048597 CCCGTGCTCACTACGCAA 60.049 61.111 0.00 0.00 39.39 4.85
889 2363 1.666553 CCCGTGCTCACTACGCAAA 60.667 57.895 0.00 0.00 39.39 3.68
890 2364 1.225376 CCCGTGCTCACTACGCAAAA 61.225 55.000 0.00 0.00 39.39 2.44
891 2365 0.110823 CCGTGCTCACTACGCAAAAC 60.111 55.000 0.00 0.00 39.39 2.43
892 2366 0.110823 CGTGCTCACTACGCAAAACC 60.111 55.000 0.00 0.00 39.39 3.27
904 2378 1.227118 CAAAACCAACCGCACCCAC 60.227 57.895 0.00 0.00 0.00 4.61
970 2444 2.159366 CGAGTAGTGATCGCAACCTTCT 60.159 50.000 9.33 0.00 32.81 2.85
978 2452 2.032681 GCAACCTTCTGACCCGCT 59.967 61.111 0.00 0.00 0.00 5.52
981 2455 2.520536 AACCTTCTGACCCGCTGCT 61.521 57.895 0.00 0.00 0.00 4.24
997 2471 2.434359 CTGCCTTTCGTCCGACCC 60.434 66.667 0.00 0.00 0.00 4.46
998 2472 3.234630 CTGCCTTTCGTCCGACCCA 62.235 63.158 0.00 0.00 0.00 4.51
999 2473 2.741211 GCCTTTCGTCCGACCCAC 60.741 66.667 0.00 0.00 0.00 4.61
1000 2474 2.047560 CCTTTCGTCCGACCCACC 60.048 66.667 0.00 0.00 0.00 4.61
1001 2475 2.431942 CTTTCGTCCGACCCACCG 60.432 66.667 0.00 0.00 0.00 4.94
1002 2476 4.668118 TTTCGTCCGACCCACCGC 62.668 66.667 0.00 0.00 0.00 5.68
1054 2528 1.289380 GACGCCGCCCTAGGAATAG 59.711 63.158 11.48 0.00 0.00 1.73
1055 2529 2.156051 GACGCCGCCCTAGGAATAGG 62.156 65.000 11.48 8.80 36.98 2.57
1062 2536 1.205893 GCCCTAGGAATAGGATCTGCG 59.794 57.143 11.48 0.00 39.60 5.18
1122 2638 2.362503 ACGCTGGTCGAGGATCCA 60.363 61.111 15.82 0.00 41.67 3.41
1141 2657 3.640407 TCCACCTGGAGCTGCACC 61.640 66.667 2.72 9.32 39.78 5.01
1193 2715 1.071471 CTCGCCTCTTGTGTTGGGT 59.929 57.895 0.00 0.00 0.00 4.51
1195 2717 0.034337 TCGCCTCTTGTGTTGGGTAC 59.966 55.000 0.00 0.00 0.00 3.34
1199 2721 2.290323 GCCTCTTGTGTTGGGTACTCAT 60.290 50.000 0.00 0.00 30.93 2.90
1241 2763 2.721906 TCTTCCCCCATTCTCTTTGGTT 59.278 45.455 0.00 0.00 31.99 3.67
1242 2764 2.603075 TCCCCCATTCTCTTTGGTTG 57.397 50.000 0.00 0.00 31.99 3.77
1243 2765 0.897621 CCCCCATTCTCTTTGGTTGC 59.102 55.000 0.00 0.00 31.99 4.17
1244 2766 1.631405 CCCCATTCTCTTTGGTTGCA 58.369 50.000 0.00 0.00 31.99 4.08
1245 2767 2.181975 CCCCATTCTCTTTGGTTGCAT 58.818 47.619 0.00 0.00 31.99 3.96
1246 2768 2.568509 CCCCATTCTCTTTGGTTGCATT 59.431 45.455 0.00 0.00 31.99 3.56
1247 2769 3.768757 CCCCATTCTCTTTGGTTGCATTA 59.231 43.478 0.00 0.00 31.99 1.90
1248 2770 4.406649 CCCCATTCTCTTTGGTTGCATTAT 59.593 41.667 0.00 0.00 31.99 1.28
1249 2771 5.598005 CCCCATTCTCTTTGGTTGCATTATA 59.402 40.000 0.00 0.00 31.99 0.98
1250 2772 6.268387 CCCCATTCTCTTTGGTTGCATTATAT 59.732 38.462 0.00 0.00 31.99 0.86
1251 2773 7.149973 CCCATTCTCTTTGGTTGCATTATATG 58.850 38.462 0.00 0.00 31.99 1.78
1252 2774 7.149973 CCATTCTCTTTGGTTGCATTATATGG 58.850 38.462 0.00 0.00 0.00 2.74
1253 2775 7.201938 CCATTCTCTTTGGTTGCATTATATGGT 60.202 37.037 0.00 0.00 0.00 3.55
1254 2776 6.942532 TCTCTTTGGTTGCATTATATGGTC 57.057 37.500 0.00 0.00 0.00 4.02
1255 2777 6.662755 TCTCTTTGGTTGCATTATATGGTCT 58.337 36.000 0.00 0.00 0.00 3.85
1256 2778 7.801104 TCTCTTTGGTTGCATTATATGGTCTA 58.199 34.615 0.00 0.00 0.00 2.59
1257 2779 8.439971 TCTCTTTGGTTGCATTATATGGTCTAT 58.560 33.333 0.00 0.00 0.00 1.98
1258 2780 8.621532 TCTTTGGTTGCATTATATGGTCTATC 57.378 34.615 0.00 0.00 0.00 2.08
1261 2783 6.475504 TGGTTGCATTATATGGTCTATCAGG 58.524 40.000 0.00 0.00 0.00 3.86
1278 2800 3.031013 TCAGGCTTCCATCTCGTATTGA 58.969 45.455 0.00 0.00 0.00 2.57
1279 2801 3.068732 TCAGGCTTCCATCTCGTATTGAG 59.931 47.826 0.00 0.00 46.72 3.02
1284 2806 4.870426 GCTTCCATCTCGTATTGAGTGAAA 59.130 41.667 0.00 0.00 45.46 2.69
1338 2860 3.501019 GGTGGGGAATATGAATGCTCCAT 60.501 47.826 0.00 0.00 0.00 3.41
1342 2864 6.267471 GTGGGGAATATGAATGCTCCATTTTA 59.733 38.462 0.00 0.00 33.90 1.52
1343 2865 7.018150 TGGGGAATATGAATGCTCCATTTTAT 58.982 34.615 0.00 0.00 33.90 1.40
1415 3337 5.453339 CCCAACTTGACATATACGATCAGGT 60.453 44.000 0.00 0.00 34.46 4.00
1454 3376 0.929244 ATAATCCACCTTGGGCAGCT 59.071 50.000 0.00 0.00 38.32 4.24
1536 3459 5.411361 GGGGAAATTATGAACTTTTGGCAAC 59.589 40.000 0.00 0.00 0.00 4.17
1553 3476 2.418280 GCAACCAAACACAAAAGTTGGG 59.582 45.455 6.61 1.80 46.19 4.12
1562 3485 3.642848 ACACAAAAGTTGGGATTGCAGAT 59.357 39.130 0.00 0.00 37.55 2.90
1577 3500 5.943349 TTGCAGATCAATCCCAATTTCAT 57.057 34.783 0.00 0.00 0.00 2.57
1616 3539 1.344114 TCCAAATTTGCAAGGACAGCC 59.656 47.619 12.92 0.00 0.00 4.85
1724 3656 6.375174 TGGATTTGGATTGTGTCATGTTCTAG 59.625 38.462 0.00 0.00 0.00 2.43
1739 3671 6.878923 TCATGTTCTAGAACTATTTGTGGTGG 59.121 38.462 30.47 11.82 41.67 4.61
1740 3672 6.182507 TGTTCTAGAACTATTTGTGGTGGT 57.817 37.500 30.47 0.00 41.67 4.16
1741 3673 5.995282 TGTTCTAGAACTATTTGTGGTGGTG 59.005 40.000 30.47 0.00 41.67 4.17
1742 3674 5.160607 TCTAGAACTATTTGTGGTGGTGG 57.839 43.478 0.00 0.00 0.00 4.61
1743 3675 3.876309 AGAACTATTTGTGGTGGTGGT 57.124 42.857 0.00 0.00 0.00 4.16
1744 3676 4.986054 AGAACTATTTGTGGTGGTGGTA 57.014 40.909 0.00 0.00 0.00 3.25
1745 3677 4.648651 AGAACTATTTGTGGTGGTGGTAC 58.351 43.478 0.00 0.00 0.00 3.34
1746 3678 4.349930 AGAACTATTTGTGGTGGTGGTACT 59.650 41.667 0.00 0.00 0.00 2.73
2014 3952 0.254462 TTGAGTGGTGTGTTGGCTCA 59.746 50.000 0.00 0.00 34.80 4.26
2129 4076 6.251549 TGCATTTTTAAAAAGTTGCCGTTTC 58.748 32.000 25.44 7.91 34.58 2.78
2221 4174 8.715191 AGTATCTCTGTGCTAAAATTTCTCTG 57.285 34.615 0.00 0.00 0.00 3.35
2263 4216 1.069906 GCAGAAGTGTAAACTGTGCGG 60.070 52.381 5.17 0.00 34.60 5.69
