Multiple sequence alignment - TraesCS2A01G336900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G336900 chr2A 100.000 1988 0 0 820 2807 570502713 570500726 0.000000e+00 3672.0
1 TraesCS2A01G336900 chr2A 90.900 989 77 5 820 1803 570268802 570267822 0.000000e+00 1315.0
2 TraesCS2A01G336900 chr2A 100.000 589 0 0 1 589 570503532 570502944 0.000000e+00 1088.0
3 TraesCS2A01G336900 chr2A 100.000 46 0 0 2756 2801 570284580 570284535 4.980000e-13 86.1
4 TraesCS2A01G336900 chr2A 89.130 46 4 1 1951 1996 15883948 15883904 3.910000e-04 56.5
5 TraesCS2A01G336900 chr2D 91.437 1378 80 19 820 2192 419479742 419481086 0.000000e+00 1857.0
6 TraesCS2A01G336900 chr2D 92.417 989 70 1 820 1803 419673592 419674580 0.000000e+00 1406.0
7 TraesCS2A01G336900 chr2D 90.164 305 26 2 1 304 419457936 419458237 7.290000e-106 394.0
8 TraesCS2A01G336900 chr2D 96.482 199 6 1 359 556 419479493 419479691 7.500000e-86 327.0
9 TraesCS2A01G336900 chr2D 100.000 52 0 0 2756 2807 419481082 419481133 2.300000e-16 97.1
10 TraesCS2A01G336900 chr2B 91.235 1061 60 11 830 1880 491961712 491962749 0.000000e+00 1413.0
11 TraesCS2A01G336900 chr2B 92.089 986 74 3 820 1803 492087844 492088827 0.000000e+00 1386.0
12 TraesCS2A01G336900 chr2B 89.323 384 37 2 2192 2575 76077517 76077896 1.960000e-131 479.0
13 TraesCS2A01G336900 chr2B 85.938 384 46 4 1 383 491956760 491957136 1.210000e-108 403.0
14 TraesCS2A01G336900 chr2B 100.000 29 0 0 1967 1995 332335947 332335919 1.000000e-03 54.7
15 TraesCS2A01G336900 chr6A 91.119 563 47 2 2193 2754 10011240 10010680 0.000000e+00 760.0
16 TraesCS2A01G336900 chr1A 87.500 568 50 12 2193 2755 45690557 45690006 1.100000e-178 636.0
17 TraesCS2A01G336900 chr1A 90.116 172 17 0 2585 2756 61871920 61871749 1.010000e-54 224.0
18 TraesCS2A01G336900 chrUn 89.357 498 43 7 2261 2755 457444 457934 3.970000e-173 617.0
19 TraesCS2A01G336900 chrUn 89.157 498 44 7 2261 2755 385195 385685 1.850000e-171 612.0
20 TraesCS2A01G336900 chrUn 89.157 498 44 7 2261 2755 317801284 317801774 1.850000e-171 612.0
21 TraesCS2A01G336900 chrUn 88.462 52 4 2 982 1033 33171796 33171747 8.400000e-06 62.1
22 TraesCS2A01G336900 chr6B 85.263 570 58 18 2192 2755 691454865 691455414 5.250000e-157 564.0
23 TraesCS2A01G336900 chr6B 84.793 217 29 3 1 214 93645324 93645109 6.090000e-52 215.0
24 TraesCS2A01G336900 chr7D 91.123 383 32 1 2193 2575 237394712 237394332 4.140000e-143 518.0
25 TraesCS2A01G336900 chr7D 90.625 384 34 1 2192 2575 237393377 237392996 2.490000e-140 508.0
26 TraesCS2A01G336900 chr7D 80.769 156 28 2 1914 2068 149083691 149083537 1.370000e-23 121.0
27 TraesCS2A01G336900 chr7D 97.826 46 1 0 240 285 486731416 486731371 2.320000e-11 80.5
28 TraesCS2A01G336900 chr3A 92.073 164 13 0 2592 2755 54286388 54286551 6.050000e-57 231.0
29 TraesCS2A01G336900 chr3A 90.244 164 15 1 2593 2755 75626105 75625942 2.190000e-51 213.0
30 TraesCS2A01G336900 chr7B 81.949 277 37 10 2485 2755 750577613 750577344 3.640000e-54 222.0
31 TraesCS2A01G336900 chr7B 88.202 178 18 3 2580 2755 386694605 386694781 2.830000e-50 209.0
32 TraesCS2A01G336900 chr1D 92.593 54 4 0 2125 2178 316604922 316604869 8.340000e-11 78.7
33 TraesCS2A01G336900 chr5D 90.385 52 5 0 2756 2807 329766432 329766381 5.020000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G336900 chr2A 570500726 570503532 2806 True 2380.000000 3672 100.000 1 2807 2 chr2A.!!$R4 2806
1 TraesCS2A01G336900 chr2A 570267822 570268802 980 True 1315.000000 1315 90.900 820 1803 1 chr2A.!!$R2 983
2 TraesCS2A01G336900 chr2D 419673592 419674580 988 False 1406.000000 1406 92.417 820 1803 1 chr2D.!!$F2 983
3 TraesCS2A01G336900 chr2D 419479493 419481133 1640 False 760.366667 1857 95.973 359 2807 3 chr2D.!!$F3 2448
4 TraesCS2A01G336900 chr2B 491961712 491962749 1037 False 1413.000000 1413 91.235 830 1880 1 chr2B.!!$F3 1050
5 TraesCS2A01G336900 chr2B 492087844 492088827 983 False 1386.000000 1386 92.089 820 1803 1 chr2B.!!$F4 983
6 TraesCS2A01G336900 chr6A 10010680 10011240 560 True 760.000000 760 91.119 2193 2754 1 chr6A.!!$R1 561
7 TraesCS2A01G336900 chr1A 45690006 45690557 551 True 636.000000 636 87.500 2193 2755 1 chr1A.!!$R1 562
8 TraesCS2A01G336900 chr6B 691454865 691455414 549 False 564.000000 564 85.263 2192 2755 1 chr6B.!!$F1 563
9 TraesCS2A01G336900 chr7D 237392996 237394712 1716 True 513.000000 518 90.874 2192 2575 2 chr7D.!!$R3 383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.036105 TCATCACGCATGCACCTTCT 60.036 50.0 19.57 0.0 31.7 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 1944 0.598065 GGGTGAAATTGCTTCGTGCT 59.402 50.0 5.0 0.0 43.37 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.573558 CATTGCCGTTGTACCGCT 58.426 55.556 0.00 0.00 0.00 5.52
18 19 1.423845 CATTGCCGTTGTACCGCTC 59.576 57.895 0.00 0.00 0.00 5.03
19 20 2.098233 ATTGCCGTTGTACCGCTCG 61.098 57.895 0.00 0.00 0.00 5.03
20 21 2.495366 ATTGCCGTTGTACCGCTCGA 62.495 55.000 0.00 0.00 0.00 4.04
21 22 2.431260 GCCGTTGTACCGCTCGAA 60.431 61.111 0.00 0.00 0.00 3.71
22 23 2.442188 GCCGTTGTACCGCTCGAAG 61.442 63.158 0.00 0.00 0.00 3.79
23 24 1.210931 CCGTTGTACCGCTCGAAGA 59.789 57.895 0.00 0.00 0.00 2.87
36 37 2.588464 TCGAAGAGAGTGGAAGGTCT 57.412 50.000 0.00 0.00 0.00 3.85
37 38 2.438411 TCGAAGAGAGTGGAAGGTCTC 58.562 52.381 0.00 0.00 39.72 3.36
38 39 1.131504 CGAAGAGAGTGGAAGGTCTCG 59.868 57.143 0.00 0.00 43.47 4.04
39 40 2.164338 GAAGAGAGTGGAAGGTCTCGT 58.836 52.381 0.00 0.00 43.47 4.18
40 41 2.296073 AGAGAGTGGAAGGTCTCGTT 57.704 50.000 0.00 0.00 43.47 3.85
41 42 1.889829 AGAGAGTGGAAGGTCTCGTTG 59.110 52.381 0.00 0.00 43.47 4.10
42 43 1.887198 GAGAGTGGAAGGTCTCGTTGA 59.113 52.381 0.00 0.00 36.03 3.18
43 44 1.614413 AGAGTGGAAGGTCTCGTTGAC 59.386 52.381 3.42 3.42 44.63 3.18
44 45 1.614413 GAGTGGAAGGTCTCGTTGACT 59.386 52.381 10.13 0.00 44.74 3.41
45 46 2.036089 GAGTGGAAGGTCTCGTTGACTT 59.964 50.000 10.13 1.78 44.74 3.01
46 47 2.135933 GTGGAAGGTCTCGTTGACTTG 58.864 52.381 10.13 0.00 44.74 3.16
47 48 1.149148 GGAAGGTCTCGTTGACTTGC 58.851 55.000 10.13 3.05 44.74 4.01
48 49 0.784778 GAAGGTCTCGTTGACTTGCG 59.215 55.000 10.13 0.00 44.74 4.85
49 50 0.600255 AAGGTCTCGTTGACTTGCGG 60.600 55.000 10.13 0.00 44.74 5.69
50 51 2.027625 GGTCTCGTTGACTTGCGGG 61.028 63.158 10.13 0.00 44.74 6.13
51 52 2.027625 GTCTCGTTGACTTGCGGGG 61.028 63.158 4.56 0.00 42.21 5.73
52 53 3.423154 CTCGTTGACTTGCGGGGC 61.423 66.667 0.00 0.00 0.00 5.80
55 56 4.966787 GTTGACTTGCGGGGCCCA 62.967 66.667 26.86 0.00 0.00 5.36
