Multiple sequence alignment - TraesCS2A01G337300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G337300 chr2A 100.000 5005 0 0 1 5005 570786811 570781807 0.000000e+00 9243.0
1 TraesCS2A01G337300 chr2B 92.726 3987 210 41 285 4240 491179998 491183935 0.000000e+00 5683.0
2 TraesCS2A01G337300 chr2B 90.102 293 16 7 1 289 491179393 491179676 7.920000e-98 368.0
3 TraesCS2A01G337300 chr2B 83.402 241 25 8 4375 4606 491184119 491184353 5.080000e-50 209.0
4 TraesCS2A01G337300 chr2B 93.750 48 3 0 2457 2504 491182206 491182253 6.950000e-09 73.1
5 TraesCS2A01G337300 chr2D 95.217 1338 42 5 1405 2737 419040271 419041591 0.000000e+00 2097.0
6 TraesCS2A01G337300 chr2D 93.499 1369 60 8 29 1391 419038760 419040105 0.000000e+00 2008.0
7 TraesCS2A01G337300 chr2D 92.741 1295 76 11 2951 4240 419041596 419042877 0.000000e+00 1855.0
8 TraesCS2A01G337300 chr2D 92.116 241 19 0 4765 5005 595277103 595276863 1.730000e-89 340.0
9 TraesCS2A01G337300 chr3A 84.130 586 76 12 1621 2194 32151800 32151220 7.320000e-153 551.0
10 TraesCS2A01G337300 chr3A 88.028 142 17 0 2328 2469 32151094 32150953 8.620000e-38 169.0
11 TraesCS2A01G337300 chr3D 83.788 586 79 11 1621 2194 23063560 23062979 4.410000e-150 542.0
12 TraesCS2A01G337300 chr3D 93.671 237 14 1 4769 5005 591376005 591376240 2.220000e-93 353.0
13 TraesCS2A01G337300 chr3D 86.620 142 19 0 2328 2469 23062854 23062713 1.870000e-34 158.0
14 TraesCS2A01G337300 chr3B 83.390 590 80 12 1620 2194 40245592 40245006 9.540000e-147 531.0
15 TraesCS2A01G337300 chr3B 86.331 139 19 0 2331 2469 40244877 40244739 8.680000e-33 152.0
16 TraesCS2A01G337300 chr4A 86.041 394 51 3 1648 2039 580908038 580907647 2.150000e-113 420.0
17 TraesCS2A01G337300 chr4A 92.116 241 17 1 4767 5005 596730992 596731232 6.210000e-89 339.0
18 TraesCS2A01G337300 chr4A 87.500 112 14 0 3614 3725 580906795 580906684 4.070000e-26 130.0
19 TraesCS2A01G337300 chr4D 85.787 394 52 3 1648 2039 21888296 21887905 1.000000e-111 414.0
20 TraesCS2A01G337300 chr4D 88.393 112 13 0 3614 3725 21887023 21886912 8.740000e-28 135.0
21 TraesCS2A01G337300 chr4B 85.859 396 48 8 1648 2039 32806104 32806495 1.000000e-111 414.0
22 TraesCS2A01G337300 chr4B 88.393 112 13 0 3614 3725 32807359 32807470 8.740000e-28 135.0
23 TraesCS2A01G337300 chr1A 92.531 241 16 1 4767 5005 585985388 585985628 1.330000e-90 344.0
24 TraesCS2A01G337300 chr6A 92.797 236 17 0 4770 5005 23359138 23358903 4.800000e-90 342.0
25 TraesCS2A01G337300 chr6A 92.469 239 18 0 4767 5005 301093921 301094159 4.800000e-90 342.0
26 TraesCS2A01G337300 chr5D 92.500 240 16 1 4768 5005 256271017 256270778 4.800000e-90 342.0
27 TraesCS2A01G337300 chr5D 90.837 251 20 2 4758 5005 445036266 445036516 2.890000e-87 333.0
28 TraesCS2A01G337300 chr5A 92.405 237 18 0 4769 5005 313885386 313885622 6.210000e-89 339.0
29 TraesCS2A01G337300 chr7B 82.727 110 19 0 2353 2462 292829136 292829245 1.150000e-16 99.0
30 TraesCS2A01G337300 chr7A 82.727 110 19 0 2353 2462 386357098 386356989 1.150000e-16 99.0
31 TraesCS2A01G337300 chr7D 81.818 110 20 0 2353 2462 356897476 356897585 5.340000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G337300 chr2A 570781807 570786811 5004 True 9243.000000 9243 100.0000 1 5005 1 chr2A.!!$R1 5004
1 TraesCS2A01G337300 chr2B 491179393 491184353 4960 False 1583.275000 5683 89.9950 1 4606 4 chr2B.!!$F1 4605
2 TraesCS2A01G337300 chr2D 419038760 419042877 4117 False 1986.666667 2097 93.8190 29 4240 3 chr2D.!!$F1 4211
3 TraesCS2A01G337300 chr3A 32150953 32151800 847 True 360.000000 551 86.0790 1621 2469 2 chr3A.!!$R1 848
4 TraesCS2A01G337300 chr3D 23062713 23063560 847 True 350.000000 542 85.2040 1621 2469 2 chr3D.!!$R1 848
5 TraesCS2A01G337300 chr3B 40244739 40245592 853 True 341.500000 531 84.8605 1620 2469 2 chr3B.!!$R1 849
6 TraesCS2A01G337300 chr4A 580906684 580908038 1354 True 275.000000 420 86.7705 1648 3725 2 chr4A.!!$R1 2077
7 TraesCS2A01G337300 chr4D 21886912 21888296 1384 True 274.500000 414 87.0900 1648 3725 2 chr4D.!!$R1 2077
8 TraesCS2A01G337300 chr4B 32806104 32807470 1366 False 274.500000 414 87.1260 1648 3725 2 chr4B.!!$F1 2077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 902 0.179070 GACGGAGAGGCCTTTCCATC 60.179 60.0 34.86 28.61 37.29 3.51 F
1172 1519 0.104671 CAAAGCCTGGGTTTGGTGTG 59.895 55.0 33.15 15.97 44.18 3.82 F
2765 3463 0.178981 ACTGCCACCTTCATTGTGCT 60.179 50.0 0.00 0.00 32.30 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 2040 0.539438 AACTGCTCGCCCCAAATCAA 60.539 50.000 0.0 0.0 0.00 2.57 R
2828 3526 1.144093 TGGTGAACCGACCCTCAAATT 59.856 47.619 0.0 0.0 39.43 1.82 R
4284 5047 0.039527 AAAACCCATTTCGTCAGCGC 60.040 50.000 0.0 0.0 38.14 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 2.683475 GTTACCCCTGCCAGGCAT 59.317 61.111 16.64 1.78 38.13 4.40
53 55 1.453928 GTTACCCCTGCCAGGCATC 60.454 63.158 16.64 0.00 38.13 3.91
113 117 6.070897 TGAACTGAATTTTCTGCGAATCAA 57.929 33.333 0.00 0.00 0.00 2.57
115 119 5.695851 ACTGAATTTTCTGCGAATCAAGT 57.304 34.783 0.00 0.00 0.00 3.16
158 162 1.414550 GGAGGGAGACAGCTAATCCAC 59.585 57.143 11.84 6.28 34.62 4.02
221 229 1.429423 CAGGCGGGCGAAGAAAATC 59.571 57.895 0.00 0.00 0.00 2.17
467 803 2.824041 CACCCGCCCAAATCTCCG 60.824 66.667 0.00 0.00 0.00 4.63
470 806 1.222387 CCCGCCCAAATCTCCGTTA 59.778 57.895 0.00 0.00 0.00 3.18
564 900 2.646175 CGACGGAGAGGCCTTTCCA 61.646 63.158 34.86 0.00 37.29 3.53
566 902 0.179070 GACGGAGAGGCCTTTCCATC 60.179 60.000 34.86 28.61 37.29 3.51
567 903 1.147153 CGGAGAGGCCTTTCCATCC 59.853 63.158 34.86 22.10 38.78 3.51
568 904 1.534203 GGAGAGGCCTTTCCATCCC 59.466 63.158 32.48 9.70 37.13 3.85
569 905 0.990818 GGAGAGGCCTTTCCATCCCT 60.991 60.000 32.48 11.68 37.13 4.20
900 1246 5.412594 CGTTTCCTCCTCAAATCAAATCTCA 59.587 40.000 0.00 0.00 0.00 3.27
942 1288 2.540361 CCTCCGATTATCGTCGTCGTTT 60.540 50.000 13.73 0.00 38.40 3.60
997 1343 3.917760 CTCCCGTCGCCCTGATCC 61.918 72.222 0.00 0.00 0.00 3.36
1037 1384 1.003839 TTGCGCTGAATTCTCGGGT 60.004 52.632 9.73 0.00 0.00 5.28
1046 1393 4.496507 GCTGAATTCTCGGGTTAAATCTGC 60.497 45.833 7.05 0.00 0.00 4.26
1057 1404 4.435121 GGGTTAAATCTGCTGTTTCGTACG 60.435 45.833 9.53 9.53 0.00 3.67
1085 1432 0.669318 ACCGTGCGTAGTGAATGGTG 60.669 55.000 0.00 0.00 31.90 4.17
1093 1440 5.349270 GTGCGTAGTGAATGGTGTTGTTATA 59.651 40.000 0.00 0.00 0.00 0.98
1172 1519 0.104671 CAAAGCCTGGGTTTGGTGTG 59.895 55.000 33.15 15.97 44.18 3.82
1186 1533 0.527385 GGTGTGTGTTTTGCATGCGT 60.527 50.000 14.09 0.00 0.00 5.24
1207 1554 5.170092 GCGTGAATTTCGTTACTTCGTTTTT 59.830 36.000 6.02 0.00 0.00 1.94
1219 1567 0.533308 TCGTTTTTCCCCCTCGTGTG 60.533 55.000 0.00 0.00 0.00 3.82
1334 1685 3.641648 CCTTGTTATTTGTGCCAGTGTG 58.358 45.455 0.00 0.00 0.00 3.82
1377 1728 1.203758 CCTGTTTTCGGTATTTGGGGC 59.796 52.381 0.00 0.00 0.00 5.80
1383 1734 2.112279 TCGGTATTTGGGGCCTATCT 57.888 50.000 0.84 0.00 0.00 1.98
1447 1950 2.627699 TCCTTGTGGAATTTTGTCTGGC 59.372 45.455 0.00 0.00 39.87 4.85
1553 2065 1.017387 GATTTGGGGCGAGCAGTTAG 58.983 55.000 0.00 0.00 0.00 2.34
2113 2676 6.409704 AGCTGAAGCAACTGTGATAAATAGA 58.590 36.000 4.90 0.00 45.16 1.98
2393 3039 2.769652 TTAGGCTTGGGCTGGCACTG 62.770 60.000 2.88 0.00 39.30 3.66
2527 3173 6.662616 CATGGTAGTTTTTCTGAGTCAGTTG 58.337 40.000 19.53 0.00 32.61 3.16
2528 3174 5.123227 TGGTAGTTTTTCTGAGTCAGTTGG 58.877 41.667 19.53 0.00 32.61 3.77
2529 3175 5.104693 TGGTAGTTTTTCTGAGTCAGTTGGA 60.105 40.000 19.53 0.00 32.61 3.53
2530 3176 5.820947 GGTAGTTTTTCTGAGTCAGTTGGAA 59.179 40.000 19.53 4.30 32.61 3.53
2531 3177 6.486993 GGTAGTTTTTCTGAGTCAGTTGGAAT 59.513 38.462 19.53 7.16 32.61 3.01
