Multiple sequence alignment - TraesCS2A01G337200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G337200 chr2A 100.000 4354 0 0 1 4354 570729161 570733514 0.000000e+00 8041.0
1 TraesCS2A01G337200 chr2A 96.203 79 3 0 2970 3048 483604650 483604572 3.530000e-26 130.0
2 TraesCS2A01G337200 chr2B 86.662 2639 173 70 234 2814 491351370 491348853 0.000000e+00 2758.0
3 TraesCS2A01G337200 chr2B 91.521 1203 59 14 2864 4028 491348844 491347647 0.000000e+00 1616.0
4 TraesCS2A01G337200 chr2B 87.037 270 32 3 4029 4296 491346052 491345784 7.080000e-78 302.0
5 TraesCS2A01G337200 chr2B 94.048 84 3 2 2970 3052 41963858 41963940 4.570000e-25 126.0
6 TraesCS2A01G337200 chr2B 84.672 137 7 7 82 218 491351582 491351460 1.640000e-24 124.0
7 TraesCS2A01G337200 chr2B 98.413 63 1 0 4292 4354 491185215 491185153 1.280000e-20 111.0
8 TraesCS2A01G337200 chr2D 85.453 2351 143 88 114 2359 419048618 419046362 0.000000e+00 2263.0
9 TraesCS2A01G337200 chr2D 90.426 658 42 11 3702 4354 419044370 419043729 0.000000e+00 846.0
10 TraesCS2A01G337200 chr2D 93.542 511 11 4 3165 3675 419045503 419045015 0.000000e+00 741.0
11 TraesCS2A01G337200 chr2D 88.462 442 36 6 2359 2786 419046268 419045828 1.790000e-143 520.0
12 TraesCS2A01G337200 chr2D 88.525 183 15 3 3672 3848 419044656 419044474 2.640000e-52 217.0
13 TraesCS2A01G337200 chr7B 96.203 79 3 0 2970 3048 740996161 740996239 3.530000e-26 130.0
14 TraesCS2A01G337200 chr7A 95.122 82 4 0 1 82 520353082 520353163 3.530000e-26 130.0
15 TraesCS2A01G337200 chr7A 93.902 82 5 0 1 82 184116628 184116709 1.640000e-24 124.0
16 TraesCS2A01G337200 chr7A 93.902 82 5 0 1 82 316870526 316870445 1.640000e-24 124.0
17 TraesCS2A01G337200 chr5B 96.203 79 3 0 2970 3048 184285270 184285348 3.530000e-26 130.0
18 TraesCS2A01G337200 chr5B 95.000 80 4 0 2970 3049 269975161 269975240 4.570000e-25 126.0
19 TraesCS2A01G337200 chr4A 95.122 82 4 0 1 82 437767559 437767640 3.530000e-26 130.0
20 TraesCS2A01G337200 chr4A 92.771 83 5 1 1 82 61337806 61337724 7.650000e-23 119.0
21 TraesCS2A01G337200 chr4A 92.683 82 4 1 1 82 236033130 236033209 2.750000e-22 117.0
22 TraesCS2A01G337200 chr4A 88.750 80 7 2 3622 3699 472961347 472961268 3.580000e-16 97.1
23 TraesCS2A01G337200 chr4A 89.474 76 7 1 3625 3699 488252337 488252262 1.290000e-15 95.3
24 TraesCS2A01G337200 chr3A 95.122 82 4 0 1 82 196366686 196366605 3.530000e-26 130.0
25 TraesCS2A01G337200 chrUn 94.937 79 4 0 2970 3048 101630805 101630883 1.640000e-24 124.0
26 TraesCS2A01G337200 chr4D 94.937 79 4 0 2970 3048 64347366 64347444 1.640000e-24 124.0
27 TraesCS2A01G337200 chr4D 89.873 79 7 1 3621 3698 93609373 93609451 2.770000e-17 100.0
28 TraesCS2A01G337200 chr3B 93.023 86 5 1 2970 3054 53239884 53239799 1.640000e-24 124.0
29 TraesCS2A01G337200 chr1A 92.771 83 5 1 1 82 132058316 132058398 7.650000e-23 119.0
30 TraesCS2A01G337200 chr1A 92.683 82 6 0 1 82 339066243 339066162 7.650000e-23 119.0
31 TraesCS2A01G337200 chr1A 88.095 84 9 1 3617 3699 80687946 80687863 9.970000e-17 99.0
32 TraesCS2A01G337200 chr6B 90.476 84 7 1 3617 3699 680933317 680933234 4.600000e-20 110.0
33 TraesCS2A01G337200 chr5A 91.892 74 5 1 3625 3697 370102518 370102445 7.700000e-18 102.0
34 TraesCS2A01G337200 chr4B 89.744 78 8 0 3622 3699 132053242 132053319 2.770000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G337200 chr2A 570729161 570733514 4353 False 8041.0 8041 100.0000 1 4354 1 chr2A.!!$F1 4353
1 TraesCS2A01G337200 chr2B 491345784 491351582 5798 True 1200.0 2758 87.4730 82 4296 4 chr2B.!!$R2 4214
2 TraesCS2A01G337200 chr2D 419043729 419048618 4889 True 917.4 2263 89.2816 114 4354 5 chr2D.!!$R1 4240

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 614 0.110373 GGCACAAATCGACGGACAAC 60.110 55.0 0.00 0.0 0.00 3.32 F
1374 1510 0.109272 TCGCGCTCAAGAAGGTACTG 60.109 55.0 5.56 0.0 40.86 2.74 F
2559 2881 0.040603 GTGCAAGCACAGACAAGCTC 60.041 55.0 19.47 0.0 45.53 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1784 0.445436 GGTCGCTCTCAAATGCACAG 59.555 55.0 0.00 0.0 0.00 3.66 R
3293 3660 0.997196 GAATGTACGCCTTGTCGACC 59.003 55.0 14.12 0.0 0.00 4.79 R
3854 4840 0.465287 GCCATGGCGAATCCCAAATT 59.535 50.0 23.48 0.0 38.61 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.461321 AGGCTTTCCCCTTCCTTTCT 58.539 50.000 0.00 0.00 0.00 2.52
21 22 1.076187 AGGCTTTCCCCTTCCTTTCTG 59.924 52.381 0.00 0.00 0.00 3.02
22 23 1.550327 GCTTTCCCCTTCCTTTCTGG 58.450 55.000 0.00 0.00 37.10 3.86
23 24 1.550327 CTTTCCCCTTCCTTTCTGGC 58.450 55.000 0.00 0.00 35.26 4.85
24 25 0.856982 TTTCCCCTTCCTTTCTGGCA 59.143 50.000 0.00 0.00 35.26 4.92
25 26 1.084018 TTCCCCTTCCTTTCTGGCAT 58.916 50.000 0.00 0.00 35.26 4.40
26 27 1.084018 TCCCCTTCCTTTCTGGCATT 58.916 50.000 0.00 0.00 35.26 3.56
27 28 2.283834 TCCCCTTCCTTTCTGGCATTA 58.716 47.619 0.00 0.00 35.26 1.90
28 29 2.858768 TCCCCTTCCTTTCTGGCATTAT 59.141 45.455 0.00 0.00 35.26 1.28
29 30 2.961062 CCCCTTCCTTTCTGGCATTATG 59.039 50.000 0.00 0.00 35.26 1.90
30 31 2.363359 CCCTTCCTTTCTGGCATTATGC 59.637 50.000 8.93 8.93 44.08 3.14
43 44 4.963276 GCATTATGCAGTTTAGTCCACA 57.037 40.909 12.80 0.00 44.26 4.17
44 45 4.913376 GCATTATGCAGTTTAGTCCACAG 58.087 43.478 12.80 0.00 44.26 3.66
45 46 4.635765 GCATTATGCAGTTTAGTCCACAGA 59.364 41.667 12.80 0.00 44.26 3.41
46 47 5.297776 GCATTATGCAGTTTAGTCCACAGAT 59.702 40.000 12.80 0.00 44.26 2.90
47 48 6.483307 GCATTATGCAGTTTAGTCCACAGATA 59.517 38.462 12.80 0.00 44.26 1.98
48 49 7.519008 GCATTATGCAGTTTAGTCCACAGATAC 60.519 40.741 12.80 0.00 44.26 2.24
49 50 4.882842 TGCAGTTTAGTCCACAGATACA 57.117 40.909 0.00 0.00 0.00 2.29
50 51 5.222079 TGCAGTTTAGTCCACAGATACAA 57.778 39.130 0.00 0.00 0.00 2.41
51 52 5.804639 TGCAGTTTAGTCCACAGATACAAT 58.195 37.500 0.00 0.00 0.00 2.71
52 53 5.874810 TGCAGTTTAGTCCACAGATACAATC 59.125 40.000 0.00 0.00 0.00 2.67
53 54 5.294552 GCAGTTTAGTCCACAGATACAATCC 59.705 44.000 0.00 0.00 0.00 3.01
54 55 6.406370 CAGTTTAGTCCACAGATACAATCCA 58.594 40.000 0.00 0.00 0.00 3.41
55 56 7.050377 CAGTTTAGTCCACAGATACAATCCAT 58.950 38.462 0.00 0.00 0.00 3.41