56 57 4.659172 TTGACTTGCGGGGCCCAG 62.659 66.667 26.86 22.85 0.00 4.45
76 77 2.851534 GCCAATTGCGTTGTCTCTTAC 58.148 47.619 0.00 0.00 36.01 2.34
77 78 2.724839 GCCAATTGCGTTGTCTCTTACG 60.725 50.000 0.00 0.00 40.55 3.18
78 79 2.734606 CCAATTGCGTTGTCTCTTACGA 59.265 45.455 0.00 0.00 40.03 3.43
79 80 3.185594 CCAATTGCGTTGTCTCTTACGAA 59.814 43.478 0.00 0.00 40.03 3.85
80 81 4.142902 CCAATTGCGTTGTCTCTTACGAAT 60.143 41.667 0.00 0.00 40.03 3.34
81 82 5.382303 CAATTGCGTTGTCTCTTACGAATT 58.618 37.500 0.00 0.00 40.03 2.17
82 83 5.607119 ATTGCGTTGTCTCTTACGAATTT 57.393 34.783 0.00 0.00 40.03 1.82
83 84 4.383774 TGCGTTGTCTCTTACGAATTTG 57.616 40.909 0.00 0.00 40.03 2.32
84 85 3.805422 TGCGTTGTCTCTTACGAATTTGT 59.195 39.130 3.29 3.29 40.03 2.83
85 86 4.141680 GCGTTGTCTCTTACGAATTTGTG 58.858 43.478 8.70 0.00 40.03 3.33
86 87 4.318546 GCGTTGTCTCTTACGAATTTGTGT 60.319 41.667 8.70 0.00 40.03 3.72
87 88 5.734311 CGTTGTCTCTTACGAATTTGTGTT 58.266 37.500 8.70 0.00 40.03 3.32
88 89 5.615581 CGTTGTCTCTTACGAATTTGTGTTG 59.384 40.000 8.70 0.00 40.03 3.33
89 90 5.090652 TGTCTCTTACGAATTTGTGTTGC 57.909 39.130 8.70 0.00 0.00 4.17
90 91 4.814234 TGTCTCTTACGAATTTGTGTTGCT 59.186 37.500 8.70 0.00 0.00 3.91
91 92 5.050363 TGTCTCTTACGAATTTGTGTTGCTC 60.050 40.000 8.70 0.00 0.00 4.26
92 93 4.149922 TCTCTTACGAATTTGTGTTGCTCG 59.850 41.667 8.70 0.00 35.68 5.03
93 94 3.185594 TCTTACGAATTTGTGTTGCTCGG 59.814 43.478 8.70 0.00 33.89 4.63
94 95 0.591170 ACGAATTTGTGTTGCTCGGG 59.409 50.000 0.00 0.00 33.89 5.14
95 96 0.729140 CGAATTTGTGTTGCTCGGGC 60.729 55.000 0.00 0.00 39.26 6.13
96 97 0.388520 GAATTTGTGTTGCTCGGGCC 60.389 55.000 3.94 0.00 37.74 5.80
97 98 1.112315 AATTTGTGTTGCTCGGGCCA 61.112 50.000 3.94 0.00 37.74 5.36
98 99 0.899717 ATTTGTGTTGCTCGGGCCAT 60.900 50.000 3.94 0.00 37.74 4.40
99 100 1.523154 TTTGTGTTGCTCGGGCCATC 61.523 55.000 3.94 0.00 37.74 3.51
100 101 2.045926 GTGTTGCTCGGGCCATCT 60.046 61.111 3.94 0.00 37.74 2.90
101 102 1.675641 GTGTTGCTCGGGCCATCTT 60.676 57.895 3.94 0.00 37.74 2.40
102 103 1.074775 TGTTGCTCGGGCCATCTTT 59.925 52.632 3.94 0.00 37.74 2.52
103 104 0.326595 TGTTGCTCGGGCCATCTTTA 59.673 50.000 3.94 0.00 37.74 1.85
104 105 1.017387 GTTGCTCGGGCCATCTTTAG 58.983 55.000 3.94 0.00 37.74 1.85
105 106 0.618458 TTGCTCGGGCCATCTTTAGT 59.382 50.000 3.94 0.00 37.74 2.24
106 107 0.618458 TGCTCGGGCCATCTTTAGTT 59.382 50.000 3.94 0.00 37.74 2.24
107 108 1.004277 TGCTCGGGCCATCTTTAGTTT 59.996 47.619 3.94 0.00 37.74 2.66
108 109 1.671328 GCTCGGGCCATCTTTAGTTTC 59.329 52.381 4.39 0.00 0.00 2.78
109 110 2.939640 GCTCGGGCCATCTTTAGTTTCA 60.940 50.000 4.39 0.00 0.00 2.69
110 111 3.545703 CTCGGGCCATCTTTAGTTTCAT 58.454 45.455 4.39 0.00 0.00 2.57
111 112 3.541632 TCGGGCCATCTTTAGTTTCATC 58.458 45.455 4.39 0.00 0.00 2.92
112 113 3.054728 TCGGGCCATCTTTAGTTTCATCA 60.055 43.478 4.39 0.00 0.00 3.07
113 114 3.065371 CGGGCCATCTTTAGTTTCATCAC 59.935 47.826 4.39 0.00 0.00 3.06
114 115 3.065371 GGGCCATCTTTAGTTTCATCACG 59.935 47.826 4.39 0.00 0.00 4.35
115 116 3.487544 GGCCATCTTTAGTTTCATCACGC 60.488 47.826 0.00 0.00 0.00 5.34
116 117 3.126858 GCCATCTTTAGTTTCATCACGCA 59.873 43.478 0.00 0.00 0.00 5.24
117 118 4.201950 GCCATCTTTAGTTTCATCACGCAT 60.202 41.667 0.00 0.00 0.00 4.73
118 119 5.268544 CCATCTTTAGTTTCATCACGCATG 58.731 41.667 0.00 0.00 0.00 4.06
119 120 4.340894 TCTTTAGTTTCATCACGCATGC 57.659 40.909 7.91 7.91 31.70 4.06
120 121 3.750652 TCTTTAGTTTCATCACGCATGCA 59.249 39.130 19.57 0.00 31.70 3.96
121 122 3.469899 TTAGTTTCATCACGCATGCAC 57.530 42.857 19.57 5.42 31.70 4.57
122 123 0.523072 AGTTTCATCACGCATGCACC 59.477 50.000 19.57 0.00 31.70 5.01
123 124 0.523072 GTTTCATCACGCATGCACCT 59.477 50.000 19.57 0.00 31.70 4.00
124 125 1.068333 GTTTCATCACGCATGCACCTT 60.068 47.619 19.57 0.00 31.70 3.50
125 126 0.804364 TTCATCACGCATGCACCTTC 59.196 50.000 19.57 0.00 31.70 3.46
126 127 0.036105 TCATCACGCATGCACCTTCT 60.036 50.000 19.57 0.00 31.70 2.85
127 128 0.806868 CATCACGCATGCACCTTCTT 59.193 50.000 19.57 0.00 0.00 2.52
128 129 1.200716 CATCACGCATGCACCTTCTTT 59.799 47.619 19.57 0.00 0.00 2.52
129 130 0.592637 TCACGCATGCACCTTCTTTG 59.407 50.000 19.57 0.00 0.00 2.77
130 131 0.311790 CACGCATGCACCTTCTTTGT 59.688 50.000 19.57 0.41 0.00 2.83
131 132 0.593128 ACGCATGCACCTTCTTTGTC 59.407 50.000 19.57 0.00 0.00 3.18
132 133 0.453282 CGCATGCACCTTCTTTGTCG 60.453 55.000 19.57 0.00 0.00 4.35
133 134 0.109597 GCATGCACCTTCTTTGTCGG 60.110 55.000 14.21 0.00 0.00 4.79
134 135 1.238439 CATGCACCTTCTTTGTCGGT 58.762 50.000 0.00 0.00 0.00 4.69
135 136 1.608590 CATGCACCTTCTTTGTCGGTT 59.391 47.619 0.00 0.00 0.00 4.44
136 137 1.021202 TGCACCTTCTTTGTCGGTTG 58.979 50.000 0.00 0.00 0.00 3.77
137 138 1.021968 GCACCTTCTTTGTCGGTTGT 58.978 50.000 0.00 0.00 0.00 3.32
138 139 1.404035 GCACCTTCTTTGTCGGTTGTT 59.596 47.619 0.00 0.00 0.00 2.83
139 140 2.794631 GCACCTTCTTTGTCGGTTGTTG 60.795 50.000 0.00 0.00 0.00 3.33
140 141 2.422127 CACCTTCTTTGTCGGTTGTTGT 59.578 45.455 0.00 0.00 0.00 3.32
141 142 3.086282 ACCTTCTTTGTCGGTTGTTGTT 58.914 40.909 0.00 0.00 0.00 2.83
142 143 3.119637 ACCTTCTTTGTCGGTTGTTGTTG 60.120 43.478 0.00 0.00 0.00 3.33
143 144 3.119637 CCTTCTTTGTCGGTTGTTGTTGT 60.120 43.478 0.00 0.00 0.00 3.32
144 145 4.481463 CTTCTTTGTCGGTTGTTGTTGTT 58.519 39.130 0.00 0.00 0.00 2.83
145 146 5.392165 CCTTCTTTGTCGGTTGTTGTTGTTA 60.392 40.000 0.00 0.00 0.00 2.41
146 147 4.972201 TCTTTGTCGGTTGTTGTTGTTAC 58.028 39.130 0.00 0.00 0.00 2.50
147 148 4.696402 TCTTTGTCGGTTGTTGTTGTTACT 59.304 37.500 0.00 0.00 0.00 2.24
148 149 4.603231 TTGTCGGTTGTTGTTGTTACTC 57.397 40.909 0.00 0.00 0.00 2.59
149 150 3.864243 TGTCGGTTGTTGTTGTTACTCT 58.136 40.909 0.00 0.00 0.00 3.24
150 151 3.619483 TGTCGGTTGTTGTTGTTACTCTG 59.381 43.478 0.00 0.00 0.00 3.35
151 152 2.610374 TCGGTTGTTGTTGTTACTCTGC 59.390 45.455 0.00 0.00 0.00 4.26
152 153 2.612212 CGGTTGTTGTTGTTACTCTGCT 59.388 45.455 0.00 0.00 0.00 4.24
153 154 3.303132 CGGTTGTTGTTGTTACTCTGCTC 60.303 47.826 0.00 0.00 0.00 4.26
154 155 3.303132 GGTTGTTGTTGTTACTCTGCTCG 60.303 47.826 0.00 0.00 0.00 5.03
155 156 3.173668 TGTTGTTGTTACTCTGCTCGT 57.826 42.857 0.00 0.00 0.00 4.18
156 157 3.527533 TGTTGTTGTTACTCTGCTCGTT 58.472 40.909 0.00 0.00 0.00 3.85
157 158 3.554324 TGTTGTTGTTACTCTGCTCGTTC 59.446 43.478 0.00 0.00 0.00 3.95
158 159 3.446310 TGTTGTTACTCTGCTCGTTCA 57.554 42.857 0.00 0.00 0.00 3.18
159 160 3.381045 TGTTGTTACTCTGCTCGTTCAG 58.619 45.455 1.24 1.24 35.46 3.02