2302 4255 3.198635 TCCATCTTTCGCTTCATTCTCCT 59.801 43.478 0.00 0.00 0.00 3.69
2393 4346 5.354513 GCTCAATAGGGTTAGGTTTCTTCAC 59.645 44.000 0.00 0.00 0.00 3.18
2474 4427 8.759481 AGTCATCTTATTGAGACTAGACATGA 57.241 34.615 0.00 0.00 39.40 3.07
2640 4609 5.897250 TGAGCTGTAAGATAACCATGTCCTA 59.103 40.000 0.00 0.00 34.07 2.94
2669 4638 5.009210 AGCACGCTTAAGTTTGGTGAATTAA 59.991 36.000 16.73 0.00 0.00 1.40
2670 4639 5.861787 GCACGCTTAAGTTTGGTGAATTAAT 59.138 36.000 16.73 0.00 0.00 1.40
2672 4641 5.861787 ACGCTTAAGTTTGGTGAATTAATGC 59.138 36.000 4.02 0.00 0.00 3.56
2686 4655 7.038231 GGTGAATTAATGCCTACTACTCCCTAT 60.038 40.741 0.00 0.00 0.00 2.57
2687 4656 9.032624 GTGAATTAATGCCTACTACTCCCTATA 57.967 37.037 0.00 0.00 0.00 1.31
2760 4729 8.497745 AGAACACATCCAGAAATCAGGTTATAT 58.502 33.333 0.00 0.00 0.00 0.86
2836 4805 3.744940 AGGACATGGACAAATCATGGT 57.255 42.857 0.00 0.00 44.42 3.55
2841 4810 5.395682 ACATGGACAAATCATGGTTTCAG 57.604 39.130 0.00 0.00 44.42 3.02
2894 4863 1.963515 GTTTCTGTTCATGGCTTGGGT 59.036 47.619 0.09 0.00 0.00 4.51
2951 4920 8.846211 CAAAGAAGAGGTAAAACATGTCCTAAA 58.154 33.333 0.00 0.00 0.00 1.85
2993 4962 7.373617 TGTTTCTTCATATGCTCAGGGTATA 57.626 36.000 0.00 0.00 0.00 1.47
2994 4963 7.445121 TGTTTCTTCATATGCTCAGGGTATAG 58.555 38.462 0.00 0.00 0.00 1.31
2995 4964 6.611613 TTCTTCATATGCTCAGGGTATAGG 57.388 41.667 0.00 0.00 0.00 2.57
3026 4995 5.062528 TCAATGGCAAAAGAAAAATGGGAC 58.937 37.500 0.00 0.00 0.00 4.46
3062 5031 3.511146 CCCAAACTGCAACCTTGATATGT 59.489 43.478 4.15 0.00 0.00 2.29
3120 5090 7.094508 AGTTATCAGCAGATATATCCACTCG 57.905 40.000 9.18 3.37 36.65 4.18
3141 5111 7.062605 CACTCGAGCAAAATTAAGCAAATTCAT 59.937 33.333 13.61 0.00 36.76 2.57
3172 5142 0.893270 AAGCAAATAGGGTGCACGCA 60.893 50.000 32.29 19.76 44.74 5.24
3174 5144 0.732538 GCAAATAGGGTGCACGCAAC 60.733 55.000 32.29 13.20 41.80 4.17
3288 5258 8.671987 TGGATAAAATTTAGGAAAACCATGGA 57.328 30.769 21.47 0.00 0.00 3.41
3348 5318 1.017387 GGATCGGTGCCAAGAATCAC 58.983 55.000 0.00 0.00 0.00 3.06
3395 5365 5.997746 CACTCCTGTAATTCCAACTTTCAGA 59.002 40.000 0.00 0.00 0.00 3.27
3632 5603 1.679680 CAGATGGCTGCCAAATCGAAT 59.320 47.619 27.24 6.97 36.95 3.34
3781 5752 7.629157 TCCCATTAATGATGTTCTAGACACAA 58.371 34.615 17.23 0.00 42.04 3.33
3826 5797 7.739498 AAAAGACAATCGAAGCTAAAGGTTA 57.261 32.000 0.00 0.00 35.69 2.85
3906 5877 9.793259 TGACACTGATTTAGGAAGTAAGAAAAT 57.207 29.630 0.00 0.00 0.00 1.82
3908 5879 9.232473 ACACTGATTTAGGAAGTAAGAAAATCC 57.768 33.333 0.00 0.00 36.28 3.01
3915 5886 6.455690 AGGAAGTAAGAAAATCCAAGGTCT 57.544 37.500 0.00 0.00 34.30 3.85
3981 5952 3.190118 CCTGATTTCAAGTCCTTGCTGAC 59.810 47.826 2.09 0.00 40.24 3.51
4003 5974 4.400884 ACAGAAATGTGGTGTTGCTAACAA 59.599 37.500 3.74 0.00 44.16 2.83
4061 6032 3.095912 TGTTAGCTACAGCCTACAGGA 57.904 47.619 0.00 0.00 43.38 3.86
4068 6039 5.429130 AGCTACAGCCTACAGGATTAAAAC 58.571 41.667 0.00 0.00 43.38 2.43
4134 6105 4.650754 ACTGAACACGACTTAGTTGAGT 57.349 40.909 6.61 1.44 37.36 3.41
4156 6127 9.114952 TGAGTACAACATGAACTTTTGATTGTA 57.885 29.630 0.00 0.00 31.63 2.41
4241 6212 9.751542 CTTACTGGATGTCGAAACTAAAGATAT 57.248 33.333 0.00 0.00 0.00 1.63
4320 6291 4.978099 AGATGACTCACTTGAAATGTGGT 58.022 39.130 0.00 0.00 41.82 4.16
4323 6294 4.522114 TGACTCACTTGAAATGTGGTGAA 58.478 39.130 0.00 0.00 41.82 3.18
4324 6295 5.132502 TGACTCACTTGAAATGTGGTGAAT 58.867 37.500 0.00 0.00 41.82 2.57
4325 6296 5.008911 TGACTCACTTGAAATGTGGTGAATG 59.991 40.000 0.00 0.00 41.82 2.67
4326 6297 5.132502 ACTCACTTGAAATGTGGTGAATGA 58.867 37.500 0.00 0.00 41.82 2.57
4332 6651 6.153340 ACTTGAAATGTGGTGAATGATTAGGG 59.847 38.462 0.00 0.00 0.00 3.53
4386 6705 4.345859 TTTTCGTCTCTAAGCTTTCCCA 57.654 40.909 3.20 0.00 0.00 4.37
4431 6750 4.515191 TCTGTTTCCTTCGGTTCTGAATTG 59.485 41.667 0.00 0.00 0.00 2.32
4531 6857 9.961265 TGAACTGTCCTCGTACTAATATATTTG 57.039 33.333 2.68 4.28 0.00 2.32
4633 6980 1.098050 CTTTGGGCTCAAATCCTCCG 58.902 55.000 13.20 0.00 41.45 4.63
4641 6988 0.036732 TCAAATCCTCCGCAGCAAGT 59.963 50.000 0.00 0.00 0.00 3.16
4765 7112 4.104102 AGTGAGAGAGTAGCTATAGCCAGT 59.896 45.833 21.17 10.85 43.38 4.00
5313 7660 0.527565 GCACTGCCCAACTGGTTATG 59.472 55.000 0.00 0.00 36.04 1.90
5327 7674 4.770010 ACTGGTTATGTTACCCATGGTTTG 59.230 41.667 11.73 0.00 37.09 2.93
5396 7743 6.092670 CACATGTCAACATAAGGTGGAGTAAG 59.907 42.308 0.00 0.00 34.26 2.34
5444 7791 6.325028 TGATATTTTTGTGTCCTTGGTTGGAA 59.675 34.615 0.00 0.00 37.93 3.53
5456 7803 4.082571 CCTTGGTTGGAAGAGTGCATAAAG 60.083 45.833 0.00 0.00 0.00 1.85
5473 7820 7.589954 GTGCATAAAGGCCAGTTTTATTATACG 59.410 37.037 5.01 0.00 30.41 3.06
5626 7976 2.295885 GTGGAAGAATGCATCTCCTGG 58.704 52.381 18.31 0.00 37.42 4.45
5668 8018 6.274157 AGTGAAGTAGTGAACCATAGAGTG 57.726 41.667 0.00 0.00 0.00 3.51
5669 8019 6.010850 AGTGAAGTAGTGAACCATAGAGTGA 58.989 40.000 0.00 0.00 0.00 3.41
5670 8020 6.665680 AGTGAAGTAGTGAACCATAGAGTGAT 59.334 38.462 0.00 0.00 0.00 3.06
5671 8021 7.179338 AGTGAAGTAGTGAACCATAGAGTGATT 59.821 37.037 0.00 0.00 0.00 2.57
5672 8022 7.276658 GTGAAGTAGTGAACCATAGAGTGATTG 59.723 40.741 0.00 0.00 0.00 2.67
5673 8023 6.227298 AGTAGTGAACCATAGAGTGATTGG 57.773 41.667 0.00 0.00 36.56 3.16
5674 8024 3.878778 AGTGAACCATAGAGTGATTGGC 58.121 45.455 0.00 0.00 33.66 4.52
