Multiple sequence alignment - TraesCS2A01G336800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G336800 chr2A 100.000 2876 0 0 1 2876 570269624 570266749 0.000000e+00 5312.0
1 TraesCS2A01G336800 chr2A 90.900 989 77 5 823 1803 570502713 570501730 0.000000e+00 1315.0
2 TraesCS2A01G336800 chr2A 89.000 200 10 7 300 490 738780599 738780403 1.330000e-58 237.0
3 TraesCS2A01G336800 chr2D 95.729 2084 64 10 530 2600 419673299 419675370 0.000000e+00 3332.0
4 TraesCS2A01G336800 chr2D 89.590 999 71 12 813 1803 419479732 419480705 0.000000e+00 1238.0
5 TraesCS2A01G336800 chr2D 86.513 304 29 8 1 296 419672927 419673226 9.940000e-85 324.0
6 TraesCS2A01G336800 chr2D 97.273 110 3 0 2767 2876 419675350 419675459 1.360000e-43 187.0
7 TraesCS2A01G336800 chr2B 94.399 2089 84 10 530 2600 492087545 492089618 0.000000e+00 3179.0
8 TraesCS2A01G336800 chr2B 88.614 1010 75 14 812 1803 491961683 491962670 0.000000e+00 1192.0
9 TraesCS2A01G336800 chr2B 97.273 110 3 0 2767 2876 492089598 492089707 1.360000e-43 187.0
10 TraesCS2A01G336800 chr2B 92.105 76 5 1 679 754 491961391 491961465 3.920000e-19 106.0
11 TraesCS2A01G336800 chr3A 98.857 175 2 0 2596 2770 102876611 102876785 2.150000e-81 313.0
12 TraesCS2A01G336800 chr3A 89.691 194 15 4 300 491 698147202 698147012 2.860000e-60 243.0
13 TraesCS2A01G336800 chr1A 98.844 173 2 0 2598 2770 208903959 208903787 2.780000e-80 309.0
14 TraesCS2A01G336800 chr1A 90.957 188 11 4 306 487 111535568 111535755 6.150000e-62 248.0
15 TraesCS2A01G336800 chr7B 98.295 176 2 1 2597 2771 134048451 134048626 1.000000e-79 307.0
16 TraesCS2A01G336800 chr7B 98.276 174 2 1 2599 2771 611525478 611525305 1.290000e-78 303.0
17 TraesCS2A01G336800 chrUn 97.753 178 3 1 2599 2776 112608421 112608245 3.600000e-79 305.0
18 TraesCS2A01G336800 chrUn 88.235 51 5 1 983 1033 33171796 33171747 3.090000e-05 60.2
19 TraesCS2A01G336800 chr5B 98.830 171 2 0 2600 2770 609875848 609876018 3.600000e-79 305.0
20 TraesCS2A01G336800 chr5B 98.830 171 2 0 2599 2769 633962710 633962540 3.600000e-79 305.0
21 TraesCS2A01G336800 chr4B 98.276 174 2 1 2599 2771 106047638 106047811 1.290000e-78 303.0
22 TraesCS2A01G336800 chr1B 97.207 179 4 1 2599 2776 246770707 246770885 4.660000e-78 302.0
23 TraesCS2A01G336800 chr7A 93.258 178 8 2 306 479 617432616 617432793 2.840000e-65 259.0
24 TraesCS2A01G336800 chr7A 91.848 184 9 5 310 487 701621116 701621299 4.760000e-63 252.0
25 TraesCS2A01G336800 chr7A 91.304 184 11 3 306 484 577485397 577485214 2.210000e-61 246.0
26 TraesCS2A01G336800 chr5A 89.691 194 16 3 304 495 469102680 469102489 7.960000e-61 244.0
27 TraesCS2A01G336800 chr1D 90.811 185 14 2 310 492 246416358 246416541 7.960000e-61 244.0
28 TraesCS2A01G336800 chr5D 86.937 222 15 10 302 512 500853868 500854086 1.330000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G336800 chr2A 570266749 570269624 2875 True 5312 5312 100.000000 1 2876 1 chr2A.!!$R1 2875
1 TraesCS2A01G336800 chr2A 570501730 570502713 983 True 1315 1315 90.900000 823 1803 1 chr2A.!!$R2 980
2 TraesCS2A01G336800 chr2D 419672927 419675459 2532 False 1281 3332 93.171667 1 2876 3 chr2D.!!$F2 2875
3 TraesCS2A01G336800 chr2D 419479732 419480705 973 False 1238 1238 89.590000 813 1803 1 chr2D.!!$F1 990
4 TraesCS2A01G336800 chr2B 492087545 492089707 2162 False 1683 3179 95.836000 530 2876 2 chr2B.!!$F2 2346
5 TraesCS2A01G336800 chr2B 491961391 491962670 1279 False 649 1192 90.359500 679 1803 2 chr2B.!!$F1 1124

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 519 0.398522 AGCCACATACTCCCATCCGA 60.399 55.0 0.0 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2506 2751 0.112218 ACAGTGCCCCAGTATGCAAA 59.888 50.0 0.0 0.0 39.57 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 136 8.000709 TCCATCAACAGGCTATATTGATTCTTT 58.999 33.333 14.71 0.00 40.30 2.52
148 154 9.687210 TGATTCTTTGATTTTGAGATTCACAAG 57.313 29.630 0.00 0.00 29.70 3.16
164 170 8.808092 AGATTCACAAGTTTAAGCTACTACTCT 58.192 33.333 0.00 0.00 0.00 3.24
167 173 9.609346 TTCACAAGTTTAAGCTACTACTCTTTT 57.391 29.630 0.00 0.00 0.00 2.27
169 175 8.215132 CACAAGTTTAAGCTACTACTCTTTTCG 58.785 37.037 0.00 0.00 0.00 3.46
171 177 8.762426 CAAGTTTAAGCTACTACTCTTTTCGTT 58.238 33.333 0.00 0.00 0.00 3.85
173 179 8.976471 AGTTTAAGCTACTACTCTTTTCGTTTC 58.024 33.333 0.00 0.00 0.00 2.78
186 193 9.490379 ACTCTTTTCGTTTCATAATGTAAGACT 57.510 29.630 0.00 0.00 0.00 3.24
239 246 9.801873 AAAAACATTTTATATCATGGAACGGAG 57.198 29.630 0.00 0.00 0.00 4.63
241 248 6.003950 ACATTTTATATCATGGAACGGAGGG 58.996 40.000 0.00 0.00 0.00 4.30
242 249 5.897851 TTTTATATCATGGAACGGAGGGA 57.102 39.130 0.00 0.00 0.00 4.20
243 250 5.483685 TTTATATCATGGAACGGAGGGAG 57.516 43.478 0.00 0.00 0.00 4.30
244 251 1.048601 TATCATGGAACGGAGGGAGC 58.951 55.000 0.00 0.00 0.00 4.70
245 252 0.982852 ATCATGGAACGGAGGGAGCA 60.983 55.000 0.00 0.00 0.00 4.26
246 253 1.198094 TCATGGAACGGAGGGAGCAA 61.198 55.000 0.00 0.00 0.00 3.91
247 254 0.745845 CATGGAACGGAGGGAGCAAG 60.746 60.000 0.00 0.00 0.00 4.01
289 296 9.880254 TCATATAAAGATCCCAAAATTCCATCA 57.120 29.630 0.00 0.00 0.00 3.07
294 301 8.570068 AAAGATCCCAAAATTCCATCATTTTG 57.430 30.769 10.61 10.61 46.87 2.44
295 302 7.261688 AGATCCCAAAATTCCATCATTTTGT 57.738 32.000 14.63 0.98 46.30 2.83