2532 3178 6.382869 AGTTTTTCTGAGTCAGTTGGAATG 57.617 37.500 19.53 0.00 32.61 2.67
2533 3179 5.888161 AGTTTTTCTGAGTCAGTTGGAATGT 59.112 36.000 19.53 0.00 32.61 2.71
2534 3180 6.038714 AGTTTTTCTGAGTCAGTTGGAATGTC 59.961 38.462 19.53 3.85 32.61 3.06
2535 3181 3.303881 TCTGAGTCAGTTGGAATGTCG 57.696 47.619 19.53 0.00 32.61 4.35
2544 3190 3.753272 CAGTTGGAATGTCGGATGTTCTT 59.247 43.478 5.64 0.00 0.00 2.52
2758 3456 4.941263 GTCATATTTACACTGCCACCTTCA 59.059 41.667 0.00 0.00 0.00 3.02
2765 3463 0.178981 ACTGCCACCTTCATTGTGCT 60.179 50.000 0.00 0.00 32.30 4.40
2766 3464 0.242825 CTGCCACCTTCATTGTGCTG 59.757 55.000 0.00 0.00 32.30 4.41
2767 3465 0.467844 TGCCACCTTCATTGTGCTGT 60.468 50.000 0.00 0.00 32.30 4.40
2768 3466 0.675633 GCCACCTTCATTGTGCTGTT 59.324 50.000 0.00 0.00 32.30 3.16
2777 3475 5.220453 CCTTCATTGTGCTGTTTGTTTTGAC 60.220 40.000 0.00 0.00 0.00 3.18
2787 3485 5.578727 GCTGTTTGTTTTGACCACACAATAA 59.421 36.000 0.00 0.00 0.00 1.40
2839 3537 6.039829 GGATACCAATGAGAAATTTGAGGGTC 59.960 42.308 0.00 0.00 0.00 4.46
2840 3538 3.758554 ACCAATGAGAAATTTGAGGGTCG 59.241 43.478 0.00 0.00 0.00 4.79
2843 3542 3.502123 TGAGAAATTTGAGGGTCGGTT 57.498 42.857 0.00 0.00 0.00 4.44
2865 3564 4.382291 TCACCATTGTGTAAGTACCACAC 58.618 43.478 17.38 17.38 45.25 3.82
2873 3572 9.221933 CATTGTGTAAGTACCACACCTTATTTA 57.778 33.333 20.03 3.20 44.58 1.40
2874 3573 9.796180 ATTGTGTAAGTACCACACCTTATTTAA 57.204 29.630 20.03 10.06 44.58 1.52
2913 3613 8.579850 AACAACTGGAGAAATAATGCAATCTA 57.420 30.769 0.00 0.00 0.00 1.98
2952 3652 8.217799 TGGACTAGTAAATTTGATATCCCCTTG 58.782 37.037 0.00 0.00 0.00 3.61
3019 3719 5.229887 CACACGGCAATTCATATTAGTTTGC 59.770 40.000 0.00 0.00 41.40 3.68
3022 3722 6.020440 CACGGCAATTCATATTAGTTTGCTTG 60.020 38.462 5.99 2.63 41.73 4.01
3041 3742 5.239306 TGCTTGTGGTCATTTGACTTTAGAG 59.761 40.000 10.32 4.62 44.20 2.43
3052 3755 4.640771 TGACTTTAGAGCCAATGGAACT 57.359 40.909 2.05 3.54 0.00 3.01
3053 3756 4.985538 TGACTTTAGAGCCAATGGAACTT 58.014 39.130 2.05 0.00 0.00 2.66
3078 3781 6.313519 TCCATAATCTTTAGCTGTGGTCTT 57.686 37.500 0.00 0.00 0.00 3.01
3166 3888 1.001378 GAAACATGTGGTCACTGGTGC 60.001 52.381 0.00 0.00 0.00 5.01
3394 4117 1.800805 AGTTCGTCATGAAGTGCCAG 58.199 50.000 8.54 0.00 38.83 4.85
3398 4121 2.143122 TCGTCATGAAGTGCCAGTTTC 58.857 47.619 8.54 0.00 0.00 2.78
3406 4129 6.599244 TCATGAAGTGCCAGTTTCCTTAATAG 59.401 38.462 0.00 0.00 0.00 1.73
3531 4255 9.912634 TTTGACTTTCATCTCCAATTGTATTTC 57.087 29.630 4.43 0.00 0.00 2.17
3605 4329 3.304257 GGCATCATGATGACGTTCCATTC 60.304 47.826 34.65 15.12 41.20 2.67
3611 4336 5.295045 TCATGATGACGTTCCATTCATTCTG 59.705 40.000 0.00 0.00 32.43 3.02
3752 4477 1.586578 GTATCGTCGATTTCGCAAGCA 59.413 47.619 13.91 0.00 39.60 3.91
3775 4501 6.307155 CACATCTTTTATCTTGTCGTGTTCC 58.693 40.000 0.00 0.00 0.00 3.62
3777 4503 6.369065 ACATCTTTTATCTTGTCGTGTTCCTC 59.631 38.462 0.00 0.00 0.00 3.71
3778 4504 5.849510 TCTTTTATCTTGTCGTGTTCCTCA 58.150 37.500 0.00 0.00 0.00 3.86
3787 4513 2.875933 GTCGTGTTCCTCAAAACCATCA 59.124 45.455 0.00 0.00 0.00 3.07
3802 4529 4.598036 ACCATCATCCTCCTTGAACAAT 57.402 40.909 0.00 0.00 0.00 2.71
3879 4606 0.038159 AGGCTCCAAAGAACGACTCG 60.038 55.000 0.00 0.00 0.00 4.18
3951 4679 4.450976 AGTGTTTGCTACTGTCAATGACA 58.549 39.130 15.88 15.88 40.50 3.58
3979 4708 2.361119 TGTGGTCTGGATATGTCGTAGC 59.639 50.000 0.00 0.00 0.00 3.58
3980 4709 1.961394 TGGTCTGGATATGTCGTAGCC 59.039 52.381 0.00 0.00 39.38 3.93
3997 4726 1.877443 AGCCGTGTTATGGTTGTTGTC 59.123 47.619 0.00 0.00 0.00 3.18
4017 4746 1.039785 GCAAGATTTGAGGCTCCCCC 61.040 60.000 12.86 0.00 0.00 5.40
4018 4747 0.749454 CAAGATTTGAGGCTCCCCCG 60.749 60.000 12.86 0.00 39.21 5.73
4033 4762 1.436195 CCCCGTATGTGATGTTGCCG 61.436 60.000 0.00 0.00 0.00 5.69
4044 4773 3.680786 GTTGCCGGGGAAGGTTGC 61.681 66.667 2.18 0.00 0.00 4.17
4045 4774 3.897122 TTGCCGGGGAAGGTTGCT 61.897 61.111 2.18 0.00 0.00 3.91
4137 4866 2.739671 GGTGGTGGCCGTTCGTAC 60.740 66.667 0.00 0.00 0.00 3.67
4179 4909 2.738964 GCTTCTTATCGTGAGTGGTCCC 60.739 54.545 0.00 0.00 0.00 4.46
4185 4915 3.986006 GTGAGTGGTCCCGCGTCA 61.986 66.667 4.92 0.00 0.00 4.35
4192 4922 2.338984 GTCCCGCGTCAGTGTCTT 59.661 61.111 4.92 0.00 0.00 3.01
4207 4938 1.939934 TGTCTTGCCTGTTCTGTTTCG 59.060 47.619 0.00 0.00 0.00 3.46
4220 4951 3.611970 TCTGTTTCGGTTCTTTTGGTGA 58.388 40.909 0.00 0.00 0.00 4.02
4225 4956 5.808030 TGTTTCGGTTCTTTTGGTGATTTTC 59.192 36.000 0.00 0.00 0.00 2.29
4233 4964 0.478942 TTGGTGATTTTCCGTGGGGA 59.521 50.000 0.00 0.00 41.83 4.81
4240 4971 2.019807 TTTTCCGTGGGGAGTACTCT 57.980 50.000 21.88 0.00 44.98 3.24
4243 4974 0.629596 TCCGTGGGGAGTACTCTCAT 59.370 55.000 24.03 0.00 42.05 2.90
4245 4976 1.831736 CCGTGGGGAGTACTCTCATTT 59.168 52.381 24.03 0.00 42.05 2.32
4246 4977 2.418746 CCGTGGGGAGTACTCTCATTTG 60.419 54.545 24.03 10.28 42.05 2.32
4254 5017 4.455606 GAGTACTCTCATTTGGGGATTGG 58.544 47.826 15.91 0.00 40.18 3.16
4259 5022 1.381056 CATTTGGGGATTGGCCGGA 60.381 57.895 5.05 0.00 37.63 5.14
4278 5041 3.541632 GGATTGTTTGCTCCGGATAAGA 58.458 45.455 3.57 0.00 0.00 2.10
4279 5042 4.137543 GGATTGTTTGCTCCGGATAAGAT 58.862 43.478 3.57 0.00 0.00 2.40
4280 5043 4.580580 GGATTGTTTGCTCCGGATAAGATT 59.419 41.667 3.57 0.00 0.00 2.40
4281 5044 4.963276 TTGTTTGCTCCGGATAAGATTG 57.037 40.909 3.57 0.00 0.00 2.67
4282 5045 4.214986 TGTTTGCTCCGGATAAGATTGA 57.785 40.909 3.57 0.00 0.00 2.57
4283 5046 4.584874 TGTTTGCTCCGGATAAGATTGAA 58.415 39.130 3.57 0.00 0.00 2.69
4284 5047 4.635765 TGTTTGCTCCGGATAAGATTGAAG 59.364 41.667 3.57 0.00 0.00 3.02
4292 5055 2.219674 GGATAAGATTGAAGCGCTGACG 59.780 50.000 12.58 0.00 44.07 4.35
4298 5061 0.516877 TTGAAGCGCTGACGAAATGG 59.483 50.000 12.58 0.00 43.93 3.16
4300 5063 1.298859 GAAGCGCTGACGAAATGGGT 61.299 55.000 12.58 0.00 43.93 4.51
4301 5064 0.889186 AAGCGCTGACGAAATGGGTT 60.889 50.000 12.58 0.00 43.93 4.11
4329 5092 0.032130 TCGATAGACGCAGCCCATTC 59.968 55.000 0.00 0.00 42.67 2.67
4338 5101 0.837272 GCAGCCCATTCCTGTACCTA 59.163 55.000 0.00 0.00 32.93 3.08
4343 5106 4.580580 CAGCCCATTCCTGTACCTAAAATC 59.419 45.833 0.00 0.00 0.00 2.17
4346 5109 5.133221 CCCATTCCTGTACCTAAAATCCTG 58.867 45.833 0.00 0.00 0.00 3.86
4366 5129 0.320697 AAACAGACGTCCTAGCCCAC 59.679 55.000 13.01 0.00 0.00 4.61
4367 5130 0.830444 AACAGACGTCCTAGCCCACA 60.830 55.000 13.01 0.00 0.00 4.17
4371 5134 1.001760 ACGTCCTAGCCCACATCCT 59.998 57.895 0.00 0.00 0.00 3.24
4372 5135 0.617820 ACGTCCTAGCCCACATCCTT 60.618 55.000 0.00 0.00 0.00 3.36
4378 5168 1.000283 CTAGCCCACATCCTTCTAGCG 60.000 57.143 0.00 0.00 0.00 4.26
4382 5172 1.040646 CCACATCCTTCTAGCGGCTA 58.959 55.000 9.71 9.71 0.00 3.93
4449 5239 3.128589 TGATTTTCTGTAGGGATTTGCGC 59.871 43.478 0.00 0.00 0.00 6.09
4450 5240 1.083489 TTTCTGTAGGGATTTGCGCG 58.917 50.000 0.00 0.00 34.07 6.86
4455 5245 2.961893 TAGGGATTTGCGCGGGTGT 61.962 57.895 8.83 0.00 34.07 4.16
4456 5246 2.472414 TAGGGATTTGCGCGGGTGTT 62.472 55.000 8.83 0.00 34.07 3.32
4457 5247 2.126502 GGATTTGCGCGGGTGTTG 60.127 61.111 8.83 0.00 0.00 3.33
4464 5254 3.669344 CGCGGGTGTTGGCATGTT 61.669 61.111 0.00 0.00 0.00 2.71
4465 5255 2.049248 GCGGGTGTTGGCATGTTG 60.049 61.111 0.00 0.00 0.00 3.33
4467 5257 2.929903 CGGGTGTTGGCATGTTGGG 61.930 63.158 0.00 0.00 0.00 4.12
4548 5347 1.886313 CGGCGAATCAGCAGCAGAT 60.886 57.895 0.00 0.00 39.27 2.90
4549 5348 1.829349 CGGCGAATCAGCAGCAGATC 61.829 60.000 0.00 0.00 39.27 2.75
4550 5349 1.563655 GCGAATCAGCAGCAGATCG 59.436 57.895 0.00 7.77 37.05 3.69
4551 5350 0.873312 GCGAATCAGCAGCAGATCGA 60.873 55.000 17.59 0.00 37.05 3.59
4552 5351 1.780806 CGAATCAGCAGCAGATCGAT 58.219 50.000 0.00 0.00 0.00 3.59