56 57 7.554118 CAGTTTAGTCCACAGATACAATCCATT 59.446 37.037 0.00 0.00 0.00 3.16
57 58 8.109634 AGTTTAGTCCACAGATACAATCCATTT 58.890 33.333 0.00 0.00 0.00 2.32
58 59 8.398665 GTTTAGTCCACAGATACAATCCATTTC 58.601 37.037 0.00 0.00 0.00 2.17
59 60 6.319048 AGTCCACAGATACAATCCATTTCT 57.681 37.500 0.00 0.00 0.00 2.52
60 61 6.725364 AGTCCACAGATACAATCCATTTCTT 58.275 36.000 0.00 0.00 0.00 2.52
61 62 7.177878 AGTCCACAGATACAATCCATTTCTTT 58.822 34.615 0.00 0.00 0.00 2.52
62 63 7.121759 AGTCCACAGATACAATCCATTTCTTTG 59.878 37.037 0.00 0.00 0.00 2.77
63 64 7.121168 GTCCACAGATACAATCCATTTCTTTGA 59.879 37.037 0.00 0.00 0.00 2.69
64 65 7.835682 TCCACAGATACAATCCATTTCTTTGAT 59.164 33.333 0.00 0.00 0.00 2.57
65 66 9.123902 CCACAGATACAATCCATTTCTTTGATA 57.876 33.333 0.00 0.00 0.00 2.15
73 74 9.358406 ACAATCCATTTCTTTGATATAGATGCA 57.642 29.630 0.00 0.00 0.00 3.96
91 92 4.540359 TGCATACTTAGTAACGGTGGTT 57.460 40.909 0.00 0.00 40.20 3.67
109 110 5.867174 GGTGGTTTATATTTTGGTTGTGCTC 59.133 40.000 0.00 0.00 0.00 4.26
148 149 5.049267 GGTGGTTTAAATTCGAGCACTAACA 60.049 40.000 13.89 0.00 40.55 2.41
149 150 6.349033 GGTGGTTTAAATTCGAGCACTAACAT 60.349 38.462 13.89 0.00 40.55 2.71
150 151 7.148373 GGTGGTTTAAATTCGAGCACTAACATA 60.148 37.037 13.89 0.00 40.55 2.29
151 152 7.691050 GTGGTTTAAATTCGAGCACTAACATAC 59.309 37.037 9.43 0.00 38.41 2.39
152 153 6.898189 GGTTTAAATTCGAGCACTAACATACG 59.102 38.462 0.00 0.00 0.00 3.06
153 154 7.412237 GGTTTAAATTCGAGCACTAACATACGT 60.412 37.037 0.00 0.00 0.00 3.57
154 155 5.450376 AAATTCGAGCACTAACATACGTG 57.550 39.130 0.00 0.00 0.00 4.49
184 193 4.995487 TGTATGTGCCGTTGTTGTACATTA 59.005 37.500 0.00 0.00 39.34 1.90
198 208 4.617959 TGTACATTAGTCTGCGCTATTCC 58.382 43.478 9.73 0.00 0.00 3.01
218 228 3.456644 TCCATATCGCTGGGTTTTTCCTA 59.543 43.478 0.00 0.00 36.89 2.94
219 229 3.815401 CCATATCGCTGGGTTTTTCCTAG 59.185 47.826 0.00 0.00 45.96 3.02
221 231 2.943036 TCGCTGGGTTTTTCCTAGTT 57.057 45.000 0.00 0.00 45.14 2.24
222 232 2.774687 TCGCTGGGTTTTTCCTAGTTC 58.225 47.619 0.00 0.00 45.14 3.01
223 233 2.370849 TCGCTGGGTTTTTCCTAGTTCT 59.629 45.455 0.00 0.00 45.14 3.01
224 234 2.484264 CGCTGGGTTTTTCCTAGTTCTG 59.516 50.000 0.00 0.00 45.14 3.02
225 235 3.487372 GCTGGGTTTTTCCTAGTTCTGT 58.513 45.455 0.00 0.00 45.14 3.41
287 379 1.671328 GAATTTCAGCGGCTAGAACCC 59.329 52.381 0.26 0.00 0.00 4.11
289 381 2.515996 TTTCAGCGGCTAGAACCCCG 62.516 60.000 0.26 0.00 46.94 5.73
432 532 2.214216 CGGTGGGACTGGGAGAACA 61.214 63.158 0.00 0.00 0.00 3.18
436 536 0.191064 TGGGACTGGGAGAACACTCT 59.809 55.000 0.00 0.00 33.28 3.24
460 566 2.351276 GAGTGTGGGGTTGCCGAT 59.649 61.111 0.00 0.00 0.00 4.18
470 576 1.810030 GTTGCCGATCCCGACAGTC 60.810 63.158 0.00 0.00 38.22 3.51
508 614 0.110373 GGCACAAATCGACGGACAAC 60.110 55.000 0.00 0.00 0.00 3.32
520 626 1.295746 GGACAACCGAGTCTTCCCC 59.704 63.158 0.00 0.00 38.57 4.81
539 645 1.961277 GAGGGACCACGTGCACAAG 60.961 63.158 18.64 8.14 0.00 3.16
551 657 2.218934 GCACAAGCACACACAATGC 58.781 52.632 0.00 0.00 43.74 3.56
588 694 3.063510 TGCTCTTCACTGAAATCTGGG 57.936 47.619 0.00 0.00 0.00 4.45
623 729 2.334023 GGCTAATCTCACCCTGGATCT 58.666 52.381 0.00 0.00 0.00 2.75
629 735 1.063642 TCTCACCCTGGATCTGATCGT 60.064 52.381 11.28 1.28 0.00 3.73
632 738 3.371034 TCACCCTGGATCTGATCGTAAA 58.629 45.455 11.28 0.00 0.00 2.01
634 740 3.133003 CACCCTGGATCTGATCGTAAACT 59.867 47.826 11.28 0.00 0.00 2.66
635 741 4.341235 CACCCTGGATCTGATCGTAAACTA 59.659 45.833 11.28 0.00 0.00 2.24
636 742 4.341520 ACCCTGGATCTGATCGTAAACTAC 59.658 45.833 11.28 0.00 0.00 2.73
637 743 4.585162 CCCTGGATCTGATCGTAAACTACT 59.415 45.833 11.28 0.00 0.00 2.57
638 744 5.278561 CCCTGGATCTGATCGTAAACTACTC 60.279 48.000 11.28 0.00 0.00 2.59
661 790 7.016153 TCCTCCTATATTCACACAAACAACT 57.984 36.000 0.00 0.00 0.00 3.16
662 791 7.103641 TCCTCCTATATTCACACAAACAACTC 58.896 38.462 0.00 0.00 0.00 3.01
670 799 4.233789 TCACACAAACAACTCAACAAAGC 58.766 39.130 0.00 0.00 0.00 3.51
673 802 3.300590 CACAAACAACTCAACAAAGCGTC 59.699 43.478 0.00 0.00 0.00 5.19
674 803 2.844122 AACAACTCAACAAAGCGTCC 57.156 45.000 0.00 0.00 0.00 4.79
675 804 1.021968 ACAACTCAACAAAGCGTCCC 58.978 50.000 0.00 0.00 0.00 4.46
677 806 0.182775 AACTCAACAAAGCGTCCCCT 59.817 50.000 0.00 0.00 0.00 4.79
678 807 1.053424 ACTCAACAAAGCGTCCCCTA 58.947 50.000 0.00 0.00 0.00 3.53
680 809 2.158726 ACTCAACAAAGCGTCCCCTAAA 60.159 45.455 0.00 0.00 0.00 1.85
681 810 2.882137 CTCAACAAAGCGTCCCCTAAAA 59.118 45.455 0.00 0.00 0.00 1.52
699 828 1.902840 AAAAACAAGTGAACACGGCG 58.097 45.000 4.80 4.80 36.20 6.46
700 829 0.806241 AAAACAAGTGAACACGGCGT 59.194 45.000 6.77 6.77 36.20 5.68
701 830 1.654317 AAACAAGTGAACACGGCGTA 58.346 45.000 14.22 0.00 36.20 4.42
702 831 1.214367 AACAAGTGAACACGGCGTAG 58.786 50.000 14.22 10.19 36.20 3.51
703 832 0.599204 ACAAGTGAACACGGCGTAGG 60.599 55.000 14.22 3.48 36.20 3.18
724 853 2.163613 GCCGAATACCTGAAACCAAAGG 59.836 50.000 0.00 0.00 39.65 3.11
789 919 1.133253 CGGCAACAATCGCACTCAG 59.867 57.895 0.00 0.00 0.00 3.35
790 920 1.291184 CGGCAACAATCGCACTCAGA 61.291 55.000 0.00 0.00 0.00 3.27
791 921 0.166814 GGCAACAATCGCACTCAGAC 59.833 55.000 0.00 0.00 0.00 3.51
792 922 1.151668 GCAACAATCGCACTCAGACT 58.848 50.000 0.00 0.00 0.00 3.24
793 923 1.127582 GCAACAATCGCACTCAGACTC 59.872 52.381 0.00 0.00 0.00 3.36
794 924 2.407090 CAACAATCGCACTCAGACTCA 58.593 47.619 0.00 0.00 0.00 3.41
801 931 0.387878 GCACTCAGACTCACTCACCG 60.388 60.000 0.00 0.00 0.00 4.94
807 937 2.997897 ACTCACTCACCGCCCCTC 60.998 66.667 0.00 0.00 0.00 4.30
994 1126 0.387202 ATCTCGCCGGAACATCTGAG 59.613 55.000 5.05 0.00 0.00 3.35
999 1135 1.372087 GCCGGAACATCTGAGGCAAG 61.372 60.000 5.05 0.00 46.48 4.01
1374 1510 0.109272 TCGCGCTCAAGAAGGTACTG 60.109 55.000 5.56 0.00 40.86 2.74
1403 1541 1.500783 CCCCCTGCTTCCTTCTTCCA 61.501 60.000 0.00 0.00 0.00 3.53
1433 1586 8.338259 CGAATTTGTGGTCCTTTAATCAGATAG 58.662 37.037 0.00 0.00 0.00 2.08
1434 1587 9.178758 GAATTTGTGGTCCTTTAATCAGATAGT 57.821 33.333 0.00 0.00 0.00 2.12
1503 1658 0.317770 AATTGCTGCAAACGACCACG 60.318 50.000 20.06 0.00 45.75 4.94
