Multiple sequence alignment - TraesCS2A01G338300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G338300 chr2A 100.000 3280 0 0 1 3280 572617126 572613847 0.000000e+00 6058.0
1 TraesCS2A01G338300 chr2D 93.784 2590 88 34 389 2946 417543197 417545745 0.000000e+00 3823.0
2 TraesCS2A01G338300 chr2D 88.372 344 14 5 2943 3280 417545789 417546112 1.100000e-104 390.0
3 TraesCS2A01G338300 chr2D 94.000 50 2 1 374 422 471507728 471507679 1.260000e-09 75.0
4 TraesCS2A01G338300 chr2B 91.663 2291 80 39 698 2946 489418451 489420672 0.000000e+00 3070.0
5 TraesCS2A01G338300 chr2B 89.967 299 19 4 411 705 489386620 489386911 3.090000e-100 375.0
6 TraesCS2A01G338300 chr2B 86.239 327 43 2 1 326 489364261 489364586 1.450000e-93 353.0
7 TraesCS2A01G338300 chr2B 96.026 151 6 0 2943 3093 489420716 489420866 2.530000e-61 246.0
8 TraesCS2A01G338300 chr2B 79.848 263 34 9 1294 1540 83955107 83954848 1.210000e-39 174.0
9 TraesCS2A01G338300 chr2B 95.413 109 3 2 3093 3199 489420940 489421048 4.350000e-39 172.0
10 TraesCS2A01G338300 chr4A 84.274 248 36 2 1288 1532 173630690 173630937 4.230000e-59 239.0
11 TraesCS2A01G338300 chr4A 93.617 47 3 0 375 421 739739760 739739714 1.630000e-08 71.3
12 TraesCS2A01G338300 chr4D 83.871 248 37 2 1288 1532 305141322 305141569 1.970000e-57 233.0
13 TraesCS2A01G338300 chr4B 83.806 247 37 2 1288 1531 381374103 381374349 7.080000e-57 231.0
14 TraesCS2A01G338300 chr4B 88.710 62 4 3 357 416 491838560 491838500 4.540000e-09 73.1
15 TraesCS2A01G338300 chr7A 81.614 223 35 5 1300 1516 489163234 489163456 2.600000e-41 180.0
16 TraesCS2A01G338300 chr7D 80.973 226 37 5 1297 1516 438368646 438368871 1.210000e-39 174.0
17 TraesCS2A01G338300 chr7D 85.714 70 10 0 1036 1105 215096454 215096385 1.260000e-09 75.0
18 TraesCS2A01G338300 chr7B 80.617 227 36 7 1300 1519 455272022 455271797 5.630000e-38 169.0
19 TraesCS2A01G338300 chr5D 81.333 150 22 3 1036 1182 384348078 384347932 2.070000e-22 117.0
20 TraesCS2A01G338300 chr5D 90.476 63 5 1 1035 1096 519277281 519277343 7.540000e-12 82.4
21 TraesCS2A01G338300 chr5B 80.667 150 23 3 1036 1182 461141441 461141295 9.620000e-21 111.0
22 TraesCS2A01G338300 chr5B 90.566 53 4 1 368 419 308991593 308991645 5.870000e-08 69.4
23 TraesCS2A01G338300 chr3D 78.082 146 24 5 1035 1176 445038185 445038044 5.830000e-13 86.1
24 TraesCS2A01G338300 chr3B 77.397 146 25 5 1035 1176 583392857 583392716 2.710000e-11 80.5
25 TraesCS2A01G338300 chr3B 90.909 55 5 0 1038 1092 22505935 22505881 1.260000e-09 75.0
26 TraesCS2A01G338300 chr3A 89.655 58 5 1 368 424 689133778 689133721 4.540000e-09 73.1
27 TraesCS2A01G338300 chr6D 91.837 49 3 1 375 423 450361103 450361150 2.110000e-07 67.6
28 TraesCS2A01G338300 chr6D 88.889 54 4 2 368 419 53672090 53672143 7.600000e-07 65.8
29 TraesCS2A01G338300 chr1B 83.333 72 7 5 368 435 322957251 322957181 9.830000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G338300 chr2A 572613847 572617126 3279 True 6058.000000 6058 100.000000 1 3280 1 chr2A.!!$R1 3279
1 TraesCS2A01G338300 chr2D 417543197 417546112 2915 False 2106.500000 3823 91.078000 389 3280 2 chr2D.!!$F1 2891
2 TraesCS2A01G338300 chr2B 489418451 489421048 2597 False 1162.666667 3070 94.367333 698 3199 3 chr2B.!!$F3 2501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.029567 CGCTTAGGTCAGCCGACTAG 59.970 60.0 0.0 0.0 42.21 2.57 F
589 599 0.181350 CTCCACTTGGCCCATAGTCC 59.819 60.0 0.0 0.0 34.44 3.85 F
590 600 0.253160 TCCACTTGGCCCATAGTCCT 60.253 55.0 0.0 0.0 34.44 3.85 F
1734 1786 0.877743 GGTGTTCAAGAAGAGCCTGC 59.122 55.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1744 1.069765 ACAGCACCCACTCGTTCTG 59.930 57.895 0.0 0.0 33.79 3.02 R
1795 1847 1.076350 AGGACCCTATCTCCTCCATCG 59.924 57.143 0.0 0.0 32.06 3.84 R
1997 2049 1.546589 TTGCCAACGGGGAGTACGAT 61.547 55.000 0.0 0.0 40.01 3.73 R
3026 3129 0.461961 ATGCTCGACTAAGGAGGTGC 59.538 55.000 0.0 0.0 32.10 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.659610 GCTGGAGCTCCGTTGACT 59.340 61.111 27.43 0.00 39.43 3.41
18 19 1.890894 GCTGGAGCTCCGTTGACTA 59.109 57.895 27.43 7.41 39.43 2.59
19 20 0.458716 GCTGGAGCTCCGTTGACTAC 60.459 60.000 27.43 6.81 39.43 2.73
27 28 3.750162 CGTTGACTACGTCCAGCG 58.250 61.111 0.00 0.00 45.14 5.18
28 29 1.800315 CGTTGACTACGTCCAGCGG 60.800 63.158 11.75 0.00 45.14 5.52
29 30 1.445582 GTTGACTACGTCCAGCGGG 60.446 63.158 0.00 0.00 46.52 6.13
30 31 1.604308 TTGACTACGTCCAGCGGGA 60.604 57.895 0.00 0.00 46.52 5.14
38 39 2.970639 TCCAGCGGGAAGAACTCG 59.029 61.111 1.89 0.00 46.38 4.18
39 40 1.605451 TCCAGCGGGAAGAACTCGA 60.605 57.895 1.89 0.00 46.62 4.04
40 41 1.153745 CCAGCGGGAAGAACTCGAG 60.154 63.158 11.84 11.84 46.62 4.04
41 42 1.153745 CAGCGGGAAGAACTCGAGG 60.154 63.158 18.41 0.00 46.62 4.63
42 43 2.184579 GCGGGAAGAACTCGAGGG 59.815 66.667 18.41 0.00 46.62 4.30
43 44 2.893398 CGGGAAGAACTCGAGGGG 59.107 66.667 18.41 0.00 46.62 4.79
44 45 2.722201 CGGGAAGAACTCGAGGGGG 61.722 68.421 18.41 0.00 46.62 5.40
61 62 2.263852 GGTCGAACCCCGGAAGAC 59.736 66.667 0.73 4.57 39.14 3.01
62 63 2.576832 GGTCGAACCCCGGAAGACA 61.577 63.158 0.73 0.00 39.14 3.41
63 64 1.368579 GTCGAACCCCGGAAGACAA 59.631 57.895 0.73 0.00 39.14 3.18
64 65 0.249996 GTCGAACCCCGGAAGACAAA 60.250 55.000 0.73 0.00 39.14 2.83
65 66 0.688487 TCGAACCCCGGAAGACAAAT 59.312 50.000 0.73 0.00 39.14 2.32
66 67 1.072648 TCGAACCCCGGAAGACAAATT 59.927 47.619 0.73 0.00 39.14 1.82
67 68 1.467342 CGAACCCCGGAAGACAAATTC 59.533 52.381 0.73 0.00 33.91 2.17
68 69 1.467342 GAACCCCGGAAGACAAATTCG 59.533 52.381 0.73 0.00 0.00 3.34
69 70 0.688487 ACCCCGGAAGACAAATTCGA 59.312 50.000 0.73 0.00 0.00 3.71
70 71 1.072648 ACCCCGGAAGACAAATTCGAA 59.927 47.619 0.73 0.00 0.00 3.71
71 72 1.737793 CCCCGGAAGACAAATTCGAAG 59.262 52.381 0.73 0.00 0.00 3.79
72 73 2.614481 CCCCGGAAGACAAATTCGAAGA 60.614 50.000 0.73 0.00 0.00 2.87
73 74 3.071479 CCCGGAAGACAAATTCGAAGAA 58.929 45.455 0.73 0.00 45.90 2.52
74 75 3.125316 CCCGGAAGACAAATTCGAAGAAG 59.875 47.826 0.73 0.00 45.90 2.85
75 76 3.994392 CCGGAAGACAAATTCGAAGAAGA 59.006 43.478 3.35 0.00 45.90 2.87
76 77 4.451096 CCGGAAGACAAATTCGAAGAAGAA 59.549 41.667 3.35 0.00 45.90 2.52
77 78 5.389935 CCGGAAGACAAATTCGAAGAAGAAG 60.390 44.000 3.35 0.00 45.90 2.85
78 79 5.386447 GGAAGACAAATTCGAAGAAGAAGC 58.614 41.667 3.35 0.00 45.90 3.86
79 80 5.049405 GGAAGACAAATTCGAAGAAGAAGCA 60.049 40.000 3.35 0.00 45.90 3.91
80 81 5.349824 AGACAAATTCGAAGAAGAAGCAC 57.650 39.130 3.35 0.00 45.90 4.40
81 82 4.214332 AGACAAATTCGAAGAAGAAGCACC 59.786 41.667 3.35 0.00 45.90 5.01
82 83 4.137543 ACAAATTCGAAGAAGAAGCACCT 58.862 39.130 3.35 0.00 45.90 4.00
83 84 4.214332 ACAAATTCGAAGAAGAAGCACCTC 59.786 41.667 3.35 0.00 45.90 3.85
84 85 2.457366 TTCGAAGAAGAAGCACCTCC 57.543 50.000 0.00 0.00 45.90 4.30
85 86 1.338107 TCGAAGAAGAAGCACCTCCA 58.662 50.000 0.00 0.00 0.00 3.86
86 87 1.902508 TCGAAGAAGAAGCACCTCCAT 59.097 47.619 0.00 0.00 0.00 3.41
87 88 2.093973 TCGAAGAAGAAGCACCTCCATC 60.094 50.000 0.00 0.00 0.00 3.51
88 89 2.093764 CGAAGAAGAAGCACCTCCATCT 60.094 50.000 0.00 0.00 0.00 2.90
89 90 3.269178 GAAGAAGAAGCACCTCCATCTG 58.731 50.000 0.00 0.00 0.00 2.90
90 91 2.264455 AGAAGAAGCACCTCCATCTGT 58.736 47.619 0.00 0.00 0.00 3.41
91 92 2.235898 AGAAGAAGCACCTCCATCTGTC 59.764 50.000 0.00 0.00 0.00 3.51
92 93 0.908198 AGAAGCACCTCCATCTGTCC 59.092 55.000 0.00 0.00 0.00 4.02
93 94 0.615331 GAAGCACCTCCATCTGTCCA 59.385 55.000 0.00 0.00 0.00 4.02
94 95 1.003580 GAAGCACCTCCATCTGTCCAA 59.996 52.381 0.00 0.00 0.00 3.53
95 96 1.293062 AGCACCTCCATCTGTCCAAT 58.707 50.000 0.00 0.00 0.00 3.16
96 97 1.211457 AGCACCTCCATCTGTCCAATC 59.789 52.381 0.00 0.00 0.00 2.67
97 98 1.945387 CACCTCCATCTGTCCAATCG 58.055 55.000 0.00 0.00 0.00 3.34
98 99 1.208052 CACCTCCATCTGTCCAATCGT 59.792 52.381 0.00 0.00 0.00 3.73