4560 5359 4.432859 GCAGATCGATGCAGCTCA 57.567 55.556 0.54 0.00 45.77 4.26
4564 5363 2.279985 ATCGATGCAGCTCAGCCG 60.280 61.111 0.00 0.00 0.00 5.52
4578 5377 1.902508 TCAGCCGTGATTTCCTCTTCT 59.097 47.619 0.00 0.00 0.00 2.85
4580 5379 1.902508 AGCCGTGATTTCCTCTTCTGA 59.097 47.619 0.00 0.00 0.00 3.27
4581 5380 2.503356 AGCCGTGATTTCCTCTTCTGAT 59.497 45.455 0.00 0.00 0.00 2.90
4582 5381 2.869192 GCCGTGATTTCCTCTTCTGATC 59.131 50.000 0.00 0.00 0.00 2.92
4583 5382 3.679917 GCCGTGATTTCCTCTTCTGATCA 60.680 47.826 0.00 0.00 0.00 2.92
4584 5383 4.701765 CCGTGATTTCCTCTTCTGATCAT 58.298 43.478 0.00 0.00 0.00 2.45
4585 5384 5.121811 CCGTGATTTCCTCTTCTGATCATT 58.878 41.667 0.00 0.00 0.00 2.57
4586 5385 6.283694 CCGTGATTTCCTCTTCTGATCATTA 58.716 40.000 0.00 0.00 0.00 1.90
4587 5386 6.933521 CCGTGATTTCCTCTTCTGATCATTAT 59.066 38.462 0.00 0.00 0.00 1.28
4588 5387 7.443575 CCGTGATTTCCTCTTCTGATCATTATT 59.556 37.037 0.00 0.00 0.00 1.40
4589 5388 8.494347 CGTGATTTCCTCTTCTGATCATTATTC 58.506 37.037 0.00 0.00 0.00 1.75
4590 5389 9.558396 GTGATTTCCTCTTCTGATCATTATTCT 57.442 33.333 0.00 0.00 0.00 2.40
4641 5440 9.759473 ATCTTTATTCTTTTTGAGGATTGAGGA 57.241 29.630 0.00 0.00 0.00 3.71
4642 5441 9.759473 TCTTTATTCTTTTTGAGGATTGAGGAT 57.241 29.630 0.00 0.00 0.00 3.24
4647 5446 9.933240 ATTCTTTTTGAGGATTGAGGATATCTT 57.067 29.630 2.05 0.00 0.00 2.40
4648 5447 8.970859 TCTTTTTGAGGATTGAGGATATCTTC 57.029 34.615 7.87 7.87 0.00 2.87
4649 5448 8.776119 TCTTTTTGAGGATTGAGGATATCTTCT 58.224 33.333 15.15 0.00 31.50 2.85
4650 5449 8.743085 TTTTTGAGGATTGAGGATATCTTCTG 57.257 34.615 15.15 0.00 31.50 3.02
4651 5450 7.681259 TTTGAGGATTGAGGATATCTTCTGA 57.319 36.000 15.15 5.40 31.50 3.27
4652 5451 7.868792 TTGAGGATTGAGGATATCTTCTGAT 57.131 36.000 15.15 9.47 36.74 2.90
4653 5452 7.479352 TGAGGATTGAGGATATCTTCTGATC 57.521 40.000 15.15 15.91 34.32 2.92
4654 5453 7.015064 TGAGGATTGAGGATATCTTCTGATCA 58.985 38.462 21.61 14.10 34.32 2.92
4655 5454 7.679025 TGAGGATTGAGGATATCTTCTGATCAT 59.321 37.037 21.61 18.12 34.32 2.45
4656 5455 8.452138 AGGATTGAGGATATCTTCTGATCATT 57.548 34.615 21.61 12.97 34.32 2.57
4657 5456 8.892530 AGGATTGAGGATATCTTCTGATCATTT 58.107 33.333 21.61 11.47 34.32 2.32
4658 5457 9.165035 GGATTGAGGATATCTTCTGATCATTTC 57.835 37.037 21.61 9.70 34.32 2.17
4659 5458 9.947433 GATTGAGGATATCTTCTGATCATTTCT 57.053 33.333 15.15 0.00 34.32 2.52
4660 5459 9.727859 ATTGAGGATATCTTCTGATCATTTCTG 57.272 33.333 15.15 0.00 34.32 3.02
4661 5460 8.260099 TGAGGATATCTTCTGATCATTTCTGT 57.740 34.615 15.15 0.00 34.32 3.41
4662 5461 9.372189 TGAGGATATCTTCTGATCATTTCTGTA 57.628 33.333 15.15 0.00 34.32 2.74
4664 5463 9.995003 AGGATATCTTCTGATCATTTCTGTAAC 57.005 33.333 2.05 0.00 34.32 2.50
4665 5464 9.770097 GGATATCTTCTGATCATTTCTGTAACA 57.230 33.333 2.05 0.00 34.32 2.41
4667 5466 9.775854 ATATCTTCTGATCATTTCTGTAACAGG 57.224 33.333 0.00 0.00 34.32 4.00
4668 5467 6.409704 TCTTCTGATCATTTCTGTAACAGGG 58.590 40.000 0.00 0.00 31.51 4.45
4669 5468 5.102953 TCTGATCATTTCTGTAACAGGGG 57.897 43.478 0.00 0.00 31.51 4.79
4670 5469 4.782691 TCTGATCATTTCTGTAACAGGGGA 59.217 41.667 0.00 0.00 31.51 4.81
4671 5470 5.250543 TCTGATCATTTCTGTAACAGGGGAA 59.749 40.000 0.00 0.00 31.51 3.97
4672 5471 6.069440 TCTGATCATTTCTGTAACAGGGGAAT 60.069 38.462 0.00 0.00 31.51 3.01
4673 5472 6.122277 TGATCATTTCTGTAACAGGGGAATC 58.878 40.000 0.00 0.00 31.51 2.52
4674 5473 5.512942 TCATTTCTGTAACAGGGGAATCA 57.487 39.130 0.00 0.00 31.51 2.57
4675 5474 5.886609 TCATTTCTGTAACAGGGGAATCAA 58.113 37.500 0.00 0.00 31.51 2.57
4676 5475 6.493166 TCATTTCTGTAACAGGGGAATCAAT 58.507 36.000 0.00 0.00 31.51 2.57
4677 5476 6.603201 TCATTTCTGTAACAGGGGAATCAATC 59.397 38.462 0.00 0.00 31.51 2.67
4678 5477 5.512942 TTCTGTAACAGGGGAATCAATCA 57.487 39.130 0.00 0.00 31.51 2.57
4679 5478 5.512942 TCTGTAACAGGGGAATCAATCAA 57.487 39.130 0.00 0.00 31.51 2.57
4680 5479 5.886609 TCTGTAACAGGGGAATCAATCAAA 58.113 37.500 0.00 0.00 31.51 2.69
4681 5480 5.710099 TCTGTAACAGGGGAATCAATCAAAC 59.290 40.000 0.00 0.00 31.51 2.93
4682 5481 5.389520 TGTAACAGGGGAATCAATCAAACA 58.610 37.500 0.00 0.00 0.00 2.83
4683 5482 5.835819 TGTAACAGGGGAATCAATCAAACAA 59.164 36.000 0.00 0.00 0.00 2.83
4684 5483 5.885449 AACAGGGGAATCAATCAAACAAA 57.115 34.783 0.00 0.00 0.00 2.83
4685 5484 5.213891 ACAGGGGAATCAATCAAACAAAC 57.786 39.130 0.00 0.00 0.00 2.93
4686 5485 4.236935 CAGGGGAATCAATCAAACAAACG 58.763 43.478 0.00 0.00 0.00 3.60
4687 5486 4.022416 CAGGGGAATCAATCAAACAAACGA 60.022 41.667 0.00 0.00 0.00 3.85
4688 5487 4.586841 AGGGGAATCAATCAAACAAACGAA 59.413 37.500 0.00 0.00 0.00 3.85
4689 5488 5.245977 AGGGGAATCAATCAAACAAACGAAT 59.754 36.000 0.00 0.00 0.00 3.34
4690 5489 6.435904 AGGGGAATCAATCAAACAAACGAATA 59.564 34.615 0.00 0.00 0.00 1.75
4691 5490 6.530181 GGGGAATCAATCAAACAAACGAATAC 59.470 38.462 0.00 0.00 0.00 1.89
4692 5491 7.087639 GGGAATCAATCAAACAAACGAATACA 58.912 34.615 0.00 0.00 0.00 2.29
4693 5492 7.596995 GGGAATCAATCAAACAAACGAATACAA 59.403 33.333 0.00 0.00 0.00 2.41
4694 5493 8.424731 GGAATCAATCAAACAAACGAATACAAC 58.575 33.333 0.00 0.00 0.00 3.32
4695 5494 6.961358 TCAATCAAACAAACGAATACAACG 57.039 33.333 0.00 0.00 0.00 4.10
4696 5495 6.487960 TCAATCAAACAAACGAATACAACGT 58.512 32.000 0.00 0.00 45.89 3.99
4697 5496 6.412362 TCAATCAAACAAACGAATACAACGTG 59.588 34.615 0.00 0.00 43.16 4.49
4698 5497 5.466432 TCAAACAAACGAATACAACGTGA 57.534 34.783 0.00 0.00 43.16 4.35
4699 5498 5.866075 TCAAACAAACGAATACAACGTGAA 58.134 33.333 0.00 0.00 43.16 3.18
4700 5499 6.312487 TCAAACAAACGAATACAACGTGAAA 58.688 32.000 0.00 0.00 43.16 2.69
4701 5500 6.800408 TCAAACAAACGAATACAACGTGAAAA 59.200 30.769 0.00 0.00 43.16 2.29
4702 5501 7.325338 TCAAACAAACGAATACAACGTGAAAAA 59.675 29.630 0.00 0.00 43.16 1.94
4703 5502 6.543187 ACAAACGAATACAACGTGAAAAAC 57.457 33.333 0.00 0.00 43.16 2.43
4704 5503 6.316319 ACAAACGAATACAACGTGAAAAACT 58.684 32.000 0.00 0.00 43.16 2.66
4705 5504 6.466730 ACAAACGAATACAACGTGAAAAACTC 59.533 34.615 0.00 0.00 43.16 3.01
4706 5505 4.754332 ACGAATACAACGTGAAAAACTCG 58.246 39.130 0.00 0.00 42.37 4.18
4708 5507 5.458452 ACGAATACAACGTGAAAAACTCGTA 59.542 36.000 0.00 0.00 45.69 3.43
4709 5508 5.999361 CGAATACAACGTGAAAAACTCGTAG 59.001 40.000 0.00 0.00 45.69 3.51
4710 5509 3.580794 ACAACGTGAAAAACTCGTAGC 57.419 42.857 0.00 0.00 45.69 3.58
4711 5510 3.192466 ACAACGTGAAAAACTCGTAGCT 58.808 40.909 0.00 0.00 45.69 3.32
4712 5511 3.244579 ACAACGTGAAAAACTCGTAGCTC 59.755 43.478 0.00 0.00 45.69 4.09
4713 5512 3.366440 ACGTGAAAAACTCGTAGCTCT 57.634 42.857 0.00 0.00 44.83 4.09
4714 5513 3.306818 ACGTGAAAAACTCGTAGCTCTC 58.693 45.455 0.00 0.00 44.83 3.20
4715 5514 2.662156 CGTGAAAAACTCGTAGCTCTCC 59.338 50.000 0.00 0.00 0.00 3.71
4716 5515 3.612004 CGTGAAAAACTCGTAGCTCTCCT 60.612 47.826 0.00 0.00 0.00 3.69
4717 5516 4.308265 GTGAAAAACTCGTAGCTCTCCTT 58.692 43.478 0.00 0.00 0.00 3.36
4718 5517 4.150804 GTGAAAAACTCGTAGCTCTCCTTG 59.849 45.833 0.00 0.00 0.00 3.61
4719 5518 2.371910 AAACTCGTAGCTCTCCTTGC 57.628 50.000 0.00 0.00 0.00 4.01
4720 5519 1.551452 AACTCGTAGCTCTCCTTGCT 58.449 50.000 0.00 0.00 43.79 3.91
4721 5520 2.421751 ACTCGTAGCTCTCCTTGCTA 57.578 50.000 0.00 0.00 41.46 3.49
4722 5521 2.724454 ACTCGTAGCTCTCCTTGCTAA 58.276 47.619 0.00 0.00 43.50 3.09
4723 5522 3.090037 ACTCGTAGCTCTCCTTGCTAAA 58.910 45.455 0.00 0.00 43.50 1.85
4724 5523 3.119424 ACTCGTAGCTCTCCTTGCTAAAC 60.119 47.826 0.00 0.00 43.50 2.01
4725 5524 2.159421 TCGTAGCTCTCCTTGCTAAACG 60.159 50.000 0.00 0.00 43.50 3.60
4726 5525 2.415625 CGTAGCTCTCCTTGCTAAACGT 60.416 50.000 0.00 0.00 43.50 3.99
4727 5526 2.086054 AGCTCTCCTTGCTAAACGTG 57.914 50.000 0.00 0.00 39.21 4.49