1525 1697 5.291128 ACGGATAAGTAACAAAGAATCGCAG 59.709 40.000 0.00 0.00 0.00 5.18
1536 1708 0.738975 GAATCGCAGTTAAAGGGCCC 59.261 55.000 16.46 16.46 0.00 5.80
1541 1713 1.381076 CAGTTAAAGGGCCCGGGAA 59.619 57.895 29.31 5.00 0.00 3.97
1571 1743 1.809651 GCCAGAGCTTGATCCTAGCAC 60.810 57.143 16.48 11.44 41.11 4.40
1574 1746 3.005684 CCAGAGCTTGATCCTAGCACTAG 59.994 52.174 16.48 7.31 41.11 2.57
1575 1747 2.627699 AGAGCTTGATCCTAGCACTAGC 59.372 50.000 16.48 0.00 41.11 3.42
1597 1779 0.388659 AAAATGGCTGTGCGCTTTGA 59.611 45.000 9.73 0.00 39.13 2.69
1602 1784 0.524180 GGCTGTGCGCTTTGAATAGC 60.524 55.000 9.73 6.93 39.13 2.97
1617 1799 3.376234 TGAATAGCTGTGCATTTGAGAGC 59.624 43.478 0.00 0.00 0.00 4.09
1618 1800 1.362768 TAGCTGTGCATTTGAGAGCG 58.637 50.000 0.00 0.00 34.75 5.03
1619 1801 0.321034 AGCTGTGCATTTGAGAGCGA 60.321 50.000 0.00 0.00 34.75 4.93
1620 1802 0.179205 GCTGTGCATTTGAGAGCGAC 60.179 55.000 0.00 0.00 0.00 5.19
1674 1856 2.174424 GGAGAAGATGAAATGGGAGGCT 59.826 50.000 0.00 0.00 0.00 4.58
1723 1906 4.397730 TGTTCGATGTGTTCATTTATGGGG 59.602 41.667 0.00 0.00 34.06 4.96
1724 1907 3.550820 TCGATGTGTTCATTTATGGGGG 58.449 45.455 0.00 0.00 34.06 5.40
1743 1926 3.134879 TGGTCCACCACGACACTC 58.865 61.111 0.00 0.00 42.01 3.51
1744 1927 2.342648 GGTCCACCACGACACTCC 59.657 66.667 0.00 0.00 34.24 3.85
1745 1928 2.207924 GGTCCACCACGACACTCCT 61.208 63.158 0.00 0.00 34.24 3.69
1746 1929 1.006102 GTCCACCACGACACTCCTG 60.006 63.158 0.00 0.00 32.74 3.86
1747 1930 2.357517 CCACCACGACACTCCTGC 60.358 66.667 0.00 0.00 0.00 4.85
1748 1931 2.734723 CACCACGACACTCCTGCG 60.735 66.667 0.00 0.00 0.00 5.18
1749 1932 3.224324 ACCACGACACTCCTGCGT 61.224 61.111 0.00 0.00 39.04 5.24
1750 1933 1.900016 ACCACGACACTCCTGCGTA 60.900 57.895 0.00 0.00 36.37 4.42
1751 1934 1.248785 ACCACGACACTCCTGCGTAT 61.249 55.000 0.00 0.00 36.37 3.06
1752 1935 0.108804 CCACGACACTCCTGCGTATT 60.109 55.000 0.00 0.00 36.37 1.89
1753 1936 0.992072 CACGACACTCCTGCGTATTG 59.008 55.000 0.00 0.00 36.37 1.90
1754 1937 0.736325 ACGACACTCCTGCGTATTGC 60.736 55.000 0.00 0.00 46.70 3.56
1755 1938 0.458543 CGACACTCCTGCGTATTGCT 60.459 55.000 0.00 0.00 46.63 3.91
1756 1939 1.002366 GACACTCCTGCGTATTGCTG 58.998 55.000 0.00 0.00 46.63 4.41
1757 1940 0.608130 ACACTCCTGCGTATTGCTGA 59.392 50.000 0.00 0.00 46.63 4.26
1830 2018 6.047511 AGGATAGTTATATTCTGCTGCCAG 57.952 41.667 0.00 0.00 40.54 4.85
1839 2027 2.680312 TCTGCTGCCAGATGTAGTTC 57.320 50.000 0.00 0.00 42.98 3.01
1842 2030 1.339055 TGCTGCCAGATGTAGTTCACC 60.339 52.381 0.00 0.00 0.00 4.02
1844 2032 2.625737 CTGCCAGATGTAGTTCACCAG 58.374 52.381 0.00 0.00 0.00 4.00
1846 2034 2.371841 TGCCAGATGTAGTTCACCAGTT 59.628 45.455 0.00 0.00 0.00 3.16
1848 2036 2.744202 CCAGATGTAGTTCACCAGTTGC 59.256 50.000 0.00 0.00 0.00 4.17
1849 2037 3.557898 CCAGATGTAGTTCACCAGTTGCT 60.558 47.826 0.00 0.00 0.00 3.91
1850 2038 4.322725 CCAGATGTAGTTCACCAGTTGCTA 60.323 45.833 0.00 0.00 0.00 3.49
1851 2039 4.627467 CAGATGTAGTTCACCAGTTGCTAC 59.373 45.833 0.00 0.00 34.35 3.58
1870 2067 5.186198 GCTACTGGAACCATGTTATGAGTT 58.814 41.667 0.00 0.00 0.00 3.01
1907 2104 4.026744 TCTCTAAGCATGCTGTAGGAACT 58.973 43.478 23.48 5.10 46.37 3.01
1913 2110 3.012518 GCATGCTGTAGGAACTGAATGT 58.987 45.455 11.37 0.00 40.85 2.71
1914 2111 3.441572 GCATGCTGTAGGAACTGAATGTT 59.558 43.478 11.37 0.00 40.85 2.71
1918 2116 5.185454 TGCTGTAGGAACTGAATGTTATGG 58.815 41.667 0.00 0.00 41.52 2.74
1931 2129 1.746787 TGTTATGGCAATGCAGAGCTG 59.253 47.619 7.79 0.00 0.00 4.24
1943 2141 1.220529 CAGAGCTGTTGACTTTGCGA 58.779 50.000 0.00 0.00 0.00 5.10
1950 2148 3.791789 GCTGTTGACTTTGCGAAACATGA 60.792 43.478 0.00 0.00 32.47 3.07
1975 2174 4.470462 GTTGCAATCTTGTGAGCTAACTG 58.530 43.478 0.59 0.00 0.00 3.16
1995 2194 6.347859 ACTGGACAAGTTGGTTTTGTAAAA 57.652 33.333 7.96 0.00 38.78 1.52
1998 2197 6.391537 TGGACAAGTTGGTTTTGTAAAACTC 58.608 36.000 16.94 9.71 45.70 3.01
2001 2200 6.394809 ACAAGTTGGTTTTGTAAAACTCCTG 58.605 36.000 16.94 11.21 45.70 3.86
2002 2201 5.006153 AGTTGGTTTTGTAAAACTCCTGC 57.994 39.130 16.94 4.11 45.70 4.85
2004 2203 2.359531 TGGTTTTGTAAAACTCCTGCCG 59.640 45.455 16.94 0.00 45.70 5.69
2005 2204 2.619646 GGTTTTGTAAAACTCCTGCCGA 59.380 45.455 16.94 0.00 45.70 5.54
2008 2207 1.448985 TGTAAAACTCCTGCCGATGC 58.551 50.000 0.00 0.00 38.26 3.91
2019 2218 2.512286 CCGATGCGTGCTGGATGT 60.512 61.111 0.00 0.00 0.00 3.06
2055 2260 6.073711 TGTCGATAATAGCTGTCGAGAACTAG 60.074 42.308 13.22 0.00 44.01 2.57
2058 2263 7.226128 TCGATAATAGCTGTCGAGAACTAGAAA 59.774 37.037 0.00 0.00 39.22 2.52
2078 2283 2.715749 TGACATGGTCAATAGCAGGG 57.284 50.000 0.00 0.00 39.78 4.45
2095 2300 2.700897 CAGGGTGAGGATTGTAGGTAGG 59.299 54.545 0.00 0.00 0.00 3.18
2160 2365 4.080526 TCCACTGGAGCCTTTATTACTTCC 60.081 45.833 0.00 0.00 0.00 3.46
2279 2500 4.569761 CATCATTTGATGGCTCCTGAAG 57.430 45.455 11.88 0.00 46.09 3.02
2280 2501 3.726557 TCATTTGATGGCTCCTGAAGT 57.273 42.857 0.00 0.00 0.00 3.01
2281 2502 4.038271 TCATTTGATGGCTCCTGAAGTT 57.962 40.909 0.00 0.00 0.00 2.66
2282 2503 4.012374 TCATTTGATGGCTCCTGAAGTTC 58.988 43.478 0.00 0.00 0.00 3.01
2283 2504 3.507162 TTTGATGGCTCCTGAAGTTCA 57.493 42.857 5.25 5.25 0.00 3.18
2284 2505 3.726557 TTGATGGCTCCTGAAGTTCAT 57.273 42.857 5.91 0.00 0.00 2.57
2285 2506 3.272574 TGATGGCTCCTGAAGTTCATC 57.727 47.619 5.91 0.00 37.82 2.92
2286 2507 2.092753 TGATGGCTCCTGAAGTTCATCC 60.093 50.000 5.91 6.37 37.17 3.51
2287 2508 0.250234 TGGCTCCTGAAGTTCATCCG 59.750 55.000 5.91 0.00 0.00 4.18
2288 2509 1.092345 GGCTCCTGAAGTTCATCCGC 61.092 60.000 5.91 8.67 0.00 5.54
2289 2510 1.424493 GCTCCTGAAGTTCATCCGCG 61.424 60.000 5.91 0.00 0.00 6.46
2290 2511 0.173481 CTCCTGAAGTTCATCCGCGA 59.827 55.000 8.23 0.00 0.00 5.87
2291 2512 0.824109 TCCTGAAGTTCATCCGCGAT 59.176 50.000 8.23 0.00 0.00 4.58
2292 2513 1.207089 TCCTGAAGTTCATCCGCGATT 59.793 47.619 8.23 0.00 0.00 3.34
2293 2514 2.429250 TCCTGAAGTTCATCCGCGATTA 59.571 45.455 8.23 0.00 0.00 1.75
2294 2515 3.069586 TCCTGAAGTTCATCCGCGATTAT 59.930 43.478 8.23 0.00 0.00 1.28