5675 8025 3.521126 AGTGAACCATAGAGTGATTGGCT 59.479 43.478 0.00 0.00 33.66 4.75
5676 8026 3.624861 GTGAACCATAGAGTGATTGGCTG 59.375 47.826 0.00 0.00 33.66 4.85
5677 8027 2.338577 ACCATAGAGTGATTGGCTGC 57.661 50.000 0.00 0.00 33.66 5.25
5678 8028 1.561076 ACCATAGAGTGATTGGCTGCA 59.439 47.619 0.50 0.00 33.66 4.41
5679 8029 1.945394 CCATAGAGTGATTGGCTGCAC 59.055 52.381 0.50 0.00 35.30 4.57
5681 8031 3.276857 CATAGAGTGATTGGCTGCACTT 58.723 45.455 0.50 3.41 44.77 3.16
5682 8032 1.818642 AGAGTGATTGGCTGCACTTC 58.181 50.000 0.50 0.00 44.77 3.01
5683 8033 1.072806 AGAGTGATTGGCTGCACTTCA 59.927 47.619 0.50 0.00 44.77 3.02
5684 8034 2.089980 GAGTGATTGGCTGCACTTCAT 58.910 47.619 0.50 0.00 44.77 2.57
5685 8035 2.089980 AGTGATTGGCTGCACTTCATC 58.910 47.619 0.50 0.00 42.33 2.92
5686 8036 2.089980 GTGATTGGCTGCACTTCATCT 58.910 47.619 0.50 0.00 32.44 2.90
5687 8037 2.490903 GTGATTGGCTGCACTTCATCTT 59.509 45.455 0.50 0.00 32.44 2.40
5688 8038 2.490509 TGATTGGCTGCACTTCATCTTG 59.509 45.455 0.50 0.00 0.00 3.02
5689 8039 1.985473 TTGGCTGCACTTCATCTTGT 58.015 45.000 0.50 0.00 0.00 3.16
5690 8040 2.857186 TGGCTGCACTTCATCTTGTA 57.143 45.000 0.50 0.00 0.00 2.41
5691 8041 2.426522 TGGCTGCACTTCATCTTGTAC 58.573 47.619 0.50 0.00 0.00 2.90
5692 8042 2.224499 TGGCTGCACTTCATCTTGTACA 60.224 45.455 0.50 0.00 0.00 2.90
5693 8043 2.417933 GGCTGCACTTCATCTTGTACAG 59.582 50.000 0.50 0.00 32.40 2.74
5694 8044 3.070018 GCTGCACTTCATCTTGTACAGT 58.930 45.455 0.00 0.00 31.99 3.55
5695 8045 3.120408 GCTGCACTTCATCTTGTACAGTG 60.120 47.826 0.00 0.04 38.32 3.66
5696 8046 4.309933 CTGCACTTCATCTTGTACAGTGA 58.690 43.478 11.96 7.93 37.63 3.41
5697 8047 4.702831 TGCACTTCATCTTGTACAGTGAA 58.297 39.130 11.96 13.80 37.63 3.18
5698 8048 4.511454 TGCACTTCATCTTGTACAGTGAAC 59.489 41.667 11.96 6.60 37.63 3.18
5699 8049 4.083802 GCACTTCATCTTGTACAGTGAACC 60.084 45.833 11.96 4.15 37.63 3.62
5700 8050 5.056480 CACTTCATCTTGTACAGTGAACCA 58.944 41.667 13.24 0.00 37.63 3.67
5701 8051 5.702670 CACTTCATCTTGTACAGTGAACCAT 59.297 40.000 13.24 3.91 37.63 3.55
5702 8052 6.873605 CACTTCATCTTGTACAGTGAACCATA 59.126 38.462 13.24 0.00 37.63 2.74
5703 8053 7.063898 CACTTCATCTTGTACAGTGAACCATAG 59.936 40.741 13.24 8.28 37.63 2.23
5704 8054 6.850752 TCATCTTGTACAGTGAACCATAGA 57.149 37.500 0.00 0.00 0.00 1.98
5705 8055 6.867550 TCATCTTGTACAGTGAACCATAGAG 58.132 40.000 0.00 0.00 0.00 2.43
5706 8056 6.437477 TCATCTTGTACAGTGAACCATAGAGT 59.563 38.462 0.00 0.00 0.00 3.24
5707 8057 6.025749 TCTTGTACAGTGAACCATAGAGTG 57.974 41.667 0.00 0.00 0.00 3.51
5731 8081 2.038952 TGGCTGCACTTCATCTTGTACT 59.961 45.455 0.50 0.00 0.00 2.73
5751 8104 4.197750 ACTCCGATCGACTTAGTGTGTAT 58.802 43.478 18.66 0.00 0.00 2.29
5772 8125 8.485591 GTGTATATAAAATACTTGACGCCAGAC 58.514 37.037 0.00 0.00 0.00 3.51
5790 8146 0.038526 ACGGTACAGAAGAAGCCACG 60.039 55.000 0.00 0.00 0.00 4.94
5795 8151 3.595691 CAGAAGAAGCCACGTCTGT 57.404 52.632 12.74 0.00 39.93 3.41
5797 8153 1.528586 CAGAAGAAGCCACGTCTGTTG 59.471 52.381 12.74 0.00 39.93 3.33
5800 8156 0.882042 AGAAGCCACGTCTGTTGCAG 60.882 55.000 0.00 0.00 39.14 4.41
5813 8169 5.220472 CGTCTGTTGCAGTTATCATAACCTG 60.220 44.000 3.76 3.77 32.61 4.00
5814 8170 5.874810 GTCTGTTGCAGTTATCATAACCTGA 59.125 40.000 3.76 0.00 33.82 3.86
5855 8211 6.223852 ACCTCAACTAACTGTCAGTGTTATG 58.776 40.000 6.18 4.69 30.73 1.90
5858 8214 5.696270 TCAACTAACTGTCAGTGTTATGCAG 59.304 40.000 6.18 0.00 33.40 4.41
5861 8217 2.146342 ACTGTCAGTGTTATGCAGTGC 58.854 47.619 8.58 8.58 45.69 4.40
5867 8223 4.155826 GTCAGTGTTATGCAGTGCCATTAA 59.844 41.667 13.72 5.46 45.69 1.40
5871 8227 5.943416 AGTGTTATGCAGTGCCATTAAGTTA 59.057 36.000 13.72 0.00 0.00 2.24
5872 8228 6.603201 AGTGTTATGCAGTGCCATTAAGTTAT 59.397 34.615 13.72 0.00 0.00 1.89
5876 8232 5.828299 TGCAGTGCCATTAAGTTATTACC 57.172 39.130 13.72 0.00 0.00 2.85
5877 8233 5.505780 TGCAGTGCCATTAAGTTATTACCT 58.494 37.500 13.72 0.00 0.00 3.08
5878 8234 5.949354 TGCAGTGCCATTAAGTTATTACCTT 59.051 36.000 13.72 0.00 0.00 3.50
5879 8235 7.113437 TGCAGTGCCATTAAGTTATTACCTTA 58.887 34.615 13.72 0.00 0.00 2.69
5881 8237 8.463607 GCAGTGCCATTAAGTTATTACCTTAAA 58.536 33.333 2.85 0.00 37.77 1.52
5925 8285 6.371278 AGATGGTATCTGATTGCCTTCATTT 58.629 36.000 19.22 5.91 38.44 2.32
5931 8291 8.800332 GGTATCTGATTGCCTTCATTTGATTAT 58.200 33.333 0.00 0.00 0.00 1.28
5988 8348 1.679680 TGGGCTTAGTTCCTATCGACG 59.320 52.381 0.00 0.00 0.00 5.12
6009 8369 3.435327 CGTGGTGAAGTTATTTGCAGCTA 59.565 43.478 0.00 0.00 0.00 3.32
6029 8391 9.278734 GCAGCTAATGACAAAATCTTAACTAAC 57.721 33.333 0.00 0.00 0.00 2.34
6048 8410 0.991344 CGTTTCCAAATTGATGCGGC 59.009 50.000 0.00 0.00 0.00 6.53
6055 8417 1.994779 CAAATTGATGCGGCTTGGTTC 59.005 47.619 0.00 0.00 0.00 3.62
6090 8452 9.622004 CTACAGATACACGTTTCTTTCTTTAGA 57.378 33.333 0.00 0.00 0.00 2.10
6096 8458 7.417496 ACACGTTTCTTTCTTTAGATGGTAC 57.583 36.000 0.00 0.00 0.00 3.34
6151 8513 5.415701 GGTTACTTTCTGATGATGCAGGAAA 59.584 40.000 0.00 0.00 33.17 3.13
6225 8587 8.806146 AGTTACTTTCTTAAACATGCCAATCAT 58.194 29.630 0.00 0.00 35.31 2.45
6408 8772 5.705441 TGAACAATAGGTCTGGATGTTTCAC 59.295 40.000 0.00 0.00 34.59 3.18
6422 8786 8.287439 TGGATGTTTCACTTTGAAAACTAGAA 57.713 30.769 0.00 0.00 46.53 2.10
6440 8804 8.919777 AACTAGAATATTGTAGGTTATTGGCC 57.080 34.615 20.35 0.00 0.00 5.36