99 100 1.482593 ACCTCCATCTGTCCAATCGTC 59.517 52.381 0.00 0.00 0.00 4.20
100 101 1.536922 CCTCCATCTGTCCAATCGTCG 60.537 57.143 0.00 0.00 0.00 5.12
101 102 0.179111 TCCATCTGTCCAATCGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
102 103 0.460109 CCATCTGTCCAATCGTCGCA 60.460 55.000 0.00 0.00 0.00 5.10
103 104 0.647410 CATCTGTCCAATCGTCGCAC 59.353 55.000 0.00 0.00 0.00 5.34
104 105 0.460284 ATCTGTCCAATCGTCGCACC 60.460 55.000 0.00 0.00 0.00 5.01
105 106 1.374125 CTGTCCAATCGTCGCACCA 60.374 57.895 0.00 0.00 0.00 4.17
106 107 1.354337 CTGTCCAATCGTCGCACCAG 61.354 60.000 0.00 0.00 0.00 4.00
107 108 2.434185 TCCAATCGTCGCACCAGC 60.434 61.111 0.00 0.00 37.42 4.85
108 109 2.741985 CCAATCGTCGCACCAGCA 60.742 61.111 0.00 0.00 42.27 4.41
109 110 2.324330 CCAATCGTCGCACCAGCAA 61.324 57.895 0.00 0.00 42.27 3.91
110 111 1.133253 CAATCGTCGCACCAGCAAG 59.867 57.895 0.00 0.00 42.27 4.01
111 112 2.034879 AATCGTCGCACCAGCAAGG 61.035 57.895 0.00 0.00 42.27 3.61
112 113 2.449031 AATCGTCGCACCAGCAAGGA 62.449 55.000 1.83 0.00 42.27 3.36
113 114 3.414700 CGTCGCACCAGCAAGGAC 61.415 66.667 1.83 0.00 42.27 3.85
114 115 2.031163 GTCGCACCAGCAAGGACT 59.969 61.111 1.83 0.00 42.27 3.85
115 116 1.292223 GTCGCACCAGCAAGGACTA 59.708 57.895 1.83 0.00 42.27 2.59
116 117 0.320421 GTCGCACCAGCAAGGACTAA 60.320 55.000 1.83 0.00 42.27 2.24
117 118 0.394938 TCGCACCAGCAAGGACTAAA 59.605 50.000 1.83 0.00 42.27 1.85
118 119 1.202710 TCGCACCAGCAAGGACTAAAA 60.203 47.619 1.83 0.00 42.27 1.52
119 120 1.606668 CGCACCAGCAAGGACTAAAAA 59.393 47.619 1.83 0.00 42.27 1.94
120 121 2.228822 CGCACCAGCAAGGACTAAAAAT 59.771 45.455 1.83 0.00 42.27 1.82
121 122 3.670627 CGCACCAGCAAGGACTAAAAATC 60.671 47.826 1.83 0.00 42.27 2.17
122 123 3.367395 GCACCAGCAAGGACTAAAAATCC 60.367 47.826 1.83 0.00 41.22 3.01
124 125 5.253330 CACCAGCAAGGACTAAAAATCCTA 58.747 41.667 1.83 0.00 46.36 2.94
125 126 5.710099 CACCAGCAAGGACTAAAAATCCTAA 59.290 40.000 1.83 0.00 46.36 2.69
126 127 5.710567 ACCAGCAAGGACTAAAAATCCTAAC 59.289 40.000 1.83 0.00 46.36 2.34
127 128 5.125578 CCAGCAAGGACTAAAAATCCTAACC 59.874 44.000 0.00 0.00 46.36 2.85
128 129 5.946377 CAGCAAGGACTAAAAATCCTAACCT 59.054 40.000 0.00 0.00 46.36 3.50
129 130 7.110155 CAGCAAGGACTAAAAATCCTAACCTA 58.890 38.462 0.00 0.00 46.36 3.08
130 131 7.610305 CAGCAAGGACTAAAAATCCTAACCTAA 59.390 37.037 0.00 0.00 46.36 2.69
131 132 8.168058 AGCAAGGACTAAAAATCCTAACCTAAA 58.832 33.333 0.00 0.00 46.36 1.85
132 133 8.967918 GCAAGGACTAAAAATCCTAACCTAAAT 58.032 33.333 0.00 0.00 46.36 1.40
144 145 9.828039 AATCCTAACCTAAATTACTAACCGAAG 57.172 33.333 0.00 0.00 0.00 3.79
145 146 7.267857 TCCTAACCTAAATTACTAACCGAAGC 58.732 38.462 0.00 0.00 0.00 3.86
146 147 6.199719 CCTAACCTAAATTACTAACCGAAGCG 59.800 42.308 0.00 0.00 0.00 4.68
147 148 5.329035 ACCTAAATTACTAACCGAAGCGA 57.671 39.130 0.00 0.00 0.00 4.93
148 149 5.723295 ACCTAAATTACTAACCGAAGCGAA 58.277 37.500 0.00 0.00 0.00 4.70
149 150 5.809051 ACCTAAATTACTAACCGAAGCGAAG 59.191 40.000 0.00 0.00 0.00 3.79
150 151 6.038356 CCTAAATTACTAACCGAAGCGAAGA 58.962 40.000 0.00 0.00 0.00 2.87
151 152 5.774878 AAATTACTAACCGAAGCGAAGAC 57.225 39.130 0.00 0.00 0.00 3.01
152 153 3.921119 TTACTAACCGAAGCGAAGACA 57.079 42.857 0.00 0.00 0.00 3.41
153 154 2.061740 ACTAACCGAAGCGAAGACAC 57.938 50.000 0.00 0.00 0.00 3.67
154 155 1.336609 ACTAACCGAAGCGAAGACACC 60.337 52.381 0.00 0.00 0.00 4.16
155 156 0.675083 TAACCGAAGCGAAGACACCA 59.325 50.000 0.00 0.00 0.00 4.17
156 157 0.600255 AACCGAAGCGAAGACACCAG 60.600 55.000 0.00 0.00 0.00 4.00
157 158 1.289066 CCGAAGCGAAGACACCAGA 59.711 57.895 0.00 0.00 0.00 3.86
158 159 0.108615 CCGAAGCGAAGACACCAGAT 60.109 55.000 0.00 0.00 0.00 2.90
159 160 1.673033 CCGAAGCGAAGACACCAGATT 60.673 52.381 0.00 0.00 0.00 2.40
160 161 2.069273 CGAAGCGAAGACACCAGATTT 58.931 47.619 0.00 0.00 0.00 2.17
161 162 2.092838 CGAAGCGAAGACACCAGATTTC 59.907 50.000 0.00 0.00 0.00 2.17
162 163 2.100605 AGCGAAGACACCAGATTTCC 57.899 50.000 0.00 0.00 0.00 3.13
163 164 1.087501 GCGAAGACACCAGATTTCCC 58.912 55.000 0.00 0.00 0.00 3.97
164 165 1.339151 GCGAAGACACCAGATTTCCCT 60.339 52.381 0.00 0.00 0.00 4.20
165 166 2.876079 GCGAAGACACCAGATTTCCCTT 60.876 50.000 0.00 0.00 0.00 3.95
166 167 3.003480 CGAAGACACCAGATTTCCCTTC 58.997 50.000 0.00 0.00 0.00 3.46
167 168 3.348119 GAAGACACCAGATTTCCCTTCC 58.652 50.000 0.00 0.00 0.00 3.46
168 169 1.636003 AGACACCAGATTTCCCTTCCC 59.364 52.381 0.00 0.00 0.00 3.97
169 170 1.636003 GACACCAGATTTCCCTTCCCT 59.364 52.381 0.00 0.00 0.00 4.20
170 171 1.636003 ACACCAGATTTCCCTTCCCTC 59.364 52.381 0.00 0.00 0.00 4.30
171 172 1.064389 CACCAGATTTCCCTTCCCTCC 60.064 57.143 0.00 0.00 0.00 4.30
172 173 1.298953 CCAGATTTCCCTTCCCTCCA 58.701 55.000 0.00 0.00 0.00 3.86
173 174 1.064389 CCAGATTTCCCTTCCCTCCAC 60.064 57.143 0.00 0.00 0.00 4.02
174 175 1.064389 CAGATTTCCCTTCCCTCCACC 60.064 57.143 0.00 0.00 0.00 4.61
175 176 0.107165 GATTTCCCTTCCCTCCACCG 60.107 60.000 0.00 0.00 0.00 4.94
176 177 1.571773 ATTTCCCTTCCCTCCACCGG 61.572 60.000 0.00 0.00 0.00 5.28
177 178 2.699607 TTTCCCTTCCCTCCACCGGA 62.700 60.000 9.46 0.00 0.00 5.14
178 179 3.400054 CCCTTCCCTCCACCGGAC 61.400 72.222 9.46 0.00 0.00 4.79
179 180 2.606519 CCTTCCCTCCACCGGACA 60.607 66.667 9.46 0.00 0.00 4.02
180 181 1.995626 CCTTCCCTCCACCGGACAT 60.996 63.158 9.46 0.00 0.00 3.06
181 182 1.522569 CTTCCCTCCACCGGACATC 59.477 63.158 9.46 0.00 0.00 3.06
182 183 1.229368 TTCCCTCCACCGGACATCA 60.229 57.895 9.46 0.00 0.00 3.07
183 184 1.264749 TTCCCTCCACCGGACATCAG 61.265 60.000 9.46 0.00 0.00 2.90
184 185 1.685765 CCCTCCACCGGACATCAGA 60.686 63.158 9.46 0.00 0.00 3.27
185 186 1.680522 CCCTCCACCGGACATCAGAG 61.681 65.000 9.46 4.33 0.00 3.35
186 187 0.972983 CCTCCACCGGACATCAGAGT 60.973 60.000 9.46 0.00 0.00 3.24
187 188 0.898320 CTCCACCGGACATCAGAGTT 59.102 55.000 9.46 0.00 0.00 3.01
188 189 0.608130 TCCACCGGACATCAGAGTTG 59.392 55.000 9.46 0.00 0.00 3.16
189 190 0.321671 CCACCGGACATCAGAGTTGT 59.678 55.000 9.46 0.00 0.00 3.32
190 191 1.548719 CCACCGGACATCAGAGTTGTA 59.451 52.381 9.46 0.00 0.00 2.41
191 192 2.417379 CCACCGGACATCAGAGTTGTAG 60.417 54.545 9.46 0.00 0.00 2.74
192 193 2.492088 CACCGGACATCAGAGTTGTAGA 59.508 50.000 9.46 0.00 0.00 2.59
193 194 2.492484 ACCGGACATCAGAGTTGTAGAC 59.508 50.000 9.46 0.00 0.00 2.59
194 195 2.492088 CCGGACATCAGAGTTGTAGACA 59.508 50.000 0.00 0.00 0.00 3.41
195 196 3.428180 CCGGACATCAGAGTTGTAGACAG 60.428 52.174 0.00 0.00 0.00 3.51
196 197 3.440522 CGGACATCAGAGTTGTAGACAGA 59.559 47.826 0.00 0.00 0.00 3.41
197 198 4.438065 CGGACATCAGAGTTGTAGACAGAG 60.438 50.000 0.00 0.00 0.00 3.35
198 199 4.142271 GGACATCAGAGTTGTAGACAGAGG 60.142 50.000 0.00 0.00 0.00 3.69
199 200 3.766591 ACATCAGAGTTGTAGACAGAGGG 59.233 47.826 0.00 0.00 0.00 4.30
200 201 2.808919 TCAGAGTTGTAGACAGAGGGG 58.191 52.381 0.00 0.00 0.00 4.79
201 202 2.378886 TCAGAGTTGTAGACAGAGGGGA 59.621 50.000 0.00 0.00 0.00 4.81
202 203 2.757868 CAGAGTTGTAGACAGAGGGGAG 59.242 54.545 0.00 0.00 0.00 4.30
203 204 2.650322 AGAGTTGTAGACAGAGGGGAGA 59.350 50.000 0.00 0.00 0.00 3.71
204 205 2.756207 GAGTTGTAGACAGAGGGGAGAC 59.244 54.545 0.00 0.00 0.00 3.36
205 206 2.380590 AGTTGTAGACAGAGGGGAGACT 59.619 50.000 0.00 0.00 0.00 3.24
206 207 3.592427 AGTTGTAGACAGAGGGGAGACTA 59.408 47.826 0.00 0.00 0.00 2.59
207 208 4.044317 AGTTGTAGACAGAGGGGAGACTAA 59.956 45.833 0.00 0.00 0.00 2.24
208 209 4.883021 TGTAGACAGAGGGGAGACTAAT 57.117 45.455 0.00 0.00 0.00 1.73
209 210 4.794334 TGTAGACAGAGGGGAGACTAATC 58.206 47.826 0.00 0.00 0.00 1.75
210 211 3.322191 AGACAGAGGGGAGACTAATCC 57.678 52.381 0.00 0.00 38.76 3.01
211 212 2.587777 AGACAGAGGGGAGACTAATCCA 59.412 50.000 0.00 0.00 41.52 3.41
212 213 3.208692 AGACAGAGGGGAGACTAATCCAT 59.791 47.826 0.00 0.00 41.52 3.41
213 214 3.312890 ACAGAGGGGAGACTAATCCATG 58.687 50.000 0.00 0.00 41.52 3.66