2295 2516 3.430218 CCTGAAGTTCATCCGCGATTATC 59.570 47.826 8.23 0.00 0.00 1.75
2296 2517 3.390135 TGAAGTTCATCCGCGATTATCC 58.610 45.455 8.23 0.00 0.00 2.59
2297 2518 3.069586 TGAAGTTCATCCGCGATTATCCT 59.930 43.478 8.23 0.00 0.00 3.24
2298 2519 3.032017 AGTTCATCCGCGATTATCCTG 57.968 47.619 8.23 0.00 0.00 3.86
2307 2528 4.038763 TCCGCGATTATCCTGTAAGTTCAT 59.961 41.667 8.23 0.00 0.00 2.57
2416 2737 5.412526 TTGTCGTTTGTTGATGTCCTTAC 57.587 39.130 0.00 0.00 0.00 2.34
2451 2772 9.017509 TCCTGGTATGTAAATTAGTATACTCGG 57.982 37.037 9.12 0.00 0.00 4.63
2452 2773 8.800332 CCTGGTATGTAAATTAGTATACTCGGT 58.200 37.037 9.12 0.00 0.00 4.69
2535 2857 7.797123 CCGATTTAAAACTTTGTGTGAGTAGAC 59.203 37.037 0.00 0.00 0.00 2.59
2559 2881 0.040603 GTGCAAGCACAGACAAGCTC 60.041 55.000 19.47 0.00 45.53 4.09
2575 2898 2.060275 AGCTCCATGCATTATCTCCCA 58.940 47.619 0.00 0.00 45.94 4.37
2625 2948 5.105595 ACAGCCTTTGAGCCATTATTTTCTC 60.106 40.000 0.00 0.00 0.00 2.87
2716 3043 4.569162 TCGCCAAGTATTTTCAGTATTCCG 59.431 41.667 0.00 0.00 0.00 4.30
2731 3058 6.540551 TCAGTATTCCGCTAAACAATTGCATA 59.459 34.615 5.05 0.00 0.00 3.14
2816 3145 3.633361 CCAGGGTGTTGGTTCTCTC 57.367 57.895 0.00 0.00 33.38 3.20
2817 3146 1.059913 CCAGGGTGTTGGTTCTCTCT 58.940 55.000 0.00 0.00 33.38 3.10
2818 3147 1.002544 CCAGGGTGTTGGTTCTCTCTC 59.997 57.143 0.00 0.00 33.38 3.20
2819 3148 1.974236 CAGGGTGTTGGTTCTCTCTCT 59.026 52.381 0.00 0.00 0.00 3.10
2820 3149 2.028567 CAGGGTGTTGGTTCTCTCTCTC 60.029 54.545 0.00 0.00 0.00 3.20
2822 3151 2.232696 GGGTGTTGGTTCTCTCTCTCTC 59.767 54.545 0.00 0.00 0.00 3.20
2824 3153 3.192633 GGTGTTGGTTCTCTCTCTCTCTC 59.807 52.174 0.00 0.00 0.00 3.20
2825 3154 4.079253 GTGTTGGTTCTCTCTCTCTCTCT 58.921 47.826 0.00 0.00 0.00 3.10
2826 3155 4.156008 GTGTTGGTTCTCTCTCTCTCTCTC 59.844 50.000 0.00 0.00 0.00 3.20
2828 3157 4.487714 TGGTTCTCTCTCTCTCTCTCTC 57.512 50.000 0.00 0.00 0.00 3.20
2829 3158 4.104086 TGGTTCTCTCTCTCTCTCTCTCT 58.896 47.826 0.00 0.00 0.00 3.10
2830 3159 4.162320 TGGTTCTCTCTCTCTCTCTCTCTC 59.838 50.000 0.00 0.00 0.00 3.20
2831 3160 4.407296 GGTTCTCTCTCTCTCTCTCTCTCT 59.593 50.000 0.00 0.00 0.00 3.10
2832 3161 5.452636 GGTTCTCTCTCTCTCTCTCTCTCTC 60.453 52.000 0.00 0.00 0.00 3.20
2834 3163 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2835 3164 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2836 3165 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2837 3166 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2838 3167 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2839 3168 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2840 3169 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
2842 3171 6.441924 TCTCTCTCTCTCTCTCTCTCTCTTTT 59.558 42.308 0.00 0.00 0.00 2.27
2843 3172 6.409704 TCTCTCTCTCTCTCTCTCTCTTTTG 58.590 44.000 0.00 0.00 0.00 2.44
2844 3173 6.213397 TCTCTCTCTCTCTCTCTCTCTTTTGA 59.787 42.308 0.00 0.00 0.00 2.69
2859 3188 5.165961 TCTTTTGAGATCTAGGGTGTTGG 57.834 43.478 0.00 0.00 0.00 3.77
2860 3189 4.597507 TCTTTTGAGATCTAGGGTGTTGGT 59.402 41.667 0.00 0.00 0.00 3.67
2861 3190 4.993705 TTTGAGATCTAGGGTGTTGGTT 57.006 40.909 0.00 0.00 0.00 3.67
2916 3245 0.670706 TTTGTTGGCATGCGCTGTTA 59.329 45.000 12.44 0.00 38.60 2.41
2918 3247 1.511887 GTTGGCATGCGCTGTTACG 60.512 57.895 12.44 0.00 38.60 3.18
2939 3268 6.313744 ACGTTTGGTTTCCTCTTATTTCTG 57.686 37.500 0.00 0.00 0.00 3.02
2950 3279 7.004555 TCCTCTTATTTCTGCTTGTCAAGTA 57.995 36.000 14.03 8.76 0.00 2.24
2987 3316 7.771826 CCTTCCAACCTCCGTAAAGAAATATAA 59.228 37.037 0.00 0.00 0.00 0.98
2990 3319 8.202137 TCCAACCTCCGTAAAGAAATATAAGAG 58.798 37.037 0.00 0.00 0.00 2.85
2992 3321 6.214399 ACCTCCGTAAAGAAATATAAGAGCG 58.786 40.000 0.00 0.00 0.00 5.03
2993 3322 6.040166 ACCTCCGTAAAGAAATATAAGAGCGA 59.960 38.462 0.00 0.00 0.00 4.93
3109 3441 0.472044 TTACCTGTGAGCTGGTTGCA 59.528 50.000 0.00 0.00 43.21 4.08
3134 3470 8.919661 CAGTTTTTCTTCTTCAAAGATTATGCC 58.080 33.333 0.00 0.00 34.49 4.40
3145 3481 9.390795 CTTCAAAGATTATGCCTCAAAATATCG 57.609 33.333 0.00 0.00 0.00 2.92
3293 3660 1.135333 GGAGGCTTCCTGTACTTCTCG 59.865 57.143 7.80 0.00 40.58 4.04
3400 3767 2.666508 ACACAAGTGTAGATTTAGCGCG 59.333 45.455 0.00 0.00 42.90 6.86
3485 3852 2.176045 TCACCTCTCCGCATACAGAAA 58.824 47.619 0.00 0.00 0.00 2.52
3637 4004 8.440833 GTTGCTAAATATGTACTTCGTCTGTTT 58.559 33.333 0.00 0.00 0.00 2.83
3700 4429 3.499072 CGTCTTATAATTTGGGACGCG 57.501 47.619 3.53 3.53 41.99 6.01
3724 4458 0.114168 AATTTGCCACCAGCCTACCA 59.886 50.000 0.00 0.00 42.71 3.25
3725 4459 0.323725 ATTTGCCACCAGCCTACCAG 60.324 55.000 0.00 0.00 42.71 4.00
3728 4462 1.207488 TGCCACCAGCCTACCAGAAT 61.207 55.000 0.00 0.00 42.71 2.40
3734 4468 3.197766 CACCAGCCTACCAGAATGTCTTA 59.802 47.826 0.00 0.00 0.00 2.10
3831 4817 3.132467 GGGTAGGCAGACTAAGTTACTGG 59.868 52.174 0.00 0.00 32.37 4.00
3875 4861 1.037030 TTTGGGATTCGCCATGGCTC 61.037 55.000 33.07 23.45 38.95 4.70
3988 4974 2.137528 TGAGTTCGCCACCCTGTGA 61.138 57.895 0.00 0.00 35.23 3.58
4028 5014 4.151335 GCATAAACCTCGAGCATGATACTG 59.849 45.833 6.99 0.00 0.00 2.74
4030 5016 4.679373 AAACCTCGAGCATGATACTGAT 57.321 40.909 6.99 0.00 0.00 2.90
4032 5018 2.961741 ACCTCGAGCATGATACTGATGT 59.038 45.455 6.99 0.00 0.00 3.06
4105 6684 1.531602 GGTGCAGTTTGAGGGGCTT 60.532 57.895 0.00 0.00 0.00 4.35
4106 6685 1.662044 GTGCAGTTTGAGGGGCTTG 59.338 57.895 0.00 0.00 0.00 4.01
4141 6721 4.518970 TCACTTAAGACATTTGGAAGGTGC 59.481 41.667 10.09 0.00 0.00 5.01
4166 6747 2.755103 CACCCCCTAAATGCAAGTTCTC 59.245 50.000 0.00 0.00 0.00 2.87
4179 6760 3.005155 GCAAGTTCTCTGCTTGGTTGATT 59.995 43.478 7.09 0.00 42.44 2.57
4191 6772 7.395772 TCTGCTTGGTTGATTATCCACAAATAA 59.604 33.333 0.00 0.00 33.12 1.40
4224 6805 4.202388 GGTCTATAGGCCCCATCGTAAAAA 60.202 45.833 12.76 0.00 0.00 1.94
4259 6840 2.430332 CCTCTTTGCAACCAAGTCCAAA 59.570 45.455 0.00 0.00 31.52 3.28
4266 6847 3.525268 CAACCAAGTCCAAAAGTTGCT 57.475 42.857 0.00 0.00 37.04 3.91
4271 6852 5.063880 ACCAAGTCCAAAAGTTGCTAGTAG 58.936 41.667 0.00 0.00 37.04 2.57
4272 6853 5.163237 ACCAAGTCCAAAAGTTGCTAGTAGA 60.163 40.000 0.00 0.00 37.04 2.59