167 168 3.957260 GCTCGTTCAGCTTCAGCA 58.043 55.556 0.75 0.00 45.83 4.41
168 169 1.495069 GCTCGTTCAGCTTCAGCAC 59.505 57.895 0.75 0.00 45.83 4.40
169 170 0.948141 GCTCGTTCAGCTTCAGCACT 60.948 55.000 0.75 0.00 45.83 4.40
170 171 1.670087 GCTCGTTCAGCTTCAGCACTA 60.670 52.381 0.75 0.00 45.83 2.74
171 172 2.257894 CTCGTTCAGCTTCAGCACTAG 58.742 52.381 0.75 0.00 45.16 2.57
172 173 0.718343 CGTTCAGCTTCAGCACTAGC 59.282 55.000 0.75 0.00 45.16 3.42
173 174 1.082690 GTTCAGCTTCAGCACTAGCC 58.917 55.000 0.75 0.00 45.16 3.93
174 175 0.686789 TTCAGCTTCAGCACTAGCCA 59.313 50.000 0.75 0.00 45.16 4.75
175 176 0.907486 TCAGCTTCAGCACTAGCCAT 59.093 50.000 0.75 0.00 45.16 4.40
176 177 2.110578 TCAGCTTCAGCACTAGCCATA 58.889 47.619 0.75 0.00 45.16 2.74
177 178 2.702478 TCAGCTTCAGCACTAGCCATAT 59.298 45.455 0.75 0.00 45.16 1.78
178 179 3.065655 CAGCTTCAGCACTAGCCATATC 58.934 50.000 0.75 0.00 45.16 1.63
179 180 2.702478 AGCTTCAGCACTAGCCATATCA 59.298 45.455 0.75 0.00 45.16 2.15
180 181 3.327172 AGCTTCAGCACTAGCCATATCAT 59.673 43.478 0.75 0.00 45.16 2.45
181 182 3.436015 GCTTCAGCACTAGCCATATCATG 59.564 47.826 0.00 0.00 43.56 3.07
182 183 4.801914 GCTTCAGCACTAGCCATATCATGA 60.802 45.833 0.00 0.00 43.56 3.07
183 184 5.489249 CTTCAGCACTAGCCATATCATGAT 58.511 41.667 13.81 13.81 43.56 2.45
184 185 5.494390 TCAGCACTAGCCATATCATGATT 57.506 39.130 14.65 0.00 43.56 2.57
185 186 5.243207 TCAGCACTAGCCATATCATGATTG 58.757 41.667 14.65 11.47 43.56 2.67
186 187 5.001874 CAGCACTAGCCATATCATGATTGT 58.998 41.667 14.65 0.15 43.56 2.71
187 188 5.001874 AGCACTAGCCATATCATGATTGTG 58.998 41.667 14.65 12.85 43.56 3.33
188 189 4.999311 GCACTAGCCATATCATGATTGTGA 59.001 41.667 14.65 0.00 30.49 3.58
189 190 5.106791 GCACTAGCCATATCATGATTGTGAC 60.107 44.000 14.65 6.27 30.49 3.67
190 191 5.119743 CACTAGCCATATCATGATTGTGACG 59.880 44.000 14.65 3.62 30.49 4.35
191 192 4.077300 AGCCATATCATGATTGTGACGT 57.923 40.909 14.65 0.00 0.00 4.34
192 193 4.454678 AGCCATATCATGATTGTGACGTT 58.545 39.130 14.65 0.00 0.00 3.99
193 194 4.512944 AGCCATATCATGATTGTGACGTTC 59.487 41.667 14.65 2.47 0.00 3.95
194 195 4.512944 GCCATATCATGATTGTGACGTTCT 59.487 41.667 14.65 0.00 0.00 3.01
195 196 5.008019 GCCATATCATGATTGTGACGTTCTT 59.992 40.000 14.65 0.00 0.00 2.52
196 197 6.653183 CCATATCATGATTGTGACGTTCTTC 58.347 40.000 14.65 0.00 0.00 2.87
197 198 6.481313 CCATATCATGATTGTGACGTTCTTCT 59.519 38.462 14.65 0.00 0.00 2.85
198 199 5.791367 ATCATGATTGTGACGTTCTTCTG 57.209 39.130 1.18 0.00 0.00 3.02
199 200 3.996363 TCATGATTGTGACGTTCTTCTGG 59.004 43.478 0.00 0.00 0.00 3.86
200 201 2.143122 TGATTGTGACGTTCTTCTGGC 58.857 47.619 0.00 0.00 0.00 4.85
201 202 1.126846 GATTGTGACGTTCTTCTGGCG 59.873 52.381 0.00 0.00 0.00 5.69
202 203 0.103390 TTGTGACGTTCTTCTGGCGA 59.897 50.000 0.00 0.00 0.00 5.54
203 204 0.596600 TGTGACGTTCTTCTGGCGAC 60.597 55.000 0.00 0.00 0.00 5.19
204 205 1.371267 TGACGTTCTTCTGGCGACG 60.371 57.895 0.00 0.00 41.00 5.12
205 206 2.717809 GACGTTCTTCTGGCGACGC 61.718 63.158 12.43 12.43 38.97 5.19
206 207 2.430921 CGTTCTTCTGGCGACGCT 60.431 61.111 20.77 0.00 0.00 5.07
207 208 2.720758 CGTTCTTCTGGCGACGCTG 61.721 63.158 20.77 12.98 0.00 5.18
208 209 2.738521 TTCTTCTGGCGACGCTGC 60.739 61.111 20.77 4.29 0.00 5.25
209 210 3.513768 TTCTTCTGGCGACGCTGCA 62.514 57.895 20.77 9.23 36.28 4.41
210 211 2.786539 TTCTTCTGGCGACGCTGCAT 62.787 55.000 20.77 0.00 36.28 3.96
211 212 2.358615 TTCTGGCGACGCTGCATT 60.359 55.556 20.77 0.00 36.28 3.56
212 213 2.301902 CTTCTGGCGACGCTGCATTC 62.302 60.000 20.77 1.85 36.28 2.67
213 214 4.214383 CTGGCGACGCTGCATTCG 62.214 66.667 20.77 14.41 38.31 3.34
214 215 4.733371 TGGCGACGCTGCATTCGA 62.733 61.111 20.77 2.19 37.43 3.71
215 216 3.918220 GGCGACGCTGCATTCGAG 61.918 66.667 20.77 9.44 37.43 4.04
216 217 3.918220 GCGACGCTGCATTCGAGG 61.918 66.667 20.92 7.59 37.43 4.63
217 218 3.918220 CGACGCTGCATTCGAGGC 61.918 66.667 13.71 4.37 37.43 4.70
218 219 2.815211 GACGCTGCATTCGAGGCA 60.815 61.111 14.25 12.46 39.32 4.75
219 220 2.124983 ACGCTGCATTCGAGGCAT 60.125 55.556 13.29 0.00 41.06 4.40
220 221 1.709147 GACGCTGCATTCGAGGCATT 61.709 55.000 13.29 2.87 41.06 3.56
221 222 1.010350 CGCTGCATTCGAGGCATTC 60.010 57.895 13.29 8.31 41.06 2.67
222 223 1.434622 CGCTGCATTCGAGGCATTCT 61.435 55.000 13.29 0.00 41.06 2.40
223 224 0.737219 GCTGCATTCGAGGCATTCTT 59.263 50.000 13.29 0.00 41.06 2.52
224 225 1.533338 GCTGCATTCGAGGCATTCTTG 60.533 52.381 13.29 4.19 41.06 3.02
241 242 7.251704 CATTCTTGCAACTTATTATCCGTCT 57.748 36.000 0.00 0.00 0.00 4.18
242 243 7.697691 CATTCTTGCAACTTATTATCCGTCTT 58.302 34.615 0.00 0.00 0.00 3.01
243 244 6.903883 TCTTGCAACTTATTATCCGTCTTC 57.096 37.500 0.00 0.00 0.00 2.87
244 245 6.640518 TCTTGCAACTTATTATCCGTCTTCT 58.359 36.000 0.00 0.00 0.00 2.85
245 246 7.778083 TCTTGCAACTTATTATCCGTCTTCTA 58.222 34.615 0.00 0.00 0.00 2.10
246 247 8.421784 TCTTGCAACTTATTATCCGTCTTCTAT 58.578 33.333 0.00 0.00 0.00 1.98
247 248 9.692749 CTTGCAACTTATTATCCGTCTTCTATA 57.307 33.333 0.00 0.00 0.00 1.31
275 276 9.472361 AAATATGATACGTAATTTGCGTACTCT 57.528 29.630 19.55 6.62 45.64 3.24
276 277 6.988109 ATGATACGTAATTTGCGTACTCTC 57.012 37.500 19.55 14.42 45.64 3.20
277 278 4.965762 TGATACGTAATTTGCGTACTCTCG 59.034 41.667 19.55 0.00 45.64 4.04
278 279 3.476295 ACGTAATTTGCGTACTCTCGA 57.524 42.857 10.88 0.00 41.06 4.04
279 280 3.825308 ACGTAATTTGCGTACTCTCGAA 58.175 40.909 10.88 0.00 41.06 3.71
280 281 4.229096 ACGTAATTTGCGTACTCTCGAAA 58.771 39.130 10.88 0.00 41.06 3.46
281 282 4.681025 ACGTAATTTGCGTACTCTCGAAAA 59.319 37.500 10.88 0.00 41.60 2.29
282 283 5.175491 ACGTAATTTGCGTACTCTCGAAAAA 59.825 36.000 10.88 0.00 40.89 1.94
309 310 8.242729 AGGTTATATATGGCTATACCGTTACC 57.757 38.462 0.00 0.00 43.94 2.85
310 311 7.013655 AGGTTATATATGGCTATACCGTTACCG 59.986 40.741 0.00 0.00 43.94 4.02
311 312 7.201821 GGTTATATATGGCTATACCGTTACCGT 60.202 40.741 0.00 0.00 43.94 4.83
312 313 6.780457 ATATATGGCTATACCGTTACCGTT 57.220 37.500 0.00 0.00 43.94 4.44
313 314 2.582728 TGGCTATACCGTTACCGTTG 57.417 50.000 0.00 0.00 43.94 4.10
314 315 2.098614 TGGCTATACCGTTACCGTTGA 58.901 47.619 0.00 0.00 43.94 3.18
315 316 2.159254 TGGCTATACCGTTACCGTTGAC 60.159 50.000 0.00 0.00 43.94 3.18
316 317 2.463876 GCTATACCGTTACCGTTGACC 58.536 52.381 0.00 0.00 0.00 4.02
317 318 2.159254 GCTATACCGTTACCGTTGACCA 60.159 50.000 0.00 0.00 0.00 4.02
318 319 3.491447 GCTATACCGTTACCGTTGACCAT 60.491 47.826 0.00 0.00 0.00 3.55
319 320 2.367030 TACCGTTACCGTTGACCATG 57.633 50.000 0.00 0.00 0.00 3.66