214 215 2.636893 CAGAGGGGAGACTAATCCATGG 59.363 54.545 4.97 4.97 41.52 3.66
215 216 1.981495 GAGGGGAGACTAATCCATGGG 59.019 57.143 13.02 0.00 41.52 4.00
216 217 1.298382 AGGGGAGACTAATCCATGGGT 59.702 52.381 13.02 0.00 41.52 4.51
217 218 2.136026 GGGGAGACTAATCCATGGGTT 58.864 52.381 16.13 16.13 41.52 4.11
218 219 2.106684 GGGGAGACTAATCCATGGGTTC 59.893 54.545 15.19 0.00 41.52 3.62
219 220 2.224305 GGGAGACTAATCCATGGGTTCG 60.224 54.545 15.19 11.01 41.52 3.95
220 221 2.434702 GGAGACTAATCCATGGGTTCGT 59.565 50.000 15.19 14.77 39.34 3.85
221 222 3.492829 GGAGACTAATCCATGGGTTCGTC 60.493 52.174 27.18 27.18 39.34 4.20
222 223 2.100916 AGACTAATCCATGGGTTCGTCG 59.899 50.000 27.64 13.42 0.00 5.12
223 224 1.138266 ACTAATCCATGGGTTCGTCGG 59.862 52.381 15.19 3.50 0.00 4.79
224 225 1.138266 CTAATCCATGGGTTCGTCGGT 59.862 52.381 15.19 0.00 0.00 4.69
225 226 0.392461 AATCCATGGGTTCGTCGGTG 60.392 55.000 13.02 0.00 0.00 4.94
226 227 1.261938 ATCCATGGGTTCGTCGGTGA 61.262 55.000 13.02 0.00 0.00 4.02
227 228 1.004320 CCATGGGTTCGTCGGTGAA 60.004 57.895 2.85 0.00 0.00 3.18
228 229 1.019278 CCATGGGTTCGTCGGTGAAG 61.019 60.000 2.85 0.00 0.00 3.02
229 230 0.320421 CATGGGTTCGTCGGTGAAGT 60.320 55.000 0.00 0.00 0.00 3.01
230 231 0.037605 ATGGGTTCGTCGGTGAAGTC 60.038 55.000 0.00 0.00 0.00 3.01
231 232 1.111116 TGGGTTCGTCGGTGAAGTCT 61.111 55.000 0.00 0.00 0.00 3.24
232 233 0.666577 GGGTTCGTCGGTGAAGTCTG 60.667 60.000 0.00 0.00 0.00 3.51
233 234 0.313043 GGTTCGTCGGTGAAGTCTGA 59.687 55.000 0.00 0.00 0.00 3.27
234 235 1.269413 GGTTCGTCGGTGAAGTCTGAA 60.269 52.381 0.00 0.00 0.00 3.02
235 236 2.466846 GTTCGTCGGTGAAGTCTGAAA 58.533 47.619 0.00 0.00 0.00 2.69
236 237 2.417339 TCGTCGGTGAAGTCTGAAAG 57.583 50.000 0.00 0.00 0.00 2.62
237 238 1.000607 TCGTCGGTGAAGTCTGAAAGG 60.001 52.381 0.00 0.00 0.00 3.11
238 239 1.000607 CGTCGGTGAAGTCTGAAAGGA 60.001 52.381 0.00 0.00 0.00 3.36
239 240 2.678324 GTCGGTGAAGTCTGAAAGGAG 58.322 52.381 0.00 0.00 0.00 3.69
240 241 2.296471 GTCGGTGAAGTCTGAAAGGAGA 59.704 50.000 0.00 0.00 0.00 3.71
241 242 2.963101 TCGGTGAAGTCTGAAAGGAGAA 59.037 45.455 0.00 0.00 0.00 2.87
242 243 3.005897 TCGGTGAAGTCTGAAAGGAGAAG 59.994 47.826 0.00 0.00 0.00 2.85
243 244 3.243907 CGGTGAAGTCTGAAAGGAGAAGT 60.244 47.826 0.00 0.00 0.00 3.01
244 245 4.709250 GGTGAAGTCTGAAAGGAGAAGTT 58.291 43.478 0.00 0.00 0.00 2.66
245 246 5.126779 GGTGAAGTCTGAAAGGAGAAGTTT 58.873 41.667 0.00 0.00 0.00 2.66
246 247 5.008118 GGTGAAGTCTGAAAGGAGAAGTTTG 59.992 44.000 0.00 0.00 0.00 2.93
247 248 4.576463 TGAAGTCTGAAAGGAGAAGTTTGC 59.424 41.667 0.00 0.00 0.00 3.68
248 249 3.481453 AGTCTGAAAGGAGAAGTTTGCC 58.519 45.455 0.00 0.00 0.00 4.52
249 250 2.554462 GTCTGAAAGGAGAAGTTTGCCC 59.446 50.000 0.00 0.00 0.00 5.36
250 251 2.443255 TCTGAAAGGAGAAGTTTGCCCT 59.557 45.455 0.00 0.00 0.00 5.19
251 252 3.650942 TCTGAAAGGAGAAGTTTGCCCTA 59.349 43.478 0.00 0.00 0.00 3.53
252 253 4.006319 CTGAAAGGAGAAGTTTGCCCTAG 58.994 47.826 0.00 0.00 0.00 3.02
253 254 2.498644 AAGGAGAAGTTTGCCCTAGC 57.501 50.000 0.00 0.00 40.48 3.42
254 255 0.621082 AGGAGAAGTTTGCCCTAGCC 59.379 55.000 0.00 0.00 38.69 3.93
255 256 0.328258 GGAGAAGTTTGCCCTAGCCA 59.672 55.000 0.00 0.00 38.69 4.75
256 257 1.454201 GAGAAGTTTGCCCTAGCCAC 58.546 55.000 0.00 0.00 38.69 5.01
257 258 0.038310 AGAAGTTTGCCCTAGCCACC 59.962 55.000 0.00 0.00 38.69 4.61
258 259 0.038310 GAAGTTTGCCCTAGCCACCT 59.962 55.000 0.00 0.00 38.69 4.00
259 260 1.280998 GAAGTTTGCCCTAGCCACCTA 59.719 52.381 0.00 0.00 38.69 3.08
260 261 0.912486 AGTTTGCCCTAGCCACCTAG 59.088 55.000 0.00 0.00 40.64 3.02
271 272 3.411700 CACCTAGGGTTGGGGGAC 58.588 66.667 14.81 0.00 31.02 4.46
272 273 2.285144 ACCTAGGGTTGGGGGACG 60.285 66.667 14.81 0.00 27.29 4.79
273 274 2.039951 CCTAGGGTTGGGGGACGA 59.960 66.667 0.00 0.00 0.00 4.20
274 275 1.614226 CCTAGGGTTGGGGGACGAA 60.614 63.158 0.00 0.00 0.00 3.85
275 276 1.202769 CCTAGGGTTGGGGGACGAAA 61.203 60.000 0.00 0.00 0.00 3.46
276 277 0.035725 CTAGGGTTGGGGGACGAAAC 60.036 60.000 0.00 0.00 34.60 2.78
278 279 2.516909 GGTTGGGGGACGAAACCA 59.483 61.111 0.00 0.00 43.58 3.67
279 280 1.602605 GGTTGGGGGACGAAACCAG 60.603 63.158 0.00 0.00 43.58 4.00
280 281 1.452801 GTTGGGGGACGAAACCAGA 59.547 57.895 0.00 0.00 35.37 3.86
281 282 0.605589 GTTGGGGGACGAAACCAGAG 60.606 60.000 0.00 0.00 35.37 3.35
282 283 1.774894 TTGGGGGACGAAACCAGAGG 61.775 60.000 0.00 0.00 35.37 3.69
283 284 1.916777 GGGGGACGAAACCAGAGGA 60.917 63.158 0.00 0.00 0.00 3.71
284 285 1.486145 GGGGGACGAAACCAGAGGAA 61.486 60.000 0.00 0.00 0.00 3.36
285 286 0.036294 GGGGACGAAACCAGAGGAAG 60.036 60.000 0.00 0.00 0.00 3.46
286 287 0.685660 GGGACGAAACCAGAGGAAGT 59.314 55.000 0.00 0.00 0.00 3.01
287 288 1.337917 GGGACGAAACCAGAGGAAGTC 60.338 57.143 0.00 0.00 0.00 3.01
288 289 1.343465 GGACGAAACCAGAGGAAGTCA 59.657 52.381 0.00 0.00 0.00 3.41
289 290 2.405172 GACGAAACCAGAGGAAGTCAC 58.595 52.381 0.00 0.00 0.00 3.67
290 291 1.269621 ACGAAACCAGAGGAAGTCACG 60.270 52.381 0.00 0.00 0.00 4.35
291 292 1.797025 GAAACCAGAGGAAGTCACGG 58.203 55.000 0.00 0.00 0.00 4.94
292 293 0.250338 AAACCAGAGGAAGTCACGGC 60.250 55.000 0.00 0.00 0.00 5.68
293 294 2.125912 CCAGAGGAAGTCACGGCG 60.126 66.667 4.80 4.80 0.00 6.46
294 295 2.811317 CAGAGGAAGTCACGGCGC 60.811 66.667 6.90 0.00 0.00 6.53
295 296 2.992114 AGAGGAAGTCACGGCGCT 60.992 61.111 6.90 0.00 0.00 5.92
296 297 2.048127 GAGGAAGTCACGGCGCTT 60.048 61.111 6.90 1.54 0.00 4.68
297 298 1.214589 GAGGAAGTCACGGCGCTTA 59.785 57.895 6.90 0.00 0.00 3.09
298 299 0.802607 GAGGAAGTCACGGCGCTTAG 60.803 60.000 6.90 1.39 0.00 2.18
299 300 1.810030 GGAAGTCACGGCGCTTAGG 60.810 63.158 6.90 0.00 0.00 2.69
300 301 1.080025 GAAGTCACGGCGCTTAGGT 60.080 57.895 6.90 0.00 0.00 3.08
301 302 1.077089 GAAGTCACGGCGCTTAGGTC 61.077 60.000 6.90 0.00 0.00 3.85
302 303 1.812686 AAGTCACGGCGCTTAGGTCA 61.813 55.000 6.90 0.00 0.00 4.02
303 304 1.805945 GTCACGGCGCTTAGGTCAG 60.806 63.158 6.90 0.00 0.00 3.51
304 305 3.188786 CACGGCGCTTAGGTCAGC 61.189 66.667 6.90 0.00 36.33 4.26
305 306 4.452733 ACGGCGCTTAGGTCAGCC 62.453 66.667 6.90 0.00 45.67 4.85
307 308 4.143333 GGCGCTTAGGTCAGCCGA 62.143 66.667 7.64 0.00 40.17 5.54
308 309 2.886124 GCGCTTAGGTCAGCCGAC 60.886 66.667 0.00 0.00 41.80 4.79
309 310 2.885861 CGCTTAGGTCAGCCGACT 59.114 61.111 0.00 0.00 42.21 4.18
310 311 2.001361 GCGCTTAGGTCAGCCGACTA 62.001 60.000 0.00 0.00 42.21 2.59
311 312 0.029567 CGCTTAGGTCAGCCGACTAG 59.970 60.000 0.00 0.00 42.21 2.57
312 313 1.390565 GCTTAGGTCAGCCGACTAGA 58.609 55.000 0.00 0.00 42.21 2.43
313 314 1.335496 GCTTAGGTCAGCCGACTAGAG 59.665 57.143 0.00 0.00 42.21 2.43
314 315 1.335496 CTTAGGTCAGCCGACTAGAGC 59.665 57.143 0.00 0.00 42.21 4.09
315 316 0.814410 TAGGTCAGCCGACTAGAGCG 60.814 60.000 0.00 0.00 42.21 5.03
316 317 2.278271 GTCAGCCGACTAGAGCGC 60.278 66.667 0.00 0.00 39.22 5.92
317 318 2.438614 TCAGCCGACTAGAGCGCT 60.439 61.111 11.27 11.27 0.00 5.92
318 319 1.153229 TCAGCCGACTAGAGCGCTA 60.153 57.895 11.50 0.00 0.00 4.26
320 321 2.050805 GCCGACTAGAGCGCTAGC 60.051 66.667 22.66 14.64 46.55 3.42
332 333 1.959747 GCGCTAGCGTATTATCGACA 58.040 50.000 35.21 0.00 42.09 4.35
333 334 2.516923 GCGCTAGCGTATTATCGACAT 58.483 47.619 35.21 0.00 42.09 3.06
334 335 2.915463 GCGCTAGCGTATTATCGACATT 59.085 45.455 35.21 0.00 42.09 2.71
335 336 3.364023 GCGCTAGCGTATTATCGACATTT 59.636 43.478 35.21 0.00 42.09 2.32
336 337 4.143389 GCGCTAGCGTATTATCGACATTTT 60.143 41.667 35.21 0.00 42.09 1.82
337 338 5.060077 GCGCTAGCGTATTATCGACATTTTA 59.940 40.000 35.21 0.00 42.09 1.52
338 339 6.447824 CGCTAGCGTATTATCGACATTTTAC 58.552 40.000 28.66 0.00 34.35 2.01
339 340 6.087159 CGCTAGCGTATTATCGACATTTTACA 59.913 38.462 28.66 0.00 34.35 2.41
340 341 7.437912 GCTAGCGTATTATCGACATTTTACAG 58.562 38.462 0.00 0.00 0.00 2.74