4728 5527 1.618837 AGCTCTCCTTGCTAAACGTGA 59.381 47.619 0.00 0.00 39.21 4.35
4729 5528 2.037251 AGCTCTCCTTGCTAAACGTGAA 59.963 45.455 0.00 0.00 39.21 3.18
4730 5529 2.806244 GCTCTCCTTGCTAAACGTGAAA 59.194 45.455 0.00 0.00 0.00 2.69
4731 5530 3.250040 GCTCTCCTTGCTAAACGTGAAAA 59.750 43.478 0.00 0.00 0.00 2.29
4732 5531 4.773510 CTCTCCTTGCTAAACGTGAAAAC 58.226 43.478 0.00 0.00 0.00 2.43
4733 5532 4.448210 TCTCCTTGCTAAACGTGAAAACT 58.552 39.130 0.00 0.00 0.00 2.66
4734 5533 4.510340 TCTCCTTGCTAAACGTGAAAACTC 59.490 41.667 0.00 0.00 0.00 3.01
4735 5534 4.448210 TCCTTGCTAAACGTGAAAACTCT 58.552 39.130 0.00 0.00 0.00 3.24
4736 5535 4.879545 TCCTTGCTAAACGTGAAAACTCTT 59.120 37.500 0.00 0.00 0.00 2.85
4737 5536 5.355910 TCCTTGCTAAACGTGAAAACTCTTT 59.644 36.000 0.00 0.00 0.00 2.52
4738 5537 6.033966 CCTTGCTAAACGTGAAAACTCTTTT 58.966 36.000 0.00 0.00 35.12 2.27
4739 5538 6.530181 CCTTGCTAAACGTGAAAACTCTTTTT 59.470 34.615 0.00 0.00 37.65 1.94
4777 5576 3.320673 CGAAGGGAGTAAGAGCAACTT 57.679 47.619 2.10 2.10 42.04 2.66
4778 5577 3.254892 CGAAGGGAGTAAGAGCAACTTC 58.745 50.000 0.00 0.00 39.72 3.01
4779 5578 3.306088 CGAAGGGAGTAAGAGCAACTTCA 60.306 47.826 0.00 0.00 39.72 3.02
4780 5579 4.642429 GAAGGGAGTAAGAGCAACTTCAA 58.358 43.478 0.00 0.00 39.72 2.69
4781 5580 4.917906 AGGGAGTAAGAGCAACTTCAAT 57.082 40.909 0.00 0.00 39.72 2.57
4782 5581 4.583871 AGGGAGTAAGAGCAACTTCAATG 58.416 43.478 0.00 0.00 39.72 2.82
4783 5582 3.691609 GGGAGTAAGAGCAACTTCAATGG 59.308 47.826 0.00 0.00 39.72 3.16
4784 5583 3.691609 GGAGTAAGAGCAACTTCAATGGG 59.308 47.826 0.00 0.00 39.72 4.00
4785 5584 3.690460 AGTAAGAGCAACTTCAATGGGG 58.310 45.455 0.00 0.00 39.72 4.96
4786 5585 2.683211 AAGAGCAACTTCAATGGGGT 57.317 45.000 0.00 0.00 32.91 4.95
4787 5586 1.915141 AGAGCAACTTCAATGGGGTG 58.085 50.000 0.00 0.00 0.00 4.61
4788 5587 1.425066 AGAGCAACTTCAATGGGGTGA 59.575 47.619 0.00 0.00 0.00 4.02
4789 5588 2.042162 AGAGCAACTTCAATGGGGTGAT 59.958 45.455 0.00 0.00 0.00 3.06
4790 5589 2.827921 GAGCAACTTCAATGGGGTGATT 59.172 45.455 0.00 0.00 0.00 2.57
4791 5590 2.827921 AGCAACTTCAATGGGGTGATTC 59.172 45.455 0.00 0.00 0.00 2.52
4792 5591 2.562298 GCAACTTCAATGGGGTGATTCA 59.438 45.455 0.00 0.00 0.00 2.57
4793 5592 3.196254 GCAACTTCAATGGGGTGATTCAT 59.804 43.478 0.00 0.00 0.00 2.57
4794 5593 4.322953 GCAACTTCAATGGGGTGATTCATT 60.323 41.667 0.00 0.00 34.31 2.57
4795 5594 5.797051 CAACTTCAATGGGGTGATTCATTT 58.203 37.500 0.00 0.00 31.95 2.32
4796 5595 5.665916 ACTTCAATGGGGTGATTCATTTC 57.334 39.130 0.00 0.00 31.95 2.17
4797 5596 4.158394 ACTTCAATGGGGTGATTCATTTCG 59.842 41.667 0.00 0.00 31.95 3.46
4798 5597 3.696045 TCAATGGGGTGATTCATTTCGT 58.304 40.909 0.00 0.00 31.95 3.85
4799 5598 3.694072 TCAATGGGGTGATTCATTTCGTC 59.306 43.478 0.00 0.00 31.95 4.20
4800 5599 2.122783 TGGGGTGATTCATTTCGTCC 57.877 50.000 0.00 0.00 0.00 4.79
4801 5600 1.014352 GGGGTGATTCATTTCGTCCG 58.986 55.000 0.00 0.00 0.00 4.79
4802 5601 0.377203 GGGTGATTCATTTCGTCCGC 59.623 55.000 0.00 0.00 0.00 5.54
4803 5602 0.026285 GGTGATTCATTTCGTCCGCG 59.974 55.000 0.00 0.00 39.92 6.46
4804 5603 0.026285 GTGATTCATTTCGTCCGCGG 59.974 55.000 22.12 22.12 38.89 6.46
4805 5604 1.011131 GATTCATTTCGTCCGCGGC 60.011 57.895 23.51 15.21 38.89 6.53
4806 5605 2.374877 GATTCATTTCGTCCGCGGCC 62.375 60.000 23.51 8.79 38.89 6.13
4819 5618 3.719144 CGGCCGTTCGTTTGGGTC 61.719 66.667 19.50 0.00 0.00 4.46
4820 5619 3.719144 GGCCGTTCGTTTGGGTCG 61.719 66.667 0.00 0.00 0.00 4.79
4821 5620 3.719144 GCCGTTCGTTTGGGTCGG 61.719 66.667 0.00 0.00 43.37 4.79
4822 5621 3.719144 CCGTTCGTTTGGGTCGGC 61.719 66.667 0.00 0.00 35.01 5.54
4823 5622 4.067016 CGTTCGTTTGGGTCGGCG 62.067 66.667 0.00 0.00 0.00 6.46
4824 5623 4.379143 GTTCGTTTGGGTCGGCGC 62.379 66.667 0.00 0.00 0.00 6.53
4833 5632 3.652000 GGTCGGCGCGGACAAAAA 61.652 61.111 38.05 8.89 38.70 1.94
4848 5647 2.727103 AAAAAGCTGCCCTAACGCA 58.273 47.368 0.00 0.00 37.19 5.24
4849 5648 0.313987 AAAAAGCTGCCCTAACGCAC 59.686 50.000 0.00 0.00 34.35 5.34
4850 5649 1.524008 AAAAGCTGCCCTAACGCACC 61.524 55.000 0.00 0.00 34.35 5.01
4851 5650 4.760047 AGCTGCCCTAACGCACCG 62.760 66.667 0.00 0.00 34.35 4.94
4852 5651 4.752879 GCTGCCCTAACGCACCGA 62.753 66.667 0.00 0.00 34.35 4.69
4853 5652 2.813908 CTGCCCTAACGCACCGAC 60.814 66.667 0.00 0.00 34.35 4.79
4854 5653 4.382320 TGCCCTAACGCACCGACC 62.382 66.667 0.00 0.00 32.62 4.79
4856 5655 3.697747 CCCTAACGCACCGACCCA 61.698 66.667 0.00 0.00 0.00 4.51
4857 5656 2.344500 CCTAACGCACCGACCCAA 59.656 61.111 0.00 0.00 0.00 4.12
4858 5657 1.301874 CCTAACGCACCGACCCAAA 60.302 57.895 0.00 0.00 0.00 3.28
4859 5658 1.571215 CCTAACGCACCGACCCAAAC 61.571 60.000 0.00 0.00 0.00 2.93
4860 5659 1.893168 CTAACGCACCGACCCAAACG 61.893 60.000 0.00 0.00 0.00 3.60
4867 5666 3.708734 CGACCCAAACGGACGTGC 61.709 66.667 0.00 0.00 43.65 5.34
4868 5667 3.708734 GACCCAAACGGACGTGCG 61.709 66.667 28.33 28.33 34.64 5.34
4869 5668 4.534141 ACCCAAACGGACGTGCGT 62.534 61.111 29.92 29.92 34.64 5.24
4870 5669 3.273834 CCCAAACGGACGTGCGTT 61.274 61.111 36.96 36.96 0.00 4.84
4871 5670 2.247267 CCAAACGGACGTGCGTTC 59.753 61.111 40.62 5.38 0.00 3.95
4876 5675 3.698463 CGGACGTGCGTTCGCTTT 61.698 61.111 22.12 2.51 40.42 3.51
4877 5676 2.170273 GGACGTGCGTTCGCTTTC 59.830 61.111 17.63 10.67 0.00 2.62
4878 5677 2.201885 GACGTGCGTTCGCTTTCG 60.202 61.111 17.63 18.82 0.00 3.46
4879 5678 2.924285 GACGTGCGTTCGCTTTCGT 61.924 57.895 23.65 23.65 36.83 3.85
4880 5679 2.201885 CGTGCGTTCGCTTTCGTC 60.202 61.111 17.63 2.12 36.96 4.20
4881 5680 2.170273 GTGCGTTCGCTTTCGTCC 59.830 61.111 17.63 0.00 36.96 4.79
4882 5681 3.399770 TGCGTTCGCTTTCGTCCG 61.400 61.111 17.63 0.00 36.96 4.79
4883 5682 3.400590 GCGTTCGCTTTCGTCCGT 61.401 61.111 9.99 0.00 36.96 4.69
4884 5683 2.761354 CGTTCGCTTTCGTCCGTC 59.239 61.111 0.00 0.00 36.96 4.79
4885 5684 1.728426 CGTTCGCTTTCGTCCGTCT 60.728 57.895 0.00 0.00 36.96 4.18
4886 5685 1.773496 GTTCGCTTTCGTCCGTCTG 59.227 57.895 0.00 0.00 36.96 3.51
4887 5686 2.019951 TTCGCTTTCGTCCGTCTGC 61.020 57.895 0.00 0.00 36.96 4.26
4888 5687 3.479269 CGCTTTCGTCCGTCTGCC 61.479 66.667 0.00 0.00 0.00 4.85
4889 5688 3.479269 GCTTTCGTCCGTCTGCCG 61.479 66.667 0.00 0.00 0.00 5.69
4890 5689 2.257371 CTTTCGTCCGTCTGCCGA 59.743 61.111 0.00 0.00 39.56 5.54
4891 5690 2.049802 TTTCGTCCGTCTGCCGAC 60.050 61.111 0.00 0.00 39.56 4.79
4892 5691 3.562779 TTTCGTCCGTCTGCCGACC 62.563 63.158 2.40 0.00 39.56 4.79
4895 5694 3.771160 GTCCGTCTGCCGACCCAT 61.771 66.667 2.40 0.00 39.56 4.00
4896 5695 3.000819 TCCGTCTGCCGACCCATT 61.001 61.111 2.40 0.00 39.56 3.16
4897 5696 2.511600 CCGTCTGCCGACCCATTC 60.512 66.667 2.40 0.00 39.56 2.67
4898 5697 2.511600 CGTCTGCCGACCCATTCC 60.512 66.667 2.40 0.00 39.56 3.01
4899 5698 2.124695 GTCTGCCGACCCATTCCC 60.125 66.667 0.00 0.00 33.98 3.97
4900 5699 3.781307 TCTGCCGACCCATTCCCG 61.781 66.667 0.00 0.00 0.00 5.14
4901 5700 4.856801 CTGCCGACCCATTCCCGG 62.857 72.222 0.00 0.00 45.51 5.73
4906 5705 3.820843 GACCCATTCCCGGCCCAT 61.821 66.667 0.00 0.00 0.00 4.00
4907 5706 3.355344 ACCCATTCCCGGCCCATT 61.355 61.111 0.00 0.00 0.00 3.16
4908 5707 2.042025 CCCATTCCCGGCCCATTT 60.042 61.111 0.00 0.00 0.00 2.32
4909 5708 1.688884 CCCATTCCCGGCCCATTTT 60.689 57.895 0.00 0.00 0.00 1.82
4910 5709 1.271127 CCCATTCCCGGCCCATTTTT 61.271 55.000 0.00 0.00 0.00 1.94
4911 5710 0.107752 CCATTCCCGGCCCATTTTTG 60.108 55.000 0.00 0.00 0.00 2.44
4912 5711 0.901124 CATTCCCGGCCCATTTTTGA 59.099 50.000 0.00 0.00 0.00 2.69
4913 5712 1.134729 CATTCCCGGCCCATTTTTGAG 60.135 52.381 0.00 0.00 0.00 3.02
4914 5713 1.540435 TTCCCGGCCCATTTTTGAGC 61.540 55.000 0.00 0.00 0.00 4.26