320 321 0.952010 ACCGTTACCGTTGACCATGC 60.952 55.000 0.00 0.00 0.00 4.06
321 322 0.672401 CCGTTACCGTTGACCATGCT 60.672 55.000 0.00 0.00 0.00 3.79
322 323 0.719465 CGTTACCGTTGACCATGCTC 59.281 55.000 0.00 0.00 0.00 4.26
323 324 1.671850 CGTTACCGTTGACCATGCTCT 60.672 52.381 0.00 0.00 0.00 4.09
324 325 2.416296 CGTTACCGTTGACCATGCTCTA 60.416 50.000 0.00 0.00 0.00 2.43
325 326 3.592059 GTTACCGTTGACCATGCTCTAA 58.408 45.455 0.00 0.00 0.00 2.10
326 327 2.094762 ACCGTTGACCATGCTCTAAC 57.905 50.000 0.00 0.00 0.00 2.34
327 328 1.623811 ACCGTTGACCATGCTCTAACT 59.376 47.619 0.00 0.00 0.00 2.24
328 329 2.829720 ACCGTTGACCATGCTCTAACTA 59.170 45.455 0.00 0.00 0.00 2.24
329 330 3.187700 CCGTTGACCATGCTCTAACTAC 58.812 50.000 0.00 0.00 0.00 2.73
330 331 3.187700 CGTTGACCATGCTCTAACTACC 58.812 50.000 0.00 0.00 0.00 3.18
331 332 3.532542 GTTGACCATGCTCTAACTACCC 58.467 50.000 0.00 0.00 0.00 3.69
332 333 2.827755 TGACCATGCTCTAACTACCCA 58.172 47.619 0.00 0.00 0.00 4.51
333 334 2.500098 TGACCATGCTCTAACTACCCAC 59.500 50.000 0.00 0.00 0.00 4.61
334 335 1.838077 ACCATGCTCTAACTACCCACC 59.162 52.381 0.00 0.00 0.00 4.61
335 336 2.119495 CCATGCTCTAACTACCCACCT 58.881 52.381 0.00 0.00 0.00 4.00
336 337 2.158900 CCATGCTCTAACTACCCACCTG 60.159 54.545 0.00 0.00 0.00 4.00
337 338 0.902531 TGCTCTAACTACCCACCTGC 59.097 55.000 0.00 0.00 0.00 4.85
338 339 0.902531 GCTCTAACTACCCACCTGCA 59.097 55.000 0.00 0.00 0.00 4.41
339 340 1.278127 GCTCTAACTACCCACCTGCAA 59.722 52.381 0.00 0.00 0.00 4.08
340 341 2.092914 GCTCTAACTACCCACCTGCAAT 60.093 50.000 0.00 0.00 0.00 3.56
341 342 3.622455 GCTCTAACTACCCACCTGCAATT 60.622 47.826 0.00 0.00 0.00 2.32
342 343 3.941483 CTCTAACTACCCACCTGCAATTG 59.059 47.826 0.00 0.00 0.00 2.32
343 344 2.969821 AACTACCCACCTGCAATTGA 57.030 45.000 10.34 0.00 0.00 2.57
344 345 2.496899 ACTACCCACCTGCAATTGAG 57.503 50.000 10.34 3.86 0.00 3.02
345 346 1.098050 CTACCCACCTGCAATTGAGC 58.902 55.000 10.34 0.00 0.00 4.26
346 347 0.676466 TACCCACCTGCAATTGAGCG 60.676 55.000 10.34 0.00 37.31 5.03
347 348 1.973281 CCCACCTGCAATTGAGCGT 60.973 57.895 10.34 0.00 37.31 5.07
348 349 1.526575 CCCACCTGCAATTGAGCGTT 61.527 55.000 10.34 0.00 37.31 4.84
349 350 0.314935 CCACCTGCAATTGAGCGTTT 59.685 50.000 10.34 0.00 37.31 3.60
350 351 1.539388 CCACCTGCAATTGAGCGTTTA 59.461 47.619 10.34 0.00 37.31 2.01
351 352 2.164219 CCACCTGCAATTGAGCGTTTAT 59.836 45.455 10.34 0.00 37.31 1.40
352 353 3.429085 CACCTGCAATTGAGCGTTTATC 58.571 45.455 10.34 0.00 37.31 1.75
353 354 3.127548 CACCTGCAATTGAGCGTTTATCT 59.872 43.478 10.34 0.00 37.31 1.98
354 355 3.127548 ACCTGCAATTGAGCGTTTATCTG 59.872 43.478 10.34 0.00 37.31 2.90
355 356 3.488047 CCTGCAATTGAGCGTTTATCTGG 60.488 47.826 10.34 0.00 37.31 3.86
356 357 3.342719 TGCAATTGAGCGTTTATCTGGA 58.657 40.909 10.34 0.00 37.31 3.86
357 358 3.126858 TGCAATTGAGCGTTTATCTGGAC 59.873 43.478 10.34 0.00 37.31 4.02
367 368 4.324267 CGTTTATCTGGACCACTTCCTTT 58.676 43.478 0.00 0.00 46.10 3.11
455 456 5.887035 TCTAAAAAGAAAAACACTCCCCGAA 59.113 36.000 0.00 0.00 0.00 4.30
520 521 1.261938 CGGTACCCACCTGTCATCCA 61.262 60.000 6.25 0.00 43.33 3.41
535 536 1.747355 CATCCAAATGGTCAGTGCCTC 59.253 52.381 0.00 0.00 36.34 4.70
536 537 0.770499 TCCAAATGGTCAGTGCCTCA 59.230 50.000 0.00 0.00 36.34 3.86
539 540 2.233271 CAAATGGTCAGTGCCTCAAGT 58.767 47.619 5.39 0.00 0.00 3.16
548 549 3.391296 TCAGTGCCTCAAGTAAAGAACCT 59.609 43.478 0.00 0.00 0.00 3.50
549 550 3.748568 CAGTGCCTCAAGTAAAGAACCTC 59.251 47.826 0.00 0.00 0.00 3.85
550 551 3.391296 AGTGCCTCAAGTAAAGAACCTCA 59.609 43.478 0.00 0.00 0.00 3.86
553 554 4.821805 TGCCTCAAGTAAAGAACCTCAAAG 59.178 41.667 0.00 0.00 0.00 2.77
554 555 4.822350 GCCTCAAGTAAAGAACCTCAAAGT 59.178 41.667 0.00 0.00 0.00 2.66
555 556 5.278022 GCCTCAAGTAAAGAACCTCAAAGTG 60.278 44.000 0.00 0.00 0.00 3.16
556 557 6.055588 CCTCAAGTAAAGAACCTCAAAGTGA 58.944 40.000 0.00 0.00 0.00 3.41
557 558 6.712547 CCTCAAGTAAAGAACCTCAAAGTGAT 59.287 38.462 0.00 0.00 0.00 3.06
558 559 7.878127 CCTCAAGTAAAGAACCTCAAAGTGATA 59.122 37.037 0.00 0.00 0.00 2.15
559 560 8.603242 TCAAGTAAAGAACCTCAAAGTGATAC 57.397 34.615 0.00 0.00 0.00 2.24
561 562 6.164176 AGTAAAGAACCTCAAAGTGATACCG 58.836 40.000 0.00 0.00 0.00 4.02
562 563 2.973945 AGAACCTCAAAGTGATACCGC 58.026 47.619 0.00 0.00 0.00 5.68
563 564 2.007608 GAACCTCAAAGTGATACCGCC 58.992 52.381 0.00 0.00 0.00 6.13
564 565 1.276622 ACCTCAAAGTGATACCGCCT 58.723 50.000 0.00 0.00 0.00 5.52
565 566 2.463752 ACCTCAAAGTGATACCGCCTA 58.536 47.619 0.00 0.00 0.00 3.93
567 568 2.431057 CCTCAAAGTGATACCGCCTACT 59.569 50.000 0.00 0.00 0.00 2.57
568 569 3.635373 CCTCAAAGTGATACCGCCTACTA 59.365 47.826 0.00 0.00 0.00 1.82
569 570 4.281182 CCTCAAAGTGATACCGCCTACTAT 59.719 45.833 0.00 0.00 0.00 2.12
570 571 5.449107 TCAAAGTGATACCGCCTACTATC 57.551 43.478 0.00 0.00 0.00 2.08
572 573 2.434428 AGTGATACCGCCTACTATCCG 58.566 52.381 0.00 0.00 0.00 4.18
574 575 1.171308 GATACCGCCTACTATCCGCA 58.829 55.000 0.00 0.00 0.00 5.69
576 577 0.109153 TACCGCCTACTATCCGCAGA 59.891 55.000 0.00 0.00 0.00 4.26
577 578 0.754217 ACCGCCTACTATCCGCAGAA 60.754 55.000 0.00 0.00 0.00 3.02
578 579 0.387929 CCGCCTACTATCCGCAGAAA 59.612 55.000 0.00 0.00 0.00 2.52
581 582 2.029828 CGCCTACTATCCGCAGAAATCT 60.030 50.000 0.00 0.00 0.00 2.40
582 583 3.580731 GCCTACTATCCGCAGAAATCTC 58.419 50.000 0.00 0.00 0.00 2.75
583 584 3.827625 CCTACTATCCGCAGAAATCTCG 58.172 50.000 0.00 0.00 0.00 4.04
584 585 2.141535 ACTATCCGCAGAAATCTCGC 57.858 50.000 0.00 0.00 0.00 5.03
585 586 1.683917 ACTATCCGCAGAAATCTCGCT 59.316 47.619 0.00 0.00 0.00 4.93
586 587 2.101582 ACTATCCGCAGAAATCTCGCTT 59.898 45.455 0.00 0.00 0.00 4.68
587 588 1.576356 ATCCGCAGAAATCTCGCTTC 58.424 50.000 0.00 0.00 0.00 3.86
1209 1237 3.379445 CTGTACCGCTCCGTGGGT 61.379 66.667 0.00 0.00 37.55 4.51
1494 1522 3.160047 CTGGAGCAGGAGGCCGAT 61.160 66.667 0.00 0.00 46.50 4.18
1497 1525 2.134287 GGAGCAGGAGGCCGATACA 61.134 63.158 0.00 0.00 46.50 2.29
1529 1557 4.394078 CGCGAACGAGGTGACCGA 62.394 66.667 0.00 0.00 43.93 4.69
1546 1574 1.080434 GACGCGGAAGAGAGCAACT 60.080 57.895 12.47 0.00 33.96 3.16
1706 1734 4.373116 GTTGGTGGAGCGCGAGGA 62.373 66.667 12.10 0.00 0.00 3.71
1707 1735 3.390521 TTGGTGGAGCGCGAGGAT 61.391 61.111 12.10 0.00 0.00 3.24
1818 1846 5.726980 TGCAATCTTAGGCATTTCAACTT 57.273 34.783 0.00 0.00 34.58 2.66
1836 1868 4.946478 ACTTTAGTAGGAGCTAGGCATG 57.054 45.455 0.00 0.00 0.00 4.06
1851 1883 3.115390 AGGCATGGTAGGTGAACAGTAT 58.885 45.455 0.00 0.00 0.00 2.12