296 303 7.333323 AGATCCCAAAATTCCATCATTTTGTC 58.667 34.615 14.63 8.23 46.30 3.18
297 304 5.803552 TCCCAAAATTCCATCATTTTGTCC 58.196 37.500 14.63 0.00 46.30 4.02
298 305 4.630940 CCCAAAATTCCATCATTTTGTCCG 59.369 41.667 14.63 3.65 46.30 4.79
299 306 5.237048 CCAAAATTCCATCATTTTGTCCGT 58.763 37.500 14.63 0.00 46.30 4.69
300 307 5.348451 CCAAAATTCCATCATTTTGTCCGTC 59.652 40.000 14.63 0.00 46.30 4.79
301 308 5.982890 AAATTCCATCATTTTGTCCGTCT 57.017 34.783 0.00 0.00 0.00 4.18
302 309 5.982890 AATTCCATCATTTTGTCCGTCTT 57.017 34.783 0.00 0.00 0.00 3.01
303 310 7.461182 AAATTCCATCATTTTGTCCGTCTTA 57.539 32.000 0.00 0.00 0.00 2.10
304 311 7.645058 AATTCCATCATTTTGTCCGTCTTAT 57.355 32.000 0.00 0.00 0.00 1.73
305 312 8.746052 AATTCCATCATTTTGTCCGTCTTATA 57.254 30.769 0.00 0.00 0.00 0.98
306 313 8.746052 ATTCCATCATTTTGTCCGTCTTATAA 57.254 30.769 0.00 0.00 0.00 0.98
307 314 7.786178 TCCATCATTTTGTCCGTCTTATAAG 57.214 36.000 6.11 6.11 0.00 1.73
308 315 7.561251 TCCATCATTTTGTCCGTCTTATAAGA 58.439 34.615 11.24 11.24 0.00 2.10
309 316 7.710907 TCCATCATTTTGTCCGTCTTATAAGAG 59.289 37.037 15.58 9.59 35.32 2.85
310 317 7.495934 CCATCATTTTGTCCGTCTTATAAGAGT 59.504 37.037 15.58 0.00 35.32 3.24
311 318 7.827819 TCATTTTGTCCGTCTTATAAGAGTG 57.172 36.000 15.58 10.89 35.32 3.51
312 319 7.383687 TCATTTTGTCCGTCTTATAAGAGTGT 58.616 34.615 15.58 0.00 35.32 3.55
313 320 7.330946 TCATTTTGTCCGTCTTATAAGAGTGTG 59.669 37.037 15.58 6.26 35.32 3.82
314 321 5.717078 TTGTCCGTCTTATAAGAGTGTGT 57.283 39.130 15.58 0.00 35.32 3.72
315 322 5.306532 TGTCCGTCTTATAAGAGTGTGTC 57.693 43.478 15.58 2.27 35.32 3.67
316 323 5.008331 TGTCCGTCTTATAAGAGTGTGTCT 58.992 41.667 15.58 0.00 35.32 3.41
317 324 6.175471 TGTCCGTCTTATAAGAGTGTGTCTA 58.825 40.000 15.58 0.00 35.32 2.59
318 325 6.315642 TGTCCGTCTTATAAGAGTGTGTCTAG 59.684 42.308 15.58 0.00 35.32 2.43
319 326 5.821470 TCCGTCTTATAAGAGTGTGTCTAGG 59.179 44.000 15.58 8.04 35.32 3.02
320 327 5.008811 CCGTCTTATAAGAGTGTGTCTAGGG 59.991 48.000 15.58 2.89 35.32 3.53
321 328 5.505985 CGTCTTATAAGAGTGTGTCTAGGGC 60.506 48.000 15.58 0.00 35.32 5.19
322 329 5.360144 GTCTTATAAGAGTGTGTCTAGGGCA 59.640 44.000 15.58 0.00 35.32 5.36
323 330 5.360144 TCTTATAAGAGTGTGTCTAGGGCAC 59.640 44.000 11.24 10.20 32.65 5.01
324 331 1.717032 AAGAGTGTGTCTAGGGCACA 58.283 50.000 14.22 14.22 43.60 4.57
325 332 1.944177 AGAGTGTGTCTAGGGCACAT 58.056 50.000 18.92 11.16 46.66 3.21
326 333 1.827969 AGAGTGTGTCTAGGGCACATC 59.172 52.381 18.92 16.48 46.66 3.06
327 334 1.827969 GAGTGTGTCTAGGGCACATCT 59.172 52.381 18.92 17.00 46.66 2.90
328 335 3.024547 GAGTGTGTCTAGGGCACATCTA 58.975 50.000 18.92 0.21 46.66 1.98
329 336 3.027412 AGTGTGTCTAGGGCACATCTAG 58.973 50.000 18.92 0.00 46.66 2.43
330 337 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
331 338 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
332 339 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
347 354 7.579589 CATCTAGATGTGCTCTACTTATTGC 57.420 40.000 22.42 0.00 35.28 3.56
348 355 6.715347 TCTAGATGTGCTCTACTTATTGCA 57.285 37.500 0.00 0.00 35.28 4.08
357 364 6.878317 TGCTCTACTTATTGCACATCTAAGT 58.122 36.000 12.25 12.25 38.75 2.24
358 365 6.758416 TGCTCTACTTATTGCACATCTAAGTG 59.242 38.462 15.31 0.00 42.37 3.16
359 366 6.980978 GCTCTACTTATTGCACATCTAAGTGA 59.019 38.462 15.31 11.30 42.05 3.41
360 367 7.168972 GCTCTACTTATTGCACATCTAAGTGAG 59.831 40.741 15.31 17.02 42.05 3.51
361 368 8.067751 TCTACTTATTGCACATCTAAGTGAGT 57.932 34.615 15.31 0.00 42.05 3.41
362 369 6.974932 ACTTATTGCACATCTAAGTGAGTG 57.025 37.500 8.56 0.00 42.05 3.51
363 370 6.701340 ACTTATTGCACATCTAAGTGAGTGA 58.299 36.000 8.56 0.00 42.05 3.41
364 371 7.161404 ACTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 8.56 0.00 42.05 3.18
365 372 7.826252 ACTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 8.56 0.00 42.05 2.57
366 373 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
367 374 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
368 375 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
369 376 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
370 377 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
371 378 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
372 379 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
373 380 7.493645 CACATCTAAGTGAGTGAATCAAGCATA 59.506 37.037 0.00 0.00 42.05 3.14
374 381 8.043113 ACATCTAAGTGAGTGAATCAAGCATAA 58.957 33.333 0.00 0.00 40.43 1.90
375 382 8.886719 CATCTAAGTGAGTGAATCAAGCATAAA 58.113 33.333 0.00 0.00 40.43 1.40
376 383 8.484641 TCTAAGTGAGTGAATCAAGCATAAAG 57.515 34.615 0.00 0.00 40.43 1.85
377 384 8.314021 TCTAAGTGAGTGAATCAAGCATAAAGA 58.686 33.333 0.00 0.00 40.43 2.52
378 385 7.750229 AAGTGAGTGAATCAAGCATAAAGAA 57.250 32.000 0.00 0.00 40.43 2.52
379 386 7.750229 AGTGAGTGAATCAAGCATAAAGAAA 57.250 32.000 0.00 0.00 40.43 2.52
380 387 8.169977 AGTGAGTGAATCAAGCATAAAGAAAA 57.830 30.769 0.00 0.00 40.43 2.29
381 388 8.632679 AGTGAGTGAATCAAGCATAAAGAAAAA 58.367 29.630 0.00 0.00 40.43 1.94
411 418 8.970691 AAAAGAAAATATCCACACAAATCTCG 57.029 30.769 0.00 0.00 0.00 4.04
412 419 7.921786 AAGAAAATATCCACACAAATCTCGA 57.078 32.000 0.00 0.00 0.00 4.04
413 420 8.511604 AAGAAAATATCCACACAAATCTCGAT 57.488 30.769 0.00 0.00 0.00 3.59
414 421 7.923888 AGAAAATATCCACACAAATCTCGATG 58.076 34.615 0.00 0.00 0.00 3.84