4273 6854 5.940470 CCAAGTCCAAAAGTTGCTAGTAGAT 59.060 40.000 0.00 0.00 37.04 1.98
4274 6855 6.128172 CCAAGTCCAAAAGTTGCTAGTAGATG 60.128 42.308 0.00 0.00 37.04 2.90
4275 6856 6.115448 AGTCCAAAAGTTGCTAGTAGATGT 57.885 37.500 0.00 0.00 0.00 3.06
4276 6857 6.534634 AGTCCAAAAGTTGCTAGTAGATGTT 58.465 36.000 0.00 0.00 0.00 2.71
4277 6858 6.428159 AGTCCAAAAGTTGCTAGTAGATGTTG 59.572 38.462 0.00 0.00 0.00 3.33
4278 6859 6.204882 GTCCAAAAGTTGCTAGTAGATGTTGT 59.795 38.462 0.00 0.00 0.00 3.32
4279 6860 6.770785 TCCAAAAGTTGCTAGTAGATGTTGTT 59.229 34.615 0.00 0.00 0.00 2.83
4280 6861 7.934665 TCCAAAAGTTGCTAGTAGATGTTGTTA 59.065 33.333 0.00 0.00 0.00 2.41
4281 6862 8.015658 CCAAAAGTTGCTAGTAGATGTTGTTAC 58.984 37.037 0.00 0.00 0.00 2.50
4282 6863 7.668525 AAAGTTGCTAGTAGATGTTGTTACC 57.331 36.000 0.00 0.00 0.00 2.85
4283 6864 5.731591 AGTTGCTAGTAGATGTTGTTACCC 58.268 41.667 0.00 0.00 0.00 3.69
4313 6894 4.072131 GTGTGGAAAGAGGTCAATGCTTA 58.928 43.478 0.00 0.00 0.00 3.09
4318 6899 2.593346 AGAGGTCAATGCTTAGCTCG 57.407 50.000 5.60 0.00 43.36 5.03
4335 6916 4.987832 AGCTCGGATTAAGCGATAGTATG 58.012 43.478 0.00 0.00 44.59 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.308866 CAGAAAGGAAGGGGAAAGCCTA 59.691 50.000 0.00 0.00 0.00 3.93
1 2 1.076187 CAGAAAGGAAGGGGAAAGCCT 59.924 52.381 0.00 0.00 0.00 4.58
2 3 1.550327 CAGAAAGGAAGGGGAAAGCC 58.450 55.000 0.00 0.00 0.00 4.35
3 4 1.550327 CCAGAAAGGAAGGGGAAAGC 58.450 55.000 0.00 0.00 41.22 3.51
4 5 1.203050 TGCCAGAAAGGAAGGGGAAAG 60.203 52.381 0.00 0.00 41.22 2.62
5 6 0.856982 TGCCAGAAAGGAAGGGGAAA 59.143 50.000 0.00 0.00 41.22 3.13
6 7 1.084018 ATGCCAGAAAGGAAGGGGAA 58.916 50.000 0.00 0.00 41.22 3.97
7 8 1.084018 AATGCCAGAAAGGAAGGGGA 58.916 50.000 0.00 0.00 41.22 4.81
8 9 2.826674 TAATGCCAGAAAGGAAGGGG 57.173 50.000 0.00 0.00 41.22 4.79
9 10 2.363359 GCATAATGCCAGAAAGGAAGGG 59.637 50.000 0.00 0.00 41.22 3.95
10 11 3.025978 TGCATAATGCCAGAAAGGAAGG 58.974 45.455 0.00 0.00 44.23 3.46
11 12 3.698040 ACTGCATAATGCCAGAAAGGAAG 59.302 43.478 1.20 0.00 44.23 3.46
12 13 3.700538 ACTGCATAATGCCAGAAAGGAA 58.299 40.909 1.20 0.00 44.23 3.36
13 14 3.370840 ACTGCATAATGCCAGAAAGGA 57.629 42.857 1.20 0.00 44.23 3.36
14 15 4.460948 AAACTGCATAATGCCAGAAAGG 57.539 40.909 1.20 0.00 44.23 3.11
15 16 6.199937 ACTAAACTGCATAATGCCAGAAAG 57.800 37.500 1.20 0.00 44.23 2.62
16 17 5.125417 GGACTAAACTGCATAATGCCAGAAA 59.875 40.000 1.20 0.00 44.23 2.52
17 18 4.640201 GGACTAAACTGCATAATGCCAGAA 59.360 41.667 1.20 0.00 44.23 3.02
18 19 4.199310 GGACTAAACTGCATAATGCCAGA 58.801 43.478 1.20 0.00 44.23 3.86
19 20 3.947196 TGGACTAAACTGCATAATGCCAG 59.053 43.478 0.00 0.00 44.23 4.85
20 21 3.694072 GTGGACTAAACTGCATAATGCCA 59.306 43.478 0.00 0.00 44.23 4.92
21 22 3.694072 TGTGGACTAAACTGCATAATGCC 59.306 43.478 0.00 0.00 44.23 4.40
22 23 4.635765 TCTGTGGACTAAACTGCATAATGC 59.364 41.667 0.00 0.00 45.29 3.56
23 24 6.932356 ATCTGTGGACTAAACTGCATAATG 57.068 37.500 0.00 0.00 0.00 1.90
24 25 7.564793 TGTATCTGTGGACTAAACTGCATAAT 58.435 34.615 0.00 0.00 0.00 1.28
25 26 6.941857 TGTATCTGTGGACTAAACTGCATAA 58.058 36.000 0.00 0.00 0.00 1.90
26 27 6.538945 TGTATCTGTGGACTAAACTGCATA 57.461 37.500 0.00 0.00 0.00 3.14
27 28 5.420725 TGTATCTGTGGACTAAACTGCAT 57.579 39.130 0.00 0.00 0.00 3.96
28 29 4.882842 TGTATCTGTGGACTAAACTGCA 57.117 40.909 0.00 0.00 0.00 4.41
29 30 5.294552 GGATTGTATCTGTGGACTAAACTGC 59.705 44.000 0.00 0.00 0.00 4.40
30 31 6.406370 TGGATTGTATCTGTGGACTAAACTG 58.594 40.000 0.00 0.00 0.00 3.16
31 32 6.620877 TGGATTGTATCTGTGGACTAAACT 57.379 37.500 0.00 0.00 0.00 2.66
32 33 7.865706 AATGGATTGTATCTGTGGACTAAAC 57.134 36.000 0.00 0.00 0.00 2.01
33 34 8.328758 AGAAATGGATTGTATCTGTGGACTAAA 58.671 33.333 0.00 0.00 0.00 1.85
34 35 7.861629 AGAAATGGATTGTATCTGTGGACTAA 58.138 34.615 0.00 0.00 0.00 2.24
35 36 7.437713 AGAAATGGATTGTATCTGTGGACTA 57.562 36.000 0.00 0.00 0.00 2.59
36 37 6.319048 AGAAATGGATTGTATCTGTGGACT 57.681 37.500 0.00 0.00 0.00 3.85
37 38 7.121168 TCAAAGAAATGGATTGTATCTGTGGAC 59.879 37.037 0.00 0.00 0.00 4.02
38 39 7.174413 TCAAAGAAATGGATTGTATCTGTGGA 58.826 34.615 0.00 0.00 0.00 4.02
39 40 7.395190 TCAAAGAAATGGATTGTATCTGTGG 57.605 36.000 0.00 0.00 0.00 4.17
47 48 9.358406 TGCATCTATATCAAAGAAATGGATTGT 57.642 29.630 0.00 0.00 0.00 2.71
61 62 9.239551 ACCGTTACTAAGTATGCATCTATATCA 57.760 33.333 0.19 0.00 0.00 2.15
62 63 9.504710 CACCGTTACTAAGTATGCATCTATATC 57.495 37.037 0.19 0.00 0.00 1.63
63 64 8.467598 CCACCGTTACTAAGTATGCATCTATAT 58.532 37.037 0.19 0.00 0.00 0.86
64 65 7.449395 ACCACCGTTACTAAGTATGCATCTATA 59.551 37.037 0.19 0.00 0.00 1.31
65 66 6.267014 ACCACCGTTACTAAGTATGCATCTAT 59.733 38.462 0.19 0.00 0.00 1.98
66 67 5.595542 ACCACCGTTACTAAGTATGCATCTA 59.404 40.000 0.19 0.00 0.00 1.98
67 68 4.404715 ACCACCGTTACTAAGTATGCATCT 59.595 41.667 0.19 0.00 0.00 2.90
68 69 4.690122 ACCACCGTTACTAAGTATGCATC 58.310 43.478 0.19 0.00 0.00 3.91
69 70 4.748277 ACCACCGTTACTAAGTATGCAT 57.252 40.909 3.79 3.79 0.00 3.96
70 71 4.540359 AACCACCGTTACTAAGTATGCA 57.460 40.909 0.00 0.00 0.00 3.96
71 72 8.822652 ATATAAACCACCGTTACTAAGTATGC 57.177 34.615 0.00 0.00 0.00 3.14
75 76 8.949177 CCAAAATATAAACCACCGTTACTAAGT 58.051 33.333 0.00 0.00 0.00 2.24
76 77 8.949177 ACCAAAATATAAACCACCGTTACTAAG 58.051 33.333 0.00 0.00 0.00 2.18
77 78 8.860780 ACCAAAATATAAACCACCGTTACTAA 57.139 30.769 0.00 0.00 0.00 2.24
78 79 8.728833 CAACCAAAATATAAACCACCGTTACTA 58.271 33.333 0.00 0.00 0.00 1.82
79 80 7.231115 ACAACCAAAATATAAACCACCGTTACT 59.769 33.333 0.00 0.00 0.00 2.24
80 81 7.326547 CACAACCAAAATATAAACCACCGTTAC 59.673 37.037 0.00 0.00 0.00 2.50
91 92 7.592938 CAGAACAGAGCACAACCAAAATATAA 58.407 34.615 0.00 0.00 0.00 0.98
109 110 1.242076 CCACCAAAGAGGCAGAACAG 58.758 55.000 0.00 0.00 43.14 3.16
148 149 2.930040 GCACATACAGAACTGCACGTAT 59.070 45.455 1.46 0.00 0.00 3.06
149 150 2.333926 GCACATACAGAACTGCACGTA 58.666 47.619 1.46 0.00 0.00 3.57
150 151 1.148310 GCACATACAGAACTGCACGT 58.852 50.000 1.46 0.00 0.00 4.49
151 152 0.443869 GGCACATACAGAACTGCACG 59.556 55.000 1.46 0.00 0.00 5.34