341 342 7.114529 GCTAGCGTATTATCGACATTTTACAGT 59.885 37.037 0.00 0.00 0.00 3.55
342 343 9.603298 CTAGCGTATTATCGACATTTTACAGTA 57.397 33.333 0.00 0.00 0.00 2.74
343 344 8.861033 AGCGTATTATCGACATTTTACAGTAA 57.139 30.769 0.00 0.00 0.00 2.24
344 345 8.965172 AGCGTATTATCGACATTTTACAGTAAG 58.035 33.333 0.00 0.00 0.00 2.34
345 346 8.749499 GCGTATTATCGACATTTTACAGTAAGT 58.251 33.333 0.00 0.00 0.00 2.24
352 353 8.738199 TCGACATTTTACAGTAAGTTACAGAG 57.262 34.615 15.28 7.12 0.00 3.35
353 354 8.570488 TCGACATTTTACAGTAAGTTACAGAGA 58.430 33.333 15.28 0.00 0.00 3.10
354 355 9.355215 CGACATTTTACAGTAAGTTACAGAGAT 57.645 33.333 15.28 0.00 0.00 2.75
356 357 9.998106 ACATTTTACAGTAAGTTACAGAGATGT 57.002 29.630 15.28 11.81 0.00 3.06
362 363 7.828712 ACAGTAAGTTACAGAGATGTACTTCC 58.171 38.462 15.28 0.00 0.00 3.46
363 364 7.670559 ACAGTAAGTTACAGAGATGTACTTCCT 59.329 37.037 15.28 0.56 0.00 3.36
364 365 8.524487 CAGTAAGTTACAGAGATGTACTTCCTT 58.476 37.037 15.28 3.17 0.00 3.36
365 366 9.091220 AGTAAGTTACAGAGATGTACTTCCTTT 57.909 33.333 15.28 0.00 0.00 3.11
366 367 9.141400 GTAAGTTACAGAGATGTACTTCCTTTG 57.859 37.037 8.20 4.67 0.00 2.77
367 368 7.304497 AGTTACAGAGATGTACTTCCTTTGT 57.696 36.000 5.19 9.43 0.00 2.83
368 369 8.418597 AGTTACAGAGATGTACTTCCTTTGTA 57.581 34.615 5.19 8.62 0.00 2.41
369 370 8.867097 AGTTACAGAGATGTACTTCCTTTGTAA 58.133 33.333 17.21 17.21 0.00 2.41
370 371 9.485206 GTTACAGAGATGTACTTCCTTTGTAAA 57.515 33.333 20.00 10.34 32.37 2.01
371 372 7.964604 ACAGAGATGTACTTCCTTTGTAAAC 57.035 36.000 5.19 0.00 0.00 2.01
372 373 7.736893 ACAGAGATGTACTTCCTTTGTAAACT 58.263 34.615 5.19 0.00 0.00 2.66
373 374 8.867097 ACAGAGATGTACTTCCTTTGTAAACTA 58.133 33.333 5.19 0.00 0.00 2.24
374 375 9.877178 CAGAGATGTACTTCCTTTGTAAACTAT 57.123 33.333 5.19 0.00 0.00 2.12
375 376 9.877178 AGAGATGTACTTCCTTTGTAAACTATG 57.123 33.333 5.19 0.00 0.00 2.23
376 377 9.871238 GAGATGTACTTCCTTTGTAAACTATGA 57.129 33.333 5.19 0.00 0.00 2.15
385 386 8.193250 TCCTTTGTAAACTATGATCTAAACGC 57.807 34.615 0.00 0.00 0.00 4.84
386 387 8.038944 TCCTTTGTAAACTATGATCTAAACGCT 58.961 33.333 0.00 0.00 0.00 5.07
387 388 8.665685 CCTTTGTAAACTATGATCTAAACGCTT 58.334 33.333 0.00 0.00 0.00 4.68
408 409 8.362639 ACGCTTTTATATTAGTTTATCGAGGGA 58.637 33.333 0.00 0.00 0.00 4.20
422 423 9.543783 GTTTATCGAGGGAGTAATATTTTGTCT 57.456 33.333 0.00 0.00 0.00 3.41
445 446 3.403038 TCTCTAGTGCAAAAACTCTGCC 58.597 45.455 0.00 0.00 39.13 4.85
463 464 3.206964 TGCCGTGTTTGTTGTCAGATAA 58.793 40.909 0.00 0.00 0.00 1.75
466 467 4.675114 GCCGTGTTTGTTGTCAGATAAAAG 59.325 41.667 0.00 0.00 0.00 2.27
512 515 2.511600 CCGATCGGTCCTTGGTGC 60.512 66.667 26.35 0.00 0.00 5.01
518 521 2.751688 GGTCCTTGGTGCCGGTTA 59.248 61.111 1.90 0.00 0.00 2.85
538 541 6.166911 GTTAAGAACCAAGGAATTCTCGAC 57.833 41.667 5.23 0.00 34.01 4.20
539 542 3.336138 AGAACCAAGGAATTCTCGACC 57.664 47.619 5.23 0.00 28.79 4.79
540 543 2.000447 GAACCAAGGAATTCTCGACCG 59.000 52.381 5.23 0.00 0.00 4.79
541 544 1.263356 ACCAAGGAATTCTCGACCGA 58.737 50.000 5.23 0.00 0.00 4.69
542 545 1.204941 ACCAAGGAATTCTCGACCGAG 59.795 52.381 12.77 12.77 43.21 4.63
559 569 7.039270 TCGACCGAGAATTATCAAAATCAGAA 58.961 34.615 0.35 0.00 0.00 3.02
580 590 8.303876 TCAGAAAAATAAATTACTCCACTTGGC 58.696 33.333 0.00 0.00 34.44 4.52
589 599 0.181350 CTCCACTTGGCCCATAGTCC 59.819 60.000 0.00 0.00 34.44 3.85
590 600 0.253160 TCCACTTGGCCCATAGTCCT 60.253 55.000 0.00 0.00 34.44 3.85
593 603 2.557452 CCACTTGGCCCATAGTCCTTTT 60.557 50.000 0.00 0.00 0.00 2.27
594 604 3.308832 CCACTTGGCCCATAGTCCTTTTA 60.309 47.826 0.00 0.00 0.00 1.52
595 605 4.536765 CACTTGGCCCATAGTCCTTTTAT 58.463 43.478 0.00 0.00 0.00 1.40
596 606 4.956075 CACTTGGCCCATAGTCCTTTTATT 59.044 41.667 0.00 0.00 0.00 1.40
597 607 5.422012 CACTTGGCCCATAGTCCTTTTATTT 59.578 40.000 0.00 0.00 0.00 1.40
598 608 6.605594 CACTTGGCCCATAGTCCTTTTATTTA 59.394 38.462 0.00 0.00 0.00 1.40
599 609 6.833933 ACTTGGCCCATAGTCCTTTTATTTAG 59.166 38.462 0.00 0.00 0.00 1.85
664 679 1.854743 CGATGTAGAAGCATCACCACG 59.145 52.381 6.83 0.00 43.92 4.94
808 824 2.031163 CCCCTTCGATCCATCCGC 59.969 66.667 0.00 0.00 0.00 5.54
922 947 3.052262 TCTCTCTCATCCCTCAATCCAGT 60.052 47.826 0.00 0.00 0.00 4.00
928 953 2.268796 TCCCTCAATCCAGTGGATGA 57.731 50.000 25.51 20.84 42.27 2.92
993 1045 7.343316 TGTTTGGTTGATTTCTAGAGGGAAAAA 59.657 33.333 0.00 0.00 38.46 1.94
994 1046 6.894339 TGGTTGATTTCTAGAGGGAAAAAC 57.106 37.500 0.00 0.00 38.46 2.43
1516 1568 1.445410 GTCATGCACGAGTACCGCA 60.445 57.895 0.00 2.07 43.32 5.69
1612 1664 3.069872 AGCAACATCTTTTCACCATGCAA 59.930 39.130 0.00 0.00 35.11 4.08
1613 1665 3.184986 GCAACATCTTTTCACCATGCAAC 59.815 43.478 0.00 0.00 33.00 4.17
1614 1666 4.370049 CAACATCTTTTCACCATGCAACA 58.630 39.130 0.00 0.00 0.00 3.33
1615 1667 4.877378 ACATCTTTTCACCATGCAACAT 57.123 36.364 0.00 0.00 0.00 2.71
1616 1668 4.562082 ACATCTTTTCACCATGCAACATG 58.438 39.130 0.00 0.48 0.00 3.21
1617 1669 4.039488 ACATCTTTTCACCATGCAACATGT 59.961 37.500 6.80 0.00 0.00 3.21
1618 1670 5.243507 ACATCTTTTCACCATGCAACATGTA 59.756 36.000 0.00 0.00 0.00 2.29
1619 1671 5.981088 TCTTTTCACCATGCAACATGTAT 57.019 34.783 0.00 0.00 0.00 2.29
1620 1672 5.953183 TCTTTTCACCATGCAACATGTATC 58.047 37.500 0.00 0.00 0.00 2.24
1621 1673 5.711506 TCTTTTCACCATGCAACATGTATCT 59.288 36.000 0.00 0.00 0.00 1.98
1622 1674 5.981088 TTTCACCATGCAACATGTATCTT 57.019 34.783 0.00 0.00 0.00 2.40
1623 1675 4.968812 TCACCATGCAACATGTATCTTG 57.031 40.909 0.00 2.71 0.00 3.02
1624 1676 3.129113 TCACCATGCAACATGTATCTTGC 59.871 43.478 12.35 12.35 42.67 4.01
1625 1677 3.129813 CACCATGCAACATGTATCTTGCT 59.870 43.478 18.38 4.65 42.77 3.91
1626 1678 3.765511 ACCATGCAACATGTATCTTGCTT 59.234 39.130 18.38 11.15 42.77 3.91
1670 1722 8.921353 ATATACTTGGTCAGTCGTAGTAATCT 57.079 34.615 0.00 0.00 36.88 2.40
1692 1744 3.107447 CCGGCCGGTTATCTTTGC 58.893 61.111 36.64 0.00 0.00 3.68
1733 1785 1.528129 GGGTGTTCAAGAAGAGCCTG 58.472 55.000 17.76 0.00 45.42 4.85
1734 1786 0.877743 GGTGTTCAAGAAGAGCCTGC 59.122 55.000 0.00 0.00 0.00 4.85
1795 1847 3.733960 GAAAAGCGGCGTGGGGAC 61.734 66.667 9.37 0.00 0.00 4.46
1946 1998 1.152830 GGGCCAGTTCTTCAACCCA 59.847 57.895 4.39 0.00 37.30 4.51
2231 2283 1.137282 GTGAACCCCGAGATCTCTTCC 59.863 57.143 20.26 7.80 0.00 3.46
2341 2393 5.008712 AGGATCGATCGATTATTAGCGCATA 59.991 40.000 29.89 0.00 34.60 3.14
2352 2404 4.043168 GCGCATATACCGGTGCTT 57.957 55.556 19.93 4.38 39.16 3.91
2355 2407 0.859232 CGCATATACCGGTGCTTGAC 59.141 55.000 19.93 7.02 39.16 3.18
2459 2515 0.540365 AGCAGTGTGGTGATTTGGGG 60.540 55.000 0.00 0.00 0.00 4.96
2493 2549 6.554784 AGCATTATTGTATTGGGATCCATCA 58.445 36.000 15.23 0.00 31.53 3.07
2495 2551 7.676893 AGCATTATTGTATTGGGATCCATCAAT 59.323 33.333 15.23 16.46 35.60 2.57
2503 2559 8.474831 TGTATTGGGATCCATCAATATACTACG 58.525 37.037 20.05 0.00 37.90 3.51
2614 2670 4.380023 GCAGGTCGATCAGTTAGGCTATAG 60.380 50.000 0.00 0.00 0.00 1.31
2616 2672 5.650266 CAGGTCGATCAGTTAGGCTATAGAT 59.350 44.000 3.21 0.00 0.00 1.98
2618 2674 7.011950 CAGGTCGATCAGTTAGGCTATAGATAG 59.988 44.444 3.21 0.72 0.00 2.08
2620 2676 7.011669 GGTCGATCAGTTAGGCTATAGATAGAC 59.988 44.444 21.97 21.97 38.73 2.59
2664 2720 4.822896 ACTATGTGGTGAGTAGCTAGCTAC 59.177 45.833 37.13 37.13 46.70 3.58
2832 2888 0.320683 TGACTGGCATGTCTCAACCG 60.321 55.000 14.98 0.00 37.79 4.44
2890 2946 2.230940 GGATCACATCACGTCGCCG 61.231 63.158 0.00 0.00 40.83 6.46
2931 2987 1.348008 ATGACATGATGGGGGCGAGT 61.348 55.000 0.00 0.00 0.00 4.18
2967 3070 1.236616 CCGTGCCTTGTCTCAATGCA 61.237 55.000 7.99 7.99 0.00 3.96
3022 3125 1.596477 GGCATCTGATCGAGTGGGC 60.596 63.158 0.00 0.00 0.00 5.36
3026 3129 4.227134 CTGATCGAGTGGGCCCCG 62.227 72.222 22.27 16.64 0.00 5.73
3039 3142 2.901042 CCCCGCACCTCCTTAGTC 59.099 66.667 0.00 0.00 0.00 2.59