415 422 7.554118 AGAAAATATCCACACAAATCTCGATGT 59.446 33.333 0.00 0.00 0.00 3.06
416 423 8.731275 AAAATATCCACACAAATCTCGATGTA 57.269 30.769 0.00 0.00 0.00 2.29
417 424 8.731275 AAATATCCACACAAATCTCGATGTAA 57.269 30.769 0.00 0.00 0.00 2.41
418 425 7.953158 ATATCCACACAAATCTCGATGTAAG 57.047 36.000 0.00 0.00 0.00 2.34
419 426 5.400066 TCCACACAAATCTCGATGTAAGA 57.600 39.130 0.00 0.00 0.00 2.10
420 427 5.977635 TCCACACAAATCTCGATGTAAGAT 58.022 37.500 0.00 0.00 34.96 2.40
421 428 6.042777 TCCACACAAATCTCGATGTAAGATC 58.957 40.000 0.00 0.00 32.29 2.75
422 429 5.812127 CCACACAAATCTCGATGTAAGATCA 59.188 40.000 0.00 0.00 32.29 2.92
423 430 6.313658 CCACACAAATCTCGATGTAAGATCAA 59.686 38.462 0.00 0.00 32.29 2.57
424 431 7.011763 CCACACAAATCTCGATGTAAGATCAAT 59.988 37.037 0.00 0.00 32.29 2.57
425 432 9.034544 CACACAAATCTCGATGTAAGATCAATA 57.965 33.333 0.00 0.00 32.29 1.90
426 433 9.599866 ACACAAATCTCGATGTAAGATCAATAA 57.400 29.630 0.00 0.00 32.29 1.40
427 434 9.855361 CACAAATCTCGATGTAAGATCAATAAC 57.145 33.333 0.00 0.00 32.29 1.89
428 435 9.599866 ACAAATCTCGATGTAAGATCAATAACA 57.400 29.630 0.00 0.00 32.29 2.41
459 466 8.785329 TTTAGATGTGCAATACTTATGACACA 57.215 30.769 0.00 0.00 38.34 3.72
460 467 8.962884 TTAGATGTGCAATACTTATGACACAT 57.037 30.769 13.39 13.39 42.56 3.21
462 469 7.488187 GATGTGCAATACTTATGACACATCT 57.512 36.000 22.83 7.26 45.69 2.90
463 470 8.593492 GATGTGCAATACTTATGACACATCTA 57.407 34.615 22.83 2.36 45.69 1.98
464 471 8.599055 ATGTGCAATACTTATGACACATCTAG 57.401 34.615 9.84 0.00 39.26 2.43
465 472 7.781056 TGTGCAATACTTATGACACATCTAGA 58.219 34.615 0.00 0.00 33.26 2.43
466 473 8.424133 TGTGCAATACTTATGACACATCTAGAT 58.576 33.333 0.00 0.00 33.26 1.98
467 474 8.706936 GTGCAATACTTATGACACATCTAGATG 58.293 37.037 27.63 27.63 44.15 2.90
498 505 9.849166 TTAGCAACTGTTTTTATAAATAGCCAC 57.151 29.630 0.00 0.00 36.32 5.01
512 519 0.398522 AGCCACATACTCCCATCCGA 60.399 55.000 0.00 0.00 0.00 4.55
531 538 2.156891 CGAAGATCCGCTCGTTCAAAAA 59.843 45.455 0.00 0.00 0.00 1.94
631 665 1.144057 GTAGCCCACCTGTCATCGG 59.856 63.158 0.00 0.00 0.00 4.18
633 667 0.616395 TAGCCCACCTGTCATCGGAA 60.616 55.000 0.00 0.00 0.00 4.30
652 687 3.246619 GAAGGTCAGCGTCTTGAGTAAG 58.753 50.000 0.00 0.00 35.16 2.34
901 1117 3.953352 TCATCATCTCCCCTAAATCCCA 58.047 45.455 0.00 0.00 0.00 4.37
1028 1268 1.296715 GGAACCGCATCTCCAGTGT 59.703 57.895 0.00 0.00 0.00 3.55
1074 1314 1.820581 CGTCCCTTTCCGCTCCATA 59.179 57.895 0.00 0.00 0.00 2.74
1250 1490 1.277580 ATGTCCCTGCTCTTCCTGGG 61.278 60.000 0.00 0.00 43.31 4.45
1395 1635 3.353836 GCGCGGGCTCTCAACAAA 61.354 61.111 18.33 0.00 35.83 2.83
1472 1712 1.070786 TTTCGAGGTCGCTGGCTTT 59.929 52.632 0.00 0.00 39.60 3.51
1503 1743 2.670148 GGAGGCCAACACGGAGGAT 61.670 63.158 5.01 0.00 36.56 3.24
1791 2031 7.984050 TCTCTTCAGTGGATGATCAATAAGTTC 59.016 37.037 0.00 0.00 37.89 3.01
1829 2069 1.945819 GCCAGAGTTTTCATCCGAGCA 60.946 52.381 0.00 0.00 0.00 4.26
2142 2384 3.332919 ACTAGATGCTTCAACTGCACAG 58.667 45.455 0.00 0.00 43.59 3.66
2171 2413 0.533085 GCTATCTGCGGGACCCTTTC 60.533 60.000 9.41 0.00 0.00 2.62
2224 2469 6.426633 TGTGTGTAGTCTTTTGGTACATGATG 59.573 38.462 0.00 0.00 39.30 3.07
2225 2470 6.426937 GTGTGTAGTCTTTTGGTACATGATGT 59.573 38.462 2.65 2.65 39.30 3.06
2334 2579 3.924144 TGATTTACAAGCCACATTTGCC 58.076 40.909 0.00 0.00 0.00 4.52
2366 2611 5.123936 TGATTTCTTCATGATCAGGCTGAG 58.876 41.667 23.24 9.22 0.00 3.35
2453 2698 5.401376 GCTGTTTAATTTTTCTTGGACGGTC 59.599 40.000 0.00 0.00 0.00 4.79
2480 2725 7.817418 ATCTTGGTTTGCTAGTTTTTCTGTA 57.183 32.000 0.00 0.00 0.00 2.74
2506 2751 2.472695 TCGTGCTTCTATTGGCAGTT 57.527 45.000 0.00 0.00 39.22 3.16
2523 2768 1.203050 AGTTTTGCATACTGGGGCACT 60.203 47.619 1.52 0.00 40.23 4.40
2524 2769 1.067635 GTTTTGCATACTGGGGCACTG 60.068 52.381 0.00 0.00 40.23 3.66
2600 2847 8.450964 GCTATAAAGTCAGCTGTCAATTGTAAA 58.549 33.333 14.67 0.00 34.86 2.01
2603 2850 5.695851 AGTCAGCTGTCAATTGTAAAAGG 57.304 39.130 14.67 0.00 0.00 3.11
2604 2851 5.376625 AGTCAGCTGTCAATTGTAAAAGGA 58.623 37.500 14.67 0.00 0.00 3.36
2605 2852 5.239525 AGTCAGCTGTCAATTGTAAAAGGAC 59.760 40.000 14.67 8.28 34.67 3.85
2606 2853 5.008613 GTCAGCTGTCAATTGTAAAAGGACA 59.991 40.000 14.67 0.00 39.55 4.02
2611 2858 6.817765 TGTCAATTGTAAAAGGACAGATCC 57.182 37.500 5.13 0.00 46.69 3.36
2622 2869 3.827008 GGACAGATCCAGTGCATAGAA 57.173 47.619 0.00 0.00 45.47 2.10
2623 2870 3.726607 GGACAGATCCAGTGCATAGAAG 58.273 50.000 0.00 0.00 45.47 2.85
2624 2871 3.129871 GACAGATCCAGTGCATAGAAGC 58.870 50.000 0.00 0.00 0.00 3.86
2625 2872 2.770802 ACAGATCCAGTGCATAGAAGCT 59.229 45.455 0.00 0.00 34.99 3.74
2626 2873 3.181467 ACAGATCCAGTGCATAGAAGCTC 60.181 47.826 0.00 0.00 34.99 4.09
2627 2874 2.368221 AGATCCAGTGCATAGAAGCTCC 59.632 50.000 0.00 0.00 34.99 4.70
2628 2875 0.833287 TCCAGTGCATAGAAGCTCCC 59.167 55.000 0.00 0.00 34.99 4.30
2629 2876 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
2630 2877 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
2631 2878 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
2632 2879 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
2633 2880 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
2634 2881 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