1904 1936 7.815398 TTTAGTTCTCGAATTATAACGCACA 57.185 32.000 0.00 0.00 0.00 4.57
1905 1937 5.697848 AGTTCTCGAATTATAACGCACAC 57.302 39.130 0.00 0.00 0.00 3.82
1912 1944 5.805994 TCGAATTATAACGCACACACATGTA 59.194 36.000 0.00 0.00 36.72 2.29
1933 1965 1.067635 GCACGAAGCAATTTCACCCAT 60.068 47.619 0.00 0.00 44.79 4.00
1938 1970 6.144854 CACGAAGCAATTTCACCCATATATG 58.855 40.000 5.68 5.68 35.43 1.78
1941 1973 7.147915 ACGAAGCAATTTCACCCATATATGTTT 60.148 33.333 11.73 0.00 35.43 2.83
1942 1974 7.706179 CGAAGCAATTTCACCCATATATGTTTT 59.294 33.333 11.73 0.00 35.43 2.43
1943 1975 8.721019 AAGCAATTTCACCCATATATGTTTTG 57.279 30.769 11.73 5.71 0.00 2.44
1944 1976 8.076910 AGCAATTTCACCCATATATGTTTTGA 57.923 30.769 11.73 7.77 0.00 2.69
2011 2043 5.697633 GCATGACAATTTTCTGTTTGGATGT 59.302 36.000 0.00 0.00 0.00 3.06
2020 2052 6.522625 TTTCTGTTTGGATGTCAAGTTTCA 57.477 33.333 0.00 0.00 36.62 2.69
2021 2053 5.756195 TCTGTTTGGATGTCAAGTTTCAG 57.244 39.130 0.00 0.00 36.62 3.02
2071 2104 6.975772 GCCAACTTTAGTGTAAAAACATGTGA 59.024 34.615 0.00 0.00 0.00 3.58
2073 2106 7.167468 CCAACTTTAGTGTAAAAACATGTGAGC 59.833 37.037 0.00 0.00 0.00 4.26
2081 2114 3.896648 AAAACATGTGAGCGGTGTTAG 57.103 42.857 0.00 0.00 35.19 2.34
2099 2132 6.537485 GTGTTAGTACATGCCACATGTGTGA 61.537 44.000 23.79 10.54 41.45 3.58
2114 2147 2.233676 TGTGTGACAGTTATCGGCATCT 59.766 45.455 0.00 0.00 0.00 2.90
2182 2216 7.307632 GCCACAATATTATCAAGCAGAGTACTG 60.308 40.741 0.00 0.00 45.91 2.74
2184 2218 6.708054 ACAATATTATCAAGCAGAGTACTGGC 59.292 38.462 0.00 3.76 43.62 4.85
2187 2221 3.641434 ATCAAGCAGAGTACTGGCATT 57.359 42.857 16.12 6.85 43.62 3.56
2236 2270 6.375945 TGGTGATAATCAACATGTATGTGC 57.624 37.500 0.00 0.00 39.52 4.57
2258 2296 3.320879 TAGGTCGAGTCCGGACGCT 62.321 63.158 31.48 16.16 36.20 5.07
2365 2403 2.355837 GCGGCTCACGTTCACTGA 60.356 61.111 0.00 0.00 46.52 3.41
2374 2412 0.318784 ACGTTCACTGAAGACCGAGC 60.319 55.000 7.14 0.00 0.00 5.03
2510 2549 1.663702 GCGTGCGTGGAGTTAGTGT 60.664 57.895 0.00 0.00 0.00 3.55
2523 2562 1.049855 TTAGTGTCCGGTGTGGTGGT 61.050 55.000 0.00 0.00 39.52 4.16
2541 2580 1.270412 GGTCGGATGGTGTGTGTACAA 60.270 52.381 0.00 0.00 38.82 2.41
2546 2585 0.759959 ATGGTGTGTGTACAACCGGA 59.240 50.000 9.46 0.00 44.05 5.14
2689 2736 1.818674 GCCGGAAAATCTTGTGTCCAT 59.181 47.619 5.05 0.00 0.00 3.41
2698 2745 5.362556 AATCTTGTGTCCATTGTTCTTCG 57.637 39.130 0.00 0.00 0.00 3.79
2715 2762 1.034356 TCGTCTTTCACCTCCGTTCA 58.966 50.000 0.00 0.00 0.00 3.18
2741 2807 1.778484 GAGGAGAGGTAGCTAGAGGGT 59.222 57.143 0.00 0.00 0.00 4.34
2755 2821 1.792118 GAGGGTTGCGGTTCCAACAC 61.792 60.000 7.26 3.54 46.81 3.32
2756 2822 2.122167 GGGTTGCGGTTCCAACACA 61.122 57.895 7.26 0.00 45.96 3.72
2757 2823 1.460273 GGGTTGCGGTTCCAACACAT 61.460 55.000 7.26 0.00 45.96 3.21
2758 2824 0.039527 GGTTGCGGTTCCAACACATC 60.040 55.000 7.26 0.00 45.25 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.423845 GAGCGGTACAACGGCAATG 59.576 57.895 11.44 0.00 45.45 2.82
1 2 2.098233 CGAGCGGTACAACGGCAAT 61.098 57.895 11.44 0.00 45.45 3.56
4 5 2.431260 TTCGAGCGGTACAACGGC 60.431 61.111 0.00 1.74 43.68 5.68
5 6 0.797249 CTCTTCGAGCGGTACAACGG 60.797 60.000 0.00 0.00 0.00 4.44
6 7 0.167470 TCTCTTCGAGCGGTACAACG 59.833 55.000 0.00 0.00 0.00 4.10
7 8 1.199558 ACTCTCTTCGAGCGGTACAAC 59.800 52.381 0.00 0.00 43.85 3.32
8 9 1.199327 CACTCTCTTCGAGCGGTACAA 59.801 52.381 0.00 0.00 43.85 2.41
9 10 0.803117 CACTCTCTTCGAGCGGTACA 59.197 55.000 0.00 0.00 43.85 2.90
10 11 0.099082 CCACTCTCTTCGAGCGGTAC 59.901 60.000 0.00 0.00 43.85 3.34
11 12 0.035725 TCCACTCTCTTCGAGCGGTA 60.036 55.000 0.00 0.00 43.85 4.02
12 13 0.894184 TTCCACTCTCTTCGAGCGGT 60.894 55.000 0.00 0.00 43.85 5.68
13 14 0.179150 CTTCCACTCTCTTCGAGCGG 60.179 60.000 0.00 0.00 43.85 5.52
14 15 0.179150 CCTTCCACTCTCTTCGAGCG 60.179 60.000 0.00 0.00 43.85 5.03
15 16 0.892063 ACCTTCCACTCTCTTCGAGC 59.108 55.000 0.00 0.00 43.85 5.03
16 17 2.422127 GAGACCTTCCACTCTCTTCGAG 59.578 54.545 0.00 0.00 45.56 4.04
17 18 2.438411 GAGACCTTCCACTCTCTTCGA 58.562 52.381 0.00 0.00 31.74 3.71
18 19 1.131504 CGAGACCTTCCACTCTCTTCG 59.868 57.143 0.00 0.00 32.19 3.79
19 20 2.164338 ACGAGACCTTCCACTCTCTTC 58.836 52.381 0.00 0.00 32.19 2.87
20 21 2.296073 ACGAGACCTTCCACTCTCTT 57.704 50.000 0.00 0.00 32.19 2.85
21 22 1.889829 CAACGAGACCTTCCACTCTCT 59.110 52.381 0.00 0.00 32.19 3.10
22 23 1.887198 TCAACGAGACCTTCCACTCTC 59.113 52.381 0.00 0.00 0.00 3.20
23 24 1.614413 GTCAACGAGACCTTCCACTCT 59.386 52.381 0.00 0.00 41.56 3.24
24 25 2.067414 GTCAACGAGACCTTCCACTC 57.933 55.000 0.00 0.00 41.56 3.51
34 35 2.342279 CCCCGCAAGTCAACGAGA 59.658 61.111 0.00 0.00 0.00 4.04
35 36 3.423154 GCCCCGCAAGTCAACGAG 61.423 66.667 0.00 0.00 0.00 4.18
38 39 4.966787 TGGGCCCCGCAAGTCAAC 62.967 66.667 22.27 0.00 0.00 3.18
39 40 4.659172 CTGGGCCCCGCAAGTCAA 62.659 66.667 22.27 0.00 0.00 3.18
51 52 2.432972 CAACGCAATTGGCTGGGC 60.433 61.111 7.72 0.00 41.67 5.36
52 53 1.080569 GACAACGCAATTGGCTGGG 60.081 57.895 7.72 0.00 43.83 4.45
53 54 4.557942 GACAACGCAATTGGCTGG 57.442 55.556 7.72 0.00 43.83 4.85
57 58 2.734606 TCGTAAGAGACAACGCAATTGG 59.265 45.455 7.72 0.00 45.01 3.16
72 73 3.479006 CCGAGCAACACAAATTCGTAAG 58.521 45.455 0.00 0.00 0.00 2.34
73 74 2.224549 CCCGAGCAACACAAATTCGTAA 59.775 45.455 0.00 0.00 0.00 3.18
74 75 1.801771 CCCGAGCAACACAAATTCGTA 59.198 47.619 0.00 0.00 0.00 3.43
75 76 0.591170 CCCGAGCAACACAAATTCGT 59.409 50.000 0.00 0.00 0.00 3.85
76 77 0.729140 GCCCGAGCAACACAAATTCG 60.729 55.000 0.00 0.00 39.53 3.34
77 78 0.388520 GGCCCGAGCAACACAAATTC 60.389 55.000 0.00 0.00 42.56 2.17
78 79 1.112315 TGGCCCGAGCAACACAAATT 61.112 50.000 0.00 0.00 42.56 1.82
79 80 0.899717 ATGGCCCGAGCAACACAAAT 60.900 50.000 0.00 0.00 42.56 2.32
80 81 1.523154 GATGGCCCGAGCAACACAAA 61.523 55.000 0.00 0.00 42.56 2.83
81 82 1.971167 GATGGCCCGAGCAACACAA 60.971 57.895 0.00 0.00 42.56 3.33
82 83 2.359850 GATGGCCCGAGCAACACA 60.360 61.111 0.00 0.00 42.56 3.72
83 84 1.244019 AAAGATGGCCCGAGCAACAC 61.244 55.000 0.00 0.00 42.56 3.32
84 85 0.326595 TAAAGATGGCCCGAGCAACA 59.673 50.000 0.00 0.00 42.56 3.33
85 86 1.017387 CTAAAGATGGCCCGAGCAAC 58.983 55.000 0.00 0.00 42.56 4.17
86 87 0.618458 ACTAAAGATGGCCCGAGCAA 59.382 50.000 0.00 0.00 42.56 3.91
87 88 0.618458 AACTAAAGATGGCCCGAGCA 59.382 50.000 0.00 0.00 42.56 4.26
88 89 1.671328 GAAACTAAAGATGGCCCGAGC 59.329 52.381 0.00 0.00 38.76 5.03
89 90 2.985896 TGAAACTAAAGATGGCCCGAG 58.014 47.619 0.00 0.00 0.00 4.63
