Multiple sequence alignment - TraesCS2A01G336500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G336500 chr2A 100.000 4657 0 0 1 4657 570188543 570193199 0.000000e+00 8600
1 TraesCS2A01G336500 chr2D 93.848 1853 83 19 2098 3923 419785950 419784102 0.000000e+00 2761
2 TraesCS2A01G336500 chr2D 87.664 1524 105 27 466 1939 419787436 419785946 0.000000e+00 1696
3 TraesCS2A01G336500 chr2D 95.972 571 7 4 4102 4657 419783928 419783359 0.000000e+00 913
4 TraesCS2A01G336500 chr2D 86.179 369 20 7 127 465 419787843 419787476 2.050000e-98 370
5 TraesCS2A01G336500 chr2B 93.279 1830 102 15 2098 3923 492150752 492148940 0.000000e+00 2678
6 TraesCS2A01G336500 chr2B 89.317 1507 96 22 466 1939 492152222 492150748 0.000000e+00 1831
7 TraesCS2A01G336500 chr2B 95.949 469 7 4 4196 4656 492148480 492148016 0.000000e+00 750
8 TraesCS2A01G336500 chr2B 88.701 177 10 2 230 396 492152890 492152714 1.700000e-49 207
9 TraesCS2A01G336500 chr2B 95.238 105 5 0 126 230 492153021 492152917 2.880000e-37 167
10 TraesCS2A01G336500 chr3B 81.860 1720 217 59 2233 3916 21404149 21405809 0.000000e+00 1360
11 TraesCS2A01G336500 chr3B 75.556 405 61 16 1004 1394 21402835 21403215 1.040000e-36 165
12 TraesCS2A01G336500 chr3B 89.922 129 11 2 3 130 720876950 720876823 1.040000e-36 165
13 TraesCS2A01G336500 chr3A 83.357 1394 154 43 2285 3644 22230191 22228842 0.000000e+00 1218
14 TraesCS2A01G336500 chr3A 94.475 181 10 0 1929 2109 477708158 477708338 3.550000e-71 279
15 TraesCS2A01G336500 chr3A 88.421 95 7 1 1307 1397 22231267 22231173 1.370000e-20 111
16 TraesCS2A01G336500 chr3D 82.467 1443 178 39 2233 3644 14448095 14449493 0.000000e+00 1194
17 TraesCS2A01G336500 chr3D 94.857 175 9 0 1936 2110 556141143 556140969 1.650000e-69 274
18 TraesCS2A01G336500 chr3D 77.644 416 63 12 987 1394 14446792 14447185 4.690000e-55 226
19 TraesCS2A01G336500 chr7D 97.619 168 4 0 1937 2104 312574292 312574125 5.900000e-74 289
20 TraesCS2A01G336500 chr7D 97.024 168 5 0 1936 2103 56399641 56399808 2.740000e-72 283
21 TraesCS2A01G336500 chr7D 89.583 192 20 0 4422 4613 531553840 531554031 1.290000e-60 244
22 TraesCS2A01G336500 chr7D 92.742 124 7 2 3 125 591591056 591591178 1.330000e-40 178
23 TraesCS2A01G336500 chr7D 93.162 117 8 0 3 119 535855426 535855542 6.200000e-39 172
24 TraesCS2A01G336500 chr7D 91.129 124 9 2 3 124 637804262 637804385 2.880000e-37 167
25 TraesCS2A01G336500 chr7A 95.506 178 8 0 1934 2111 443397799 443397622 7.630000e-73 285
26 TraesCS2A01G336500 chr7A 84.400 250 31 7 4371 4613 611969535 611969783 6.020000e-59 239
27 TraesCS2A01G336500 chr7A 83.817 241 31 7 4367 4600 611776746 611776985 6.060000e-54 222
28 TraesCS2A01G336500 chr7A 91.736 121 9 1 4 123 727203434 727203314 2.880000e-37 167
29 TraesCS2A01G336500 chr1D 95.506 178 7 1 1928 2104 286391241 286391064 2.740000e-72 283
30 TraesCS2A01G336500 chr5D 95.954 173 7 0 1929 2101 42949732 42949560 9.870000e-72 281