2635 2882 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
2636 2883 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
2637 2884 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
2645 2892 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
2646 2893 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
2647 2894 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
2648 2895 2.153401 CACAAGGTGGGGTCTGGGA 61.153 63.158 0.00 0.00 0.00 4.37
2649 2896 1.386772 ACAAGGTGGGGTCTGGGAA 60.387 57.895 0.00 0.00 0.00 3.97
2650 2897 1.380302 CAAGGTGGGGTCTGGGAAG 59.620 63.158 0.00 0.00 0.00 3.46
2651 2898 1.852626 AAGGTGGGGTCTGGGAAGG 60.853 63.158 0.00 0.00 0.00 3.46
2652 2899 3.339093 GGTGGGGTCTGGGAAGGG 61.339 72.222 0.00 0.00 0.00 3.95
2653 2900 2.204090 GTGGGGTCTGGGAAGGGA 60.204 66.667 0.00 0.00 0.00 4.20
2654 2901 1.619669 GTGGGGTCTGGGAAGGGAT 60.620 63.158 0.00 0.00 0.00 3.85
2655 2902 1.165782 TGGGGTCTGGGAAGGGATT 59.834 57.895 0.00 0.00 0.00 3.01
2656 2903 0.423956 TGGGGTCTGGGAAGGGATTA 59.576 55.000 0.00 0.00 0.00 1.75
2657 2904 1.012049 TGGGGTCTGGGAAGGGATTAT 59.988 52.381 0.00 0.00 0.00 1.28
2658 2905 2.254293 TGGGGTCTGGGAAGGGATTATA 59.746 50.000 0.00 0.00 0.00 0.98
2659 2906 2.913617 GGGGTCTGGGAAGGGATTATAG 59.086 54.545 0.00 0.00 0.00 1.31
2660 2907 2.913617 GGGTCTGGGAAGGGATTATAGG 59.086 54.545 0.00 0.00 0.00 2.57
2661 2908 3.441054 GGGTCTGGGAAGGGATTATAGGA 60.441 52.174 0.00 0.00 0.00 2.94
2662 2909 4.240323 GGTCTGGGAAGGGATTATAGGAA 58.760 47.826 0.00 0.00 0.00 3.36
2663 2910 4.041815 GGTCTGGGAAGGGATTATAGGAAC 59.958 50.000 0.00 0.00 0.00 3.62
2664 2911 4.041815 GTCTGGGAAGGGATTATAGGAACC 59.958 50.000 0.00 0.00 0.00 3.62
2665 2912 4.077387 TCTGGGAAGGGATTATAGGAACCT 60.077 45.833 0.00 0.00 0.00 3.50
2666 2913 5.138996 TCTGGGAAGGGATTATAGGAACCTA 59.861 44.000 2.93 2.93 0.00 3.08
2667 2914 5.412384 TGGGAAGGGATTATAGGAACCTAG 58.588 45.833 6.72 0.00 31.45 3.02
2668 2915 5.102346 TGGGAAGGGATTATAGGAACCTAGT 60.102 44.000 6.72 0.00 31.45 2.57
2669 2916 5.484644 GGGAAGGGATTATAGGAACCTAGTC 59.515 48.000 6.72 4.93 31.45 2.59
2670 2917 6.324544 GGAAGGGATTATAGGAACCTAGTCT 58.675 44.000 6.72 0.00 31.45 3.24
2671 2918 6.788456 GGAAGGGATTATAGGAACCTAGTCTT 59.212 42.308 6.72 4.18 31.45 3.01
2672 2919 7.954620 GGAAGGGATTATAGGAACCTAGTCTTA 59.045 40.741 6.72 0.00 31.45 2.10
2673 2920 8.724113 AAGGGATTATAGGAACCTAGTCTTAC 57.276 38.462 6.72 0.00 31.45 2.34
2674 2921 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
2675 2922 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
2676 2923 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
2677 2924 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
2678 2925 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
2679 2926 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
2680 2927 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
2681 2928 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
2682 2929 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
2683 2930 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
2684 2931 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
2685 2932 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
2686 2933 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
2697 2944 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
2698 2945 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
2699 2946 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
2700 2947 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
2702 2949 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
2703 2950 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
2704 2951 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
2705 2952 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
2706 2953 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
2707 2954 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
2708 2955 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
2709 2956 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
2718 2965 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
2719 2966 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
2720 2967 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
2721 2968 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
2722 2969 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
2723 2970 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
2724 2971 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
2725 2972 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
2726 2973 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
2727 2974 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
2738 2985 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
2739 2986 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
2740 2987 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
2741 2988 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
2742 2989 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
2743 2990 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
2744 2991 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
2750 2997 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
2751 2998 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