4915 5714 2.578664 CCGGCCCATTTTTGAGCC 59.421 61.111 0.00 0.00 42.18 4.70
4916 5715 1.984026 CCGGCCCATTTTTGAGCCT 60.984 57.895 0.00 0.00 43.48 4.58
4917 5716 1.216178 CGGCCCATTTTTGAGCCTG 59.784 57.895 0.00 0.00 43.48 4.85
4918 5717 1.250154 CGGCCCATTTTTGAGCCTGA 61.250 55.000 0.00 0.00 43.48 3.86
4919 5718 1.197812 GGCCCATTTTTGAGCCTGAT 58.802 50.000 0.00 0.00 42.34 2.90
4920 5719 1.556451 GGCCCATTTTTGAGCCTGATT 59.444 47.619 0.00 0.00 42.34 2.57
4921 5720 2.026915 GGCCCATTTTTGAGCCTGATTT 60.027 45.455 0.00 0.00 42.34 2.17
4922 5721 3.004862 GCCCATTTTTGAGCCTGATTTG 58.995 45.455 0.00 0.00 0.00 2.32
4923 5722 3.004862 CCCATTTTTGAGCCTGATTTGC 58.995 45.455 0.00 0.00 0.00 3.68
4924 5723 2.669434 CCATTTTTGAGCCTGATTTGCG 59.331 45.455 0.00 0.00 0.00 4.85
4925 5724 3.319755 CATTTTTGAGCCTGATTTGCGT 58.680 40.909 0.00 0.00 0.00 5.24
4926 5725 3.451141 TTTTTGAGCCTGATTTGCGTT 57.549 38.095 0.00 0.00 0.00 4.84
4927 5726 2.420628 TTTGAGCCTGATTTGCGTTG 57.579 45.000 0.00 0.00 0.00 4.10
4928 5727 0.597568 TTGAGCCTGATTTGCGTTGG 59.402 50.000 0.00 0.00 0.00 3.77
4929 5728 1.153958 GAGCCTGATTTGCGTTGGC 60.154 57.895 0.00 0.00 43.52 4.52
4930 5729 2.504681 GCCTGATTTGCGTTGGCG 60.505 61.111 0.00 0.00 44.10 5.69
4940 5739 4.368808 CGTTGGCGCGGACACAAG 62.369 66.667 8.83 0.00 0.00 3.16
4941 5740 2.970324 GTTGGCGCGGACACAAGA 60.970 61.111 8.83 0.00 0.00 3.02
4942 5741 2.970324 TTGGCGCGGACACAAGAC 60.970 61.111 8.83 0.00 0.00 3.01
4946 5745 2.126071 CGCGGACACAAGACGGAT 60.126 61.111 0.00 0.00 0.00 4.18
4947 5746 2.444624 CGCGGACACAAGACGGATG 61.445 63.158 0.00 0.00 0.00 3.51
4948 5747 2.740714 GCGGACACAAGACGGATGC 61.741 63.158 0.00 0.00 0.00 3.91
4949 5748 2.444624 CGGACACAAGACGGATGCG 61.445 63.158 4.58 4.58 0.00 4.73
4950 5749 2.740714 GGACACAAGACGGATGCGC 61.741 63.158 6.51 0.00 0.00 6.09
4951 5750 3.071459 GACACAAGACGGATGCGCG 62.071 63.158 6.51 0.00 0.00 6.86
4952 5751 4.505217 CACAAGACGGATGCGCGC 62.505 66.667 27.26 27.26 0.00 6.86
4968 5767 4.459089 GCGCTCGCCCTCTTTCCT 62.459 66.667 0.00 0.00 34.56 3.36
4969 5768 2.202810 CGCTCGCCCTCTTTCCTC 60.203 66.667 0.00 0.00 0.00 3.71
4970 5769 2.982130 GCTCGCCCTCTTTCCTCA 59.018 61.111 0.00 0.00 0.00 3.86
4971 5770 1.448717 GCTCGCCCTCTTTCCTCAC 60.449 63.158 0.00 0.00 0.00 3.51
4972 5771 1.219393 CTCGCCCTCTTTCCTCACC 59.781 63.158 0.00 0.00 0.00 4.02
4973 5772 2.125512 CGCCCTCTTTCCTCACCG 60.126 66.667 0.00 0.00 0.00 4.94
4974 5773 2.269241 GCCCTCTTTCCTCACCGG 59.731 66.667 0.00 0.00 0.00 5.28
4975 5774 2.990479 CCCTCTTTCCTCACCGGG 59.010 66.667 6.32 0.00 0.00 5.73
4976 5775 2.269241 CCTCTTTCCTCACCGGGC 59.731 66.667 6.32 0.00 0.00 6.13
4977 5776 2.269241 CTCTTTCCTCACCGGGCC 59.731 66.667 6.32 0.00 0.00 5.80
4978 5777 3.327404 TCTTTCCTCACCGGGCCC 61.327 66.667 13.57 13.57 0.00 5.80
4979 5778 4.778143 CTTTCCTCACCGGGCCCG 62.778 72.222 37.99 37.99 39.44 6.13
4996 5795 2.672996 GCTGGTCGGTGGCACATT 60.673 61.111 20.82 0.00 44.52 2.71
4997 5796 2.981560 GCTGGTCGGTGGCACATTG 61.982 63.158 20.82 8.68 44.52 2.82
4998 5797 2.282110 TGGTCGGTGGCACATTGG 60.282 61.111 20.82 5.45 44.52 3.16
4999 5798 2.033448 GGTCGGTGGCACATTGGA 59.967 61.111 20.82 7.84 44.52 3.53
5000 5799 1.378514 GGTCGGTGGCACATTGGAT 60.379 57.895 20.82 0.00 44.52 3.41
5001 5800 0.965363 GGTCGGTGGCACATTGGATT 60.965 55.000 20.82 0.00 44.52 3.01
5002 5801 0.451783 GTCGGTGGCACATTGGATTC 59.548 55.000 20.82 0.00 44.52 2.52
5003 5802 0.037447 TCGGTGGCACATTGGATTCA 59.963 50.000 20.82 0.00 44.52 2.57
5004 5803 0.171007 CGGTGGCACATTGGATTCAC 59.829 55.000 20.82 0.00 44.52 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 2.360483 GAGAGCGTCAGATCCAATGAGA 59.640 50.000 0.00 0.00 32.16 3.27
53 55 2.361757 AGAGAGCGTCAGATCCAATGAG 59.638 50.000 0.00 0.00 32.16 2.90
113 117 0.098376 GACGCGGACGAAGACATACT 59.902 55.000 12.47 0.00 43.93 2.12
115 119 1.061411 CGACGCGGACGAAGACATA 59.939 57.895 19.79 0.00 43.93 2.29
221 229 1.402968 CCACCTGCTCCATTCAATTCG 59.597 52.381 0.00 0.00 0.00 3.34
341 676 3.983562 CGTGGTGTGCGTGTGACG 61.984 66.667 0.00 0.00 45.88 4.35
342 677 2.888534 ACGTGGTGTGCGTGTGAC 60.889 61.111 0.00 0.00 41.33 3.67
467 803 0.025898 GGAGATTTCGGCGCGTTAAC 59.974 55.000 8.43 0.00 0.00 2.01
470 806 1.810030 GAGGAGATTTCGGCGCGTT 60.810 57.895 8.43 0.00 0.00 4.84
549 885 1.147153 GGATGGAAAGGCCTCTCCG 59.853 63.158 20.49 0.00 40.77 4.63
675 1011 3.599285 TTGCGATGGGGACGACCAC 62.599 63.158 6.20 1.86 44.72 4.16
676 1012 2.884980 TTTGCGATGGGGACGACCA 61.885 57.895 6.20 3.41 46.24 4.02
774 1110 4.666105 GGGGGCCTAGAAAAGCAG 57.334 61.111 0.84 0.00 0.00 4.24
900 1246 3.344137 AATTGAGGGATGCGGCGGT 62.344 57.895 9.78 0.00 0.00 5.68
942 1288 2.950309 GGTACCAGCGAAGATCTAGTCA 59.050 50.000 7.15 0.00 0.00 3.41
997 1343 3.642778 ATCCCGTCAGAACACCGCG 62.643 63.158 0.00 0.00 0.00 6.46
1037 1384 4.558178 TCCGTACGAAACAGCAGATTTAA 58.442 39.130 18.76 0.00 0.00 1.52
1046 1393 4.433283 CGGTAACAATTCCGTACGAAACAG 60.433 45.833 18.76 1.03 41.58 3.16
1057 1404 2.093152 CACTACGCACGGTAACAATTCC 59.907 50.000 0.00 0.00 0.00 3.01
1172 1519 3.658852 CGAAATTCACGCATGCAAAACAC 60.659 43.478 19.57 0.89 0.00 3.32
1186 1533 6.200808 GGGAAAAACGAAGTAACGAAATTCA 58.799 36.000 0.00 0.00 45.00 2.57
1207 1554 3.269592 AATATATCCACACGAGGGGGA 57.730 47.619 0.00 2.97 34.70 4.81
1219 1567 7.040617 TCGGATCTAATCTGCCGTAATATATCC 60.041 40.741 0.00 0.00 43.92 2.59
1303 1654 5.451039 CACAAATAACAAGGCCAATTTTGC 58.549 37.500 5.01 0.00 0.00 3.68
1334 1685 8.863049 CAGGTTTGATTTTGAATTGTATACTGC 58.137 33.333 4.17 0.00 0.00 4.40
1377 1728 6.054295 AGCAGCTGTAATTCTTTCAGATAGG 58.946 40.000 16.64 0.00 0.00 2.57
1407 1910 7.437862 CACAAGGAAAGCACTATTAAGCAAAAA 59.562 33.333 0.00 0.00 0.00 1.94
1445 1948 1.984990 CGCACAAATACACATGTTGCC 59.015 47.619 10.07 0.00 0.00 4.52
1447 1950 2.979151 CCACGCACAAATACACATGTTG 59.021 45.455 0.00 0.00 0.00 3.33
1532 2040 0.539438 AACTGCTCGCCCCAAATCAA 60.539 50.000 0.00 0.00 0.00 2.57
1553 2065 5.640732 TCAAAGAGAAAAACAACAGTCAGC 58.359 37.500 0.00 0.00 0.00 4.26
1557 2069 6.681368 GCAGGATCAAAGAGAAAAACAACAGT 60.681 38.462 0.00 0.00 0.00 3.55
1558 2070 5.689068 GCAGGATCAAAGAGAAAAACAACAG 59.311 40.000 0.00 0.00 0.00 3.16
1559 2071 5.126869 TGCAGGATCAAAGAGAAAAACAACA 59.873 36.000 0.00 0.00 0.00 3.33
1560 2072 5.591099 TGCAGGATCAAAGAGAAAAACAAC 58.409 37.500 0.00 0.00 0.00 3.32
1606 2118 5.848036 CGTCATCTTCACAGTTCACAATTTC 59.152 40.000 0.00 0.00 0.00 2.17
1611 2123 2.754472 CCGTCATCTTCACAGTTCACA 58.246 47.619 0.00 0.00 0.00 3.58
2077 2637 7.712205 ACAGTTGCTTCAGCTAAATGAAAAATT 59.288 29.630 14.20 0.00 38.66 1.82
2079 2639 6.476380 CACAGTTGCTTCAGCTAAATGAAAAA 59.524 34.615 14.20 0.00 38.66 1.94
2310 2956 8.177119 TGAAAGATTATACAGCAAACCAAACT 57.823 30.769 0.00 0.00 0.00 2.66
2393 3039 7.481642 TCTCATAATAGAACACCGAGAAGTTC 58.518 38.462 0.00 0.00 43.33 3.01
2507 3153 6.920569 TTCCAACTGACTCAGAAAAACTAC 57.079 37.500 13.25 0.00 35.18 2.73
2655 3352 2.134201 TCTGCATGTATTACGAGCCG 57.866 50.000 0.00 2.83 0.00 5.52
2758 3456 3.932089 GTGGTCAAAACAAACAGCACAAT 59.068 39.130 0.00 0.00 37.25 2.71
2767 3465 9.632807 GCTATATTATTGTGTGGTCAAAACAAA 57.367 29.630 5.10 0.00 37.36 2.83
2768 3466 8.797438 TGCTATATTATTGTGTGGTCAAAACAA 58.203 29.630 3.87 3.87 38.13 2.83
2820 3518 3.758554 ACCGACCCTCAAATTTCTCATTG 59.241 43.478 0.00 0.00 0.00 2.82
2828 3526 1.144093 TGGTGAACCGACCCTCAAATT 59.856 47.619 0.00 0.00 39.43 1.82
2888 3587 7.472334 AGATTGCATTATTTCTCCAGTTGTT 57.528 32.000 0.00 0.00 0.00 2.83
2952 3652 5.231357 GCAAAAACTGGCCGCTAAAATATAC 59.769 40.000 0.00 0.00 0.00 1.47
3019 3719 5.335191 GGCTCTAAAGTCAAATGACCACAAG 60.335 44.000 9.84 3.80 45.85 3.16