31 TraesCS2A01G336500 chr5D 86.802 197 25 1 4417 4613 318059886 318060081 7.850000e-53 219
32 TraesCS2A01G336500 chr5B 94.444 180 10 0 1922 2101 38605750 38605929 1.280000e-70 278
33 TraesCS2A01G336500 chr5B 91.736 121 9 1 3 122 360427812 360427932 2.880000e-37 167
34 TraesCS2A01G336500 chr6A 91.710 193 15 1 1909 2101 328167395 328167586 2.760000e-67 267
35 TraesCS2A01G336500 chr5A 86.802 197 25 1 4417 4613 412913483 412913678 7.850000e-53 219
36 TraesCS2A01G336500 chr6D 92.742 124 8 1 1 123 377174536 377174659 1.330000e-40 178
37 TraesCS2A01G336500 chr4A 91.736 121 9 1 3 123 629118253 629118372 2.880000e-37 167
38 TraesCS2A01G336500 chr4B 91.057 123 10 1 3 124 662785577 662785699 1.040000e-36 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G336500 chr2A 570188543 570193199 4656 False 8600.0 8600 100.00000 1 4657 1 chr2A.!!$F1 4656
1 TraesCS2A01G336500 chr2D 419783359 419787843 4484 True 1435.0 2761 90.91575 127 4657 4 chr2D.!!$R1 4530
2 TraesCS2A01G336500 chr2B 492148016 492153021 5005 True 1126.6 2678 92.49680 126 4656 5 chr2B.!!$R1 4530
3 TraesCS2A01G336500 chr3B 21402835 21405809 2974 False 762.5 1360 78.70800 1004 3916 2 chr3B.!!$F1 2912
4 TraesCS2A01G336500 chr3A 22228842 22231267 2425 True 664.5 1218 85.88900 1307 3644 2 chr3A.!!$R1 2337
5 TraesCS2A01G336500 chr3D 14446792 14449493 2701 False 710.0 1194 80.05550 987 3644 2 chr3D.!!$F1 2657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 1133 0.097674 GAGACCATGTGCATGCGTTC 59.902 55.0 14.09 6.79 37.49 3.95 F
636 1135 0.452987 GACCATGTGCATGCGTTCAT 59.547 50.0 14.09 14.15 37.49 2.57 F
1911 2493 0.174617 AACCTTTGGCAACCAACGTG 59.825 50.0 0.00 0.00 43.82 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1616 2187 0.329596 ACTTGAGGGCAGTGGAATCC 59.670 55.000 0.0 0.0 0.0 3.01 R
1979 2561 1.206132 TGCCCCGTATGTAGTCACTTG 59.794 52.381 0.0 0.0 0.0 3.16 R
3857 5126 0.039437 GAGAAAGAGCACCACGACGA 60.039 55.000 0.0 0.0 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.464008 AGTGGATTCAGACACATTGTTGT 58.536 39.130 0.00 0.00 39.99 3.32
24 25 5.620206 AGTGGATTCAGACACATTGTTGTA 58.380 37.500 0.00 0.00 39.99 2.41
25 26 6.061441 AGTGGATTCAGACACATTGTTGTAA 58.939 36.000 0.00 0.00 39.99 2.41
26 27 6.716628 AGTGGATTCAGACACATTGTTGTAAT 59.283 34.615 0.00 0.00 39.99 1.89
27 28 7.882791 AGTGGATTCAGACACATTGTTGTAATA 59.117 33.333 0.00 0.00 39.99 0.98
28 29 7.962918 GTGGATTCAGACACATTGTTGTAATAC 59.037 37.037 0.00 0.00 37.54 1.89
29 30 7.882791 TGGATTCAGACACATTGTTGTAATACT 59.117 33.333 0.00 0.00 33.76 2.12
30 31 8.730680 GGATTCAGACACATTGTTGTAATACTT 58.269 33.333 0.00 0.00 33.76 2.24
64 65 9.052759 TCTTCGAGAATAATTAATAAAGTGGCC 57.947 33.333 0.00 0.00 0.00 5.36
65 66 7.416154 TCGAGAATAATTAATAAAGTGGCCG 57.584 36.000 0.00 0.00 0.00 6.13
66 67 6.987992 TCGAGAATAATTAATAAAGTGGCCGT 59.012 34.615 0.00 0.00 0.00 5.68