2752 2999 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
2753 3000 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
2754 3001 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
2755 3002 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
2756 3003 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
2768 3015 4.684134 GCCAGGCCTGCCCTCAAA 62.684 66.667 28.39 0.00 44.09 2.69
2769 3016 2.362120 CCAGGCCTGCCCTCAAAG 60.362 66.667 28.39 7.14 44.09 2.77
2770 3017 2.437897 CAGGCCTGCCCTCAAAGT 59.562 61.111 22.33 0.00 44.09 2.66
2771 3018 1.676967 CAGGCCTGCCCTCAAAGTC 60.677 63.158 22.33 0.00 44.09 3.01
2772 3019 2.156098 AGGCCTGCCCTCAAAGTCA 61.156 57.895 3.11 0.00 41.21 3.41
2773 3020 1.676967 GGCCTGCCCTCAAAGTCAG 60.677 63.158 0.00 0.00 0.00 3.51
2774 3021 2.338785 GCCTGCCCTCAAAGTCAGC 61.339 63.158 0.00 0.00 0.00 4.26
2775 3022 1.377994 CCTGCCCTCAAAGTCAGCT 59.622 57.895 0.00 0.00 0.00 4.24
2776 3023 0.959372 CCTGCCCTCAAAGTCAGCTG 60.959 60.000 7.63 7.63 0.00 4.24
2777 3024 0.250640 CTGCCCTCAAAGTCAGCTGT 60.251 55.000 14.67 0.00 0.00 4.40
2778 3025 0.250467 TGCCCTCAAAGTCAGCTGTC 60.250 55.000 14.67 8.44 0.00 3.51
2779 3026 0.250467 GCCCTCAAAGTCAGCTGTCA 60.250 55.000 14.67 0.00 0.00 3.58
2780 3027 1.815408 GCCCTCAAAGTCAGCTGTCAA 60.815 52.381 14.67 0.00 0.00 3.18
2781 3028 2.787994 CCCTCAAAGTCAGCTGTCAAT 58.212 47.619 14.67 0.00 0.00 2.57
2782 3029 3.152341 CCCTCAAAGTCAGCTGTCAATT 58.848 45.455 14.67 4.96 0.00 2.32
2783 3030 3.057736 CCCTCAAAGTCAGCTGTCAATTG 60.058 47.826 14.67 16.33 0.00 2.32
2784 3031 3.567164 CCTCAAAGTCAGCTGTCAATTGT 59.433 43.478 14.67 0.00 0.00 2.71
2785 3032 4.756642 CCTCAAAGTCAGCTGTCAATTGTA 59.243 41.667 14.67 7.30 0.00 2.41
2786 3033 5.239306 CCTCAAAGTCAGCTGTCAATTGTAA 59.761 40.000 14.67 2.92 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 63 0.686441 ACTCATAGCTACCGTGCCCA 60.686 55.000 0.00 0.00 0.00 5.36
64 70 1.710816 AGCTGGGACTCATAGCTACC 58.289 55.000 0.00 0.00 45.30 3.18
130 136 8.632679 AGCTTAAACTTGTGAATCTCAAAATCA 58.367 29.630 0.00 0.00 0.00 2.57
148 154 8.758715 TGAAACGAAAAGAGTAGTAGCTTAAAC 58.241 33.333 0.00 0.00 0.00 2.01
154 160 8.870879 ACATTATGAAACGAAAAGAGTAGTAGC 58.129 33.333 0.00 0.00 0.00 3.58
219 226 6.448369 TCCCTCCGTTCCATGATATAAAAT 57.552 37.500 0.00 0.00 0.00 1.82
221 228 4.262894 GCTCCCTCCGTTCCATGATATAAA 60.263 45.833 0.00 0.00 0.00 1.40
231 238 0.831307 ATACTTGCTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
233 240 6.491383 TCTATATATACTTGCTCCCTCCGTT 58.509 40.000 0.00 0.00 0.00 4.44
278 285 6.345096 AGACGGACAAAATGATGGAATTTT 57.655 33.333 0.00 0.00 39.71 1.82
282 289 8.044309 TCTTATAAGACGGACAAAATGATGGAA 58.956 33.333 11.24 0.00 0.00 3.53
284 291 7.495934 ACTCTTATAAGACGGACAAAATGATGG 59.504 37.037 11.24 0.00 0.00 3.51
285 292 8.331022 CACTCTTATAAGACGGACAAAATGATG 58.669 37.037 11.24 0.00 0.00 3.07
286 293 8.041323 ACACTCTTATAAGACGGACAAAATGAT 58.959 33.333 11.24 0.00 0.00 2.45
287 294 7.330946 CACACTCTTATAAGACGGACAAAATGA 59.669 37.037 11.24 0.00 0.00 2.57
289 296 7.159372 ACACACTCTTATAAGACGGACAAAAT 58.841 34.615 11.24 0.00 0.00 1.82
290 297 6.518493 ACACACTCTTATAAGACGGACAAAA 58.482 36.000 11.24 0.00 0.00 2.44
294 301 5.564048 AGACACACTCTTATAAGACGGAC 57.436 43.478 11.24 2.63 0.00 4.79
295 302 5.821470 CCTAGACACACTCTTATAAGACGGA 59.179 44.000 11.24 0.00 0.00 4.69
296 303 5.008811 CCCTAGACACACTCTTATAAGACGG 59.991 48.000 11.24 8.74 0.00 4.79
297 304 5.505985 GCCCTAGACACACTCTTATAAGACG 60.506 48.000 11.24 10.01 0.00 4.18
298 305 5.360144 TGCCCTAGACACACTCTTATAAGAC 59.640 44.000 11.24 1.07 0.00 3.01
299 306 5.360144 GTGCCCTAGACACACTCTTATAAGA 59.640 44.000 14.42 14.42 37.96 2.10
300 307 5.127194 TGTGCCCTAGACACACTCTTATAAG 59.873 44.000 12.81 6.11 42.88 1.73
301 308 5.020795 TGTGCCCTAGACACACTCTTATAA 58.979 41.667 12.81 0.00 42.88 0.98
302 309 4.606210 TGTGCCCTAGACACACTCTTATA 58.394 43.478 12.81 0.00 42.88 0.98
303 310 3.441101 TGTGCCCTAGACACACTCTTAT 58.559 45.455 12.81 0.00 42.88 1.73
304 311 2.884320 TGTGCCCTAGACACACTCTTA 58.116 47.619 12.81 0.00 42.88 2.10
305 312 1.717032 TGTGCCCTAGACACACTCTT 58.283 50.000 12.81 0.00 42.88 2.85
306 313 3.457560 TGTGCCCTAGACACACTCT 57.542 52.632 12.81 0.00 42.88 3.24
311 318 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
323 330 7.150640 TGCAATAAGTAGAGCACATCTAGATG 58.849 38.462 27.63 27.63 41.28 2.90
324 331 7.295322 TGCAATAAGTAGAGCACATCTAGAT 57.705 36.000 0.00 0.00 41.28 1.98
325 332 6.715347 TGCAATAAGTAGAGCACATCTAGA 57.285 37.500 0.00 0.00 41.28 2.43
333 340 6.758416 CACTTAGATGTGCAATAAGTAGAGCA 59.242 38.462 12.07 0.00 37.59 4.26
334 341 6.980978 TCACTTAGATGTGCAATAAGTAGAGC 59.019 38.462 12.07 0.00 37.59 4.09
335 342 8.194104 ACTCACTTAGATGTGCAATAAGTAGAG 58.806 37.037 21.28 21.28 37.59 2.43
336 343 7.976175 CACTCACTTAGATGTGCAATAAGTAGA 59.024 37.037 12.07 11.12 37.59 2.59
337 344 7.976175 TCACTCACTTAGATGTGCAATAAGTAG 59.024 37.037 12.07 11.87 37.59 2.57
338 345 7.836842 TCACTCACTTAGATGTGCAATAAGTA 58.163 34.615 12.07 4.39 37.59 2.24
339 346 6.701340 TCACTCACTTAGATGTGCAATAAGT 58.299 36.000 8.35 8.35 39.67 2.24
340 347 7.601073 TTCACTCACTTAGATGTGCAATAAG 57.399 36.000 0.00 0.00 37.81 1.73
341 348 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