6441 8805 8.041143 ACTAGAATATTGTAGGTTATTGGCCA 57.959 34.615 20.35 0.00 0.00 5.36
6467 8831 1.075836 AGGAGGCGAGACAGTGACT 59.924 57.895 0.00 0.00 0.00 3.41
6468 8832 0.328592 AGGAGGCGAGACAGTGACTA 59.671 55.000 0.00 0.00 0.00 2.59
6469 8833 0.452585 GGAGGCGAGACAGTGACTAC 59.547 60.000 0.00 0.00 0.00 2.73
6475 8839 3.002862 GGCGAGACAGTGACTACATAGAG 59.997 52.174 0.00 0.00 0.00 2.43
6527 8891 8.316640 AGTCTTTACATGCTTCTTCTTACTTG 57.683 34.615 0.00 0.00 0.00 3.16
6554 8919 7.434013 GTCGATCATGTTTGTTTTGGTTTAAGT 59.566 33.333 0.00 0.00 0.00 2.24
6556 8921 6.654793 TCATGTTTGTTTTGGTTTAAGTGC 57.345 33.333 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.303888 CAGCCAACCACTCTGCCAT 60.304 57.895 0.00 0.00 0.00 4.40
31 32 5.275067 AGTCTCATTGCCAGAAGATCTAC 57.725 43.478 0.00 0.00 0.00 2.59
61 62 4.917906 AAAAGTGTGAGAGCTAGGGATT 57.082 40.909 0.00 0.00 0.00 3.01
67 68 9.561069 AAAGAAAGATAAAAAGTGTGAGAGCTA 57.439 29.630 0.00 0.00 0.00 3.32
452 1919 8.662369 TTTTCGGAATATGTTTTGAATACACG 57.338 30.769 0.00 0.00 0.00 4.49
459 1926 9.734620 GATCATGATTTTCGGAATATGTTTTGA 57.265 29.630 10.14 0.00 0.00 2.69
460 1927 8.684655 CGATCATGATTTTCGGAATATGTTTTG 58.315 33.333 10.14 0.00 0.00 2.44
461 1928 8.405531 ACGATCATGATTTTCGGAATATGTTTT 58.594 29.630 18.55 0.00 37.20 2.43
462 1929 7.857389 CACGATCATGATTTTCGGAATATGTTT 59.143 33.333 18.55 0.00 37.20 2.83
463 1930 7.012327 ACACGATCATGATTTTCGGAATATGTT 59.988 33.333 18.55 0.00 37.20 2.71
464 1931 6.483307 ACACGATCATGATTTTCGGAATATGT 59.517 34.615 18.55 11.55 37.20 2.29
465 1932 6.891624 ACACGATCATGATTTTCGGAATATG 58.108 36.000 18.55 11.03 37.20 1.78
466 1933 8.777865 ATACACGATCATGATTTTCGGAATAT 57.222 30.769 18.55 11.14 37.20 1.28
467 1934 8.601845 AATACACGATCATGATTTTCGGAATA 57.398 30.769 18.55 9.72 37.20 1.75
468 1935 7.226523 TGAATACACGATCATGATTTTCGGAAT 59.773 33.333 18.55 8.17 37.20 3.01
469 1936 6.536941 TGAATACACGATCATGATTTTCGGAA 59.463 34.615 18.55 6.53 37.20 4.30
470 1937 6.045955 TGAATACACGATCATGATTTTCGGA 58.954 36.000 18.55 6.65 37.20 4.55
471 1938 6.285790 TGAATACACGATCATGATTTTCGG 57.714 37.500 18.55 11.29 37.20 4.30
472 1939 8.515473 GTTTTGAATACACGATCATGATTTTCG 58.485 33.333 10.14 12.46 38.76 3.46
473 1940 9.340695 TGTTTTGAATACACGATCATGATTTTC 57.659 29.630 10.14 7.38 0.00 2.29
474 1941 9.859427 ATGTTTTGAATACACGATCATGATTTT 57.141 25.926 10.14 0.00 0.00 1.82
479 1946 9.385902 GGAATATGTTTTGAATACACGATCATG 57.614 33.333 0.00 0.00 0.00 3.07
480 1947 8.282592 CGGAATATGTTTTGAATACACGATCAT 58.717 33.333 0.00 0.00 0.00 2.45
481 1948 7.254624 CCGGAATATGTTTTGAATACACGATCA 60.255 37.037 0.00 0.00 0.00 2.92
482 1949 7.042321 TCCGGAATATGTTTTGAATACACGATC 60.042 37.037 0.00 0.00 0.00 3.69
483 1950 6.764085 TCCGGAATATGTTTTGAATACACGAT 59.236 34.615 0.00 0.00 0.00 3.73
484 1951 6.107343 TCCGGAATATGTTTTGAATACACGA 58.893 36.000 0.00 0.00 0.00 4.35
727 2201 6.203338 TGAGAACGGTTAAAGTCAAATACCAC 59.797 38.462 0.00 0.00 0.00 4.16
728 2202 6.289834 TGAGAACGGTTAAAGTCAAATACCA 58.710 36.000 0.00 0.00 0.00 3.25
729 2203 6.128363 CCTGAGAACGGTTAAAGTCAAATACC 60.128 42.308 0.00 0.00 0.00 2.73
730 2204 6.426025 ACCTGAGAACGGTTAAAGTCAAATAC 59.574 38.462 0.00 0.00 0.00 1.89
731 2205 6.527423 ACCTGAGAACGGTTAAAGTCAAATA 58.473 36.000 0.00 0.00 0.00 1.40
732 2206 5.374071 ACCTGAGAACGGTTAAAGTCAAAT 58.626 37.500 0.00 0.00 0.00 2.32
733 2207 4.773013 ACCTGAGAACGGTTAAAGTCAAA 58.227 39.130 0.00 0.00 0.00 2.69
734 2208 4.411256 ACCTGAGAACGGTTAAAGTCAA 57.589 40.909 0.00 0.00 0.00 3.18
735 2209 4.124238 CAACCTGAGAACGGTTAAAGTCA 58.876 43.478 0.00 0.00 42.63 3.41
736 2210 3.059120 GCAACCTGAGAACGGTTAAAGTC 60.059 47.826 0.00 0.00 42.63 3.01
737 2211 2.876550 GCAACCTGAGAACGGTTAAAGT 59.123 45.455 0.00 0.00 42.63 2.66
738 2212 3.139077 AGCAACCTGAGAACGGTTAAAG 58.861 45.455 0.00 0.00 42.63 1.85
739 2213 3.202829 AGCAACCTGAGAACGGTTAAA 57.797 42.857 0.00 0.00 42.63 1.52
740 2214 2.922740 AGCAACCTGAGAACGGTTAA 57.077 45.000 0.00 0.00 42.63 2.01
741 2215 2.762745 GAAGCAACCTGAGAACGGTTA 58.237 47.619 0.00 0.00 42.63 2.85
742 2216 1.594331 GAAGCAACCTGAGAACGGTT 58.406 50.000 0.00 0.00 45.26 4.44
743 2217 0.600255 CGAAGCAACCTGAGAACGGT 60.600 55.000 0.00 0.00 35.97 4.83
744 2218 0.600255 ACGAAGCAACCTGAGAACGG 60.600 55.000 0.00 0.00 0.00 4.44
745 2219 1.070577 CAACGAAGCAACCTGAGAACG 60.071 52.381 0.00 0.00 0.00 3.95
746 2220 1.940613 ACAACGAAGCAACCTGAGAAC 59.059 47.619 0.00 0.00 0.00 3.01
747 2221 1.939934 CACAACGAAGCAACCTGAGAA 59.060 47.619 0.00 0.00 0.00 2.87
748 2222 1.138069 TCACAACGAAGCAACCTGAGA 59.862 47.619 0.00 0.00 0.00 3.27
749 2223 1.581934 TCACAACGAAGCAACCTGAG 58.418 50.000 0.00 0.00 0.00 3.35
750 2224 1.668751 GTTCACAACGAAGCAACCTGA 59.331 47.619 0.00 0.00 33.09 3.86
751 2225 2.105323 GTTCACAACGAAGCAACCTG 57.895 50.000 0.00 0.00 33.09 4.00
762 2236 0.452784 GATTCAGGCGCGTTCACAAC 60.453 55.000 8.43 0.00 0.00 3.32
763 2237 1.573829 GGATTCAGGCGCGTTCACAA 61.574 55.000 8.43 0.00 0.00 3.33
764 2238 2.032634 GGATTCAGGCGCGTTCACA 61.033 57.895 8.43 0.00 0.00 3.58
765 2239 2.785258 GGATTCAGGCGCGTTCAC 59.215 61.111 8.43 0.00 0.00 3.18
766 2240 2.813474 CGGATTCAGGCGCGTTCA 60.813 61.111 8.43 0.00 0.00 3.18
767 2241 3.564027 CCGGATTCAGGCGCGTTC 61.564 66.667 8.43 0.00 0.00 3.95
768 2242 4.077184 TCCGGATTCAGGCGCGTT 62.077 61.111 8.43 0.00 0.00 4.84