3022 3722 4.072131 TGGCTCTAAAGTCAAATGACCAC 58.928 43.478 9.84 0.00 45.85 4.16
3052 3755 7.175104 AGACCACAGCTAAAGATTATGGAAAA 58.825 34.615 2.99 0.00 0.00 2.29
3053 3756 6.721318 AGACCACAGCTAAAGATTATGGAAA 58.279 36.000 2.99 0.00 0.00 3.13
3078 3781 3.295093 TGCAAGGATTTTGTTGTCTCCA 58.705 40.909 0.00 0.00 0.00 3.86
3354 4077 1.266989 GTTGGCCAAGTTCTGCTACAC 59.733 52.381 21.21 0.00 0.00 2.90
3406 4129 8.031277 ACTCCATTTTGCATCAAAGAATCTAAC 58.969 33.333 0.00 0.00 34.72 2.34
3600 4324 2.543031 CGAATGCCTGCAGAATGAATGG 60.543 50.000 17.39 0.00 39.69 3.16
3605 4329 1.944709 TCATCGAATGCCTGCAGAATG 59.055 47.619 17.39 0.00 40.87 2.67
3611 4336 2.550101 GGCCTCATCGAATGCCTGC 61.550 63.158 0.00 0.00 40.77 4.85
3752 4477 6.231211 AGGAACACGACAAGATAAAAGATGT 58.769 36.000 0.00 0.00 0.00 3.06
3775 4501 4.592942 TCAAGGAGGATGATGGTTTTGAG 58.407 43.478 0.00 0.00 0.00 3.02
3777 4503 4.523943 TGTTCAAGGAGGATGATGGTTTTG 59.476 41.667 0.00 0.00 0.00 2.44
3778 4504 4.739793 TGTTCAAGGAGGATGATGGTTTT 58.260 39.130 0.00 0.00 0.00 2.43
3787 4513 4.514401 GGTTACGATTGTTCAAGGAGGAT 58.486 43.478 0.00 0.00 0.00 3.24
3879 4606 1.815840 GCTTTACTGCCCCTCGCTC 60.816 63.158 0.00 0.00 38.78 5.03
3922 4649 4.082190 TGACAGTAGCAAACACTAGCTAGG 60.082 45.833 24.35 15.22 43.39 3.02
3951 4679 4.539726 ACATATCCAGACCACATTGCAAT 58.460 39.130 5.99 5.99 0.00 3.56
3962 4690 1.607628 ACGGCTACGACATATCCAGAC 59.392 52.381 0.00 0.00 44.60 3.51
3970 4698 1.479323 ACCATAACACGGCTACGACAT 59.521 47.619 0.00 0.00 44.60 3.06
3979 4708 1.399215 GCGACAACAACCATAACACGG 60.399 52.381 0.00 0.00 0.00 4.94
3980 4709 1.261885 TGCGACAACAACCATAACACG 59.738 47.619 0.00 0.00 0.00 4.49
3997 4726 1.379642 GGGGAGCCTCAAATCTTGCG 61.380 60.000 0.00 0.00 0.00 4.85
4008 4737 1.074471 ATCACATACGGGGGAGCCT 60.074 57.895 0.00 0.00 0.00 4.58
4017 4746 1.436195 CCCCGGCAACATCACATACG 61.436 60.000 0.00 0.00 0.00 3.06
4018 4747 0.107410 TCCCCGGCAACATCACATAC 60.107 55.000 0.00 0.00 0.00 2.39
4033 4762 3.056328 GCGACAGCAACCTTCCCC 61.056 66.667 0.00 0.00 44.35 4.81
4112 4841 4.974721 GGCCACCACCACCACCAG 62.975 72.222 0.00 0.00 0.00 4.00
4137 4866 6.124088 AGCAATATTAAGGCAGAACGAAAG 57.876 37.500 0.00 0.00 0.00 2.62
4179 4909 2.356313 AGGCAAGACACTGACGCG 60.356 61.111 3.53 3.53 0.00 6.01
4185 4915 2.717639 AACAGAACAGGCAAGACACT 57.282 45.000 0.00 0.00 0.00 3.55
4192 4922 1.134220 AGAACCGAAACAGAACAGGCA 60.134 47.619 0.00 0.00 0.00 4.75
4207 4938 4.048504 CACGGAAAATCACCAAAAGAACC 58.951 43.478 0.00 0.00 0.00 3.62
4220 4951 2.500504 GAGAGTACTCCCCACGGAAAAT 59.499 50.000 19.38 0.00 37.86 1.82
4225 4956 1.486211 AATGAGAGTACTCCCCACGG 58.514 55.000 19.38 0.00 41.99 4.94
4233 4964 3.372025 GCCAATCCCCAAATGAGAGTACT 60.372 47.826 0.00 0.00 0.00 2.73
4240 4971 1.381056 CCGGCCAATCCCCAAATGA 60.381 57.895 2.24 0.00 0.00 2.57
4243 4974 0.975040 CAATCCGGCCAATCCCCAAA 60.975 55.000 2.24 0.00 0.00 3.28
4245 4976 2.161713 AACAATCCGGCCAATCCCCA 62.162 55.000 2.24 0.00 0.00 4.96
4246 4977 0.975556 AAACAATCCGGCCAATCCCC 60.976 55.000 2.24 0.00 0.00 4.81
4259 5022 5.192927 TCAATCTTATCCGGAGCAAACAAT 58.807 37.500 11.34 0.00 0.00 2.71
4278 5041 1.131126 CCATTTCGTCAGCGCTTCAAT 59.869 47.619 7.50 0.00 38.14 2.57
4279 5042 0.516877 CCATTTCGTCAGCGCTTCAA 59.483 50.000 7.50 0.00 38.14 2.69
4280 5043 1.298157 CCCATTTCGTCAGCGCTTCA 61.298 55.000 7.50 0.00 38.14 3.02
4281 5044 1.298859 ACCCATTTCGTCAGCGCTTC 61.299 55.000 7.50 2.70 38.14 3.86
4282 5045 0.889186 AACCCATTTCGTCAGCGCTT 60.889 50.000 7.50 0.00 38.14 4.68
4283 5046 0.889186 AAACCCATTTCGTCAGCGCT 60.889 50.000 2.64 2.64 38.14 5.92
4284 5047 0.039527 AAAACCCATTTCGTCAGCGC 60.040 50.000 0.00 0.00 38.14 5.92
4298 5061 6.790825 GCTGCGTCTATCGAATAATTAAAACC 59.209 38.462 0.00 0.00 42.86 3.27
4300 5063 6.073440 GGGCTGCGTCTATCGAATAATTAAAA 60.073 38.462 0.00 0.00 42.86 1.52
4301 5064 5.407387 GGGCTGCGTCTATCGAATAATTAAA 59.593 40.000 0.00 0.00 42.86 1.52
4315 5078 1.264749 TACAGGAATGGGCTGCGTCT 61.265 55.000 0.00 0.00 0.00 4.18
4326 5089 7.466804 TGTTTCAGGATTTTAGGTACAGGAAT 58.533 34.615 0.00 0.00 0.00 3.01
4329 5092 6.371825 GTCTGTTTCAGGATTTTAGGTACAGG 59.628 42.308 0.00 0.00 33.23 4.00
4338 5101 4.086706 AGGACGTCTGTTTCAGGATTTT 57.913 40.909 16.46 0.00 31.51 1.82
4343 5106 1.404315 GGCTAGGACGTCTGTTTCAGG 60.404 57.143 16.46 0.00 31.51 3.86
4346 5109 0.606604 TGGGCTAGGACGTCTGTTTC 59.393 55.000 16.46 0.00 0.00 2.78
4366 5129 2.478709 CGCTATAGCCGCTAGAAGGATG 60.479 54.545 19.00 0.00 37.91 3.51
4367 5130 1.746220 CGCTATAGCCGCTAGAAGGAT 59.254 52.381 19.00 4.95 37.91 3.24
4371 5134 0.596577 CACCGCTATAGCCGCTAGAA 59.403 55.000 19.00 0.00 37.91 2.10
4372 5135 1.863662 GCACCGCTATAGCCGCTAGA 61.864 60.000 19.00 0.00 37.91 2.43
4415 5205 2.420022 CAGAAAATCATTCCGCCGAACT 59.580 45.455 0.00 0.00 0.00 3.01
4419 5209 2.287915 CCTACAGAAAATCATTCCGCCG 59.712 50.000 0.00 0.00 0.00 6.46
4429 5219 2.097466 CGCGCAAATCCCTACAGAAAAT 59.903 45.455 8.75 0.00 0.00 1.82
4449 5239 2.650196 CCAACATGCCAACACCCG 59.350 61.111 0.00 0.00 0.00 5.28
4450 5240 1.836604 ACCCAACATGCCAACACCC 60.837 57.895 0.00 0.00 0.00 4.61
4455 5245 1.203038 ACAGATCACCCAACATGCCAA 60.203 47.619 0.00 0.00 0.00 4.52
4456 5246 0.405198 ACAGATCACCCAACATGCCA 59.595 50.000 0.00 0.00 0.00 4.92
4457 5247 0.813184 CACAGATCACCCAACATGCC 59.187 55.000 0.00 0.00 0.00 4.40
4464 5254 1.005037 GTGACGCACAGATCACCCA 60.005 57.895 0.00 0.00 39.49 4.51
4465 5255 2.094659 CGTGACGCACAGATCACCC 61.095 63.158 9.95 0.00 41.87 4.61
4548 5347 3.763356 ACGGCTGAGCTGCATCGA 61.763 61.111 14.22 0.00 38.71 3.59
4549 5348 3.561213 CACGGCTGAGCTGCATCG 61.561 66.667 14.22 5.79 38.71 3.84
4550 5349 1.094073 AATCACGGCTGAGCTGCATC 61.094 55.000 14.22 0.00 38.71 3.91
4551 5350 0.679002 AAATCACGGCTGAGCTGCAT 60.679 50.000 14.22 2.58 38.71 3.96
4552 5351 1.300971 GAAATCACGGCTGAGCTGCA 61.301 55.000 14.22 0.00 38.71 4.41
4555 5354 0.107945 GAGGAAATCACGGCTGAGCT 60.108 55.000 3.72 0.00 0.00 4.09
4560 5359 1.902508 TCAGAAGAGGAAATCACGGCT 59.097 47.619 0.00 0.00 0.00 5.52
4564 5363 9.558396 AGAATAATGATCAGAAGAGGAAATCAC 57.442 33.333 0.09 0.00 0.00 3.06
4591 5390 9.571816 GATCAGAATCTTCCTCAATCCTAAAAT 57.428 33.333 0.00 0.00 0.00 1.82
4592 5391 8.776119 AGATCAGAATCTTCCTCAATCCTAAAA 58.224 33.333 0.00 0.00 39.27 1.52
4593 5392 8.329346 AGATCAGAATCTTCCTCAATCCTAAA 57.671 34.615 0.00 0.00 39.27 1.85
4594 5393 7.927683 AGATCAGAATCTTCCTCAATCCTAA 57.072 36.000 0.00 0.00 39.27 2.69
4615 5414 9.759473 TCCTCAATCCTCAAAAAGAATAAAGAT 57.241 29.630 0.00 0.00 0.00 2.40
4621 5420 9.933240 AAGATATCCTCAATCCTCAAAAAGAAT 57.067 29.630 0.00 0.00 0.00 2.40
4632 5431 9.165035 GAAATGATCAGAAGATATCCTCAATCC 57.835 37.037 0.09 0.00 33.72 3.01
4641 5440 9.775854 CCTGTTACAGAAATGATCAGAAGATAT 57.224 33.333 14.66 0.00 31.41 1.63
4642 5441 8.206867 CCCTGTTACAGAAATGATCAGAAGATA 58.793 37.037 14.66 0.00 31.41 1.98
4643 5442 7.052873 CCCTGTTACAGAAATGATCAGAAGAT 58.947 38.462 14.66 0.00 33.08 2.40
4644 5443 6.409704 CCCTGTTACAGAAATGATCAGAAGA 58.590 40.000 14.66 0.00 32.44 2.87
4645 5444 5.587844 CCCCTGTTACAGAAATGATCAGAAG 59.412 44.000 14.66 0.00 32.44 2.85
4646 5445 5.250543 TCCCCTGTTACAGAAATGATCAGAA 59.749 40.000 14.66 0.00 32.44 3.02
4647 5446 4.782691 TCCCCTGTTACAGAAATGATCAGA 59.217 41.667 14.66 0.00 32.44 3.27
4648 5447 5.102953 TCCCCTGTTACAGAAATGATCAG 57.897 43.478 14.66 0.00 32.44 2.90
4649 5448 5.512942 TTCCCCTGTTACAGAAATGATCA 57.487 39.130 14.66 0.00 32.44 2.92
4650 5449 6.122277 TGATTCCCCTGTTACAGAAATGATC 58.878 40.000 14.66 10.37 32.44 2.92
4651 5450 6.078456 TGATTCCCCTGTTACAGAAATGAT 57.922 37.500 14.66 1.35 32.44 2.45