342 349 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
343 350 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
344 351 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
345 352 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
346 353 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
347 354 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
348 355 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
349 356 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
350 357 9.107177 CTTTATGCTTGATTCACTCACTTAGAT 57.893 33.333 0.00 0.00 32.17 1.98
351 358 8.314021 TCTTTATGCTTGATTCACTCACTTAGA 58.686 33.333 0.00 0.00 32.17 2.10
352 359 8.484641 TCTTTATGCTTGATTCACTCACTTAG 57.515 34.615 0.00 0.00 32.17 2.18
353 360 8.846943 TTCTTTATGCTTGATTCACTCACTTA 57.153 30.769 0.00 0.00 32.17 2.24
354 361 7.750229 TTCTTTATGCTTGATTCACTCACTT 57.250 32.000 0.00 0.00 32.17 3.16
355 362 7.750229 TTTCTTTATGCTTGATTCACTCACT 57.250 32.000 0.00 0.00 32.17 3.41
356 363 8.801715 TTTTTCTTTATGCTTGATTCACTCAC 57.198 30.769 0.00 0.00 32.17 3.51
385 392 9.410556 CGAGATTTGTGTGGATATTTTCTTTTT 57.589 29.630 0.00 0.00 0.00 1.94
386 393 8.792633 TCGAGATTTGTGTGGATATTTTCTTTT 58.207 29.630 0.00 0.00 0.00 2.27
387 394 8.335532 TCGAGATTTGTGTGGATATTTTCTTT 57.664 30.769 0.00 0.00 0.00 2.52
388 395 7.921786 TCGAGATTTGTGTGGATATTTTCTT 57.078 32.000 0.00 0.00 0.00 2.52
389 396 7.554118 ACATCGAGATTTGTGTGGATATTTTCT 59.446 33.333 0.00 0.00 0.00 2.52
390 397 7.697691 ACATCGAGATTTGTGTGGATATTTTC 58.302 34.615 0.00 0.00 0.00 2.29
391 398 7.630242 ACATCGAGATTTGTGTGGATATTTT 57.370 32.000 0.00 0.00 0.00 1.82
392 399 8.731275 TTACATCGAGATTTGTGTGGATATTT 57.269 30.769 0.00 0.00 0.00 1.40
393 400 8.204160 TCTTACATCGAGATTTGTGTGGATATT 58.796 33.333 0.00 0.00 0.00 1.28
394 401 7.726216 TCTTACATCGAGATTTGTGTGGATAT 58.274 34.615 0.00 0.00 0.00 1.63
395 402 7.107639 TCTTACATCGAGATTTGTGTGGATA 57.892 36.000 0.00 0.00 0.00 2.59
396 403 5.977635 TCTTACATCGAGATTTGTGTGGAT 58.022 37.500 0.00 0.00 0.00 3.41
397 404 5.400066 TCTTACATCGAGATTTGTGTGGA 57.600 39.130 0.00 0.00 0.00 4.02
398 405 5.812127 TGATCTTACATCGAGATTTGTGTGG 59.188 40.000 0.00 0.00 34.13 4.17
399 406 6.892310 TGATCTTACATCGAGATTTGTGTG 57.108 37.500 0.00 0.00 34.13 3.82
400 407 9.599866 TTATTGATCTTACATCGAGATTTGTGT 57.400 29.630 0.00 0.00 34.13 3.72
401 408 9.855361 GTTATTGATCTTACATCGAGATTTGTG 57.145 33.333 0.00 0.00 34.13 3.33
402 409 9.599866 TGTTATTGATCTTACATCGAGATTTGT 57.400 29.630 0.00 0.00 34.13 2.83
433 440 9.394767 TGTGTCATAAGTATTGCACATCTAAAT 57.605 29.630 0.00 0.00 32.79 1.40
434 441 8.785329 TGTGTCATAAGTATTGCACATCTAAA 57.215 30.769 0.00 0.00 32.79 1.85
435 442 8.962884 ATGTGTCATAAGTATTGCACATCTAA 57.037 30.769 0.00 0.00 41.81 2.10
439 446 8.424133 TCTAGATGTGTCATAAGTATTGCACAT 58.576 33.333 13.21 13.21 46.19 3.21
440 447 7.781056 TCTAGATGTGTCATAAGTATTGCACA 58.219 34.615 0.00 0.00 40.42 4.57
441 448 8.706936 CATCTAGATGTGTCATAAGTATTGCAC 58.293 37.037 22.42 0.00 34.23 4.57
442 449 8.822652 CATCTAGATGTGTCATAAGTATTGCA 57.177 34.615 22.42 0.00 34.23 4.08
472 479 9.849166 GTGGCTATTTATAAAAACAGTTGCTAA 57.151 29.630 1.21 0.00 0.00 3.09
473 480 9.015367 TGTGGCTATTTATAAAAACAGTTGCTA 57.985 29.630 1.21 0.00 0.00 3.49
474 481 7.891561 TGTGGCTATTTATAAAAACAGTTGCT 58.108 30.769 1.21 0.00 0.00 3.91
475 482 8.702163 ATGTGGCTATTTATAAAAACAGTTGC 57.298 30.769 1.21 0.00 0.00 4.17
480 487 9.127277 GGGAGTATGTGGCTATTTATAAAAACA 57.873 33.333 1.21 3.35 0.00 2.83
481 488 9.127277 TGGGAGTATGTGGCTATTTATAAAAAC 57.873 33.333 1.21 0.00 0.00 2.43
482 489 9.875708 ATGGGAGTATGTGGCTATTTATAAAAA 57.124 29.630 1.21 0.00 0.00 1.94
483 490 9.515226 GATGGGAGTATGTGGCTATTTATAAAA 57.485 33.333 1.21 0.00 0.00 1.52
484 491 8.107095 GGATGGGAGTATGTGGCTATTTATAAA 58.893 37.037 0.00 0.00 0.00 1.40
485 492 7.580688 CGGATGGGAGTATGTGGCTATTTATAA 60.581 40.741 0.00 0.00 0.00 0.98
486 493 6.127168 CGGATGGGAGTATGTGGCTATTTATA 60.127 42.308 0.00 0.00 0.00 0.98
498 505 2.094494 CGGATCTTCGGATGGGAGTATG 60.094 54.545 0.00 0.00 34.38 2.39
531 538 3.560105 GTGTACTAGGTCCGGGAGTATT 58.440 50.000 0.00 0.00 0.00 1.89
533 540 1.212935 GGTGTACTAGGTCCGGGAGTA 59.787 57.143 0.00 1.86 0.00 2.59
631 665 3.246619 CTTACTCAAGACGCTGACCTTC 58.753 50.000 0.00 0.00 33.20 3.46
633 667 1.546476 CCTTACTCAAGACGCTGACCT 59.454 52.381 0.00 0.00 33.20 3.85
652 687 1.609841 CGGTACCACTTTGAGGGTTCC 60.610 57.143 13.54 0.00 40.22 3.62
746 787 2.009774 CCGTGTGGGTCTCATGATTTC 58.990 52.381 0.00 0.00 0.00 2.17
873 1082 2.688477 AGGGGAGATGATGAAGAGTCC 58.312 52.381 0.00 0.00 0.00 3.85
901 1117 0.249073 CTTGGAGATCGATCGGCGTT 60.249 55.000 19.33 0.00 41.80 4.84
1028 1268 2.343758 GCTTCAGCAGACCACCGA 59.656 61.111 0.00 0.00 41.59 4.69
1472 1712 2.964310 GCCTCCTGCTCCAGCTCAA 61.964 63.158 0.00 0.00 42.66 3.02
1503 1743 1.098129 CCTCGCTCTCGATGTCCTCA 61.098 60.000 0.00 0.00 44.56 3.86
1514 1754 4.421479 CGCCGTTCACCTCGCTCT 62.421 66.667 0.00 0.00 0.00 4.09
1758 1998 4.019858 TCATCCACTGAAGAGACTCGATT 58.980 43.478 0.00 0.00 0.00 3.34
1791 2031 4.873810 TCCCCGGATTGCATGCCG 62.874 66.667 16.68 17.93 46.80 5.69
1829 2069 0.601311 GCTTGTCTCTGACACGGCTT 60.601 55.000 13.54 0.00 42.60 4.35
2043 2285 8.637099 TGGATATTACATATATCTCTGCAGAGC 58.363 37.037 34.48 17.05 41.80 4.09