769 2243 4.514577 CTCCGGATTCAGGCGCGT 62.515 66.667 3.57 0.00 0.00 6.01
771 2245 2.869503 TTTCCTCCGGATTCAGGCGC 62.870 60.000 3.57 0.00 0.00 6.53
772 2246 0.179045 ATTTCCTCCGGATTCAGGCG 60.179 55.000 3.57 0.00 0.00 5.52
773 2247 1.598882 GATTTCCTCCGGATTCAGGC 58.401 55.000 3.57 0.00 0.00 4.85
774 2248 2.262423 GGATTTCCTCCGGATTCAGG 57.738 55.000 3.57 2.00 33.29 3.86
783 2257 1.877165 GTCGTCGCGGATTTCCTCC 60.877 63.158 6.13 0.00 41.07 4.30
784 2258 0.866483 GAGTCGTCGCGGATTTCCTC 60.866 60.000 6.13 0.86 0.00 3.71
785 2259 1.139095 GAGTCGTCGCGGATTTCCT 59.861 57.895 6.13 0.00 0.00 3.36
786 2260 0.379669 TAGAGTCGTCGCGGATTTCC 59.620 55.000 6.13 0.00 0.00 3.13
787 2261 1.063764 ACTAGAGTCGTCGCGGATTTC 59.936 52.381 6.13 0.00 0.00 2.17
788 2262 1.093159 ACTAGAGTCGTCGCGGATTT 58.907 50.000 6.13 0.00 0.00 2.17
789 2263 0.377554 CACTAGAGTCGTCGCGGATT 59.622 55.000 6.13 0.00 0.00 3.01
790 2264 0.461516 TCACTAGAGTCGTCGCGGAT 60.462 55.000 6.13 0.00 0.00 4.18
791 2265 1.079612 TCACTAGAGTCGTCGCGGA 60.080 57.895 6.13 0.00 0.00 5.54
792 2266 1.060622 GTCACTAGAGTCGTCGCGG 59.939 63.158 6.13 0.00 0.00 6.46
793 2267 0.025256 GAGTCACTAGAGTCGTCGCG 59.975 60.000 0.00 0.00 34.71 5.87
794 2268 0.374410 GGAGTCACTAGAGTCGTCGC 59.626 60.000 0.00 0.00 43.75 5.19
795 2269 1.008329 GGGAGTCACTAGAGTCGTCG 58.992 60.000 0.00 0.00 43.75 5.12
796 2270 2.110901 TGGGAGTCACTAGAGTCGTC 57.889 55.000 0.00 0.00 43.75 4.20
797 2271 2.161030 GTTGGGAGTCACTAGAGTCGT 58.839 52.381 0.00 0.00 43.75 4.34
798 2272 2.438411 AGTTGGGAGTCACTAGAGTCG 58.562 52.381 0.00 0.00 43.75 4.18
799 2273 4.083565 AGAAGTTGGGAGTCACTAGAGTC 58.916 47.826 0.00 0.00 42.39 3.36
800 2274 4.083565 GAGAAGTTGGGAGTCACTAGAGT 58.916 47.826 0.00 0.00 0.00 3.24
801 2275 4.340617 AGAGAAGTTGGGAGTCACTAGAG 58.659 47.826 0.00 0.00 0.00 2.43
802 2276 4.202577 TGAGAGAAGTTGGGAGTCACTAGA 60.203 45.833 0.00 0.00 0.00 2.43
803 2277 4.082845 TGAGAGAAGTTGGGAGTCACTAG 58.917 47.826 0.00 0.00 0.00 2.57
804 2278 4.114015 TGAGAGAAGTTGGGAGTCACTA 57.886 45.455 0.00 0.00 0.00 2.74
805 2279 2.964209 TGAGAGAAGTTGGGAGTCACT 58.036 47.619 0.00 0.00 0.00 3.41
806 2280 3.753294 TTGAGAGAAGTTGGGAGTCAC 57.247 47.619 0.00 0.00 0.00 3.67
807 2281 4.982241 AATTGAGAGAAGTTGGGAGTCA 57.018 40.909 0.00 0.00 0.00 3.41
808 2282 5.532779 ACAAAATTGAGAGAAGTTGGGAGTC 59.467 40.000 0.00 0.00 0.00 3.36
809 2283 5.449553 ACAAAATTGAGAGAAGTTGGGAGT 58.550 37.500 0.00 0.00 0.00 3.85
810 2284 6.396829 AACAAAATTGAGAGAAGTTGGGAG 57.603 37.500 0.00 0.00 0.00 4.30
811 2285 6.790232 AAACAAAATTGAGAGAAGTTGGGA 57.210 33.333 0.00 0.00 0.00 4.37
812 2286 7.848223 AAAAACAAAATTGAGAGAAGTTGGG 57.152 32.000 0.00 0.00 0.00 4.12
840 2314 8.469309 AATTGAGAGAAGTTGATCCTCAAAAA 57.531 30.769 10.90 0.00 44.03 1.94
841 2315 8.469309 AAATTGAGAGAAGTTGATCCTCAAAA 57.531 30.769 10.90 1.09 44.03 2.44
842 2316 9.745018 ATAAATTGAGAGAAGTTGATCCTCAAA 57.255 29.630 10.90 1.37 44.03 2.69
843 2317 9.170734 CATAAATTGAGAGAAGTTGATCCTCAA 57.829 33.333 9.72 9.72 44.65 3.02
844 2318 7.772292 CCATAAATTGAGAGAAGTTGATCCTCA 59.228 37.037 0.00 0.00 32.67 3.86
845 2319 7.255070 GCCATAAATTGAGAGAAGTTGATCCTC 60.255 40.741 0.00 0.00 0.00 3.71
846 2320 6.545298 GCCATAAATTGAGAGAAGTTGATCCT 59.455 38.462 0.00 0.00 0.00 3.24
847 2321 6.238869 GGCCATAAATTGAGAGAAGTTGATCC 60.239 42.308 0.00 0.00 0.00 3.36
848 2322 6.238869 GGGCCATAAATTGAGAGAAGTTGATC 60.239 42.308 4.39 0.00 0.00 2.92
849 2323 5.595952 GGGCCATAAATTGAGAGAAGTTGAT 59.404 40.000 4.39 0.00 0.00 2.57
850 2324 4.949856 GGGCCATAAATTGAGAGAAGTTGA 59.050 41.667 4.39 0.00 0.00 3.18
851 2325 4.201950 CGGGCCATAAATTGAGAGAAGTTG 60.202 45.833 4.39 0.00 0.00 3.16
852 2326 3.947834 CGGGCCATAAATTGAGAGAAGTT 59.052 43.478 4.39 0.00 0.00 2.66
853 2327 3.054361 ACGGGCCATAAATTGAGAGAAGT 60.054 43.478 4.39 0.00 0.00 3.01
854 2328 3.313526 CACGGGCCATAAATTGAGAGAAG 59.686 47.826 4.39 0.00 0.00 2.85
855 2329 3.278574 CACGGGCCATAAATTGAGAGAA 58.721 45.455 4.39 0.00 0.00 2.87
856 2330 2.917933 CACGGGCCATAAATTGAGAGA 58.082 47.619 4.39 0.00 0.00 3.10
857 2331 1.334869 GCACGGGCCATAAATTGAGAG 59.665 52.381 4.39 0.00 0.00 3.20
858 2332 1.064758 AGCACGGGCCATAAATTGAGA 60.065 47.619 5.73 0.00 42.56 3.27
859 2333 1.334869 GAGCACGGGCCATAAATTGAG 59.665 52.381 5.73 0.00 42.56 3.02
860 2334 1.340502 TGAGCACGGGCCATAAATTGA 60.341 47.619 5.73 0.00 42.56 2.57
861 2335 1.102154 TGAGCACGGGCCATAAATTG 58.898 50.000 5.73 0.00 42.56 2.32
862 2336 1.102978 GTGAGCACGGGCCATAAATT 58.897 50.000 5.73 0.00 42.56 1.82
863 2337 0.255890 AGTGAGCACGGGCCATAAAT 59.744 50.000 5.73 0.00 42.56 1.40
864 2338 0.906066 TAGTGAGCACGGGCCATAAA 59.094 50.000 5.73 0.00 42.56 1.40
865 2339 0.177141 GTAGTGAGCACGGGCCATAA 59.823 55.000 5.73 0.00 42.56 1.90
866 2340 1.820581 GTAGTGAGCACGGGCCATA 59.179 57.895 5.73 0.00 42.56 2.74
867 2341 2.584608 GTAGTGAGCACGGGCCAT 59.415 61.111 5.73 0.00 42.56 4.40
868 2342 4.063967 CGTAGTGAGCACGGGCCA 62.064 66.667 5.73 0.00 42.56 5.36
870 2344 4.735132 TGCGTAGTGAGCACGGGC 62.735 66.667 0.00 0.00 40.01 6.13
871 2345 1.225376 TTTTGCGTAGTGAGCACGGG 61.225 55.000 0.00 0.00 45.10 5.28
872 2346 0.110823 GTTTTGCGTAGTGAGCACGG 60.111 55.000 0.00 0.00 45.10 4.94
873 2347 0.110823 GGTTTTGCGTAGTGAGCACG 60.111 55.000 0.00 0.00 45.10 5.34
874 2348 0.941542 TGGTTTTGCGTAGTGAGCAC 59.058 50.000 0.00 0.00 45.10 4.40