4652 5451 5.512942 TGATTCCCCTGTTACAGAAATGA 57.487 39.130 14.66 2.52 32.44 2.57
4653 5452 6.377996 TGATTGATTCCCCTGTTACAGAAATG 59.622 38.462 14.66 0.00 32.44 2.32
4654 5453 6.493166 TGATTGATTCCCCTGTTACAGAAAT 58.507 36.000 14.66 10.09 32.44 2.17
4655 5454 5.886609 TGATTGATTCCCCTGTTACAGAAA 58.113 37.500 14.66 5.68 32.44 2.52
4656 5455 5.512942 TGATTGATTCCCCTGTTACAGAA 57.487 39.130 14.66 0.73 32.44 3.02
4657 5456 5.512942 TTGATTGATTCCCCTGTTACAGA 57.487 39.130 14.66 0.00 32.44 3.41
4658 5457 5.476599 TGTTTGATTGATTCCCCTGTTACAG 59.523 40.000 5.22 5.22 0.00 2.74
4659 5458 5.389520 TGTTTGATTGATTCCCCTGTTACA 58.610 37.500 0.00 0.00 0.00 2.41
4660 5459 5.975693 TGTTTGATTGATTCCCCTGTTAC 57.024 39.130 0.00 0.00 0.00 2.50
4661 5460 6.515862 CGTTTGTTTGATTGATTCCCCTGTTA 60.516 38.462 0.00 0.00 0.00 2.41
4662 5461 5.610398 GTTTGTTTGATTGATTCCCCTGTT 58.390 37.500 0.00 0.00 0.00 3.16
4663 5462 4.261994 CGTTTGTTTGATTGATTCCCCTGT 60.262 41.667 0.00 0.00 0.00 4.00
4664 5463 4.022416 TCGTTTGTTTGATTGATTCCCCTG 60.022 41.667 0.00 0.00 0.00 4.45
4665 5464 4.148838 TCGTTTGTTTGATTGATTCCCCT 58.851 39.130 0.00 0.00 0.00 4.79
4666 5465 4.513198 TCGTTTGTTTGATTGATTCCCC 57.487 40.909 0.00 0.00 0.00 4.81
4667 5466 7.087639 TGTATTCGTTTGTTTGATTGATTCCC 58.912 34.615 0.00 0.00 0.00 3.97
4668 5467 8.424731 GTTGTATTCGTTTGTTTGATTGATTCC 58.575 33.333 0.00 0.00 0.00 3.01
4669 5468 8.147172 CGTTGTATTCGTTTGTTTGATTGATTC 58.853 33.333 0.00 0.00 0.00 2.52
4670 5469 7.646130 ACGTTGTATTCGTTTGTTTGATTGATT 59.354 29.630 0.00 0.00 38.38 2.57
4671 5470 7.112844 CACGTTGTATTCGTTTGTTTGATTGAT 59.887 33.333 0.00 0.00 39.55 2.57
4672 5471 6.412362 CACGTTGTATTCGTTTGTTTGATTGA 59.588 34.615 0.00 0.00 39.55 2.57
4673 5472 6.412362 TCACGTTGTATTCGTTTGTTTGATTG 59.588 34.615 0.00 0.00 39.55 2.67
4674 5473 6.487960 TCACGTTGTATTCGTTTGTTTGATT 58.512 32.000 0.00 0.00 39.55 2.57
4675 5474 6.050454 TCACGTTGTATTCGTTTGTTTGAT 57.950 33.333 0.00 0.00 39.55 2.57
4676 5475 5.466432 TCACGTTGTATTCGTTTGTTTGA 57.534 34.783 0.00 0.00 39.55 2.69
4677 5476 6.541754 TTTCACGTTGTATTCGTTTGTTTG 57.458 33.333 0.00 0.00 39.55 2.93
4678 5477 7.326547 AGTTTTTCACGTTGTATTCGTTTGTTT 59.673 29.630 0.00 0.00 39.55 2.83
4679 5478 6.802834 AGTTTTTCACGTTGTATTCGTTTGTT 59.197 30.769 0.00 0.00 39.55 2.83
4680 5479 6.316319 AGTTTTTCACGTTGTATTCGTTTGT 58.684 32.000 0.00 0.00 39.55 2.83
4681 5480 6.342849 CGAGTTTTTCACGTTGTATTCGTTTG 60.343 38.462 0.00 0.00 39.55 2.93
4682 5481 5.673717 CGAGTTTTTCACGTTGTATTCGTTT 59.326 36.000 0.00 0.00 39.55 3.60
4683 5482 5.192496 CGAGTTTTTCACGTTGTATTCGTT 58.808 37.500 0.00 0.00 39.55 3.85
4684 5483 4.268405 ACGAGTTTTTCACGTTGTATTCGT 59.732 37.500 0.00 0.00 40.06 3.85
4685 5484 4.754332 ACGAGTTTTTCACGTTGTATTCG 58.246 39.130 0.00 0.00 40.06 3.34
4686 5485 5.782200 GCTACGAGTTTTTCACGTTGTATTC 59.218 40.000 0.00 0.00 42.58 1.75
4687 5486 5.464389 AGCTACGAGTTTTTCACGTTGTATT 59.536 36.000 0.00 0.00 42.58 1.89
4688 5487 4.986659 AGCTACGAGTTTTTCACGTTGTAT 59.013 37.500 0.00 0.00 42.58 2.29
4689 5488 4.362279 AGCTACGAGTTTTTCACGTTGTA 58.638 39.130 0.00 0.00 42.58 2.41
4690 5489 3.192466 AGCTACGAGTTTTTCACGTTGT 58.808 40.909 0.00 0.00 42.58 3.32
4691 5490 3.489785 AGAGCTACGAGTTTTTCACGTTG 59.510 43.478 0.00 0.00 42.58 4.10
4692 5491 3.714391 AGAGCTACGAGTTTTTCACGTT 58.286 40.909 0.00 0.00 42.58 3.99
4693 5492 3.306818 GAGAGCTACGAGTTTTTCACGT 58.693 45.455 0.00 0.00 44.49 4.49
4694 5493 2.662156 GGAGAGCTACGAGTTTTTCACG 59.338 50.000 0.00 0.00 36.30 4.35
4695 5494 3.915536 AGGAGAGCTACGAGTTTTTCAC 58.084 45.455 0.00 0.00 0.00 3.18
4696 5495 4.307432 CAAGGAGAGCTACGAGTTTTTCA 58.693 43.478 0.00 0.00 0.00 2.69
4697 5496 3.123790 GCAAGGAGAGCTACGAGTTTTTC 59.876 47.826 0.00 0.00 0.00 2.29
4698 5497 3.067833 GCAAGGAGAGCTACGAGTTTTT 58.932 45.455 0.00 0.00 0.00 1.94
4699 5498 2.300437 AGCAAGGAGAGCTACGAGTTTT 59.700 45.455 0.00 0.00 41.32 2.43
4700 5499 1.896465 AGCAAGGAGAGCTACGAGTTT 59.104 47.619 0.00 0.00 41.32 2.66
4701 5500 1.551452 AGCAAGGAGAGCTACGAGTT 58.449 50.000 0.00 0.00 41.32 3.01
4702 5501 2.421751 TAGCAAGGAGAGCTACGAGT 57.578 50.000 0.00 0.00 43.25 4.18
4703 5502 3.440228 GTTTAGCAAGGAGAGCTACGAG 58.560 50.000 0.00 0.00 43.71 4.18
4704 5503 2.159421 CGTTTAGCAAGGAGAGCTACGA 60.159 50.000 4.93 0.00 43.20 3.43
4705 5504 2.186076 CGTTTAGCAAGGAGAGCTACG 58.814 52.381 0.00 0.00 43.71 3.51
4706 5505 2.924290 CACGTTTAGCAAGGAGAGCTAC 59.076 50.000 0.00 0.00 43.71 3.58
4707 5506 2.823747 TCACGTTTAGCAAGGAGAGCTA 59.176 45.455 0.00 0.00 43.25 3.32
4708 5507 1.618837 TCACGTTTAGCAAGGAGAGCT 59.381 47.619 0.00 0.00 45.77 4.09
4709 5508 2.080286 TCACGTTTAGCAAGGAGAGC 57.920 50.000 0.00 0.00 0.00 4.09
4710 5509 4.511826 AGTTTTCACGTTTAGCAAGGAGAG 59.488 41.667 0.00 0.00 0.00 3.20
4711 5510 4.448210 AGTTTTCACGTTTAGCAAGGAGA 58.552 39.130 0.00 0.00 0.00 3.71
4712 5511 4.511826 AGAGTTTTCACGTTTAGCAAGGAG 59.488 41.667 0.00 0.00 0.00 3.69
4713 5512 4.448210 AGAGTTTTCACGTTTAGCAAGGA 58.552 39.130 0.00 0.00 0.00 3.36
4714 5513 4.813296 AGAGTTTTCACGTTTAGCAAGG 57.187 40.909 0.00 0.00 0.00 3.61
4715 5514 7.506296 AAAAAGAGTTTTCACGTTTAGCAAG 57.494 32.000 0.00 0.00 30.96 4.01
4751 5550 3.181448 TGCTCTTACTCCCTTCGGTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
4752 5551 2.370849 TGCTCTTACTCCCTTCGGTTTT 59.629 45.455 0.00 0.00 0.00 2.43
4753 5552 1.975680 TGCTCTTACTCCCTTCGGTTT 59.024 47.619 0.00 0.00 0.00 3.27
4754 5553 1.640917 TGCTCTTACTCCCTTCGGTT 58.359 50.000 0.00 0.00 0.00 4.44
4755 5554 1.275573 GTTGCTCTTACTCCCTTCGGT 59.724 52.381 0.00 0.00 0.00 4.69
4756 5555 1.550976 AGTTGCTCTTACTCCCTTCGG 59.449 52.381 0.00 0.00 0.00 4.30
4757 5556 3.254892 GAAGTTGCTCTTACTCCCTTCG 58.745 50.000 0.00 0.00 36.40 3.79
4758 5557 4.273148 TGAAGTTGCTCTTACTCCCTTC 57.727 45.455 0.00 0.00 36.40 3.46
4759 5558 4.706842 TTGAAGTTGCTCTTACTCCCTT 57.293 40.909 0.00 0.00 36.40 3.95
4760 5559 4.566488 CCATTGAAGTTGCTCTTACTCCCT 60.566 45.833 0.00 0.00 36.40 4.20
4761 5560 3.691609 CCATTGAAGTTGCTCTTACTCCC 59.308 47.826 0.00 0.00 36.40 4.30
4762 5561 3.691609 CCCATTGAAGTTGCTCTTACTCC 59.308 47.826 0.00 0.00 36.40 3.85
4763 5562 3.691609 CCCCATTGAAGTTGCTCTTACTC 59.308 47.826 0.00 0.00 36.40 2.59
4764 5563 3.074538 ACCCCATTGAAGTTGCTCTTACT 59.925 43.478 0.00 0.00 36.40 2.24
4765 5564 3.191371 CACCCCATTGAAGTTGCTCTTAC 59.809 47.826 0.00 0.00 36.40 2.34
4766 5565 3.073798 TCACCCCATTGAAGTTGCTCTTA 59.926 43.478 0.00 0.00 36.40 2.10
4767 5566 2.158475 TCACCCCATTGAAGTTGCTCTT 60.158 45.455 0.00 0.00 39.32 2.85
4768 5567 1.425066 TCACCCCATTGAAGTTGCTCT 59.575 47.619 0.00 0.00 0.00 4.09
4769 5568 1.909700 TCACCCCATTGAAGTTGCTC 58.090 50.000 0.00 0.00 0.00 4.26
4770 5569 2.610438 ATCACCCCATTGAAGTTGCT 57.390 45.000 0.00 0.00 0.00 3.91
4771 5570 2.562298 TGAATCACCCCATTGAAGTTGC 59.438 45.455 0.00 0.00 0.00 4.17
4772 5571 5.410355 AATGAATCACCCCATTGAAGTTG 57.590 39.130 0.00 0.00 32.34 3.16
4773 5572 5.336690 CGAAATGAATCACCCCATTGAAGTT 60.337 40.000 0.00 0.00 33.70 2.66
4774 5573 4.158394 CGAAATGAATCACCCCATTGAAGT 59.842 41.667 0.00 0.00 33.70 3.01
4775 5574 4.158394 ACGAAATGAATCACCCCATTGAAG 59.842 41.667 0.00 0.00 33.70 3.02
4776 5575 4.085733 ACGAAATGAATCACCCCATTGAA 58.914 39.130 0.00 0.00 33.70 2.69
4777 5576 3.694072 GACGAAATGAATCACCCCATTGA 59.306 43.478 0.00 0.00 33.70 2.57
4778 5577 3.181487 GGACGAAATGAATCACCCCATTG 60.181 47.826 0.00 0.00 33.70 2.82
4779 5578 3.023832 GGACGAAATGAATCACCCCATT 58.976 45.455 0.00 0.00 34.75 3.16
4780 5579 2.654863 GGACGAAATGAATCACCCCAT 58.345 47.619 0.00 0.00 0.00 4.00
4781 5580 1.677518 CGGACGAAATGAATCACCCCA 60.678 52.381 0.00 0.00 0.00 4.96