2225 2470 9.218440 GGAAGATTTTTGCATTTAGAAATCCAA 57.782 29.630 12.41 0.00 38.59 3.53
2299 2544 6.019881 GCTTGTAAATCAACACAGTCAAAACC 60.020 38.462 0.00 0.00 32.18 3.27
2334 2579 5.791367 TCATGAAGAAATCAAGCGAGAAG 57.209 39.130 0.00 0.00 42.54 2.85
2366 2611 1.613925 GAACCCTCCCTGTTTTCAAGC 59.386 52.381 0.00 0.00 0.00 4.01
2440 2685 3.568007 CCAAGATTTGACCGTCCAAGAAA 59.432 43.478 0.00 0.00 0.00 2.52
2453 2698 7.492344 ACAGAAAAACTAGCAAACCAAGATTTG 59.508 33.333 0.00 0.00 41.62 2.32
2480 2725 3.812053 GCCAATAGAAGCACGAATCAGAT 59.188 43.478 0.00 0.00 0.00 2.90
2506 2751 0.112218 ACAGTGCCCCAGTATGCAAA 59.888 50.000 0.00 0.00 39.57 3.68
2516 2761 3.270877 CAGTGAAGTAATACAGTGCCCC 58.729 50.000 0.00 0.00 32.13 5.80
2523 2768 7.564793 AGCATATCAACCAGTGAAGTAATACA 58.435 34.615 0.00 0.00 40.50 2.29
2524 2769 9.712305 ATAGCATATCAACCAGTGAAGTAATAC 57.288 33.333 0.00 0.00 40.50 1.89
2600 2847 3.378512 TCTATGCACTGGATCTGTCCTT 58.621 45.455 0.00 0.00 45.32 3.36
2601 2848 3.037851 TCTATGCACTGGATCTGTCCT 57.962 47.619 0.00 0.00 45.32 3.85
2602 2849 3.726607 CTTCTATGCACTGGATCTGTCC 58.273 50.000 0.00 0.00 45.31 4.02
2603 2850 3.129871 GCTTCTATGCACTGGATCTGTC 58.870 50.000 0.00 0.00 0.00 3.51
2604 2851 2.770802 AGCTTCTATGCACTGGATCTGT 59.229 45.455 0.00 0.00 34.99 3.41
2605 2852 3.391965 GAGCTTCTATGCACTGGATCTG 58.608 50.000 0.00 0.00 34.99 2.90
2606 2853 2.368221 GGAGCTTCTATGCACTGGATCT 59.632 50.000 0.00 0.00 34.99 2.75
2607 2854 2.549778 GGGAGCTTCTATGCACTGGATC 60.550 54.545 0.00 0.00 34.99 3.36
2608 2855 1.419387 GGGAGCTTCTATGCACTGGAT 59.581 52.381 0.00 0.00 34.99 3.41
2609 2856 0.833287 GGGAGCTTCTATGCACTGGA 59.167 55.000 0.00 0.00 34.99 3.86
2610 2857 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
2611 2858 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
2612 2859 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
2613 2860 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
2614 2861 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
2615 2862 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
2616 2863 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
2617 2864 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
2618 2865 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
2619 2866 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
2620 2867 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
2621 2868 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
2628 2875 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
2629 2876 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
2630 2877 1.715019 TTCCCAGACCCCACCTTGTG 61.715 60.000 0.00 0.00 0.00 3.33
2631 2878 1.386772 TTCCCAGACCCCACCTTGT 60.387 57.895 0.00 0.00 0.00 3.16
2632 2879 1.380302 CTTCCCAGACCCCACCTTG 59.620 63.158 0.00 0.00 0.00 3.61
2633 2880 1.852626 CCTTCCCAGACCCCACCTT 60.853 63.158 0.00 0.00 0.00 3.50
2634 2881 2.204151 CCTTCCCAGACCCCACCT 60.204 66.667 0.00 0.00 0.00 4.00
2635 2882 3.339093 CCCTTCCCAGACCCCACC 61.339 72.222 0.00 0.00 0.00 4.61
2636 2883 1.214992 AATCCCTTCCCAGACCCCAC 61.215 60.000 0.00 0.00 0.00 4.61
2637 2884 0.423956 TAATCCCTTCCCAGACCCCA 59.576 55.000 0.00 0.00 0.00 4.96
2638 2885 1.834540 ATAATCCCTTCCCAGACCCC 58.165 55.000 0.00 0.00 0.00 4.95
2639 2886 2.913617 CCTATAATCCCTTCCCAGACCC 59.086 54.545 0.00 0.00 0.00 4.46
2640 2887 3.870559 TCCTATAATCCCTTCCCAGACC 58.129 50.000 0.00 0.00 0.00 3.85
2641 2888 4.041815 GGTTCCTATAATCCCTTCCCAGAC 59.958 50.000 0.00 0.00 0.00 3.51
2642 2889 4.077387 AGGTTCCTATAATCCCTTCCCAGA 60.077 45.833 0.00 0.00 0.00 3.86
2643 2890 4.243643 AGGTTCCTATAATCCCTTCCCAG 58.756 47.826 0.00 0.00 0.00 4.45
2644 2891 4.311208 AGGTTCCTATAATCCCTTCCCA 57.689 45.455 0.00 0.00 0.00 4.37
2645 2892 5.413277 ACTAGGTTCCTATAATCCCTTCCC 58.587 45.833 0.00 0.00 0.00 3.97
2646 2893 6.324544 AGACTAGGTTCCTATAATCCCTTCC 58.675 44.000 0.00 0.00 0.00 3.46
2647 2894 7.859026 AAGACTAGGTTCCTATAATCCCTTC 57.141 40.000 0.00 0.00 0.00 3.46
2648 2895 7.733955 GGTAAGACTAGGTTCCTATAATCCCTT 59.266 40.741 0.00 0.00 0.00 3.95
2649 2896 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
2650 2897 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
2651 2898 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
2652 2899 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
2653 2900 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
2654 2901 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
2655 2902 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
2656 2903 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
2657 2904 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
2658 2905 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
2659 2906 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
2660 2907 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
2661 2908 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
2662 2909 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
2663 2910 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
2664 2911 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
2665 2912 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
2666 2913 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
2667 2914 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