3088 3191 3.354948 TGGTGGATCCAGTTCATGAAG 57.645 47.619 16.81 0.00 41.93 3.02
3093 3196 5.762218 GGTGGATCCAGTTCATGAAGATTAG 59.238 44.000 16.81 0.00 35.97 1.73
3097 3200 9.379770 TGGATCCAGTTCATGAAGATTAGTATA 57.620 33.333 11.44 0.00 0.00 1.47
3151 3330 3.322254 AGAGAATTAGGGAGTATGTGGCG 59.678 47.826 0.00 0.00 0.00 5.69
3187 3366 4.379339 GTTAGGTCAGCTAACCAGAGAG 57.621 50.000 14.82 0.00 42.12 3.20
3188 3367 2.909504 AGGTCAGCTAACCAGAGAGA 57.090 50.000 9.27 0.00 42.12 3.10
3189 3368 2.733956 AGGTCAGCTAACCAGAGAGAG 58.266 52.381 9.27 0.00 42.12 3.20
3190 3369 2.310349 AGGTCAGCTAACCAGAGAGAGA 59.690 50.000 9.27 0.00 42.12 3.10
3191 3370 2.687935 GGTCAGCTAACCAGAGAGAGAG 59.312 54.545 0.00 0.00 39.27 3.20
3192 3371 3.616219 GTCAGCTAACCAGAGAGAGAGA 58.384 50.000 0.00 0.00 0.00 3.10
3193 3372 3.627577 GTCAGCTAACCAGAGAGAGAGAG 59.372 52.174 0.00 0.00 0.00 3.20
3194 3373 3.521531 TCAGCTAACCAGAGAGAGAGAGA 59.478 47.826 0.00 0.00 0.00 3.10
3195 3374 3.879295 CAGCTAACCAGAGAGAGAGAGAG 59.121 52.174 0.00 0.00 0.00 3.20
3196 3375 3.780294 AGCTAACCAGAGAGAGAGAGAGA 59.220 47.826 0.00 0.00 0.00 3.10
3197 3376 4.130118 GCTAACCAGAGAGAGAGAGAGAG 58.870 52.174 0.00 0.00 0.00 3.20
3198 3377 4.141711 GCTAACCAGAGAGAGAGAGAGAGA 60.142 50.000 0.00 0.00 0.00 3.10
3199 3378 4.494091 AACCAGAGAGAGAGAGAGAGAG 57.506 50.000 0.00 0.00 0.00 3.20
3200 3379 3.724478 ACCAGAGAGAGAGAGAGAGAGA 58.276 50.000 0.00 0.00 0.00 3.10
3201 3380 3.708631 ACCAGAGAGAGAGAGAGAGAGAG 59.291 52.174 0.00 0.00 0.00 3.20
3230 3409 0.951558 GAGAGAGAGCGCTTCCCTAG 59.048 60.000 13.26 0.00 0.00 3.02
3264 3443 1.003442 CCAGGGAGGGAGGTGATGA 59.997 63.158 0.00 0.00 0.00 2.92
3272 3451 0.179000 GGGAGGTGATGAGCGAATGT 59.821 55.000 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.458716 GTAGTCAACGGAGCTCCAGC 60.459 60.000 31.67 15.70 42.49 4.85
1 2 3.723554 GTAGTCAACGGAGCTCCAG 57.276 57.895 31.67 24.69 35.14 3.86
16 17 0.458025 GTTCTTCCCGCTGGACGTAG 60.458 60.000 0.00 0.00 41.57 3.51
17 18 0.896940 AGTTCTTCCCGCTGGACGTA 60.897 55.000 0.00 0.00 41.57 3.57
18 19 2.156051 GAGTTCTTCCCGCTGGACGT 62.156 60.000 0.00 0.00 41.57 4.34
19 20 1.446272 GAGTTCTTCCCGCTGGACG 60.446 63.158 0.00 0.00 41.57 4.79
20 21 1.446272 CGAGTTCTTCCCGCTGGAC 60.446 63.158 0.00 0.00 41.57 4.02
21 22 1.595993 CTCGAGTTCTTCCCGCTGGA 61.596 60.000 3.62 0.00 39.54 3.86
22 23 1.153745 CTCGAGTTCTTCCCGCTGG 60.154 63.158 3.62 0.00 0.00 4.85
23 24 1.153745 CCTCGAGTTCTTCCCGCTG 60.154 63.158 12.31 0.00 0.00 5.18
24 25 2.352032 CCCTCGAGTTCTTCCCGCT 61.352 63.158 12.31 0.00 0.00 5.52
25 26 2.184579 CCCTCGAGTTCTTCCCGC 59.815 66.667 12.31 0.00 0.00 6.13
26 27 2.722201 CCCCCTCGAGTTCTTCCCG 61.722 68.421 12.31 0.00 0.00 5.14
27 28 3.310652 CCCCCTCGAGTTCTTCCC 58.689 66.667 12.31 0.00 0.00 3.97
44 45 2.103339 TTGTCTTCCGGGGTTCGACC 62.103 60.000 0.00 0.00 42.43 4.79
45 46 0.249996 TTTGTCTTCCGGGGTTCGAC 60.250 55.000 0.00 2.12 42.43 4.20
46 47 0.688487 ATTTGTCTTCCGGGGTTCGA 59.312 50.000 0.00 0.00 42.43 3.71
47 48 1.467342 GAATTTGTCTTCCGGGGTTCG 59.533 52.381 0.00 0.00 38.88 3.95
48 49 1.467342 CGAATTTGTCTTCCGGGGTTC 59.533 52.381 0.00 0.00 0.00 3.62
49 50 1.072648 TCGAATTTGTCTTCCGGGGTT 59.927 47.619 0.00 0.00 0.00 4.11
50 51 0.688487 TCGAATTTGTCTTCCGGGGT 59.312 50.000 0.00 0.00 0.00 4.95
51 52 1.737793 CTTCGAATTTGTCTTCCGGGG 59.262 52.381 0.00 0.00 0.00 5.73
52 53 2.695359 TCTTCGAATTTGTCTTCCGGG 58.305 47.619 0.00 0.00 0.00 5.73
53 54 3.994392 TCTTCTTCGAATTTGTCTTCCGG 59.006 43.478 0.00 0.00 0.00 5.14
54 55 5.591643 TTCTTCTTCGAATTTGTCTTCCG 57.408 39.130 0.00 0.00 0.00 4.30
55 56 5.049405 TGCTTCTTCTTCGAATTTGTCTTCC 60.049 40.000 0.00 0.00 0.00 3.46
56 57 5.848559 GTGCTTCTTCTTCGAATTTGTCTTC 59.151 40.000 0.00 0.00 0.00 2.87
57 58 5.278022 GGTGCTTCTTCTTCGAATTTGTCTT 60.278 40.000 0.00 0.00 0.00 3.01
58 59 4.214332 GGTGCTTCTTCTTCGAATTTGTCT 59.786 41.667 0.00 0.00 0.00 3.41
59 60 4.214332 AGGTGCTTCTTCTTCGAATTTGTC 59.786 41.667 0.00 0.00 0.00 3.18
60 61 4.137543 AGGTGCTTCTTCTTCGAATTTGT 58.862 39.130 0.00 0.00 0.00 2.83
61 62 4.378874 GGAGGTGCTTCTTCTTCGAATTTG 60.379 45.833 0.00 0.00 0.00 2.32
62 63 3.753797 GGAGGTGCTTCTTCTTCGAATTT 59.246 43.478 0.00 0.00 0.00 1.82
63 64 3.244561 TGGAGGTGCTTCTTCTTCGAATT 60.245 43.478 0.00 0.00 0.00 2.17
64 65 2.303022 TGGAGGTGCTTCTTCTTCGAAT 59.697 45.455 0.00 0.00 0.00 3.34
65 66 1.691976 TGGAGGTGCTTCTTCTTCGAA 59.308 47.619 0.00 0.00 0.00 3.71
66 67 1.338107 TGGAGGTGCTTCTTCTTCGA 58.662 50.000 0.00 0.00 0.00 3.71
67 68 2.093764 AGATGGAGGTGCTTCTTCTTCG 60.094 50.000 0.00 0.00 0.00 3.79
68 69 3.269178 CAGATGGAGGTGCTTCTTCTTC 58.731 50.000 0.00 0.00 0.00 2.87
69 70 2.641815 ACAGATGGAGGTGCTTCTTCTT 59.358 45.455 0.00 0.00 0.00 2.52
70 71 2.235898 GACAGATGGAGGTGCTTCTTCT 59.764 50.000 0.00 0.00 0.00 2.85
71 72 2.626840 GACAGATGGAGGTGCTTCTTC 58.373 52.381 0.00 0.00 0.00 2.87
72 73 1.280421 GGACAGATGGAGGTGCTTCTT 59.720 52.381 0.00 0.00 0.00 2.52
73 74 0.908198 GGACAGATGGAGGTGCTTCT 59.092 55.000 0.00 0.00 0.00 2.85
74 75 0.615331 TGGACAGATGGAGGTGCTTC 59.385 55.000 0.00 0.00 0.00 3.86
75 76 1.067295 TTGGACAGATGGAGGTGCTT 58.933 50.000 0.00 0.00 0.00 3.91
76 77 1.211457 GATTGGACAGATGGAGGTGCT 59.789 52.381 0.00 0.00 0.00 4.40
77 78 1.673168 GATTGGACAGATGGAGGTGC 58.327 55.000 0.00 0.00 0.00 5.01
78 79 1.208052 ACGATTGGACAGATGGAGGTG 59.792 52.381 0.00 0.00 0.00 4.00
79 80 1.482593 GACGATTGGACAGATGGAGGT 59.517 52.381 0.00 0.00 0.00 3.85
80 81 1.536922 CGACGATTGGACAGATGGAGG 60.537 57.143 0.00 0.00 0.00 4.30
81 82 1.845266 CGACGATTGGACAGATGGAG 58.155 55.000 0.00 0.00 0.00 3.86
82 83 0.179111 GCGACGATTGGACAGATGGA 60.179 55.000 0.00 0.00 0.00 3.41
83 84 0.460109 TGCGACGATTGGACAGATGG 60.460 55.000 0.00 0.00 0.00 3.51
84 85 0.647410 GTGCGACGATTGGACAGATG 59.353 55.000 0.00 0.00 0.00 2.90
85 86 0.460284 GGTGCGACGATTGGACAGAT 60.460 55.000 0.00 0.00 0.00 2.90
86 87 1.080093 GGTGCGACGATTGGACAGA 60.080 57.895 0.00 0.00 0.00 3.41
87 88 1.354337 CTGGTGCGACGATTGGACAG 61.354 60.000 0.00 0.00 0.00 3.51
88 89 1.374125 CTGGTGCGACGATTGGACA 60.374 57.895 0.00 0.00 0.00 4.02
89 90 2.740714 GCTGGTGCGACGATTGGAC 61.741 63.158 0.00 0.00 0.00 4.02
90 91 2.434185 GCTGGTGCGACGATTGGA 60.434 61.111 0.00 0.00 0.00 3.53
91 92 2.244436 CTTGCTGGTGCGACGATTGG 62.244 60.000 0.00 0.00 43.34 3.16
92 93 1.133253 CTTGCTGGTGCGACGATTG 59.867 57.895 0.00 0.00 43.34 2.67
93 94 2.034879 CCTTGCTGGTGCGACGATT 61.035 57.895 0.00 0.00 43.34 3.34
94 95 2.434884 CCTTGCTGGTGCGACGAT 60.435 61.111 0.00 0.00 43.34 3.73
95 96 3.611674 TCCTTGCTGGTGCGACGA 61.612 61.111 0.00 0.00 43.34 4.20
96 97 2.486636 TAGTCCTTGCTGGTGCGACG 62.487 60.000 0.00 0.00 43.34 5.12
97 98 0.320421 TTAGTCCTTGCTGGTGCGAC 60.320 55.000 0.00 0.00 43.34 5.19
98 99 0.394938 TTTAGTCCTTGCTGGTGCGA 59.605 50.000 0.00 0.00 43.34 5.10
99 100 1.234821 TTTTAGTCCTTGCTGGTGCG 58.765 50.000 0.00 0.00 43.34 5.34
100 101 3.367395 GGATTTTTAGTCCTTGCTGGTGC 60.367 47.826 0.00 0.00 37.07 5.01
101 102 4.082125 AGGATTTTTAGTCCTTGCTGGTG 58.918 43.478 0.00 0.00 43.52 4.17
102 103 4.388577 AGGATTTTTAGTCCTTGCTGGT 57.611 40.909 0.00 0.00 43.52 4.00
103 104 5.125578 GGTTAGGATTTTTAGTCCTTGCTGG 59.874 44.000 0.00 0.00 43.52 4.85
104 105 5.946377 AGGTTAGGATTTTTAGTCCTTGCTG 59.054 40.000 0.00 0.00 43.52 4.41
105 106 6.140968 AGGTTAGGATTTTTAGTCCTTGCT 57.859 37.500 0.00 0.00 43.52 3.91
106 107 7.933215 TTAGGTTAGGATTTTTAGTCCTTGC 57.067 36.000 0.00 0.00 43.52 4.01
118 119 9.828039 CTTCGGTTAGTAATTTAGGTTAGGATT 57.172 33.333 0.00 0.00 0.00 3.01
119 120 7.930325 GCTTCGGTTAGTAATTTAGGTTAGGAT 59.070 37.037 0.00 0.00 0.00 3.24
120 121 7.267857 GCTTCGGTTAGTAATTTAGGTTAGGA 58.732 38.462 0.00 0.00 0.00 2.94
121 122 6.199719 CGCTTCGGTTAGTAATTTAGGTTAGG 59.800 42.308 0.00 0.00 0.00 2.69
122 123 6.974622 TCGCTTCGGTTAGTAATTTAGGTTAG 59.025 38.462 0.00 0.00 0.00 2.34