875 2349 1.332375 GTTGGTTTTGCGTAGTGAGCA 59.668 47.619 0.00 0.00 43.59 4.26
876 2350 1.334689 GGTTGGTTTTGCGTAGTGAGC 60.335 52.381 0.00 0.00 0.00 4.26
877 2351 1.070175 CGGTTGGTTTTGCGTAGTGAG 60.070 52.381 0.00 0.00 0.00 3.51
878 2352 0.938713 CGGTTGGTTTTGCGTAGTGA 59.061 50.000 0.00 0.00 0.00 3.41
879 2353 0.659123 GCGGTTGGTTTTGCGTAGTG 60.659 55.000 0.00 0.00 0.00 2.74
880 2354 1.096386 TGCGGTTGGTTTTGCGTAGT 61.096 50.000 0.00 0.00 0.00 2.73
881 2355 0.659123 GTGCGGTTGGTTTTGCGTAG 60.659 55.000 0.00 0.00 0.00 3.51
882 2356 1.355916 GTGCGGTTGGTTTTGCGTA 59.644 52.632 0.00 0.00 0.00 4.42
883 2357 2.103340 GTGCGGTTGGTTTTGCGT 59.897 55.556 0.00 0.00 0.00 5.24
884 2358 2.656973 GGTGCGGTTGGTTTTGCG 60.657 61.111 0.00 0.00 0.00 4.85
885 2359 2.279851 GGGTGCGGTTGGTTTTGC 60.280 61.111 0.00 0.00 0.00 3.68
886 2360 1.227118 GTGGGTGCGGTTGGTTTTG 60.227 57.895 0.00 0.00 0.00 2.44
887 2361 2.776913 CGTGGGTGCGGTTGGTTTT 61.777 57.895 0.00 0.00 0.00 2.43
888 2362 3.213402 CGTGGGTGCGGTTGGTTT 61.213 61.111 0.00 0.00 0.00 3.27
943 2417 1.360551 CGATCACTACTCGGGCCAG 59.639 63.158 4.39 0.00 32.58 4.85
970 2444 4.269523 AAAGGCAGCAGCGGGTCA 62.270 61.111 0.00 0.00 43.41 4.02
978 2452 2.357034 GTCGGACGAAAGGCAGCA 60.357 61.111 0.00 0.00 45.40 4.41
981 2455 3.235481 TGGGTCGGACGAAAGGCA 61.235 61.111 1.43 0.00 45.40 4.75
985 2459 4.668118 GCGGTGGGTCGGACGAAA 62.668 66.667 1.43 0.00 0.00 3.46
1122 2638 2.527624 TGCAGCTCCAGGTGGACT 60.528 61.111 7.84 0.00 43.24 3.85
1130 2646 2.431683 GTCCTTGGTGCAGCTCCA 59.568 61.111 18.08 12.37 0.00 3.86
1132 2648 3.426568 GCGTCCTTGGTGCAGCTC 61.427 66.667 18.08 2.03 0.00 4.09
1157 2679 2.554893 CGAGAGAAGCCTACCTATGTCC 59.445 54.545 0.00 0.00 0.00 4.02
1193 2715 0.179100 GCCTGCTGCTTCGATGAGTA 60.179 55.000 0.00 0.00 36.87 2.59
1195 2717 2.523507 CGCCTGCTGCTTCGATGAG 61.524 63.158 0.00 0.00 38.05 2.90
1199 2721 4.441695 CTCCGCCTGCTGCTTCGA 62.442 66.667 0.00 0.00 38.05 3.71
1223 2745 1.549950 GCAACCAAAGAGAATGGGGGA 60.550 52.381 0.00 0.00 42.48 4.81
1228 2750 7.719483 ACCATATAATGCAACCAAAGAGAATG 58.281 34.615 0.00 0.00 0.00 2.67
1232 2754 6.949352 AGACCATATAATGCAACCAAAGAG 57.051 37.500 0.00 0.00 0.00 2.85
1241 2763 6.378661 AAGCCTGATAGACCATATAATGCA 57.621 37.500 0.00 0.00 0.00 3.96
1242 2764 5.819901 GGAAGCCTGATAGACCATATAATGC 59.180 44.000 0.00 0.00 0.00 3.56
1243 2765 6.950842 TGGAAGCCTGATAGACCATATAATG 58.049 40.000 0.00 0.00 0.00 1.90
1244 2766 7.626890 AGATGGAAGCCTGATAGACCATATAAT 59.373 37.037 0.00 0.00 38.09 1.28
1245 2767 6.962311 AGATGGAAGCCTGATAGACCATATAA 59.038 38.462 0.00 0.00 38.09 0.98
1246 2768 6.506661 AGATGGAAGCCTGATAGACCATATA 58.493 40.000 0.00 0.00 38.09 0.86
1247 2769 5.348833 AGATGGAAGCCTGATAGACCATAT 58.651 41.667 0.00 0.00 38.09 1.78
1248 2770 4.756564 AGATGGAAGCCTGATAGACCATA 58.243 43.478 0.00 0.00 38.09 2.74
1249 2771 3.582208 GAGATGGAAGCCTGATAGACCAT 59.418 47.826 0.00 0.00 40.21 3.55
1250 2772 2.968574 GAGATGGAAGCCTGATAGACCA 59.031 50.000 0.00 0.00 0.00 4.02
1251 2773 2.029470 CGAGATGGAAGCCTGATAGACC 60.029 54.545 0.00 0.00 0.00 3.85
1252 2774 2.625790 ACGAGATGGAAGCCTGATAGAC 59.374 50.000 0.00 0.00 0.00 2.59
1253 2775 2.950781 ACGAGATGGAAGCCTGATAGA 58.049 47.619 0.00 0.00 0.00 1.98
1254 2776 5.047731 TCAATACGAGATGGAAGCCTGATAG 60.048 44.000 0.00 0.00 0.00 2.08
1255 2777 4.832823 TCAATACGAGATGGAAGCCTGATA 59.167 41.667 0.00 0.00 0.00 2.15
1256 2778 3.643320 TCAATACGAGATGGAAGCCTGAT 59.357 43.478 0.00 0.00 0.00 2.90
1257 2779 3.031013 TCAATACGAGATGGAAGCCTGA 58.969 45.455 0.00 0.00 0.00 3.86
1258 2780 3.181471 ACTCAATACGAGATGGAAGCCTG 60.181 47.826 0.00 0.00 45.45 4.85
1261 2783 4.046938 TCACTCAATACGAGATGGAAGC 57.953 45.455 0.00 0.00 45.45 3.86
1278 2800 6.223120 GCAAAGACCACCATAAAATTTCACT 58.777 36.000 0.00 0.00 0.00 3.41
1279 2801 5.118510 CGCAAAGACCACCATAAAATTTCAC 59.881 40.000 0.00 0.00 0.00 3.18
1284 2806 4.331968 TCTCGCAAAGACCACCATAAAAT 58.668 39.130 0.00 0.00 0.00 1.82
1342 2864 9.265862 TGTTCATATGGGGAGAAAATTAACAAT 57.734 29.630 2.13 0.00 0.00 2.71
1343 2865 8.657387 TGTTCATATGGGGAGAAAATTAACAA 57.343 30.769 2.13 0.00 0.00 2.83
1354 3265 9.717942 TTTTTGTAATTTTGTTCATATGGGGAG 57.282 29.630 2.13 0.00 0.00 4.30
1383 3294 6.537301 CGTATATGTCAAGTTGGGTGTATTGT 59.463 38.462 2.34 0.00 0.00 2.71
1423 3345 8.220559 CCCAAGGTGGATTATATTCCCTATATG 58.779 40.741 10.47 4.66 40.96 1.78
1424 3346 7.147123 GCCCAAGGTGGATTATATTCCCTATAT 60.147 40.741 10.47 0.00 40.96 0.86
1454 3376 8.271458 TGCCTATTCCTCAAACAATAATGTCTA 58.729 33.333 0.00 0.00 39.40 2.59
1536 3459 3.312146 GCAATCCCAACTTTTGTGTTTGG 59.688 43.478 0.00 0.00 34.99 3.28
1577 3500 4.682563 TGGAGGCCCAATTCAAATTCTTA 58.317 39.130 0.00 0.00 40.09 2.10
1616 3539 0.038343 CATTTGGCTTGTGGAACGGG 60.038 55.000 0.00 0.00 42.39 5.28
1724 3656 4.454504 CAGTACCACCACCACAAATAGTTC 59.545 45.833 0.00 0.00 0.00 3.01
1739 3671 0.611714 CCACCCTACCACAGTACCAC 59.388 60.000 0.00 0.00 0.00 4.16
1740 3672 0.545787 CCCACCCTACCACAGTACCA 60.546 60.000 0.00 0.00 0.00 3.25
1741 3673 1.269703 CCCCACCCTACCACAGTACC 61.270 65.000 0.00 0.00 0.00 3.34
1742 3674 1.269703 CCCCCACCCTACCACAGTAC 61.270 65.000 0.00 0.00 0.00 2.73
1743 3675 1.081462 CCCCCACCCTACCACAGTA 59.919 63.158 0.00 0.00 0.00 2.74
1744 3676 2.204090 CCCCCACCCTACCACAGT 60.204 66.667 0.00 0.00 0.00 3.55