4782 5581 1.014352 CGGACGAAATGAATCACCCC 58.986 55.000 0.00 0.00 0.00 4.95
4783 5582 0.377203 GCGGACGAAATGAATCACCC 59.623 55.000 0.00 0.00 0.00 4.61
4784 5583 0.026285 CGCGGACGAAATGAATCACC 59.974 55.000 0.00 0.00 43.93 4.02
4785 5584 0.026285 CCGCGGACGAAATGAATCAC 59.974 55.000 24.07 0.00 43.93 3.06
4786 5585 1.701545 GCCGCGGACGAAATGAATCA 61.702 55.000 33.48 0.00 43.93 2.57
4787 5586 1.011131 GCCGCGGACGAAATGAATC 60.011 57.895 33.48 1.41 43.93 2.52
4788 5587 2.469516 GGCCGCGGACGAAATGAAT 61.470 57.895 33.48 0.00 43.93 2.57
4789 5588 3.122323 GGCCGCGGACGAAATGAA 61.122 61.111 33.48 0.00 43.93 2.57
4802 5601 3.719144 GACCCAAACGAACGGCCG 61.719 66.667 26.86 26.86 0.00 6.13
4803 5602 3.719144 CGACCCAAACGAACGGCC 61.719 66.667 0.00 0.00 0.00 6.13
4804 5603 3.719144 CCGACCCAAACGAACGGC 61.719 66.667 0.00 0.00 37.32 5.68
4805 5604 3.719144 GCCGACCCAAACGAACGG 61.719 66.667 0.00 0.00 45.26 4.44
4806 5605 4.067016 CGCCGACCCAAACGAACG 62.067 66.667 0.00 0.00 0.00 3.95
4807 5606 4.379143 GCGCCGACCCAAACGAAC 62.379 66.667 0.00 0.00 0.00 3.95
4816 5615 3.652000 TTTTTGTCCGCGCCGACC 61.652 61.111 23.06 8.48 31.35 4.79
4830 5629 0.313987 GTGCGTTAGGGCAGCTTTTT 59.686 50.000 0.00 0.00 44.93 1.94
4831 5630 1.956802 GTGCGTTAGGGCAGCTTTT 59.043 52.632 0.00 0.00 44.93 2.27
4832 5631 3.668386 GTGCGTTAGGGCAGCTTT 58.332 55.556 0.00 0.00 44.93 3.51
4836 5635 2.813908 GTCGGTGCGTTAGGGCAG 60.814 66.667 0.00 0.00 44.93 4.85
4837 5636 4.382320 GGTCGGTGCGTTAGGGCA 62.382 66.667 0.00 0.00 41.45 5.36
4839 5638 2.734948 TTTGGGTCGGTGCGTTAGGG 62.735 60.000 0.00 0.00 0.00 3.53
4840 5639 1.301874 TTTGGGTCGGTGCGTTAGG 60.302 57.895 0.00 0.00 0.00 2.69
4841 5640 1.864176 GTTTGGGTCGGTGCGTTAG 59.136 57.895 0.00 0.00 0.00 2.34
4842 5641 1.955157 CGTTTGGGTCGGTGCGTTA 60.955 57.895 0.00 0.00 0.00 3.18
4843 5642 3.273834 CGTTTGGGTCGGTGCGTT 61.274 61.111 0.00 0.00 0.00 4.84
4845 5644 4.973055 TCCGTTTGGGTCGGTGCG 62.973 66.667 4.36 0.00 46.86 5.34
4846 5645 3.351416 GTCCGTTTGGGTCGGTGC 61.351 66.667 4.36 0.00 46.86 5.01
4847 5646 3.039588 CGTCCGTTTGGGTCGGTG 61.040 66.667 4.36 0.00 46.86 4.94
4851 5650 3.708734 CGCACGTCCGTTTGGGTC 61.709 66.667 0.00 0.00 37.00 4.46
4852 5651 4.534141 ACGCACGTCCGTTTGGGT 62.534 61.111 0.00 0.00 38.47 4.51
4858 5657 4.936823 AAGCGAACGCACGTCCGT 62.937 61.111 20.66 0.00 44.88 4.69
4859 5658 3.609422 GAAAGCGAACGCACGTCCG 62.609 63.158 20.66 0.00 44.88 4.79
4860 5659 2.170273 GAAAGCGAACGCACGTCC 59.830 61.111 20.66 2.34 44.88 4.79
4861 5660 2.201885 CGAAAGCGAACGCACGTC 60.202 61.111 20.66 12.78 44.88 4.34
4862 5661 2.924285 GACGAAAGCGAACGCACGT 61.924 57.895 26.04 26.04 44.39 4.49
4863 5662 2.201885 GACGAAAGCGAACGCACG 60.202 61.111 20.66 21.43 44.88 5.34
4864 5663 2.170273 GGACGAAAGCGAACGCAC 59.830 61.111 20.66 10.56 44.88 5.34
4865 5664 3.399770 CGGACGAAAGCGAACGCA 61.400 61.111 20.66 0.00 44.88 5.24
4866 5665 3.331180 GACGGACGAAAGCGAACGC 62.331 63.158 11.31 11.31 41.21 4.84
4867 5666 1.728426 AGACGGACGAAAGCGAACG 60.728 57.895 0.00 0.00 42.39 3.95
4868 5667 1.773496 CAGACGGACGAAAGCGAAC 59.227 57.895 0.00 0.00 41.64 3.95
4869 5668 2.019951 GCAGACGGACGAAAGCGAA 61.020 57.895 0.00 0.00 41.64 4.70
4870 5669 2.430244 GCAGACGGACGAAAGCGA 60.430 61.111 0.00 0.00 41.64 4.93
4871 5670 3.479269 GGCAGACGGACGAAAGCG 61.479 66.667 0.00 0.00 44.79 4.68
4882 5681 2.124695 GGGAATGGGTCGGCAGAC 60.125 66.667 8.64 8.64 46.34 3.51
4883 5682 3.781307 CGGGAATGGGTCGGCAGA 61.781 66.667 0.00 0.00 0.00 4.26
4884 5683 4.856801 CCGGGAATGGGTCGGCAG 62.857 72.222 0.00 0.00 37.25 4.85
4889 5688 2.871795 AAATGGGCCGGGAATGGGTC 62.872 60.000 2.18 0.00 0.00 4.46
4890 5689 2.469563 AAAATGGGCCGGGAATGGGT 62.470 55.000 2.18 0.00 0.00 4.51
4891 5690 1.271127 AAAAATGGGCCGGGAATGGG 61.271 55.000 2.18 0.00 0.00 4.00
4892 5691 0.107752 CAAAAATGGGCCGGGAATGG 60.108 55.000 2.18 0.00 0.00 3.16
4893 5692 0.901124 TCAAAAATGGGCCGGGAATG 59.099 50.000 2.18 0.00 0.00 2.67
4894 5693 1.194218 CTCAAAAATGGGCCGGGAAT 58.806 50.000 2.18 0.00 0.00 3.01
4895 5694 1.540435 GCTCAAAAATGGGCCGGGAA 61.540 55.000 2.18 0.00 0.00 3.97
4896 5695 1.981853 GCTCAAAAATGGGCCGGGA 60.982 57.895 2.18 0.00 0.00 5.14
4897 5696 2.578664 GCTCAAAAATGGGCCGGG 59.421 61.111 2.18 0.00 0.00 5.73
4898 5697 2.578664 GGCTCAAAAATGGGCCGG 59.421 61.111 3.61 0.00 35.08 6.13
4900 5699 1.197812 ATCAGGCTCAAAAATGGGCC 58.802 50.000 11.78 11.78 44.38 5.80
4901 5700 3.004862 CAAATCAGGCTCAAAAATGGGC 58.995 45.455 0.00 0.00 0.00 5.36
4902 5701 3.004862 GCAAATCAGGCTCAAAAATGGG 58.995 45.455 0.00 0.00 0.00 4.00
4903 5702 2.669434 CGCAAATCAGGCTCAAAAATGG 59.331 45.455 0.00 0.00 0.00 3.16
4904 5703 3.319755 ACGCAAATCAGGCTCAAAAATG 58.680 40.909 0.00 0.00 0.00 2.32
4905 5704 3.665745 ACGCAAATCAGGCTCAAAAAT 57.334 38.095 0.00 0.00 0.00 1.82
4906 5705 3.122297 CAACGCAAATCAGGCTCAAAAA 58.878 40.909 0.00 0.00 0.00 1.94
4907 5706 2.545532 CCAACGCAAATCAGGCTCAAAA 60.546 45.455 0.00 0.00 0.00 2.44
4908 5707 1.000385 CCAACGCAAATCAGGCTCAAA 60.000 47.619 0.00 0.00 0.00 2.69
4909 5708 0.597568 CCAACGCAAATCAGGCTCAA 59.402 50.000 0.00 0.00 0.00 3.02
4910 5709 1.865788 GCCAACGCAAATCAGGCTCA 61.866 55.000 0.00 0.00 42.01 4.26
4911 5710 1.153958 GCCAACGCAAATCAGGCTC 60.154 57.895 0.00 0.00 42.01 4.70
4912 5711 2.964978 GCCAACGCAAATCAGGCT 59.035 55.556 0.00 0.00 42.01 4.58
4913 5712 2.504681 CGCCAACGCAAATCAGGC 60.505 61.111 0.00 0.00 41.86 4.85
4923 5722 4.368808 CTTGTGTCCGCGCCAACG 62.369 66.667 0.00 0.00 44.07 4.10
4924 5723 2.970324 TCTTGTGTCCGCGCCAAC 60.970 61.111 0.00 0.00 0.00 3.77
4925 5724 2.970324 GTCTTGTGTCCGCGCCAA 60.970 61.111 0.00 0.00 0.00 4.52
4929 5728 2.126071 ATCCGTCTTGTGTCCGCG 60.126 61.111 0.00 0.00 0.00 6.46
4930 5729 2.740714 GCATCCGTCTTGTGTCCGC 61.741 63.158 0.00 0.00 0.00 5.54
4931 5730 2.444624 CGCATCCGTCTTGTGTCCG 61.445 63.158 0.00 0.00 0.00 4.79
4932 5731 2.740714 GCGCATCCGTCTTGTGTCC 61.741 63.158 0.30 0.00 36.67 4.02
4933 5732 2.778679 GCGCATCCGTCTTGTGTC 59.221 61.111 0.30 0.00 36.67 3.67
4934 5733 3.112075 CGCGCATCCGTCTTGTGT 61.112 61.111 8.75 0.00 36.67 3.72
4935 5734 4.505217 GCGCGCATCCGTCTTGTG 62.505 66.667 29.10 0.00 36.67 3.33
4951 5750 4.459089 AGGAAAGAGGGCGAGCGC 62.459 66.667 6.27 6.27 41.06 5.92
4952 5751 2.202810 GAGGAAAGAGGGCGAGCG 60.203 66.667 0.00 0.00 0.00 5.03
4953 5752 1.448717 GTGAGGAAAGAGGGCGAGC 60.449 63.158 0.00 0.00 0.00 5.03
4954 5753 1.219393 GGTGAGGAAAGAGGGCGAG 59.781 63.158 0.00 0.00 0.00 5.03
4955 5754 2.646175 CGGTGAGGAAAGAGGGCGA 61.646 63.158 0.00 0.00 0.00 5.54
4956 5755 2.125512 CGGTGAGGAAAGAGGGCG 60.126 66.667 0.00 0.00 0.00 6.13
4957 5756 2.269241 CCGGTGAGGAAAGAGGGC 59.731 66.667 0.00 0.00 45.00 5.19
4958 5757 2.990479 CCCGGTGAGGAAAGAGGG 59.010 66.667 0.00 0.00 45.00 4.30
4959 5758 2.269241 GCCCGGTGAGGAAAGAGG 59.731 66.667 0.00 0.00 45.00 3.69
4960 5759 2.269241 GGCCCGGTGAGGAAAGAG 59.731 66.667 0.00 0.00 45.00 2.85
4961 5760 3.327404 GGGCCCGGTGAGGAAAGA 61.327 66.667 5.69 0.00 45.00 2.52
4962 5761 4.778143 CGGGCCCGGTGAGGAAAG 62.778 72.222 37.42 3.50 45.00 2.62
4979 5778 2.672996 AATGTGCCACCGACCAGC 60.673 61.111 0.00 0.00 0.00 4.85
4980 5779 2.334946 CCAATGTGCCACCGACCAG 61.335 63.158 0.00 0.00 0.00 4.00
4981 5780 2.135903 ATCCAATGTGCCACCGACCA 62.136 55.000 0.00 0.00 0.00 4.02
4982 5781 0.965363 AATCCAATGTGCCACCGACC 60.965 55.000 0.00 0.00 0.00 4.79
4983 5782 0.451783 GAATCCAATGTGCCACCGAC 59.548 55.000 0.00 0.00 0.00 4.79
4984 5783 0.037447 TGAATCCAATGTGCCACCGA 59.963 50.000 0.00 0.00 0.00 4.69
4985 5784 0.171007 GTGAATCCAATGTGCCACCG 59.829 55.000 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.