123 124 6.862209 TCGCTTCGGTTAGTAATTTAGGTTA 58.138 36.000 0.00 0.00 0.00 2.85
124 125 5.723295 TCGCTTCGGTTAGTAATTTAGGTT 58.277 37.500 0.00 0.00 0.00 3.50
125 126 5.329035 TCGCTTCGGTTAGTAATTTAGGT 57.671 39.130 0.00 0.00 0.00 3.08
126 127 6.020041 GTCTTCGCTTCGGTTAGTAATTTAGG 60.020 42.308 0.00 0.00 0.00 2.69
127 128 6.529125 TGTCTTCGCTTCGGTTAGTAATTTAG 59.471 38.462 0.00 0.00 0.00 1.85
128 129 6.308766 GTGTCTTCGCTTCGGTTAGTAATTTA 59.691 38.462 0.00 0.00 0.00 1.40
129 130 5.119743 GTGTCTTCGCTTCGGTTAGTAATTT 59.880 40.000 0.00 0.00 0.00 1.82
130 131 4.624452 GTGTCTTCGCTTCGGTTAGTAATT 59.376 41.667 0.00 0.00 0.00 1.40
131 132 4.171754 GTGTCTTCGCTTCGGTTAGTAAT 58.828 43.478 0.00 0.00 0.00 1.89
132 133 3.568538 GTGTCTTCGCTTCGGTTAGTAA 58.431 45.455 0.00 0.00 0.00 2.24
133 134 2.095059 GGTGTCTTCGCTTCGGTTAGTA 60.095 50.000 0.00 0.00 0.00 1.82
134 135 1.336609 GGTGTCTTCGCTTCGGTTAGT 60.337 52.381 0.00 0.00 0.00 2.24
135 136 1.336517 TGGTGTCTTCGCTTCGGTTAG 60.337 52.381 0.00 0.00 0.00 2.34
136 137 0.675083 TGGTGTCTTCGCTTCGGTTA 59.325 50.000 0.00 0.00 0.00 2.85
137 138 0.600255 CTGGTGTCTTCGCTTCGGTT 60.600 55.000 0.00 0.00 0.00 4.44
138 139 1.006102 CTGGTGTCTTCGCTTCGGT 60.006 57.895 0.00 0.00 0.00 4.69
139 140 0.108615 ATCTGGTGTCTTCGCTTCGG 60.109 55.000 0.00 0.00 0.00 4.30
140 141 1.714794 AATCTGGTGTCTTCGCTTCG 58.285 50.000 0.00 0.00 0.00 3.79
141 142 2.416893 GGAAATCTGGTGTCTTCGCTTC 59.583 50.000 0.00 0.00 0.00 3.86
142 143 2.427506 GGAAATCTGGTGTCTTCGCTT 58.572 47.619 0.00 0.00 0.00 4.68
143 144 1.339151 GGGAAATCTGGTGTCTTCGCT 60.339 52.381 0.00 0.00 0.00 4.93
144 145 1.087501 GGGAAATCTGGTGTCTTCGC 58.912 55.000 0.00 0.00 0.00 4.70
145 146 2.770164 AGGGAAATCTGGTGTCTTCG 57.230 50.000 0.00 0.00 0.00 3.79
146 147 3.348119 GGAAGGGAAATCTGGTGTCTTC 58.652 50.000 0.00 0.00 0.00 2.87
147 148 2.041755 GGGAAGGGAAATCTGGTGTCTT 59.958 50.000 0.00 0.00 0.00 3.01
148 149 1.636003 GGGAAGGGAAATCTGGTGTCT 59.364 52.381 0.00 0.00 0.00 3.41
149 150 1.636003 AGGGAAGGGAAATCTGGTGTC 59.364 52.381 0.00 0.00 0.00 3.67
150 151 1.636003 GAGGGAAGGGAAATCTGGTGT 59.364 52.381 0.00 0.00 0.00 4.16
151 152 1.064389 GGAGGGAAGGGAAATCTGGTG 60.064 57.143 0.00 0.00 0.00 4.17
152 153 1.299939 GGAGGGAAGGGAAATCTGGT 58.700 55.000 0.00 0.00 0.00 4.00
153 154 1.064389 GTGGAGGGAAGGGAAATCTGG 60.064 57.143 0.00 0.00 0.00 3.86
154 155 1.064389 GGTGGAGGGAAGGGAAATCTG 60.064 57.143 0.00 0.00 0.00 2.90
155 156 1.299939 GGTGGAGGGAAGGGAAATCT 58.700 55.000 0.00 0.00 0.00 2.40
156 157 0.107165 CGGTGGAGGGAAGGGAAATC 60.107 60.000 0.00 0.00 0.00 2.17
157 158 1.571773 CCGGTGGAGGGAAGGGAAAT 61.572 60.000 0.00 0.00 0.00 2.17
158 159 2.228480 CCGGTGGAGGGAAGGGAAA 61.228 63.158 0.00 0.00 0.00 3.13
159 160 2.609610 CCGGTGGAGGGAAGGGAA 60.610 66.667 0.00 0.00 0.00 3.97
160 161 3.607299 TCCGGTGGAGGGAAGGGA 61.607 66.667 0.00 0.00 0.00 4.20
161 162 3.400054 GTCCGGTGGAGGGAAGGG 61.400 72.222 0.00 0.00 34.80 3.95
162 163 1.972660 GATGTCCGGTGGAGGGAAGG 61.973 65.000 0.00 0.00 34.80 3.46
163 164 1.264749 TGATGTCCGGTGGAGGGAAG 61.265 60.000 0.00 0.00 34.80 3.46
164 165 1.229368 TGATGTCCGGTGGAGGGAA 60.229 57.895 0.00 0.00 34.80 3.97
165 166 1.685765 CTGATGTCCGGTGGAGGGA 60.686 63.158 0.00 0.00 29.39 4.20
166 167 1.680522 CTCTGATGTCCGGTGGAGGG 61.681 65.000 0.00 0.00 29.39 4.30
167 168 0.972983 ACTCTGATGTCCGGTGGAGG 60.973 60.000 0.00 0.00 29.39 4.30
168 169 0.898320 AACTCTGATGTCCGGTGGAG 59.102 55.000 0.00 4.16 29.39 3.86
169 170 0.608130 CAACTCTGATGTCCGGTGGA 59.392 55.000 0.00 0.00 0.00 4.02
170 171 0.321671 ACAACTCTGATGTCCGGTGG 59.678 55.000 0.00 0.00 0.00 4.61
171 172 2.492088 TCTACAACTCTGATGTCCGGTG 59.508 50.000 0.00 0.00 32.27 4.94
172 173 2.492484 GTCTACAACTCTGATGTCCGGT 59.508 50.000 0.00 0.00 32.27 5.28
173 174 2.492088 TGTCTACAACTCTGATGTCCGG 59.508 50.000 0.00 0.00 32.27 5.14
174 175 3.440522 TCTGTCTACAACTCTGATGTCCG 59.559 47.826 0.00 0.00 32.27 4.79
175 176 4.142271 CCTCTGTCTACAACTCTGATGTCC 60.142 50.000 0.00 0.00 32.27 4.02
176 177 4.142271 CCCTCTGTCTACAACTCTGATGTC 60.142 50.000 0.00 0.00 32.27 3.06
177 178 3.766591 CCCTCTGTCTACAACTCTGATGT 59.233 47.826 0.00 0.00 34.81 3.06
178 179 3.131933 CCCCTCTGTCTACAACTCTGATG 59.868 52.174 0.00 0.00 0.00 3.07
179 180 3.011821 TCCCCTCTGTCTACAACTCTGAT 59.988 47.826 0.00 0.00 0.00 2.90
180 181 2.378886 TCCCCTCTGTCTACAACTCTGA 59.621 50.000 0.00 0.00 0.00 3.27
181 182 2.757868 CTCCCCTCTGTCTACAACTCTG 59.242 54.545 0.00 0.00 0.00 3.35
182 183 2.650322 TCTCCCCTCTGTCTACAACTCT 59.350 50.000 0.00 0.00 0.00 3.24
183 184 2.756207 GTCTCCCCTCTGTCTACAACTC 59.244 54.545 0.00 0.00 0.00 3.01
184 185 2.380590 AGTCTCCCCTCTGTCTACAACT 59.619 50.000 0.00 0.00 0.00 3.16
185 186 2.810164 AGTCTCCCCTCTGTCTACAAC 58.190 52.381 0.00 0.00 0.00 3.32
186 187 4.669866 TTAGTCTCCCCTCTGTCTACAA 57.330 45.455 0.00 0.00 0.00 2.41
187 188 4.386536 GGATTAGTCTCCCCTCTGTCTACA 60.387 50.000 0.00 0.00 0.00 2.74
188 189 4.146564 GGATTAGTCTCCCCTCTGTCTAC 58.853 52.174 0.00 0.00 0.00 2.59
189 190 3.792114 TGGATTAGTCTCCCCTCTGTCTA 59.208 47.826 0.00 0.00 34.12 2.59
190 191 2.587777 TGGATTAGTCTCCCCTCTGTCT 59.412 50.000 0.00 0.00 34.12 3.41
191 192 3.033659 TGGATTAGTCTCCCCTCTGTC 57.966 52.381 0.00 0.00 34.12 3.51
192 193 3.312890 CATGGATTAGTCTCCCCTCTGT 58.687 50.000 0.00 0.00 34.12 3.41
193 194 2.636893 CCATGGATTAGTCTCCCCTCTG 59.363 54.545 5.56 0.00 34.12 3.35
194 195 2.428484 CCCATGGATTAGTCTCCCCTCT 60.428 54.545 15.22 0.00 34.12 3.69
195 196 1.981495 CCCATGGATTAGTCTCCCCTC 59.019 57.143 15.22 0.00 34.12 4.30
196 197 1.298382 ACCCATGGATTAGTCTCCCCT 59.702 52.381 15.22 0.00 34.12 4.79
197 198 1.821088 ACCCATGGATTAGTCTCCCC 58.179 55.000 15.22 0.00 34.12 4.81
198 199 2.224305 CGAACCCATGGATTAGTCTCCC 60.224 54.545 15.22 0.00 34.12 4.30
199 200 2.434702 ACGAACCCATGGATTAGTCTCC 59.565 50.000 15.22 0.00 35.74 3.71
200 201 3.718815 GACGAACCCATGGATTAGTCTC 58.281 50.000 21.53 0.40 0.00 3.36
201 202 2.100916 CGACGAACCCATGGATTAGTCT 59.899 50.000 24.69 0.00 0.00 3.24
202 203 2.470821 CGACGAACCCATGGATTAGTC 58.529 52.381 19.50 19.50 0.00 2.59
203 204 1.138266 CCGACGAACCCATGGATTAGT 59.862 52.381 15.22 9.30 0.00 2.24
204 205 1.138266 ACCGACGAACCCATGGATTAG 59.862 52.381 15.22 5.08 0.00 1.73
205 206 1.134640 CACCGACGAACCCATGGATTA 60.135 52.381 15.22 0.00 0.00 1.75
206 207 0.392461 CACCGACGAACCCATGGATT 60.392 55.000 15.22 0.00 0.00 3.01
207 208 1.220749 CACCGACGAACCCATGGAT 59.779 57.895 15.22 0.46 0.00 3.41
208 209 1.473497 TTCACCGACGAACCCATGGA 61.473 55.000 15.22 0.00 0.00 3.41
209 210 1.004320 TTCACCGACGAACCCATGG 60.004 57.895 4.14 4.14 0.00 3.66
210 211 0.320421 ACTTCACCGACGAACCCATG 60.320 55.000 0.00 0.00 0.00 3.66
211 212 0.037605 GACTTCACCGACGAACCCAT 60.038 55.000 0.00 0.00 0.00 4.00
212 213 1.111116 AGACTTCACCGACGAACCCA 61.111 55.000 0.00 0.00 0.00 4.51
213 214 0.666577 CAGACTTCACCGACGAACCC 60.667 60.000 0.00 0.00 0.00 4.11
214 215 0.313043 TCAGACTTCACCGACGAACC 59.687 55.000 0.00 0.00 0.00 3.62
215 216 2.129823 TTCAGACTTCACCGACGAAC 57.870 50.000 0.00 0.00 0.00 3.95
216 217 2.545113 CCTTTCAGACTTCACCGACGAA 60.545 50.000 0.00 0.00 0.00 3.85
217 218 1.000607 CCTTTCAGACTTCACCGACGA 60.001 52.381 0.00 0.00 0.00 4.20
218 219 1.000607 TCCTTTCAGACTTCACCGACG 60.001 52.381 0.00 0.00 0.00 5.12
219 220 2.296471 TCTCCTTTCAGACTTCACCGAC 59.704 50.000 0.00 0.00 0.00 4.79
220 221 2.594131 TCTCCTTTCAGACTTCACCGA 58.406 47.619 0.00 0.00 0.00 4.69
221 222 3.243907 ACTTCTCCTTTCAGACTTCACCG 60.244 47.826 0.00 0.00 0.00 4.94
222 223 4.344359 ACTTCTCCTTTCAGACTTCACC 57.656 45.455 0.00 0.00 0.00 4.02
223 224 5.504830 GCAAACTTCTCCTTTCAGACTTCAC 60.505 44.000 0.00 0.00 0.00 3.18
224 225 4.576463 GCAAACTTCTCCTTTCAGACTTCA 59.424 41.667 0.00 0.00 0.00 3.02
225 226 4.023622 GGCAAACTTCTCCTTTCAGACTTC 60.024 45.833 0.00 0.00 0.00 3.01