1972 3910 4.337555 AGCTCACCAAATCATGATAACTGC 59.662 41.667 9.04 7.56 0.00 4.40
2014 3952 7.337938 GGAACATAATTGTTTTCCAATCCCAT 58.662 34.615 13.52 0.00 46.01 4.00
2114 4061 2.572664 CGCGAAACGGCAACTTTTT 58.427 47.368 0.00 0.00 38.29 1.94
2129 4076 5.911838 CAGATATGATGATACAGATACCGCG 59.088 44.000 0.00 0.00 0.00 6.46
2221 4174 8.349983 TCTGCAAGGAATAAGTAAACAGAAAAC 58.650 33.333 0.00 0.00 0.00 2.43
2263 4216 5.713025 AGATGGACATGTGTAAACAATTGC 58.287 37.500 1.15 0.00 0.00 3.56
2302 4255 6.097554 CCAGCCTCTACTTCTTTCTATTCTCA 59.902 42.308 0.00 0.00 0.00 3.27
2377 4330 4.528987 AGAGAGAGTGAAGAAACCTAACCC 59.471 45.833 0.00 0.00 0.00 4.11
2588 4541 9.120538 GCATAAAGGGAAAAGTAACTATCATGA 57.879 33.333 0.00 0.00 0.00 3.07
2640 4609 3.818773 ACCAAACTTAAGCGTGCTACAAT 59.181 39.130 1.29 0.00 0.00 2.71
2669 4638 5.273208 CCACATATAGGGAGTAGTAGGCAT 58.727 45.833 0.00 0.00 0.00 4.40
2670 4639 4.673968 CCACATATAGGGAGTAGTAGGCA 58.326 47.826 0.00 0.00 0.00 4.75
2672 4641 4.673968 TGCCACATATAGGGAGTAGTAGG 58.326 47.826 0.00 0.00 0.00 3.18
2703 4672 2.421424 GTCCAAGGCTGCACTATTTCAG 59.579 50.000 0.50 0.00 0.00 3.02
2760 4729 7.674471 TTCGTGGTGTAAATCATTTGATACA 57.326 32.000 0.00 0.00 33.73 2.29
2894 4863 1.528129 TTGTTATCATGTGCCGTGCA 58.472 45.000 0.00 0.00 35.60 4.57
2970 4939 6.876257 CCTATACCCTGAGCATATGAAGAAAC 59.124 42.308 6.97 0.00 0.00 2.78
2993 4962 3.744940 TTTGCCATTGAAGATCCTCCT 57.255 42.857 0.00 0.00 0.00 3.69
2994 4963 4.019174 TCTTTTGCCATTGAAGATCCTCC 58.981 43.478 0.00 0.00 0.00 4.30
2995 4964 5.649782 TTCTTTTGCCATTGAAGATCCTC 57.350 39.130 0.00 0.00 30.26 3.71
3026 4995 3.128589 CAGTTTGGGTGGTAATTCGGATG 59.871 47.826 0.00 0.00 0.00 3.51
3037 5006 0.104671 CAAGGTTGCAGTTTGGGTGG 59.895 55.000 0.00 0.00 0.00 4.61
3038 5007 1.110442 TCAAGGTTGCAGTTTGGGTG 58.890 50.000 6.96 0.00 0.00 4.61
3120 5090 9.095065 AGATCATGAATTTGCTTAATTTTGCTC 57.905 29.630 0.00 0.00 36.59 4.26
3141 5111 5.163343 ACCCTATTTGCTTAACGCTAGATCA 60.163 40.000 0.00 0.00 40.11 2.92
3174 5144 9.354673 TGGAAATAGCCTAATTAATCCTCTTTG 57.645 33.333 0.00 0.00 0.00 2.77
3226 5196 7.341030 TCTGAATCAGATGAATAACACCATGT 58.659 34.615 9.18 0.00 35.39 3.21
3395 5365 7.338800 AGATGTTCATTTCAGTCAGTTGTTT 57.661 32.000 0.00 0.00 0.00 2.83
3455 5425 8.863872 ACAGCTGTAAGTTTCTATTATTGGTT 57.136 30.769 20.16 0.00 35.30 3.67
3494 5464 9.975218 ATGATCATGATGGATGAAGAATGAATA 57.025 29.630 14.30 0.00 44.50 1.75
3632 5603 4.714632 ACTTTGGGATTTCTTTCAGTCGA 58.285 39.130 0.00 0.00 0.00 4.20
3843 5814 7.878127 AGTCAAGCAAAGTACTGTGTATACATT 59.122 33.333 14.60 0.00 35.97 2.71
3908 5879 2.299013 TGCACTGTAGTACCAGACCTTG 59.701 50.000 6.18 0.00 36.30 3.61
3915 5886 4.154176 TCTTTACCTGCACTGTAGTACCA 58.846 43.478 0.00 0.00 0.00 3.25
3981 5952 4.566545 TGTTAGCAACACCACATTTCTG 57.433 40.909 0.00 0.00 36.25 3.02
4003 5974 3.632145 CCTTTGTCAGGCTGTAACAGTTT 59.368 43.478 15.27 0.00 35.13 2.66
4082 6053 7.608153 TGTTTTCACTGGATAGACGATTAAGA 58.392 34.615 0.00 0.00 0.00 2.10
4134 6105 9.891828 GACATACAATCAAAAGTTCATGTTGTA 57.108 29.630 0.00 13.05 35.73 2.41
4156 6127 3.149196 GTGATGTTGGTTCACAGGACAT 58.851 45.455 0.00 0.00 42.43 3.06
4224 6195 9.443323 TGGAAATTCATATCTTTAGTTTCGACA 57.557 29.630 0.00 0.00 0.00 4.35
4370 6689 7.923414 TTCTAAATTGGGAAAGCTTAGAGAC 57.077 36.000 0.00 0.00 31.96 3.36
4531 6857 9.643693 CAAGATAATTATTAATGCCCAATGACC 57.356 33.333 0.00 0.00 0.00 4.02
4633 6980 0.253044 TGGGATGGACTACTTGCTGC 59.747 55.000 0.00 0.00 0.00 5.25
4641 6988 0.042581 TGCAGGAGTGGGATGGACTA 59.957 55.000 0.00 0.00 0.00 2.59
4765 7112 1.002134 GCCTAGCAAGACCCTGCAA 60.002 57.895 0.00 0.00 45.18 4.08
5313 7660 2.101582 TGCACAACAAACCATGGGTAAC 59.898 45.455 18.09 0.00 33.12 2.50
5327 7674 2.602878 CAGCAATGGAGAATGCACAAC 58.397 47.619 0.00 0.00 41.42 3.32
5444 7791 2.887151 AACTGGCCTTTATGCACTCT 57.113 45.000 3.32 0.00 0.00 3.24
5456 7803 4.271776 AGCGTTCGTATAATAAAACTGGCC 59.728 41.667 0.00 0.00 0.00 5.36
5473 7820 3.820777 AAATTTGCAGAGAGAGCGTTC 57.179 42.857 0.00 0.00 33.85 3.95
5513 7861 7.229907 ACAATTACACAAGTCGGAACCTAAAAT 59.770 33.333 0.00 0.00 0.00 1.82
5571 7919 2.068837 AAAAGAACACATGCGCCATG 57.931 45.000 4.18 11.55 46.18 3.66
5626 7976 5.245531 TCACTTCTTGTCACCATGGTTATC 58.754 41.667 16.84 9.15 0.00 1.75
5668 8018 2.490903 ACAAGATGAAGTGCAGCCAATC 59.509 45.455 0.00 0.00 31.91 2.67
5669 8019 2.522185 ACAAGATGAAGTGCAGCCAAT 58.478 42.857 0.00 0.00 31.91 3.16
5670 8020 1.985473 ACAAGATGAAGTGCAGCCAA 58.015 45.000 0.00 0.00 31.91 4.52
5671 8021 2.224499 TGTACAAGATGAAGTGCAGCCA 60.224 45.455 0.00 0.00 31.91 4.75
5672 8022 2.417933 CTGTACAAGATGAAGTGCAGCC 59.582 50.000 0.00 0.00 40.56 4.85
5673 8023 3.736530 CTGTACAAGATGAAGTGCAGC 57.263 47.619 0.00 0.00 40.56 5.25
5675 8025 4.335400 TCACTGTACAAGATGAAGTGCA 57.665 40.909 0.00 0.00 38.48 4.57
5676 8026 4.083802 GGTTCACTGTACAAGATGAAGTGC 60.084 45.833 14.14 6.14 38.48 4.40
5677 8027 5.056480 TGGTTCACTGTACAAGATGAAGTG 58.944 41.667 14.14 9.20 39.66 3.16
5678 8028 5.290493 TGGTTCACTGTACAAGATGAAGT 57.710 39.130 14.14 0.00 31.13 3.01
5679 8029 7.323420 TCTATGGTTCACTGTACAAGATGAAG 58.677 38.462 14.14 5.79 31.13 3.02
5680 8030 7.039011 ACTCTATGGTTCACTGTACAAGATGAA 60.039 37.037 11.08 11.08 0.00 2.57
5681 8031 6.437477 ACTCTATGGTTCACTGTACAAGATGA 59.563 38.462 0.00 0.00 0.00 2.92
5682 8032 6.533012 CACTCTATGGTTCACTGTACAAGATG 59.467 42.308 0.00 0.00 0.00 2.90