152 153 0.443869 CGGCACATACAGAACTGCAC 59.556 55.000 1.46 0.00 0.00 4.57
153 154 0.034756 ACGGCACATACAGAACTGCA 59.965 50.000 1.46 0.00 0.00 4.41
154 155 1.135972 CAACGGCACATACAGAACTGC 60.136 52.381 1.46 0.00 0.00 4.40
155 156 2.143122 ACAACGGCACATACAGAACTG 58.857 47.619 0.00 0.00 0.00 3.16
156 157 2.543777 ACAACGGCACATACAGAACT 57.456 45.000 0.00 0.00 0.00 3.01
157 158 2.289547 ACAACAACGGCACATACAGAAC 59.710 45.455 0.00 0.00 0.00 3.01
158 159 2.566913 ACAACAACGGCACATACAGAA 58.433 42.857 0.00 0.00 0.00 3.02
159 160 2.248280 ACAACAACGGCACATACAGA 57.752 45.000 0.00 0.00 0.00 3.41
160 161 2.803386 TGTACAACAACGGCACATACAG 59.197 45.455 0.00 0.00 0.00 2.74
161 162 2.835027 TGTACAACAACGGCACATACA 58.165 42.857 0.00 0.00 0.00 2.29
198 208 4.451900 ACTAGGAAAAACCCAGCGATATG 58.548 43.478 0.00 0.00 40.05 1.78
218 228 9.178758 GGATCAGATTAACCAAATAACAGAACT 57.821 33.333 0.00 0.00 0.00 3.01
219 229 8.122952 CGGATCAGATTAACCAAATAACAGAAC 58.877 37.037 0.00 0.00 0.00 3.01
221 231 7.561251 TCGGATCAGATTAACCAAATAACAGA 58.439 34.615 0.00 0.00 0.00 3.41
222 232 7.786178 TCGGATCAGATTAACCAAATAACAG 57.214 36.000 0.00 0.00 0.00 3.16
225 235 9.448438 CCATATCGGATCAGATTAACCAAATAA 57.552 33.333 13.72 0.00 36.56 1.40
243 335 2.341318 TAATCGCGACACCATATCGG 57.659 50.000 12.93 0.00 39.99 4.18
287 379 1.518133 GCAGAGTAGCAGCTCACGG 60.518 63.158 0.00 0.00 37.94 4.94
366 461 2.833582 TCGGAGGTCGAGGGATGC 60.834 66.667 0.00 0.00 43.74 3.91
386 486 0.889306 GCGAAGACACACCTCTACCT 59.111 55.000 0.00 0.00 0.00 3.08
395 495 4.680237 CCCCGCAGCGAAGACACA 62.680 66.667 18.75 0.00 0.00 3.72
487 593 2.433491 TCCGTCGATTTGTGCCCG 60.433 61.111 0.00 0.00 0.00 6.13
520 626 3.800685 TTGTGCACGTGGTCCCTCG 62.801 63.158 18.88 6.27 38.64 4.63
539 645 2.549754 ACTAGACTTGCATTGTGTGTGC 59.450 45.455 0.00 0.00 42.81 4.57
551 657 5.083533 AGAGCAAGATGGAACTAGACTTG 57.916 43.478 0.00 0.00 40.24 3.16
623 729 9.228949 GAATATAGGAGGAGTAGTTTACGATCA 57.771 37.037 0.00 0.00 0.00 2.92
629 735 9.483489 TTGTGTGAATATAGGAGGAGTAGTTTA 57.517 33.333 0.00 0.00 0.00 2.01
632 738 7.399191 TGTTTGTGTGAATATAGGAGGAGTAGT 59.601 37.037 0.00 0.00 0.00 2.73
634 740 7.727578 TGTTTGTGTGAATATAGGAGGAGTA 57.272 36.000 0.00 0.00 0.00 2.59
635 741 6.620877 TGTTTGTGTGAATATAGGAGGAGT 57.379 37.500 0.00 0.00 0.00 3.85
636 742 7.106239 AGTTGTTTGTGTGAATATAGGAGGAG 58.894 38.462 0.00 0.00 0.00 3.69
637 743 7.016153 AGTTGTTTGTGTGAATATAGGAGGA 57.984 36.000 0.00 0.00 0.00 3.71
638 744 6.878923 TGAGTTGTTTGTGTGAATATAGGAGG 59.121 38.462 0.00 0.00 0.00 4.30
661 790 2.642154 TTTAGGGGACGCTTTGTTGA 57.358 45.000 0.00 0.00 0.00 3.18
662 791 3.719173 TTTTTAGGGGACGCTTTGTTG 57.281 42.857 0.00 0.00 0.00 3.33
680 809 1.200484 ACGCCGTGTTCACTTGTTTTT 59.800 42.857 0.00 0.00 0.00 1.94
681 810 0.806241 ACGCCGTGTTCACTTGTTTT 59.194 45.000 0.00 0.00 0.00 2.43
683 812 1.214367 CTACGCCGTGTTCACTTGTT 58.786 50.000 0.00 0.00 0.00 2.83
684 813 0.599204 CCTACGCCGTGTTCACTTGT 60.599 55.000 0.00 0.42 0.00 3.16
685 814 1.897398 GCCTACGCCGTGTTCACTTG 61.897 60.000 0.00 0.00 0.00 3.16
686 815 1.666872 GCCTACGCCGTGTTCACTT 60.667 57.895 0.00 0.00 0.00 3.16
697 826 0.103572 TTCAGGTATTCGGCCTACGC 59.896 55.000 0.00 0.00 43.86 4.42
698 827 2.199236 GTTTCAGGTATTCGGCCTACG 58.801 52.381 0.00 0.00 46.11 3.51
699 828 2.093341 TGGTTTCAGGTATTCGGCCTAC 60.093 50.000 0.00 0.00 34.45 3.18
700 829 2.189676 TGGTTTCAGGTATTCGGCCTA 58.810 47.619 0.00 0.00 34.45 3.93
701 830 0.988832 TGGTTTCAGGTATTCGGCCT 59.011 50.000 0.00 0.00 36.66 5.19
702 831 1.828979 TTGGTTTCAGGTATTCGGCC 58.171 50.000 0.00 0.00 0.00 6.13
703 832 2.163613 CCTTTGGTTTCAGGTATTCGGC 59.836 50.000 0.00 0.00 0.00 5.54
704 833 3.681593 TCCTTTGGTTTCAGGTATTCGG 58.318 45.455 0.00 0.00 0.00 4.30
705 834 5.699097 TTTCCTTTGGTTTCAGGTATTCG 57.301 39.130 0.00 0.00 0.00 3.34
706 835 6.811954 TGTTTTCCTTTGGTTTCAGGTATTC 58.188 36.000 0.00 0.00 0.00 1.75
707 836 6.800072 TGTTTTCCTTTGGTTTCAGGTATT 57.200 33.333 0.00 0.00 0.00 1.89
708 837 6.800072 TTGTTTTCCTTTGGTTTCAGGTAT 57.200 33.333 0.00 0.00 0.00 2.73
709 838 6.351456 CCTTTGTTTTCCTTTGGTTTCAGGTA 60.351 38.462 0.00 0.00 0.00 3.08
710 839 5.487433 CTTTGTTTTCCTTTGGTTTCAGGT 58.513 37.500 0.00 0.00 0.00 4.00
711 840 4.875536 CCTTTGTTTTCCTTTGGTTTCAGG 59.124 41.667 0.00 0.00 0.00 3.86
712 841 4.332543 GCCTTTGTTTTCCTTTGGTTTCAG 59.667 41.667 0.00 0.00 0.00 3.02
713 842 4.019771 AGCCTTTGTTTTCCTTTGGTTTCA 60.020 37.500 0.00 0.00 0.00 2.69
789 919 2.997897 AGGGGCGGTGAGTGAGTC 60.998 66.667 0.00 0.00 0.00 3.36
790 920 2.997897 GAGGGGCGGTGAGTGAGT 60.998 66.667 0.00 0.00 0.00 3.41
791 921 3.775654 GGAGGGGCGGTGAGTGAG 61.776 72.222 0.00 0.00 0.00 3.51
792 922 4.316823 AGGAGGGGCGGTGAGTGA 62.317 66.667 0.00 0.00 0.00 3.41
793 923 3.775654 GAGGAGGGGCGGTGAGTG 61.776 72.222 0.00 0.00 0.00 3.51
794 924 3.547787 AAGAGGAGGGGCGGTGAGT 62.548 63.158 0.00 0.00 0.00 3.41
807 937 3.567579 TTGCCTTGCCCGGAAGAGG 62.568 63.158 0.73 7.89 0.00 3.69
874 1006 1.671379 GAGGTGTTTGTCTCGGGGC 60.671 63.158 0.00 0.00 0.00 5.80
965 1097 1.609072 TCCGGCGAGATAGATGTTGAG 59.391 52.381 9.30 0.00 0.00 3.02
1374 1510 4.043100 GCAGGGGGTGGTGGTACC 62.043 72.222 4.43 4.43 40.10 3.34
1403 1541 7.891561 TGATTAAAGGACCACAAATTCGAAAT 58.108 30.769 0.00 0.00 0.00 2.17
1433 1586 8.695284 CACGAAAACTGCTGATCTATCTTATAC 58.305 37.037 0.00 0.00 0.00 1.47
1434 1587 7.867909 CCACGAAAACTGCTGATCTATCTTATA 59.132 37.037 0.00 0.00 0.00 0.98
1435 1588 6.703607 CCACGAAAACTGCTGATCTATCTTAT 59.296 38.462 0.00 0.00 0.00 1.73
1436 1589 6.042777 CCACGAAAACTGCTGATCTATCTTA 58.957 40.000 0.00 0.00 0.00 2.10
1437 1590 4.872691 CCACGAAAACTGCTGATCTATCTT 59.127 41.667 0.00 0.00 0.00 2.40
1438 1591 4.160439 TCCACGAAAACTGCTGATCTATCT 59.840 41.667 0.00 0.00 0.00 1.98
1503 1658 6.663944 ACTGCGATTCTTTGTTACTTATCC 57.336 37.500 0.00 0.00 0.00 2.59
1525 1697 2.092267 TCTTATTCCCGGGCCCTTTAAC 60.092 50.000 22.43 0.00 0.00 2.01
1536 1708 3.367910 GCTCTGGCTAGATCTTATTCCCG 60.368 52.174 0.00 0.00 35.22 5.14
1571 1743 2.792542 GCGCACAGCCATTTTTAGCTAG 60.793 50.000 0.30 0.00 37.18 3.42