226 227 3.885901 GGCAAACTTCTCCTTTCAGACTT 59.114 43.478 0.00 0.00 0.00 3.01
227 228 3.481453 GGCAAACTTCTCCTTTCAGACT 58.519 45.455 0.00 0.00 0.00 3.24
228 229 2.554462 GGGCAAACTTCTCCTTTCAGAC 59.446 50.000 0.00 0.00 0.00 3.51
229 230 2.443255 AGGGCAAACTTCTCCTTTCAGA 59.557 45.455 0.00 0.00 0.00 3.27
230 231 2.868899 AGGGCAAACTTCTCCTTTCAG 58.131 47.619 0.00 0.00 0.00 3.02
231 232 3.810743 GCTAGGGCAAACTTCTCCTTTCA 60.811 47.826 0.00 0.00 38.54 2.69
232 233 2.750166 GCTAGGGCAAACTTCTCCTTTC 59.250 50.000 0.00 0.00 38.54 2.62
233 234 2.555448 GGCTAGGGCAAACTTCTCCTTT 60.555 50.000 0.00 0.00 40.87 3.11
234 235 1.004862 GGCTAGGGCAAACTTCTCCTT 59.995 52.381 0.00 0.00 40.87 3.36
235 236 0.621082 GGCTAGGGCAAACTTCTCCT 59.379 55.000 0.00 0.00 40.87 3.69
236 237 0.328258 TGGCTAGGGCAAACTTCTCC 59.672 55.000 0.00 0.00 40.87 3.71
237 238 1.454201 GTGGCTAGGGCAAACTTCTC 58.546 55.000 0.00 0.00 40.46 2.87
238 239 0.038310 GGTGGCTAGGGCAAACTTCT 59.962 55.000 0.00 0.00 40.46 2.85
239 240 0.038310 AGGTGGCTAGGGCAAACTTC 59.962 55.000 0.00 0.00 35.57 3.01
240 241 1.282157 CTAGGTGGCTAGGGCAAACTT 59.718 52.381 0.00 0.00 35.57 2.66
241 242 0.912486 CTAGGTGGCTAGGGCAAACT 59.088 55.000 0.00 0.80 42.91 2.66
242 243 0.107165 CCTAGGTGGCTAGGGCAAAC 60.107 60.000 0.00 0.00 42.02 2.93
243 244 2.307153 CCTAGGTGGCTAGGGCAAA 58.693 57.895 0.00 0.00 42.02 3.68
244 245 4.066614 CCTAGGTGGCTAGGGCAA 57.933 61.111 0.00 0.00 42.02 4.52
248 249 1.345715 CCCAACCCTAGGTGGCTAGG 61.346 65.000 12.15 0.00 44.58 3.02
249 250 1.345715 CCCCAACCCTAGGTGGCTAG 61.346 65.000 12.15 0.62 35.34 3.42
250 251 1.307517 CCCCAACCCTAGGTGGCTA 60.308 63.158 12.15 0.00 35.34 3.93
251 252 2.614013 CCCCAACCCTAGGTGGCT 60.614 66.667 12.15 0.00 35.34 4.75
252 253 3.739613 CCCCCAACCCTAGGTGGC 61.740 72.222 12.15 0.00 35.34 5.01
253 254 2.126372 TCCCCCAACCCTAGGTGG 59.874 66.667 8.29 9.77 35.34 4.61
254 255 2.666098 CGTCCCCCAACCCTAGGTG 61.666 68.421 8.29 0.00 35.34 4.00
255 256 2.285144 CGTCCCCCAACCCTAGGT 60.285 66.667 8.29 0.00 37.65 3.08
256 257 1.202769 TTTCGTCCCCCAACCCTAGG 61.203 60.000 0.06 0.06 0.00 3.02
257 258 0.035725 GTTTCGTCCCCCAACCCTAG 60.036 60.000 0.00 0.00 0.00 3.02
258 259 1.491274 GGTTTCGTCCCCCAACCCTA 61.491 60.000 0.00 0.00 34.90 3.53
259 260 2.837326 GGTTTCGTCCCCCAACCCT 61.837 63.158 0.00 0.00 34.90 4.34
260 261 2.282674 GGTTTCGTCCCCCAACCC 60.283 66.667 0.00 0.00 34.90 4.11
261 262 1.602605 CTGGTTTCGTCCCCCAACC 60.603 63.158 0.00 0.00 40.49 3.77
262 263 0.605589 CTCTGGTTTCGTCCCCCAAC 60.606 60.000 0.00 0.00 0.00 3.77
263 264 1.758592 CTCTGGTTTCGTCCCCCAA 59.241 57.895 0.00 0.00 0.00 4.12
264 265 2.221299 CCTCTGGTTTCGTCCCCCA 61.221 63.158 0.00 0.00 0.00 4.96
265 266 1.486145 TTCCTCTGGTTTCGTCCCCC 61.486 60.000 0.00 0.00 0.00 5.40
266 267 0.036294 CTTCCTCTGGTTTCGTCCCC 60.036 60.000 0.00 0.00 0.00 4.81
267 268 0.685660 ACTTCCTCTGGTTTCGTCCC 59.314 55.000 0.00 0.00 0.00 4.46
268 269 1.343465 TGACTTCCTCTGGTTTCGTCC 59.657 52.381 0.00 0.00 0.00 4.79
269 270 2.405172 GTGACTTCCTCTGGTTTCGTC 58.595 52.381 0.00 0.00 0.00 4.20
270 271 1.269621 CGTGACTTCCTCTGGTTTCGT 60.270 52.381 0.00 0.00 0.00 3.85
271 272 1.419374 CGTGACTTCCTCTGGTTTCG 58.581 55.000 0.00 0.00 0.00 3.46
272 273 1.797025 CCGTGACTTCCTCTGGTTTC 58.203 55.000 0.00 0.00 0.00 2.78
273 274 0.250338 GCCGTGACTTCCTCTGGTTT 60.250 55.000 0.00 0.00 0.00 3.27
274 275 1.371558 GCCGTGACTTCCTCTGGTT 59.628 57.895 0.00 0.00 0.00 3.67
275 276 2.932234 CGCCGTGACTTCCTCTGGT 61.932 63.158 0.00 0.00 0.00 4.00
276 277 2.125912 CGCCGTGACTTCCTCTGG 60.126 66.667 0.00 0.00 0.00 3.86
277 278 2.771763 AAGCGCCGTGACTTCCTCTG 62.772 60.000 2.29 0.00 0.00 3.35
278 279 1.248785 TAAGCGCCGTGACTTCCTCT 61.249 55.000 2.29 0.00 0.00 3.69
279 280 0.802607 CTAAGCGCCGTGACTTCCTC 60.803 60.000 2.29 0.00 0.00 3.71
280 281 1.215647 CTAAGCGCCGTGACTTCCT 59.784 57.895 2.29 0.00 0.00 3.36
281 282 1.810030 CCTAAGCGCCGTGACTTCC 60.810 63.158 2.29 0.00 0.00 3.46
282 283 1.077089 GACCTAAGCGCCGTGACTTC 61.077 60.000 2.29 0.00 0.00 3.01
283 284 1.080025 GACCTAAGCGCCGTGACTT 60.080 57.895 2.29 0.00 0.00 3.01
284 285 2.214181 CTGACCTAAGCGCCGTGACT 62.214 60.000 2.29 0.00 0.00 3.41
285 286 1.805945 CTGACCTAAGCGCCGTGAC 60.806 63.158 2.29 0.00 0.00 3.67
286 287 2.571757 CTGACCTAAGCGCCGTGA 59.428 61.111 2.29 0.00 0.00 4.35
287 288 3.188786 GCTGACCTAAGCGCCGTG 61.189 66.667 2.29 0.00 32.56 4.94
288 289 4.452733 GGCTGACCTAAGCGCCGT 62.453 66.667 2.29 0.00 44.52 5.68
290 291 4.143333 TCGGCTGACCTAAGCGCC 62.143 66.667 2.29 0.00 44.52 6.53
291 292 2.001361 TAGTCGGCTGACCTAAGCGC 62.001 60.000 22.17 0.00 46.74 5.92
292 293 0.029567 CTAGTCGGCTGACCTAAGCG 59.970 60.000 22.17 0.98 46.74 4.68
293 294 1.335496 CTCTAGTCGGCTGACCTAAGC 59.665 57.143 22.17 0.00 46.74 3.09
294 295 1.335496 GCTCTAGTCGGCTGACCTAAG 59.665 57.143 22.17 16.36 46.74 2.18
295 296 1.390565 GCTCTAGTCGGCTGACCTAA 58.609 55.000 22.17 7.39 46.74 2.69
296 297 0.814410 CGCTCTAGTCGGCTGACCTA 60.814 60.000 22.17 12.32 46.74 3.08
297 298 2.115911 CGCTCTAGTCGGCTGACCT 61.116 63.158 22.17 11.83 46.74 3.85
298 299 2.409651 CGCTCTAGTCGGCTGACC 59.590 66.667 22.17 5.45 46.74 4.02
299 300 1.437772 TAGCGCTCTAGTCGGCTGAC 61.438 60.000 16.34 18.39 45.86 3.51
300 301 1.153229 TAGCGCTCTAGTCGGCTGA 60.153 57.895 16.34 0.00 36.97 4.26
301 302 1.281353 CTAGCGCTCTAGTCGGCTG 59.719 63.158 16.34 0.00 37.97 4.85
302 303 2.548295 GCTAGCGCTCTAGTCGGCT 61.548 63.158 16.34 0.00 43.30 5.52
303 304 2.050805 GCTAGCGCTCTAGTCGGC 60.051 66.667 16.34 4.49 43.30 5.54
304 305 1.220169 TACGCTAGCGCTCTAGTCGG 61.220 60.000 35.63 7.21 43.30 4.79
305 306 0.791422 ATACGCTAGCGCTCTAGTCG 59.209 55.000 35.63 16.71 43.30 4.18
306 307 2.973419 AATACGCTAGCGCTCTAGTC 57.027 50.000 35.63 2.24 43.30 2.59
307 308 3.062369 CGATAATACGCTAGCGCTCTAGT 59.938 47.826 35.63 21.77 43.30 2.57
308 309 3.306434 TCGATAATACGCTAGCGCTCTAG 59.694 47.826 35.63 20.40 44.03 2.43
309 310 3.061831 GTCGATAATACGCTAGCGCTCTA 59.938 47.826 35.63 23.08 44.19 2.43
310 311 2.074576 TCGATAATACGCTAGCGCTCT 58.925 47.619 35.63 21.72 44.19 4.09
311 312 2.167591 GTCGATAATACGCTAGCGCTC 58.832 52.381 35.63 21.70 44.19 5.03
312 313 1.534163 TGTCGATAATACGCTAGCGCT 59.466 47.619 35.63 24.05 44.19 5.92
313 314 1.959747 TGTCGATAATACGCTAGCGC 58.040 50.000 35.63 17.72 44.19 5.92
314 315 5.496330 AAAATGTCGATAATACGCTAGCG 57.504 39.130 34.27 34.27 46.03 4.26
315 316 7.114529 ACTGTAAAATGTCGATAATACGCTAGC 59.885 37.037 4.06 4.06 0.00 3.42
316 317 8.503486 ACTGTAAAATGTCGATAATACGCTAG 57.497 34.615 0.00 0.00 0.00 3.42
317 318 9.949174 TTACTGTAAAATGTCGATAATACGCTA 57.051 29.630 0.00 0.00 0.00 4.26
318 319 8.861033 TTACTGTAAAATGTCGATAATACGCT 57.139 30.769 0.00 0.00 0.00 5.07
319 320 8.749499 ACTTACTGTAAAATGTCGATAATACGC 58.251 33.333 1.46 0.00 0.00 4.42
326 327 9.355215 CTCTGTAACTTACTGTAAAATGTCGAT 57.645 33.333 1.46 0.00 0.00 3.59
327 328 8.570488 TCTCTGTAACTTACTGTAAAATGTCGA 58.430 33.333 1.46 0.00 0.00 4.20
328 329 8.738199 TCTCTGTAACTTACTGTAAAATGTCG 57.262 34.615 1.46 0.00 0.00 4.35
330 331 9.998106 ACATCTCTGTAACTTACTGTAAAATGT 57.002 29.630 1.46 6.47 32.49 2.71
336 337 8.954350 GGAAGTACATCTCTGTAACTTACTGTA 58.046 37.037 0.00 0.00 39.51 2.74
337 338 7.670559 AGGAAGTACATCTCTGTAACTTACTGT 59.329 37.037 0.00 0.00 37.98 3.55
338 339 8.057536 AGGAAGTACATCTCTGTAACTTACTG 57.942 38.462 0.00 0.58 37.98 2.74
339 340 8.653036 AAGGAAGTACATCTCTGTAACTTACT 57.347 34.615 0.00 0.00 39.37 2.24
340 341 9.141400 CAAAGGAAGTACATCTCTGTAACTTAC 57.859 37.037 0.00 0.00 39.51 2.34
341 342 8.867097 ACAAAGGAAGTACATCTCTGTAACTTA 58.133 33.333 0.00 0.00 39.51 2.24
342 343 7.736893 ACAAAGGAAGTACATCTCTGTAACTT 58.263 34.615 0.00 0.00 39.51 2.66
343 344 7.304497 ACAAAGGAAGTACATCTCTGTAACT 57.696 36.000 0.00 0.00 39.51 2.24