5683 8033 6.437477 TCACTCTATGGTTCACTGTACAAGAT 59.563 38.462 0.00 0.00 0.00 2.40
5684 8034 5.773176 TCACTCTATGGTTCACTGTACAAGA 59.227 40.000 0.00 0.00 0.00 3.02
5685 8035 6.025749 TCACTCTATGGTTCACTGTACAAG 57.974 41.667 0.00 0.00 0.00 3.16
5686 8036 6.605471 ATCACTCTATGGTTCACTGTACAA 57.395 37.500 0.00 0.00 0.00 2.41
5687 8037 6.398095 CAATCACTCTATGGTTCACTGTACA 58.602 40.000 0.00 0.00 24.58 2.90
5688 8038 5.812642 CCAATCACTCTATGGTTCACTGTAC 59.187 44.000 0.00 0.00 24.58 2.90
5689 8039 5.626809 GCCAATCACTCTATGGTTCACTGTA 60.627 44.000 0.00 0.00 36.57 2.74
5690 8040 4.836825 CCAATCACTCTATGGTTCACTGT 58.163 43.478 0.00 0.00 24.58 3.55
5691 8041 3.624861 GCCAATCACTCTATGGTTCACTG 59.375 47.826 0.00 0.00 36.57 3.66
5692 8042 3.521126 AGCCAATCACTCTATGGTTCACT 59.479 43.478 0.00 0.00 36.57 3.41
5693 8043 3.624861 CAGCCAATCACTCTATGGTTCAC 59.375 47.826 0.00 0.00 36.57 3.18
5694 8044 3.877559 CAGCCAATCACTCTATGGTTCA 58.122 45.455 0.00 0.00 36.57 3.18
5695 8045 2.615912 GCAGCCAATCACTCTATGGTTC 59.384 50.000 0.00 0.00 36.57 3.62
5696 8046 2.025981 TGCAGCCAATCACTCTATGGTT 60.026 45.455 0.00 0.00 36.57 3.67
5697 8047 1.561076 TGCAGCCAATCACTCTATGGT 59.439 47.619 0.00 0.00 36.57 3.55
5698 8048 1.945394 GTGCAGCCAATCACTCTATGG 59.055 52.381 0.00 0.00 37.29 2.74
5699 8049 2.915349 AGTGCAGCCAATCACTCTATG 58.085 47.619 0.00 0.00 39.11 2.23
5700 8050 3.054875 TGAAGTGCAGCCAATCACTCTAT 60.055 43.478 0.00 0.00 42.19 1.98
5701 8051 2.302733 TGAAGTGCAGCCAATCACTCTA 59.697 45.455 0.00 0.00 42.19 2.43
5702 8052 1.072806 TGAAGTGCAGCCAATCACTCT 59.927 47.619 0.00 0.00 42.19 3.24
5703 8053 1.527034 TGAAGTGCAGCCAATCACTC 58.473 50.000 0.00 0.00 42.19 3.51
5704 8054 2.089980 GATGAAGTGCAGCCAATCACT 58.910 47.619 0.00 0.00 44.64 3.41
5705 8055 2.089980 AGATGAAGTGCAGCCAATCAC 58.910 47.619 0.00 0.00 31.91 3.06
5706 8056 2.490509 CAAGATGAAGTGCAGCCAATCA 59.509 45.455 0.00 0.00 31.91 2.57
5707 8057 2.490903 ACAAGATGAAGTGCAGCCAATC 59.509 45.455 0.00 0.00 31.91 2.67
5731 8081 7.967890 TTATATACACACTAAGTCGATCGGA 57.032 36.000 16.41 0.00 0.00 4.55
5751 8104 5.045215 CCGTCTGGCGTCAAGTATTTTATA 58.955 41.667 0.00 0.00 39.32 0.98
5772 8125 0.038526 ACGTGGCTTCTTCTGTACCG 60.039 55.000 0.00 0.00 0.00 4.02
5774 8127 2.288273 ACAGACGTGGCTTCTTCTGTAC 60.288 50.000 15.87 0.00 45.41 2.90
5790 8146 5.874810 TCAGGTTATGATAACTGCAACAGAC 59.125 40.000 14.34 0.00 31.99 3.51
5822 8178 9.141400 CTGACAGTTAGTTGAGGTAATAACTTC 57.859 37.037 0.00 0.00 36.56 3.01
5835 8191 5.466728 ACTGCATAACACTGACAGTTAGTTG 59.533 40.000 17.32 10.00 38.38 3.16
5843 8199 1.202746 TGGCACTGCATAACACTGACA 60.203 47.619 2.82 0.00 28.66 3.58
5855 8211 6.451064 AAGGTAATAACTTAATGGCACTGC 57.549 37.500 0.00 0.00 0.00 4.40
5881 8237 8.007742 ACCATCTCCATCTGAGTTACTAGTATT 58.992 37.037 2.79 0.00 42.12 1.89
5937 8297 1.201987 ACGTTTTTGTGCGTGAGTGTC 60.202 47.619 0.00 0.00 40.03 3.67
5939 8299 1.452717 GACGTTTTTGTGCGTGAGTG 58.547 50.000 0.00 0.00 41.70 3.51
5943 8303 1.833860 ATTGGACGTTTTTGTGCGTG 58.166 45.000 0.00 0.00 41.70 5.34
5945 8305 3.168193 GGATATTGGACGTTTTTGTGCG 58.832 45.455 0.00 0.00 32.14 5.34
5949 8309 3.130340 CCCAGGGATATTGGACGTTTTTG 59.870 47.826 0.00 0.00 37.96 2.44
5950 8310 3.361786 CCCAGGGATATTGGACGTTTTT 58.638 45.455 0.00 0.00 37.96 1.94
5988 8348 3.923017 AGCTGCAAATAACTTCACCAC 57.077 42.857 1.02 0.00 0.00 4.16
6009 8369 9.673454 GGAAACGTTAGTTAAGATTTTGTCATT 57.327 29.630 0.00 0.00 40.18 2.57
6029 8391 0.991344 GCCGCATCAATTTGGAAACG 59.009 50.000 0.00 0.00 0.00 3.60
6033 8395 0.531657 CCAAGCCGCATCAATTTGGA 59.468 50.000 1.46 0.00 40.52 3.53
6039 8401 2.121291 TATGAACCAAGCCGCATCAA 57.879 45.000 0.00 0.00 0.00 2.57
6055 8417 7.544566 AGAAACGTGTATCTGTAGTTGGTTATG 59.455 37.037 0.00 0.00 0.00 1.90
6063 8425 9.408069 CTAAAGAAAGAAACGTGTATCTGTAGT 57.592 33.333 0.00 0.00 0.00 2.73
6090 8452 5.289083 ACAAAAAGCAAATGTGGTACCAT 57.711 34.783 19.72 0.00 34.25 3.55
6096 8458 6.222389 TCAGGATAACAAAAAGCAAATGTGG 58.778 36.000 0.00 0.00 0.00 4.17
6386 8748 5.880901 AGTGAAACATCCAGACCTATTGTT 58.119 37.500 0.00 0.00 41.43 2.83
6422 8786 7.686615 GCATGTTTGGCCAATAACCTACAATAT 60.687 37.037 21.26 1.48 0.00 1.28
6427 8791 3.194542 TGCATGTTTGGCCAATAACCTAC 59.805 43.478 21.26 13.92 0.00 3.18
6437 8801 3.010413 GCCTCCTGCATGTTTGGCC 62.010 63.158 0.00 0.00 40.77 5.36
6440 8804 0.674581 TCTCGCCTCCTGCATGTTTG 60.675 55.000 0.00 0.00 41.33 2.93
6441 8805 0.674895 GTCTCGCCTCCTGCATGTTT 60.675 55.000 0.00 0.00 41.33 2.83
6462 8826 4.024670 ACAAGGGTCCTCTATGTAGTCAC 58.975 47.826 0.00 0.00 0.00 3.67
6467 8831 2.827755 TGCACAAGGGTCCTCTATGTA 58.172 47.619 0.00 0.00 0.00 2.29
6468 8832 1.656587 TGCACAAGGGTCCTCTATGT 58.343 50.000 0.00 0.00 0.00 2.29
6469 8833 2.749621 GTTTGCACAAGGGTCCTCTATG 59.250 50.000 0.00 0.00 0.00 2.23
6475 8839 1.000843 GGAATGTTTGCACAAGGGTCC 59.999 52.381 0.00 0.00 36.16 4.46
6527 8891 4.237349 ACCAAAACAAACATGATCGACC 57.763 40.909 0.00 0.00 0.00 4.79
6554 8919 1.471287 GATCATGTCAGCAGCAAAGCA 59.529 47.619 0.00 0.00 36.85 3.91
6556 8921 2.478031 GCAGATCATGTCAGCAGCAAAG 60.478 50.000 0.00 0.00 39.03 2.77
6582 8947 1.068055 CAAAGCATGTGCCCAGAACTC 60.068 52.381 0.57 0.00 43.38 3.01
6655 9020 2.910199 TGCACTGATCATCACTAAGGC 58.090 47.619 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.