1574 1746 2.362802 GCGCACAGCCATTTTTAGC 58.637 52.632 0.30 0.00 40.81 3.09
1597 1779 2.353889 CGCTCTCAAATGCACAGCTATT 59.646 45.455 0.00 0.00 0.00 1.73
1602 1784 0.445436 GGTCGCTCTCAAATGCACAG 59.555 55.000 0.00 0.00 0.00 3.66
1617 1799 3.402691 ATGACAGCTCGCTCGGTCG 62.403 63.158 5.33 0.00 33.04 4.79
1618 1800 1.875813 CATGACAGCTCGCTCGGTC 60.876 63.158 0.00 3.27 0.00 4.79
1619 1801 2.182791 CATGACAGCTCGCTCGGT 59.817 61.111 0.00 0.00 0.00 4.69
1620 1802 3.260483 GCATGACAGCTCGCTCGG 61.260 66.667 0.00 0.00 0.00 4.63
1736 1919 0.458543 AGCAATACGCAGGAGTGTCG 60.459 55.000 0.00 0.00 46.13 4.35
1737 1920 1.002366 CAGCAATACGCAGGAGTGTC 58.998 55.000 0.00 0.00 46.13 3.67
1738 1921 0.608130 TCAGCAATACGCAGGAGTGT 59.392 50.000 0.00 0.00 46.13 3.55
1739 1922 1.725641 TTCAGCAATACGCAGGAGTG 58.274 50.000 0.00 0.00 46.13 3.51
1740 1923 2.472695 TTTCAGCAATACGCAGGAGT 57.527 45.000 0.00 0.00 46.13 3.85
1763 1946 8.518702 GCATTCAGTATCTCACAGATCAGTATA 58.481 37.037 0.00 0.00 36.20 1.47
1787 1970 2.364186 TCGGATGCCCTCTGAGCA 60.364 61.111 0.00 0.00 45.94 4.26
1819 2007 2.302733 TGAACTACATCTGGCAGCAGAA 59.697 45.455 10.34 0.00 34.56 3.02
1830 2018 4.822026 AGTAGCAACTGGTGAACTACATC 58.178 43.478 11.41 0.00 36.51 3.06
1844 2032 4.941263 TCATAACATGGTTCCAGTAGCAAC 59.059 41.667 0.00 0.00 0.00 4.17
1846 2034 4.225042 ACTCATAACATGGTTCCAGTAGCA 59.775 41.667 0.00 0.00 0.00 3.49
1848 2036 6.406370 TCAACTCATAACATGGTTCCAGTAG 58.594 40.000 0.00 0.00 0.00 2.57
1849 2037 6.367374 TCAACTCATAACATGGTTCCAGTA 57.633 37.500 0.00 0.00 0.00 2.74
1850 2038 5.241403 TCAACTCATAACATGGTTCCAGT 57.759 39.130 0.00 0.00 0.00 4.00
1851 2039 5.390885 CGTTCAACTCATAACATGGTTCCAG 60.391 44.000 0.00 0.00 0.00 3.86
1870 2067 5.067283 TGCTTAGAGATAGCATACACGTTCA 59.933 40.000 0.00 0.00 43.30 3.18
1907 2104 3.181484 GCTCTGCATTGCCATAACATTCA 60.181 43.478 6.12 0.00 0.00 2.57
1913 2110 2.133281 ACAGCTCTGCATTGCCATAA 57.867 45.000 6.12 0.00 0.00 1.90
1914 2111 1.746787 CAACAGCTCTGCATTGCCATA 59.253 47.619 6.12 0.00 0.00 2.74
1918 2116 0.879765 AGTCAACAGCTCTGCATTGC 59.120 50.000 0.46 0.46 30.47 3.56
1931 2129 3.300009 CCTCATGTTTCGCAAAGTCAAC 58.700 45.455 0.00 0.00 0.00 3.18
1943 2141 3.642848 ACAAGATTGCAACCCTCATGTTT 59.357 39.130 0.00 0.00 0.00 2.83
1950 2148 1.202976 AGCTCACAAGATTGCAACCCT 60.203 47.619 0.00 0.00 0.00 4.34
2001 2200 3.945434 CATCCAGCACGCATCGGC 61.945 66.667 0.00 0.00 0.00 5.54
2002 2201 1.647545 AAACATCCAGCACGCATCGG 61.648 55.000 0.00 0.00 0.00 4.18
2004 2203 0.804364 TCAAACATCCAGCACGCATC 59.196 50.000 0.00 0.00 0.00 3.91
2005 2204 0.523072 GTCAAACATCCAGCACGCAT 59.477 50.000 0.00 0.00 0.00 4.73
2008 2207 1.511850 TCTGTCAAACATCCAGCACG 58.488 50.000 0.00 0.00 0.00 5.34
2037 2242 6.975772 GTCATTTCTAGTTCTCGACAGCTATT 59.024 38.462 0.00 0.00 0.00 1.73
2055 2260 4.037208 CCCTGCTATTGACCATGTCATTTC 59.963 45.833 0.00 0.00 42.40 2.17
2058 2263 2.511218 ACCCTGCTATTGACCATGTCAT 59.489 45.455 0.00 0.00 42.40 3.06
2078 2283 5.839606 ACCTTATCCTACCTACAATCCTCAC 59.160 44.000 0.00 0.00 0.00 3.51
2095 2300 4.651778 TGCCACCAATAGCATACCTTATC 58.348 43.478 0.00 0.00 33.08 1.75
2160 2365 7.935755 AGATGACCTTGGAACTACATAATGATG 59.064 37.037 0.00 0.00 39.16 3.07
2203 2408 2.907458 TCACTCAGGTGATCTCAGGA 57.093 50.000 0.00 0.00 46.19 3.86
2277 2498 3.181465 ACAGGATAATCGCGGATGAACTT 60.181 43.478 6.13 0.00 0.00 2.66
2278 2499 2.365617 ACAGGATAATCGCGGATGAACT 59.634 45.455 6.13 0.00 0.00 3.01
2279 2500 2.755650 ACAGGATAATCGCGGATGAAC 58.244 47.619 6.13 0.00 0.00 3.18
2280 2501 4.038763 ACTTACAGGATAATCGCGGATGAA 59.961 41.667 6.13 0.00 0.00 2.57
2281 2502 3.572682 ACTTACAGGATAATCGCGGATGA 59.427 43.478 6.13 0.00 0.00 2.92
2282 2503 3.914312 ACTTACAGGATAATCGCGGATG 58.086 45.455 6.13 0.00 0.00 3.51
2283 2504 4.038763 TGAACTTACAGGATAATCGCGGAT 59.961 41.667 6.13 0.00 0.00 4.18
2284 2505 3.382227 TGAACTTACAGGATAATCGCGGA 59.618 43.478 6.13 0.00 0.00 5.54
2285 2506 3.713288 TGAACTTACAGGATAATCGCGG 58.287 45.455 6.13 0.00 0.00 6.46
2286 2507 4.386049 GGATGAACTTACAGGATAATCGCG 59.614 45.833 0.00 0.00 0.00 5.87
2287 2508 4.386049 CGGATGAACTTACAGGATAATCGC 59.614 45.833 0.00 0.00 0.00 4.58
2288 2509 5.769367 TCGGATGAACTTACAGGATAATCG 58.231 41.667 0.00 0.00 0.00 3.34
2289 2510 6.982852 TCTCGGATGAACTTACAGGATAATC 58.017 40.000 0.00 0.00 0.00 1.75
2290 2511 6.978674 TCTCGGATGAACTTACAGGATAAT 57.021 37.500 0.00 0.00 0.00 1.28
2291 2512 6.570692 GTTCTCGGATGAACTTACAGGATAA 58.429 40.000 10.91 0.00 42.03 1.75
2292 2513 6.145338 GTTCTCGGATGAACTTACAGGATA 57.855 41.667 10.91 0.00 42.03 2.59
2293 2514 5.012328 GTTCTCGGATGAACTTACAGGAT 57.988 43.478 10.91 0.00 42.03 3.24
2294 2515 4.451629 GTTCTCGGATGAACTTACAGGA 57.548 45.455 10.91 0.00 42.03 3.86
2307 2528 5.740290 AAAGAAGGATGTTAGTTCTCGGA 57.260 39.130 0.00 0.00 30.07 4.55
2322 2543 4.335416 TCCATGCTCCAACTTAAAGAAGG 58.665 43.478 0.00 0.00 36.95 3.46
2323 2544 5.067023 GGATCCATGCTCCAACTTAAAGAAG 59.933 44.000 6.95 0.00 34.38 2.85
2416 2737 7.765695 AATTTACATACCAGGATATTGCAGG 57.234 36.000 0.00 0.00 0.00 4.85
2445 2766 7.944729 AGTTATTGTTCCTAAGTACCGAGTA 57.055 36.000 0.00 0.00 0.00 2.59
2446 2767 6.847421 AGTTATTGTTCCTAAGTACCGAGT 57.153 37.500 0.00 0.00 0.00 4.18
2447 2768 6.534079 CCAAGTTATTGTTCCTAAGTACCGAG 59.466 42.308 0.00 0.00 34.39 4.63
2448 2769 6.400568 CCAAGTTATTGTTCCTAAGTACCGA 58.599 40.000 0.00 0.00 34.39 4.69
2450 2771 5.941647 TGCCAAGTTATTGTTCCTAAGTACC 59.058 40.000 0.00 0.00 34.39 3.34
2451 2772 7.443259 TTGCCAAGTTATTGTTCCTAAGTAC 57.557 36.000 0.00 0.00 34.39 2.73
2452 2773 6.150474 GCTTGCCAAGTTATTGTTCCTAAGTA 59.850 38.462 6.28 0.00 34.39 2.24
2453 2774 5.048013 GCTTGCCAAGTTATTGTTCCTAAGT 60.048 40.000 6.28 0.00 34.39 2.24
2458 2779 3.658757 TGCTTGCCAAGTTATTGTTCC 57.341 42.857 6.28 0.00 34.39 3.62
2535 2857 1.566563 GTCTGTGCTTGCACTGACG 59.433 57.895 33.06 18.08 41.62 4.35
2559 2881 3.251729 CGAAGTTGGGAGATAATGCATGG 59.748 47.826 0.00 0.00 0.00 3.66
2625 2948 1.770658 TCATGCATACAGAGAAGGGGG 59.229 52.381 0.00 0.00 0.00 5.40