90 91 3.054728 TGATGAAACTAAAGATGGCCCGA 60.055 43.478 0.00 0.00 0.00 5.14
91 92 3.065371 GTGATGAAACTAAAGATGGCCCG 59.935 47.826 0.00 0.00 0.00 6.13
92 93 3.065371 CGTGATGAAACTAAAGATGGCCC 59.935 47.826 0.00 0.00 0.00 5.80
93 94 3.487544 GCGTGATGAAACTAAAGATGGCC 60.488 47.826 0.00 0.00 0.00 5.36
94 95 3.126858 TGCGTGATGAAACTAAAGATGGC 59.873 43.478 0.00 0.00 0.00 4.40
95 96 4.944962 TGCGTGATGAAACTAAAGATGG 57.055 40.909 0.00 0.00 0.00 3.51
96 97 4.731961 GCATGCGTGATGAAACTAAAGATG 59.268 41.667 10.93 0.00 33.31 2.90
97 98 4.395854 TGCATGCGTGATGAAACTAAAGAT 59.604 37.500 14.09 0.00 33.31 2.40
98 99 3.750652 TGCATGCGTGATGAAACTAAAGA 59.249 39.130 14.09 0.00 33.31 2.52
99 100 3.848019 GTGCATGCGTGATGAAACTAAAG 59.152 43.478 14.09 0.00 33.31 1.85
100 101 3.365868 GGTGCATGCGTGATGAAACTAAA 60.366 43.478 14.09 0.00 33.31 1.85
101 102 2.161410 GGTGCATGCGTGATGAAACTAA 59.839 45.455 14.09 0.00 33.31 2.24
102 103 1.737236 GGTGCATGCGTGATGAAACTA 59.263 47.619 14.09 0.00 33.31 2.24
103 104 0.523072 GGTGCATGCGTGATGAAACT 59.477 50.000 14.09 0.00 33.31 2.66
104 105 0.523072 AGGTGCATGCGTGATGAAAC 59.477 50.000 14.09 2.38 33.31 2.78
105 106 1.199789 GAAGGTGCATGCGTGATGAAA 59.800 47.619 14.09 0.00 33.31 2.69
106 107 0.804364 GAAGGTGCATGCGTGATGAA 59.196 50.000 14.09 0.00 33.31 2.57
107 108 0.036105 AGAAGGTGCATGCGTGATGA 60.036 50.000 14.09 0.00 33.31 2.92
108 109 0.806868 AAGAAGGTGCATGCGTGATG 59.193 50.000 14.09 0.00 34.84 3.07
109 110 1.200716 CAAAGAAGGTGCATGCGTGAT 59.799 47.619 14.09 0.00 0.00 3.06
110 111 0.592637 CAAAGAAGGTGCATGCGTGA 59.407 50.000 14.09 0.00 0.00 4.35
111 112 0.311790 ACAAAGAAGGTGCATGCGTG 59.688 50.000 14.09 0.09 0.00 5.34
112 113 0.593128 GACAAAGAAGGTGCATGCGT 59.407 50.000 14.09 0.46 0.00 5.24
113 114 0.453282 CGACAAAGAAGGTGCATGCG 60.453 55.000 14.09 0.00 0.00 4.73
114 115 0.109597 CCGACAAAGAAGGTGCATGC 60.110 55.000 11.82 11.82 0.00 4.06
115 116 1.238439 ACCGACAAAGAAGGTGCATG 58.762 50.000 0.00 0.00 36.81 4.06
116 117 1.608590 CAACCGACAAAGAAGGTGCAT 59.391 47.619 0.00 0.00 38.44 3.96
117 118 1.021202 CAACCGACAAAGAAGGTGCA 58.979 50.000 0.00 0.00 38.44 4.57
118 119 1.021968 ACAACCGACAAAGAAGGTGC 58.978 50.000 0.00 0.00 38.44 5.01
119 120 2.422127 ACAACAACCGACAAAGAAGGTG 59.578 45.455 0.00 0.00 38.44 4.00
120 121 2.718563 ACAACAACCGACAAAGAAGGT 58.281 42.857 0.00 0.00 40.50 3.50
121 122 3.119637 ACAACAACAACCGACAAAGAAGG 60.120 43.478 0.00 0.00 0.00 3.46
122 123 4.091453 ACAACAACAACCGACAAAGAAG 57.909 40.909 0.00 0.00 0.00 2.85
123 124 4.506886 AACAACAACAACCGACAAAGAA 57.493 36.364 0.00 0.00 0.00 2.52
124 125 4.696402 AGTAACAACAACAACCGACAAAGA 59.304 37.500 0.00 0.00 0.00 2.52
125 126 4.976987 AGTAACAACAACAACCGACAAAG 58.023 39.130 0.00 0.00 0.00 2.77
126 127 4.696402 AGAGTAACAACAACAACCGACAAA 59.304 37.500 0.00 0.00 0.00 2.83
127 128 4.093703 CAGAGTAACAACAACAACCGACAA 59.906 41.667 0.00 0.00 0.00 3.18
128 129 3.619483 CAGAGTAACAACAACAACCGACA 59.381 43.478 0.00 0.00 0.00 4.35
129 130 3.545426 GCAGAGTAACAACAACAACCGAC 60.545 47.826 0.00 0.00 0.00 4.79
130 131 2.610374 GCAGAGTAACAACAACAACCGA 59.390 45.455 0.00 0.00 0.00 4.69
131 132 2.612212 AGCAGAGTAACAACAACAACCG 59.388 45.455 0.00 0.00 0.00 4.44
132 133 3.303132 CGAGCAGAGTAACAACAACAACC 60.303 47.826 0.00 0.00 0.00 3.77
133 134 3.308866 ACGAGCAGAGTAACAACAACAAC 59.691 43.478 0.00 0.00 0.00 3.32
134 135 3.527533 ACGAGCAGAGTAACAACAACAA 58.472 40.909 0.00 0.00 0.00 2.83
135 136 3.173668 ACGAGCAGAGTAACAACAACA 57.826 42.857 0.00 0.00 0.00 3.33
136 137 3.554324 TGAACGAGCAGAGTAACAACAAC 59.446 43.478 0.00 0.00 0.00 3.32
137 138 3.787785 TGAACGAGCAGAGTAACAACAA 58.212 40.909 0.00 0.00 0.00 2.83
138 139 3.381045 CTGAACGAGCAGAGTAACAACA 58.619 45.455 3.73 0.00 38.14 3.33
151 152 2.257894 CTAGTGCTGAAGCTGAACGAG 58.742 52.381 3.61 0.00 42.66 4.18
152 153 1.670087 GCTAGTGCTGAAGCTGAACGA 60.670 52.381 3.61 0.00 42.66 3.85
153 154 0.718343 GCTAGTGCTGAAGCTGAACG 59.282 55.000 3.61 0.00 42.66 3.95
154 155 1.082690 GGCTAGTGCTGAAGCTGAAC 58.917 55.000 3.61 0.00 42.66 3.18
155 156 0.686789 TGGCTAGTGCTGAAGCTGAA 59.313 50.000 3.61 0.00 42.66 3.02
156 157 0.907486 ATGGCTAGTGCTGAAGCTGA 59.093 50.000 3.61 0.00 42.66 4.26
157 158 2.609427 TATGGCTAGTGCTGAAGCTG 57.391 50.000 3.61 0.00 42.66 4.24
158 159 2.702478 TGATATGGCTAGTGCTGAAGCT 59.298 45.455 3.61 0.00 42.66 3.74
159 160 3.117491 TGATATGGCTAGTGCTGAAGC 57.883 47.619 0.00 0.00 39.59 3.86
160 161 4.891260 TCATGATATGGCTAGTGCTGAAG 58.109 43.478 0.00 0.00 39.59 3.02
161 162 4.961438 TCATGATATGGCTAGTGCTGAA 57.039 40.909 0.00 0.00 39.59 3.02
162 163 5.221783 ACAATCATGATATGGCTAGTGCTGA 60.222 40.000 9.04 0.00 39.59 4.26
163 164 5.001874 ACAATCATGATATGGCTAGTGCTG 58.998 41.667 9.04 1.40 39.59 4.41
164 165 5.001874 CACAATCATGATATGGCTAGTGCT 58.998 41.667 9.04 0.00 39.59 4.40
165 166 4.999311 TCACAATCATGATATGGCTAGTGC 59.001 41.667 9.04 0.00 38.76 4.40
166 167 5.119743 CGTCACAATCATGATATGGCTAGTG 59.880 44.000 17.69 13.29 0.00 2.74
167 168 5.221521 ACGTCACAATCATGATATGGCTAGT 60.222 40.000 17.69 9.64 0.00 2.57
168 169 5.233225 ACGTCACAATCATGATATGGCTAG 58.767 41.667 17.69 9.16 0.00 3.42
169 170 5.213891 ACGTCACAATCATGATATGGCTA 57.786 39.130 17.69 1.11 0.00 3.93
170 171 4.077300 ACGTCACAATCATGATATGGCT 57.923 40.909 17.69 6.71 0.00 4.75
171 172 4.512944 AGAACGTCACAATCATGATATGGC 59.487 41.667 9.04 11.12 0.00 4.40
172 173 6.481313 AGAAGAACGTCACAATCATGATATGG 59.519 38.462 9.04 4.58 0.00 2.74
173 174 7.342942 CAGAAGAACGTCACAATCATGATATG 58.657 38.462 9.04 10.78 0.00 1.78
174 175 6.481313 CCAGAAGAACGTCACAATCATGATAT 59.519 38.462 9.04 0.00 0.00 1.63
175 176 5.812127 CCAGAAGAACGTCACAATCATGATA 59.188 40.000 9.04 0.00 0.00 2.15
176 177 4.633126 CCAGAAGAACGTCACAATCATGAT 59.367 41.667 1.18 1.18 0.00 2.45
177 178 3.996363 CCAGAAGAACGTCACAATCATGA 59.004 43.478 0.00 0.00 0.00 3.07
178 179 3.425359 GCCAGAAGAACGTCACAATCATG 60.425 47.826 0.00 0.00 0.00 3.07
179 180 2.744202 GCCAGAAGAACGTCACAATCAT 59.256 45.455 0.00 0.00 0.00 2.45
180 181 2.143122 GCCAGAAGAACGTCACAATCA 58.857 47.619 0.00 0.00 0.00 2.57
181 182 1.126846 CGCCAGAAGAACGTCACAATC 59.873 52.381 0.00 0.00 0.00 2.67
182 183 1.148310 CGCCAGAAGAACGTCACAAT 58.852 50.000 0.00 0.00 0.00 2.71
183 184 0.103390 TCGCCAGAAGAACGTCACAA 59.897 50.000 0.00 0.00 0.00 3.33
184 185 0.596600 GTCGCCAGAAGAACGTCACA 60.597 55.000 0.00 0.00 0.00 3.58
185 186 1.606350 CGTCGCCAGAAGAACGTCAC 61.606 60.000 0.00 0.00 0.00 3.67