2668 2915 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
2678 2925 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
2679 2926 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
2680 2927 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
2681 2928 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
2682 2929 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
2683 2930 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
2684 2931 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
2685 2932 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
2686 2933 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
2687 2934 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
2688 2935 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
2689 2936 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
2690 2937 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
2691 2938 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
2702 2949 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
2703 2950 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
2704 2951 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
2705 2952 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
2706 2953 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
2707 2954 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
2708 2955 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
2709 2956 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
2710 2957 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
2711 2958 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
2712 2959 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
2713 2960 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
2714 2961 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
2715 2962 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
2716 2963 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
2717 2964 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
2718 2965 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
2719 2966 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
2720 2967 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
2721 2968 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
2722 2969 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
2723 2970 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
2724 2971 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
2725 2972 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
2726 2973 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
2727 2974 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
2728 2975 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
2729 2976 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
2730 2977 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
2731 2978 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
2732 2979 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
2733 2980 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
2734 2981 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
2735 2982 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
2736 2983 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
2737 2984 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
2738 2985 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
2739 2986 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
2752 2999 2.362120 CTTTGAGGGCAGGCCTGG 60.362 66.667 33.46 15.81 36.10 4.45
2753 3000 1.676967 GACTTTGAGGGCAGGCCTG 60.677 63.158 29.34 29.34 36.10 4.85
2754 3001 2.134630 CTGACTTTGAGGGCAGGCCT 62.135 60.000 17.36 17.36 36.10 5.19
2755 3002 1.676967 CTGACTTTGAGGGCAGGCC 60.677 63.158 4.33 4.33 0.00 5.19
2756 3003 2.338785 GCTGACTTTGAGGGCAGGC 61.339 63.158 0.00 0.00 0.00 4.85
2757 3004 0.959372 CAGCTGACTTTGAGGGCAGG 60.959 60.000 8.42 0.00 0.00 4.85
2758 3005 0.250640 ACAGCTGACTTTGAGGGCAG 60.251 55.000 23.35 0.00 0.00 4.85
2759 3006 0.250467 GACAGCTGACTTTGAGGGCA 60.250 55.000 23.35 0.00 0.00 5.36
2760 3007 0.250467 TGACAGCTGACTTTGAGGGC 60.250 55.000 23.35 0.00 0.00 5.19
2761 3008 2.260844 TTGACAGCTGACTTTGAGGG 57.739 50.000 23.35 0.00 0.00 4.30
2762 3009 3.567164 ACAATTGACAGCTGACTTTGAGG 59.433 43.478 23.35 6.20 0.00 3.86
2763 3010 4.825546 ACAATTGACAGCTGACTTTGAG 57.174 40.909 23.35 6.93 0.00 3.02
2764 3011 5.822519 ACTTACAATTGACAGCTGACTTTGA 59.177 36.000 23.35 9.66 0.00 2.69
2765 3012 6.064846 ACTTACAATTGACAGCTGACTTTG 57.935 37.500 23.35 21.87 0.00 2.77
2766 3013 6.699575 AACTTACAATTGACAGCTGACTTT 57.300 33.333 23.35 9.74 0.00 2.66
2767 3014 7.217200 TCTAACTTACAATTGACAGCTGACTT 58.783 34.615 23.35 2.46 0.00 3.01
2768 3015 6.759272 TCTAACTTACAATTGACAGCTGACT 58.241 36.000 23.35 0.00 0.00 3.41
2769 3016 7.602517 ATCTAACTTACAATTGACAGCTGAC 57.397 36.000 23.35 15.92 0.00 3.51
2770 3017 9.890629 ATTATCTAACTTACAATTGACAGCTGA 57.109 29.630 23.35 0.00 0.00 4.26
2781 3028 9.237187 TGCCAATGTGAATTATCTAACTTACAA 57.763 29.630 0.00 0.00 0.00 2.41
2782 3029 8.800370 TGCCAATGTGAATTATCTAACTTACA 57.200 30.769 0.00 0.00 0.00 2.41
2839 3086 9.638239 GAAATACCACTGCAAAAATATCTTTCA 57.362 29.630 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.