344 345 9.485206 TTTACAAAGGAAGTACATCTCTGTAAC 57.515 33.333 14.18 0.00 39.51 2.50
345 346 9.485206 GTTTACAAAGGAAGTACATCTCTGTAA 57.515 33.333 12.15 12.15 39.51 2.41
346 347 8.867097 AGTTTACAAAGGAAGTACATCTCTGTA 58.133 33.333 0.00 0.19 36.79 2.74
347 348 7.736893 AGTTTACAAAGGAAGTACATCTCTGT 58.263 34.615 0.00 1.11 39.49 3.41
348 349 9.877178 ATAGTTTACAAAGGAAGTACATCTCTG 57.123 33.333 0.00 0.00 0.00 3.35
349 350 9.877178 CATAGTTTACAAAGGAAGTACATCTCT 57.123 33.333 0.00 0.00 0.00 3.10
350 351 9.871238 TCATAGTTTACAAAGGAAGTACATCTC 57.129 33.333 0.00 0.00 0.00 2.75
359 360 8.662141 GCGTTTAGATCATAGTTTACAAAGGAA 58.338 33.333 0.00 0.00 0.00 3.36
360 361 8.038944 AGCGTTTAGATCATAGTTTACAAAGGA 58.961 33.333 0.00 0.00 0.00 3.36
361 362 8.197988 AGCGTTTAGATCATAGTTTACAAAGG 57.802 34.615 0.00 0.00 0.00 3.11
381 382 8.985805 CCCTCGATAAACTAATATAAAAGCGTT 58.014 33.333 0.00 0.00 0.00 4.84
382 383 8.362639 TCCCTCGATAAACTAATATAAAAGCGT 58.637 33.333 0.00 0.00 0.00 5.07
383 384 8.752766 TCCCTCGATAAACTAATATAAAAGCG 57.247 34.615 0.00 0.00 0.00 4.68
384 385 9.708092 ACTCCCTCGATAAACTAATATAAAAGC 57.292 33.333 0.00 0.00 0.00 3.51
396 397 9.543783 AGACAAAATATTACTCCCTCGATAAAC 57.456 33.333 0.00 0.00 0.00 2.01
401 402 8.707796 AGATAGACAAAATATTACTCCCTCGA 57.292 34.615 0.00 0.00 0.00 4.04
402 403 8.798402 AGAGATAGACAAAATATTACTCCCTCG 58.202 37.037 0.00 0.00 0.00 4.63
422 423 5.178797 GGCAGAGTTTTTGCACTAGAGATA 58.821 41.667 0.00 0.00 43.28 1.98
439 440 1.003545 CTGACAACAAACACGGCAGAG 60.004 52.381 0.00 0.00 0.00 3.35
445 446 6.568601 CGTACTTTTATCTGACAACAAACACG 59.431 38.462 0.00 0.00 0.00 4.49
518 521 3.676093 GGTCGAGAATTCCTTGGTTCTT 58.324 45.455 0.65 0.00 34.97 2.52
524 527 2.941453 TCTCGGTCGAGAATTCCTTG 57.059 50.000 19.09 0.00 46.89 3.61
533 536 6.697455 TCTGATTTTGATAATTCTCGGTCGAG 59.303 38.462 13.56 13.56 43.21 4.04
534 537 6.569780 TCTGATTTTGATAATTCTCGGTCGA 58.430 36.000 0.00 0.00 0.00 4.20
535 538 6.828502 TCTGATTTTGATAATTCTCGGTCG 57.171 37.500 0.00 0.00 0.00 4.79
536 539 9.840427 TTTTTCTGATTTTGATAATTCTCGGTC 57.160 29.630 0.00 0.00 0.00 4.79
559 569 5.782845 TGGGCCAAGTGGAGTAATTTATTTT 59.217 36.000 2.13 0.00 37.39 1.82
563 573 4.601406 ATGGGCCAAGTGGAGTAATTTA 57.399 40.909 11.89 0.00 37.39 1.40
564 574 2.990740 TGGGCCAAGTGGAGTAATTT 57.009 45.000 2.13 0.00 37.39 1.82
610 620 7.498070 GCACTCAGCAAAATTAATTACAGAC 57.502 36.000 0.01 0.00 44.79 3.51
627 637 3.730761 GGGCGTGCTTGCACTCAG 61.731 66.667 21.17 9.00 34.69 3.35
664 679 1.664151 CGTGGCGATTTAAGGAACTCC 59.336 52.381 0.00 0.00 38.49 3.85
808 824 3.391506 TGATATGGACTCAATCGGCAG 57.608 47.619 0.00 0.00 0.00 4.85
928 953 5.655090 TGAATCATGGATGAAACAGAAGCAT 59.345 36.000 0.00 0.00 40.69 3.79
993 1045 1.672356 GCCGTGCTCCATCACTTGT 60.672 57.895 0.00 0.00 34.92 3.16
994 1046 2.743752 CGCCGTGCTCCATCACTTG 61.744 63.158 0.00 0.00 34.92 3.16
1270 1322 4.771356 CAGCGCTGCATGCACACC 62.771 66.667 26.68 7.45 43.06 4.16
1353 1405 2.282462 GTGGCCCTGTTGGTCCTG 60.282 66.667 0.00 0.00 38.27 3.86
1516 1568 2.034879 CGTGGAGCTTGGCGTTGAT 61.035 57.895 0.00 0.00 0.00 2.57
1612 1664 5.009911 TCACAAGCAAAAGCAAGATACATGT 59.990 36.000 2.69 2.69 0.00 3.21
1613 1665 5.463286 TCACAAGCAAAAGCAAGATACATG 58.537 37.500 0.00 0.00 0.00 3.21
1614 1666 5.710513 TCACAAGCAAAAGCAAGATACAT 57.289 34.783 0.00 0.00 0.00 2.29
1615 1667 5.617529 CGATCACAAGCAAAAGCAAGATACA 60.618 40.000 0.00 0.00 0.00 2.29
1616 1668 4.790140 CGATCACAAGCAAAAGCAAGATAC 59.210 41.667 0.00 0.00 0.00 2.24
1617 1669 4.694982 TCGATCACAAGCAAAAGCAAGATA 59.305 37.500 0.00 0.00 0.00 1.98
1618 1670 3.503363 TCGATCACAAGCAAAAGCAAGAT 59.497 39.130 0.00 0.00 0.00 2.40
1619 1671 2.877786 TCGATCACAAGCAAAAGCAAGA 59.122 40.909 0.00 0.00 0.00 3.02
1620 1672 3.272439 TCGATCACAAGCAAAAGCAAG 57.728 42.857 0.00 0.00 0.00 4.01
1621 1673 3.252944 TGATCGATCACAAGCAAAAGCAA 59.747 39.130 23.99 0.00 0.00 3.91
1622 1674 2.813172 TGATCGATCACAAGCAAAAGCA 59.187 40.909 23.99 0.00 0.00 3.91
1623 1675 3.476295 TGATCGATCACAAGCAAAAGC 57.524 42.857 23.99 0.00 0.00 3.51
1624 1676 9.964253 GTATATATGATCGATCACAAGCAAAAG 57.036 33.333 29.49 0.00 40.03 2.27
1625 1677 9.710900 AGTATATATGATCGATCACAAGCAAAA 57.289 29.630 29.49 10.20 40.03 2.44
1626 1678 9.710900 AAGTATATATGATCGATCACAAGCAAA 57.289 29.630 29.49 11.66 40.03 3.68
1685 1737 1.072331 ACCCACTCGTTCTGCAAAGAT 59.928 47.619 0.00 0.00 0.00 2.40
1692 1744 1.069765 ACAGCACCCACTCGTTCTG 59.930 57.895 0.00 0.00 33.79 3.02
1733 1785 2.278661 GACACTACGCCGCCTAGC 60.279 66.667 0.00 0.00 0.00 3.42
1734 1786 2.024305 CGACACTACGCCGCCTAG 59.976 66.667 0.00 0.00 0.00 3.02
1795 1847 1.076350 AGGACCCTATCTCCTCCATCG 59.924 57.143 0.00 0.00 32.06 3.84
1997 2049 1.546589 TTGCCAACGGGGAGTACGAT 61.547 55.000 0.00 0.00 40.01 3.73
2000 2052 2.038837 GCTTGCCAACGGGGAGTAC 61.039 63.158 0.00 0.00 40.01 2.73
2156 2208 2.833582 CTCTCCCGCTCGCCCTTA 60.834 66.667 0.00 0.00 0.00 2.69
2322 2374 5.058128 CGGTATATGCGCTAATAATCGATCG 59.942 44.000 9.36 9.36 0.00 3.69
2341 2393 2.176889 ACAGTAGTCAAGCACCGGTAT 58.823 47.619 6.87 0.00 0.00 2.73
2352 2404 3.735820 CGCGGGCTTATTTACAGTAGTCA 60.736 47.826 0.00 0.00 0.00 3.41
2355 2407 3.050619 CTCGCGGGCTTATTTACAGTAG 58.949 50.000 6.13 0.00 0.00 2.57
2459 2515 8.303876 CCCAATACAATAATGCTAATTACACCC 58.696 37.037 0.00 0.00 31.07 4.61
2635 2691 8.524487 GCTAGCTACTCACCACATAGTTATATT 58.476 37.037 7.70 0.00 0.00 1.28
2664 2720 4.804665 GTCATGAGATCATCACACACTCAG 59.195 45.833 0.00 0.00 41.91 3.35
2665 2721 4.676196 CGTCATGAGATCATCACACACTCA 60.676 45.833 0.00 0.00 41.91 3.41
2666 2722 3.795639 CGTCATGAGATCATCACACACTC 59.204 47.826 0.00 0.00 41.91 3.51
2713 2769 3.667430 GCTAGCGGTGCTAACTACTATCG 60.667 52.174 0.00 0.00 40.82 2.92
2752 2808 1.735700 GCGCCACCCATTCTTTTAAGC 60.736 52.381 0.00 0.00 0.00 3.09
2832 2888 2.030457 CGGGATTAGATTTGCGTGTGAC 59.970 50.000 0.00 0.00 0.00 3.67
3022 3125 2.901042 GACTAAGGAGGTGCGGGG 59.099 66.667 0.00 0.00 0.00 5.73
3026 3129 0.461961 ATGCTCGACTAAGGAGGTGC 59.538 55.000 0.00 0.00 32.10 5.01
3054 3157 5.361571 TGGATCCACCATGATTTTGATTGAG 59.638 40.000 11.44 0.00 44.64 3.02
3097 3200 7.870509 AGATAATCATGCAACACACACTTAT 57.129 32.000 0.00 0.00 0.00 1.73
3098 3201 7.686438 AAGATAATCATGCAACACACACTTA 57.314 32.000 0.00 0.00 0.00 2.24
3099 3202 6.579666 AAGATAATCATGCAACACACACTT 57.420 33.333 0.00 0.00 0.00 3.16
3182 3361 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3183 3362 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3184 3363 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3185 3364 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3186 3365 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3187 3366 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3188 3367 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3189 3368 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3190 3369 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3191 3370 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3192 3371 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3193 3372 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3194 3373 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3195 3374 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3196 3375 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3197 3376 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
3198 3377 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
3199 3378 3.551863 CGCTCTCTCTCTCTCTCTCTCTC 60.552 56.522 0.00 0.00 0.00 3.20
3200 3379 2.363680 CGCTCTCTCTCTCTCTCTCTCT 59.636 54.545 0.00 0.00 0.00 3.10
3201 3380 2.748605 CGCTCTCTCTCTCTCTCTCTC 58.251 57.143 0.00 0.00 0.00 3.20
3230 3409 2.363711 CTGGCCATGGACATGCATGC 62.364 60.000 23.87 18.01 37.49 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.