186 187 1.371267 CGTCGCCAGAAGAACGTCA 60.371 57.895 0.00 0.00 0.00 4.35
187 188 2.717809 GCGTCGCCAGAAGAACGTC 61.718 63.158 5.75 0.00 0.00 4.34
188 189 2.733593 GCGTCGCCAGAAGAACGT 60.734 61.111 5.75 0.00 0.00 3.99
189 190 2.430921 AGCGTCGCCAGAAGAACG 60.431 61.111 14.86 0.00 0.00 3.95
190 191 3.016474 GCAGCGTCGCCAGAAGAAC 62.016 63.158 14.86 0.00 0.00 3.01
191 192 2.738521 GCAGCGTCGCCAGAAGAA 60.739 61.111 14.86 0.00 0.00 2.52
192 193 2.786539 AATGCAGCGTCGCCAGAAGA 62.787 55.000 14.86 0.00 0.00 2.87
193 194 2.301902 GAATGCAGCGTCGCCAGAAG 62.302 60.000 14.86 0.12 0.00 2.85
194 195 2.358615 AATGCAGCGTCGCCAGAA 60.359 55.556 14.86 1.34 0.00 3.02
195 196 2.815211 GAATGCAGCGTCGCCAGA 60.815 61.111 14.86 0.00 0.00 3.86
196 197 4.214383 CGAATGCAGCGTCGCCAG 62.214 66.667 14.86 8.34 0.00 4.85
197 198 4.733371 TCGAATGCAGCGTCGCCA 62.733 61.111 14.86 6.07 37.19 5.69
198 199 3.918220 CTCGAATGCAGCGTCGCC 61.918 66.667 14.86 0.00 37.19 5.54
199 200 3.918220 CCTCGAATGCAGCGTCGC 61.918 66.667 9.80 9.80 37.19 5.19
200 201 3.918220 GCCTCGAATGCAGCGTCG 61.918 66.667 11.21 11.21 38.62 5.12
201 202 1.709147 AATGCCTCGAATGCAGCGTC 61.709 55.000 13.85 0.00 42.92 5.19
202 203 1.709147 GAATGCCTCGAATGCAGCGT 61.709 55.000 13.85 3.45 42.92 5.07
203 204 1.010350 GAATGCCTCGAATGCAGCG 60.010 57.895 13.85 5.48 42.92 5.18
204 205 0.737219 AAGAATGCCTCGAATGCAGC 59.263 50.000 13.85 9.00 42.92 5.25
205 206 2.470196 CAAGAATGCCTCGAATGCAG 57.530 50.000 13.85 0.00 42.92 4.41
217 218 7.251704 AGACGGATAATAAGTTGCAAGAATG 57.748 36.000 0.00 0.00 0.00 2.67
218 219 7.770897 AGAAGACGGATAATAAGTTGCAAGAAT 59.229 33.333 0.00 0.00 0.00 2.40
219 220 7.103641 AGAAGACGGATAATAAGTTGCAAGAA 58.896 34.615 0.00 0.00 0.00 2.52
220 221 6.640518 AGAAGACGGATAATAAGTTGCAAGA 58.359 36.000 0.00 0.00 0.00 3.02
221 222 6.910536 AGAAGACGGATAATAAGTTGCAAG 57.089 37.500 0.00 0.00 0.00 4.01
249 250 9.472361 AGAGTACGCAAATTACGTATCATATTT 57.528 29.630 14.46 0.00 46.52 1.40
250 251 9.125906 GAGAGTACGCAAATTACGTATCATATT 57.874 33.333 14.46 0.00 46.52 1.28
251 252 7.480855 CGAGAGTACGCAAATTACGTATCATAT 59.519 37.037 14.46 4.61 46.52 1.78
252 253 6.793680 CGAGAGTACGCAAATTACGTATCATA 59.206 38.462 14.46 0.00 46.52 2.15
253 254 5.624081 CGAGAGTACGCAAATTACGTATCAT 59.376 40.000 14.46 6.50 46.52 2.45
254 255 4.965762 CGAGAGTACGCAAATTACGTATCA 59.034 41.667 14.46 0.00 46.52 2.15
255 256 5.200454 TCGAGAGTACGCAAATTACGTATC 58.800 41.667 14.46 12.59 46.52 2.24
256 257 5.160699 TCGAGAGTACGCAAATTACGTAT 57.839 39.130 14.46 6.37 46.52 3.06
257 258 4.598406 TCGAGAGTACGCAAATTACGTA 57.402 40.909 9.00 9.00 44.55 3.57
259 260 4.811158 TTTCGAGAGTACGCAAATTACG 57.189 40.909 0.00 0.00 0.00 3.18
283 284 8.699130 GGTAACGGTATAGCCATATATAACCTT 58.301 37.037 0.00 0.00 36.97 3.50
284 285 8.242729 GGTAACGGTATAGCCATATATAACCT 57.757 38.462 0.00 0.00 36.97 3.50
304 305 2.094762 AGAGCATGGTCAACGGTAAC 57.905 50.000 25.71 0.00 0.00 2.50
305 306 3.259876 AGTTAGAGCATGGTCAACGGTAA 59.740 43.478 25.71 12.56 0.00 2.85
306 307 2.829720 AGTTAGAGCATGGTCAACGGTA 59.170 45.455 25.71 7.16 0.00 4.02
307 308 1.623811 AGTTAGAGCATGGTCAACGGT 59.376 47.619 25.71 8.16 0.00 4.83
308 309 2.386661 AGTTAGAGCATGGTCAACGG 57.613 50.000 25.71 0.00 0.00 4.44
309 310 3.187700 GGTAGTTAGAGCATGGTCAACG 58.812 50.000 25.71 0.00 0.00 4.10
310 311 3.055385 TGGGTAGTTAGAGCATGGTCAAC 60.055 47.826 25.71 23.47 0.00 3.18
311 312 3.055385 GTGGGTAGTTAGAGCATGGTCAA 60.055 47.826 25.71 14.92 0.00 3.18
312 313 2.500098 GTGGGTAGTTAGAGCATGGTCA 59.500 50.000 25.71 9.93 0.00 4.02
313 314 2.158943 GGTGGGTAGTTAGAGCATGGTC 60.159 54.545 17.19 17.19 0.00 4.02
314 315 1.838077 GGTGGGTAGTTAGAGCATGGT 59.162 52.381 0.00 0.00 0.00 3.55
315 316 2.119495 AGGTGGGTAGTTAGAGCATGG 58.881 52.381 0.00 0.00 0.00 3.66
316 317 2.743183 GCAGGTGGGTAGTTAGAGCATG 60.743 54.545 0.00 0.00 0.00 4.06
317 318 1.486726 GCAGGTGGGTAGTTAGAGCAT 59.513 52.381 0.00 0.00 0.00 3.79
318 319 0.902531 GCAGGTGGGTAGTTAGAGCA 59.097 55.000 0.00 0.00 0.00 4.26
319 320 0.902531 TGCAGGTGGGTAGTTAGAGC 59.097 55.000 0.00 0.00 0.00 4.09
320 321 3.914426 ATTGCAGGTGGGTAGTTAGAG 57.086 47.619 0.00 0.00 0.00 2.43
321 322 3.585289 TCAATTGCAGGTGGGTAGTTAGA 59.415 43.478 0.00 0.00 0.00 2.10
322 323 3.941483 CTCAATTGCAGGTGGGTAGTTAG 59.059 47.826 0.00 0.00 0.00 2.34
323 324 3.872240 GCTCAATTGCAGGTGGGTAGTTA 60.872 47.826 0.00 0.00 0.00 2.24
324 325 2.795329 CTCAATTGCAGGTGGGTAGTT 58.205 47.619 0.00 0.00 0.00 2.24
325 326 1.614317 GCTCAATTGCAGGTGGGTAGT 60.614 52.381 0.00 0.00 0.00 2.73
326 327 1.098050 GCTCAATTGCAGGTGGGTAG 58.902 55.000 0.00 0.00 0.00 3.18
327 328 0.676466 CGCTCAATTGCAGGTGGGTA 60.676 55.000 0.00 0.00 0.00 3.69
328 329 1.973281 CGCTCAATTGCAGGTGGGT 60.973 57.895 0.00 0.00 0.00 4.51
329 330 1.526575 AACGCTCAATTGCAGGTGGG 61.527 55.000 0.00 0.00 0.00 4.61
330 331 0.314935 AAACGCTCAATTGCAGGTGG 59.685 50.000 0.00 0.00 0.00 4.61
331 332 2.987413 TAAACGCTCAATTGCAGGTG 57.013 45.000 0.00 3.05 0.00 4.00
332 333 3.127548 CAGATAAACGCTCAATTGCAGGT 59.872 43.478 0.00 0.00 0.00 4.00
333 334 3.488047 CCAGATAAACGCTCAATTGCAGG 60.488 47.826 0.00 0.00 0.00 4.85
334 335 3.374988 TCCAGATAAACGCTCAATTGCAG 59.625 43.478 0.00 0.66 0.00 4.41
335 336 3.126858 GTCCAGATAAACGCTCAATTGCA 59.873 43.478 0.00 0.00 0.00 4.08
336 337 3.487544 GGTCCAGATAAACGCTCAATTGC 60.488 47.826 0.00 0.00 0.00 3.56
337 338 3.689161 TGGTCCAGATAAACGCTCAATTG 59.311 43.478 0.00 0.00 0.00 2.32
338 339 3.689649 GTGGTCCAGATAAACGCTCAATT 59.310 43.478 0.00 0.00 0.00 2.32
339 340 3.055094 AGTGGTCCAGATAAACGCTCAAT 60.055 43.478 0.00 0.00 0.00 2.57
340 341 2.301870 AGTGGTCCAGATAAACGCTCAA 59.698 45.455 0.00 0.00 0.00 3.02
341 342 1.899814 AGTGGTCCAGATAAACGCTCA 59.100 47.619 0.00 0.00 0.00 4.26
342 343 2.674796 AGTGGTCCAGATAAACGCTC 57.325 50.000 0.00 0.00 0.00 5.03
343 344 2.354805 GGAAGTGGTCCAGATAAACGCT 60.355 50.000 0.00 0.00 46.97 5.07
344 345 2.007608 GGAAGTGGTCCAGATAAACGC 58.992 52.381 0.00 0.00 46.97 4.84
355 356 5.561679 AGGAAGATAACAAAGGAAGTGGTC 58.438 41.667 0.00 0.00 0.00 4.02
356 357 5.310857 AGAGGAAGATAACAAAGGAAGTGGT 59.689 40.000 0.00 0.00 0.00 4.16
357 358 5.810095 AGAGGAAGATAACAAAGGAAGTGG 58.190 41.667 0.00 0.00 0.00 4.00
367 368 7.458409 AGTACGTTGTTAGAGGAAGATAACA 57.542 36.000 0.00 0.00 39.48 2.41
455 456 1.014044 CGTCGTGCTGTTATGCTGGT 61.014 55.000 0.00 0.00 0.00 4.00
520 521 2.664402 ACTTGAGGCACTGACCATTT 57.336 45.000 0.00 0.00 41.55 2.32
535 536 7.360101 CGGTATCACTTTGAGGTTCTTTACTTG 60.360 40.741 0.00 0.00 0.00 3.16