2814 3143 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2816 3145 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2817 3146 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2818 3147 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
2819 3148 6.213397 TCAAAAGAGAGAGAGAGAGAGAGAGA 59.787 42.308 0.00 0.00 0.00 3.10
2820 3149 6.409704 TCAAAAGAGAGAGAGAGAGAGAGAG 58.590 44.000 0.00 0.00 0.00 3.20
2822 3151 6.409704 TCTCAAAAGAGAGAGAGAGAGAGAG 58.590 44.000 0.00 0.00 39.62 3.20
2824 3153 7.052873 AGATCTCAAAAGAGAGAGAGAGAGAG 58.947 42.308 1.47 0.00 46.90 3.20
2825 3154 6.962182 AGATCTCAAAAGAGAGAGAGAGAGA 58.038 40.000 1.47 0.00 46.90 3.10
2826 3155 7.443575 CCTAGATCTCAAAAGAGAGAGAGAGAG 59.556 44.444 0.00 0.00 46.90 3.20
2828 3157 6.488006 CCCTAGATCTCAAAAGAGAGAGAGAG 59.512 46.154 0.00 0.00 46.90 3.20
2829 3158 6.069088 ACCCTAGATCTCAAAAGAGAGAGAGA 60.069 42.308 0.00 0.00 46.90 3.10
2830 3159 6.039717 CACCCTAGATCTCAAAAGAGAGAGAG 59.960 46.154 0.00 0.00 46.90 3.20
2831 3160 5.890985 CACCCTAGATCTCAAAAGAGAGAGA 59.109 44.000 0.00 0.00 46.90 3.10
2832 3161 5.656416 ACACCCTAGATCTCAAAAGAGAGAG 59.344 44.000 0.00 0.00 46.90 3.20
2834 3163 5.930837 ACACCCTAGATCTCAAAAGAGAG 57.069 43.478 0.00 0.00 34.24 3.20
2835 3164 5.046304 CCAACACCCTAGATCTCAAAAGAGA 60.046 44.000 0.00 0.00 34.24 3.10
2836 3165 5.181748 CCAACACCCTAGATCTCAAAAGAG 58.818 45.833 0.00 0.00 34.24 2.85
2837 3166 4.597507 ACCAACACCCTAGATCTCAAAAGA 59.402 41.667 0.00 0.00 35.54 2.52
2838 3167 4.911390 ACCAACACCCTAGATCTCAAAAG 58.089 43.478 0.00 0.00 0.00 2.27
2839 3168 4.993705 ACCAACACCCTAGATCTCAAAA 57.006 40.909 0.00 0.00 0.00 2.44
2840 3169 4.993705 AACCAACACCCTAGATCTCAAA 57.006 40.909 0.00 0.00 0.00 2.69
2842 3171 5.964477 AGATTAACCAACACCCTAGATCTCA 59.036 40.000 0.00 0.00 0.00 3.27
2843 3172 6.487299 AGATTAACCAACACCCTAGATCTC 57.513 41.667 0.00 0.00 0.00 2.75
2844 3173 9.315363 CTATAGATTAACCAACACCCTAGATCT 57.685 37.037 0.00 0.00 0.00 2.75
2845 3174 9.091220 ACTATAGATTAACCAACACCCTAGATC 57.909 37.037 6.78 0.00 0.00 2.75
2846 3175 9.091220 GACTATAGATTAACCAACACCCTAGAT 57.909 37.037 6.78 0.00 0.00 1.98
2847 3176 8.063153 TGACTATAGATTAACCAACACCCTAGA 58.937 37.037 6.78 0.00 0.00 2.43
2848 3177 8.246430 TGACTATAGATTAACCAACACCCTAG 57.754 38.462 6.78 0.00 0.00 3.02
2850 3179 7.504926 TTGACTATAGATTAACCAACACCCT 57.495 36.000 6.78 0.00 0.00 4.34
2852 3181 8.788325 AGTTTGACTATAGATTAACCAACACC 57.212 34.615 6.78 0.00 0.00 4.16
2916 3245 5.278315 GCAGAAATAAGAGGAAACCAAACGT 60.278 40.000 0.00 0.00 0.00 3.99
2918 3247 6.332735 AGCAGAAATAAGAGGAAACCAAAC 57.667 37.500 0.00 0.00 0.00 2.93
2950 3279 3.579151 GAGGTTGGAAGGACTACTTGTCT 59.421 47.826 0.00 0.00 44.74 3.41
2959 3288 2.301009 TCTTTACGGAGGTTGGAAGGAC 59.699 50.000 0.00 0.00 0.00 3.85
2960 3289 2.612000 TCTTTACGGAGGTTGGAAGGA 58.388 47.619 0.00 0.00 0.00 3.36
2961 3290 3.412237 TTCTTTACGGAGGTTGGAAGG 57.588 47.619 0.00 0.00 0.00 3.46
2963 3292 8.542080 TCTTATATTTCTTTACGGAGGTTGGAA 58.458 33.333 0.00 0.00 0.00 3.53
2964 3293 8.081517 TCTTATATTTCTTTACGGAGGTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
2965 3294 7.041984 GCTCTTATATTTCTTTACGGAGGTTGG 60.042 40.741 0.00 0.00 0.00 3.77
2966 3295 7.306632 CGCTCTTATATTTCTTTACGGAGGTTG 60.307 40.741 0.00 0.00 0.00 3.77
2967 3296 6.700520 CGCTCTTATATTTCTTTACGGAGGTT 59.299 38.462 0.00 0.00 0.00 3.50
2987 3316 7.811117 ACTACTTTAGTGATCTAATCGCTCT 57.189 36.000 6.30 0.00 46.52 4.09
3036 3365 3.459598 TGCAAATAGCCACTCCCTCTATT 59.540 43.478 0.00 0.00 44.83 1.73
3109 3441 8.864087 AGGCATAATCTTTGAAGAAGAAAAACT 58.136 29.630 0.00 0.00 38.77 2.66
3134 3470 5.907197 AGCATTACCGACGATATTTTGAG 57.093 39.130 0.00 0.00 0.00 3.02
3145 3481 5.237344 AGCTATCAAATGAAGCATTACCGAC 59.763 40.000 15.15 0.00 38.75 4.79
3293 3660 0.997196 GAATGTACGCCTTGTCGACC 59.003 55.000 14.12 0.00 0.00 4.79
3570 3937 1.287425 CCGGCTCGAAGGATGTAAAC 58.713 55.000 0.00 0.00 0.00 2.01
3675 4042 6.032722 CGTCCCAAATTATAAGACGTTCTG 57.967 41.667 13.25 0.00 43.89 3.02
3699 4428 1.668628 GGCTGGTGGCAAATTTGTACG 60.669 52.381 19.03 8.52 44.01 3.67
3700 4429 1.618343 AGGCTGGTGGCAAATTTGTAC 59.382 47.619 19.03 16.81 44.01 2.90
3724 4458 6.895782 TCCGTCCCAAATTATAAGACATTCT 58.104 36.000 0.00 0.00 0.00 2.40
3725 4459 6.766467 ACTCCGTCCCAAATTATAAGACATTC 59.234 38.462 0.00 0.00 0.00 2.67
3728 4462 5.687166 ACTCCGTCCCAAATTATAAGACA 57.313 39.130 0.00 0.00 0.00 3.41
3734 4468 6.549433 TGTACTAACTCCGTCCCAAATTAT 57.451 37.500 0.00 0.00 0.00 1.28
3831 4817 4.389890 TTTGCCTTATTGCCATCATCAC 57.610 40.909 0.00 0.00 0.00 3.06
3854 4840 0.465287 GCCATGGCGAATCCCAAATT 59.535 50.000 23.48 0.00 38.61 1.82
3855 4841 2.126951 GCCATGGCGAATCCCAAAT 58.873 52.632 23.48 0.00 38.61 2.32
3875 4861 1.515020 CTTCAGCCTCACTCCCTCG 59.485 63.158 0.00 0.00 0.00 4.63
3932 4918 0.827507 AATTTTGCACCGTGCTCCCT 60.828 50.000 23.52 4.46 45.31 4.20
3988 4974 1.417288 TGCCGACCATCATCATCTCT 58.583 50.000 0.00 0.00 0.00 3.10
4105 6684 2.018355 TAAGTGAGGGTGTGGTAGCA 57.982 50.000 0.00 0.00 0.00 3.49
4106 6685 2.565834 TCTTAAGTGAGGGTGTGGTAGC 59.434 50.000 1.63 0.00 0.00 3.58
4141 6721 2.833121 GCATTTAGGGGGTGCCCG 60.833 66.667 0.54 0.00 46.66 6.13
4155 6736 2.283145 ACCAAGCAGAGAACTTGCAT 57.717 45.000 0.00 0.00 42.57 3.96
4166 6747 5.389859 TTTGTGGATAATCAACCAAGCAG 57.610 39.130 0.00 0.00 37.94 4.24
4179 6760 5.719085 ACCATGCAAACCTTATTTGTGGATA 59.281 36.000 13.15 0.00 32.83 2.59
4191 6772 2.158608 GGCCTATAGACCATGCAAACCT 60.159 50.000 0.00 0.00 0.00 3.50
4259 6840 6.171213 GGGTAACAACATCTACTAGCAACTT 58.829 40.000 0.00 0.00 39.74 2.66
4266 6847 7.281040 CCTAATCGGGTAACAACATCTACTA 57.719 40.000 0.00 0.00 39.74 1.82
4282 6863 2.420129 CCTCTTTCCACACCCTAATCGG 60.420 54.545 0.00 0.00 0.00 4.18
4283 6864 2.236395 ACCTCTTTCCACACCCTAATCG 59.764 50.000 0.00 0.00 0.00 3.34
4313 6894 4.142359 CCATACTATCGCTTAATCCGAGCT 60.142 45.833 0.00 0.00 38.20 4.09
4318 6899 5.044558 GCTAGCCATACTATCGCTTAATCC 58.955 45.833 2.29 0.00 34.03 3.01
4335 6916 1.452108 AGTCGCCCAAATGCTAGCC 60.452 57.895 13.29 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.