536 537 6.649557 CGGTATCACTTTGAGGTTCTTTACTT 59.350 38.462 0.00 0.00 0.00 2.24
539 540 4.933400 GCGGTATCACTTTGAGGTTCTTTA 59.067 41.667 0.00 0.00 0.00 1.85
548 549 4.280174 GGATAGTAGGCGGTATCACTTTGA 59.720 45.833 6.26 0.00 0.00 2.69
549 550 4.557205 GGATAGTAGGCGGTATCACTTTG 58.443 47.826 6.26 0.00 0.00 2.77
550 551 3.255149 CGGATAGTAGGCGGTATCACTTT 59.745 47.826 6.26 0.00 0.00 2.66
553 554 1.135460 GCGGATAGTAGGCGGTATCAC 60.135 57.143 6.26 0.00 0.00 3.06
554 555 1.171308 GCGGATAGTAGGCGGTATCA 58.829 55.000 6.26 0.00 0.00 2.15
555 556 1.132643 CTGCGGATAGTAGGCGGTATC 59.867 57.143 0.00 0.00 0.00 2.24
556 557 1.174783 CTGCGGATAGTAGGCGGTAT 58.825 55.000 0.00 0.00 0.00 2.73
557 558 0.109153 TCTGCGGATAGTAGGCGGTA 59.891 55.000 0.00 0.00 34.69 4.02
558 559 0.754217 TTCTGCGGATAGTAGGCGGT 60.754 55.000 0.00 0.00 34.69 5.68
559 560 0.387929 TTTCTGCGGATAGTAGGCGG 59.612 55.000 0.00 0.00 33.08 6.13
561 562 3.580731 GAGATTTCTGCGGATAGTAGGC 58.419 50.000 0.00 0.00 33.08 3.93
562 563 3.827625 CGAGATTTCTGCGGATAGTAGG 58.172 50.000 0.00 0.00 33.08 3.18
563 564 3.057876 AGCGAGATTTCTGCGGATAGTAG 60.058 47.826 0.00 0.00 0.00 2.57
564 565 2.885266 AGCGAGATTTCTGCGGATAGTA 59.115 45.455 0.00 0.00 0.00 1.82
565 566 1.683917 AGCGAGATTTCTGCGGATAGT 59.316 47.619 0.00 0.00 0.00 2.12
567 568 2.100749 TGAAGCGAGATTTCTGCGGATA 59.899 45.455 0.00 0.00 0.00 2.59
568 569 1.134699 TGAAGCGAGATTTCTGCGGAT 60.135 47.619 0.00 0.00 0.00 4.18
569 570 0.246360 TGAAGCGAGATTTCTGCGGA 59.754 50.000 0.00 0.00 0.00 5.54
570 571 2.754648 TGAAGCGAGATTTCTGCGG 58.245 52.632 0.00 0.00 0.00 5.69
986 999 2.100631 CCCATGACGACGGAACTGC 61.101 63.158 0.00 0.00 0.00 4.40
1226 1254 3.195825 CAGGAGGAGAAAGGACATTACGT 59.804 47.826 0.00 0.00 0.00 3.57
1237 1265 3.717294 GGCGGCCAGGAGGAGAAA 61.717 66.667 15.62 0.00 36.89 2.52
1445 1473 1.060698 GCGACCTCGAAACATGCTTAC 59.939 52.381 0.00 0.00 43.02 2.34
1446 1474 1.067142 AGCGACCTCGAAACATGCTTA 60.067 47.619 0.00 0.00 43.02 3.09
1451 1479 1.741770 GCCAGCGACCTCGAAACAT 60.742 57.895 0.00 0.00 43.02 2.71
1494 1522 1.664873 CGATGTCCTCGTCCTCTGTA 58.335 55.000 0.00 0.00 42.56 2.74
1529 1557 0.946221 CAAGTTGCTCTCTTCCGCGT 60.946 55.000 4.92 0.00 0.00 6.01
1690 1718 1.609635 TTATCCTCGCGCTCCACCAA 61.610 55.000 5.56 0.00 0.00 3.67
1706 1734 1.417890 CCATCTCCCGGAACTGCTTAT 59.582 52.381 0.73 0.00 0.00 1.73
1707 1735 0.830648 CCATCTCCCGGAACTGCTTA 59.169 55.000 0.73 0.00 0.00 3.09
1818 1846 3.330126 ACCATGCCTAGCTCCTACTAA 57.670 47.619 0.00 0.00 0.00 2.24
1894 1926 3.615056 GTGCTACATGTGTGTGCGTTATA 59.385 43.478 9.11 0.00 39.39 0.98
1899 1931 1.130411 CGTGCTACATGTGTGTGCG 59.870 57.895 9.11 3.06 39.39 5.34
1900 1932 0.865111 TTCGTGCTACATGTGTGTGC 59.135 50.000 9.11 8.18 39.39 4.57
1901 1933 1.136252 GCTTCGTGCTACATGTGTGTG 60.136 52.381 9.11 0.00 39.39 3.82
1902 1934 1.148310 GCTTCGTGCTACATGTGTGT 58.852 50.000 9.11 0.00 42.39 3.72
1903 1935 1.147473 TGCTTCGTGCTACATGTGTG 58.853 50.000 9.11 2.27 43.37 3.82
1904 1936 1.877637 TTGCTTCGTGCTACATGTGT 58.122 45.000 9.11 0.00 43.37 3.72
1905 1937 3.476295 AATTGCTTCGTGCTACATGTG 57.524 42.857 9.11 0.00 43.37 3.21
1912 1944 0.598065 GGGTGAAATTGCTTCGTGCT 59.402 50.000 5.00 0.00 43.37 4.40
1928 1960 6.999705 ATTGGCATCAAAACATATATGGGT 57.000 33.333 16.96 1.70 36.36 4.51
1982 2014 8.149647 TCCAAACAGAAAATTGTCATGCTTTAT 58.850 29.630 0.00 0.00 0.00 1.40
1992 2024 6.877236 ACTTGACATCCAAACAGAAAATTGT 58.123 32.000 0.00 0.00 33.76 2.71
1996 2028 6.929625 TGAAACTTGACATCCAAACAGAAAA 58.070 32.000 0.00 0.00 33.76 2.29
2042 2075 9.469807 CATGTTTTTACACTAAAGTTGGCATAA 57.530 29.630 0.00 0.00 0.00 1.90
2043 2076 8.634444 ACATGTTTTTACACTAAAGTTGGCATA 58.366 29.630 0.00 0.00 0.00 3.14
2044 2077 7.437862 CACATGTTTTTACACTAAAGTTGGCAT 59.562 33.333 0.00 0.00 0.00 4.40
2045 2078 6.754209 CACATGTTTTTACACTAAAGTTGGCA 59.246 34.615 0.00 0.00 0.00 4.92
2047 2080 7.167468 GCTCACATGTTTTTACACTAAAGTTGG 59.833 37.037 0.00 0.00 0.00 3.77
2071 2104 0.611200 TGGCATGTACTAACACCGCT 59.389 50.000 0.00 0.00 38.78 5.52
2073 2106 2.087501 TGTGGCATGTACTAACACCG 57.912 50.000 0.00 0.00 38.78 4.94
2157 2191 7.172190 CCAGTACTCTGCTTGATAATATTGTGG 59.828 40.741 0.00 0.00 40.09 4.17
2162 2196 6.425210 TGCCAGTACTCTGCTTGATAATAT 57.575 37.500 13.50 0.00 40.09 1.28
2182 2216 6.434028 TGGCTTATTCCTAACATGATAATGCC 59.566 38.462 0.00 7.65 0.00 4.40
2184 2218 8.025445 GCTTGGCTTATTCCTAACATGATAATG 58.975 37.037 0.00 0.00 0.00 1.90
2187 2221 6.003950 GGCTTGGCTTATTCCTAACATGATA 58.996 40.000 0.00 0.00 0.00 2.15
2218 2252 6.202762 CCTACACGCACATACATGTTGATTAT 59.797 38.462 2.30 0.00 39.39 1.28
2220 2254 4.332543 CCTACACGCACATACATGTTGATT 59.667 41.667 2.30 0.00 39.39 2.57
2231 2265 0.170561 GACTCGACCTACACGCACAT 59.829 55.000 0.00 0.00 0.00 3.21
2233 2267 1.154073 GGACTCGACCTACACGCAC 60.154 63.158 0.00 0.00 0.00 5.34
2234 2268 2.683859 CGGACTCGACCTACACGCA 61.684 63.158 0.00 0.00 39.00 5.24
2235 2269 2.099831 CGGACTCGACCTACACGC 59.900 66.667 0.00 0.00 39.00 5.34
2236 2270 1.742880 TCCGGACTCGACCTACACG 60.743 63.158 0.00 0.00 39.00 4.49
2258 2296 4.367023 GGACACGGCTACGCACCA 62.367 66.667 0.00 0.00 46.04 4.17
2266 2304 3.075005 ACGGCTATGGACACGGCT 61.075 61.111 0.00 0.00 0.00 5.52
2365 2403 2.201022 ACGTGAGTGGCTCGGTCTT 61.201 57.895 0.00 0.00 46.97 3.01
2465 2503 0.180406 CCGGCCACTAACCAGCTAAT 59.820 55.000 2.24 0.00 0.00 1.73
2523 2562 1.270412 GGTTGTACACACACCATCCGA 60.270 52.381 9.86 0.00 33.30 4.55
2541 2580 2.141067 AGGGGGCTTTTTATATCCGGT 58.859 47.619 0.00 0.00 0.00 5.28
2546 2585 7.534852 TCAATACATCAGGGGGCTTTTTATAT 58.465 34.615 0.00 0.00 0.00 0.86
2590 2633 2.413837 CTACATGGCTTACATACGGCC 58.586 52.381 0.00 0.00 45.45 6.13
2596 2639 8.163408 TCTTTATAATGGCTACATGGCTTACAT 58.837 33.333 0.00 0.00 41.57 2.29
2689 2736 3.463944 GGAGGTGAAAGACGAAGAACAA 58.536 45.455 0.00 0.00 0.00 2.83
2698 2745 2.544267 CACTTGAACGGAGGTGAAAGAC 59.456 50.000 0.00 0.00 32.12 3.01
2715 2762 3.783642 TCTAGCTACCTCTCCTCTCACTT 59.216 47.826 0.00 0.00 0.00 3.16
2741 2807 0.665835 GTGATGTGTTGGAACCGCAA 59.334 50.000 0.00 0.00 0.00 4.85
2755 2821 5.583457 TCTGCTATGAATGACACTTGTGATG 59.417 40.000 7.83 0.00 0.00 3.07
2756 2822 5.737860 TCTGCTATGAATGACACTTGTGAT 58.262 37.500 7.83 0.00 0.00 3.06
2757 2823 5.151297 TCTGCTATGAATGACACTTGTGA 57.849 39.130 7.83 0.00 0.00 3.58
2758 2824 5.673068 GCTTCTGCTATGAATGACACTTGTG 60.673 44.000 0.00 0.00 36.03 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.