67 68 8.143193 TCGAGAATAATTAATAAAGTGGCCGTA 58.857 33.333 0.00 0.00 0.00 4.02
68 69 8.932791 CGAGAATAATTAATAAAGTGGCCGTAT 58.067 33.333 0.00 0.00 0.00 3.06
70 71 8.512138 AGAATAATTAATAAAGTGGCCGTATGC 58.488 33.333 0.00 0.00 40.16 3.14
71 72 7.753309 ATAATTAATAAAGTGGCCGTATGCA 57.247 32.000 0.00 0.00 43.89 3.96
72 73 6.648879 AATTAATAAAGTGGCCGTATGCAT 57.351 33.333 3.79 3.79 43.89 3.96
73 74 5.682943 TTAATAAAGTGGCCGTATGCATC 57.317 39.130 0.19 0.00 43.89 3.91
74 75 3.492102 ATAAAGTGGCCGTATGCATCT 57.508 42.857 0.19 0.00 43.89 2.90
75 76 4.617253 ATAAAGTGGCCGTATGCATCTA 57.383 40.909 0.19 0.00 43.89 1.98
76 77 2.240493 AAGTGGCCGTATGCATCTAC 57.760 50.000 0.19 0.00 43.89 2.59
77 78 0.393077 AGTGGCCGTATGCATCTACC 59.607 55.000 0.19 1.34 43.89 3.18
78 79 0.105964 GTGGCCGTATGCATCTACCA 59.894 55.000 0.19 4.37 43.89 3.25
79 80 0.392706 TGGCCGTATGCATCTACCAG 59.607 55.000 0.19 0.00 43.89 4.00
80 81 0.679505 GGCCGTATGCATCTACCAGA 59.320 55.000 0.19 0.00 43.89 3.86
81 82 1.276421 GGCCGTATGCATCTACCAGAT 59.724 52.381 0.19 0.00 43.89 2.90
82 83 2.496070 GGCCGTATGCATCTACCAGATA 59.504 50.000 0.19 0.00 43.89 1.98
83 84 3.512680 GCCGTATGCATCTACCAGATAC 58.487 50.000 0.19 0.00 40.77 2.24
84 85 3.056821 GCCGTATGCATCTACCAGATACA 60.057 47.826 0.19 0.00 40.77 2.29
85 86 4.738124 CCGTATGCATCTACCAGATACAG 58.262 47.826 0.19 0.00 32.00 2.74
86 87 4.459337 CCGTATGCATCTACCAGATACAGA 59.541 45.833 0.19 0.00 32.00 3.41
87 88 5.392487 CCGTATGCATCTACCAGATACAGAG 60.392 48.000 0.19 0.00 32.00 3.35
88 89 5.392487 CGTATGCATCTACCAGATACAGAGG 60.392 48.000 0.19 0.00 32.00 3.69
89 90 2.630098 TGCATCTACCAGATACAGAGGC 59.370 50.000 0.86 0.86 44.20 4.70
90 91 2.028567 GCATCTACCAGATACAGAGGCC 60.029 54.545 0.00 0.00 39.52 5.19
91 92 1.982660 TCTACCAGATACAGAGGCCG 58.017 55.000 0.00 0.00 0.00 6.13
92 93 0.962489 CTACCAGATACAGAGGCCGG 59.038 60.000 0.00 0.00 0.00 6.13
93 94 0.469331 TACCAGATACAGAGGCCGGG 60.469 60.000 2.18 0.00 0.00 5.73
94 95 2.511452 CCAGATACAGAGGCCGGGG 61.511 68.421 2.18 0.00 0.00 5.73
95 96 1.762460 CAGATACAGAGGCCGGGGT 60.762 63.158 2.18 0.00 0.00 4.95
96 97 1.457831 AGATACAGAGGCCGGGGTC 60.458 63.158 2.18 0.00 0.00 4.46
97 98 1.760875 GATACAGAGGCCGGGGTCA 60.761 63.158 2.18 0.00 0.00 4.02
98 99 1.074471 ATACAGAGGCCGGGGTCAT 60.074 57.895 2.18 0.00 0.00 3.06
99 100 1.122019 ATACAGAGGCCGGGGTCATC 61.122 60.000 2.18 0.00 0.00 2.92
100 101 3.866582 CAGAGGCCGGGGTCATCC 61.867 72.222 2.18 0.00 0.00 3.51
101 102 4.095400 AGAGGCCGGGGTCATCCT 62.095 66.667 2.18 0.00 35.33 3.24
102 103 3.090532 GAGGCCGGGGTCATCCTT 61.091 66.667 2.18 0.00 35.33 3.36
103 104 3.090532 AGGCCGGGGTCATCCTTC 61.091 66.667 2.18 0.00 35.33 3.46
104 105 3.090532 GGCCGGGGTCATCCTTCT 61.091 66.667 2.18 0.00 35.33 2.85
105 106 2.680370 GGCCGGGGTCATCCTTCTT 61.680 63.158 2.18 0.00 35.33 2.52
106 107 1.303282 GCCGGGGTCATCCTTCTTT 59.697 57.895 2.18 0.00 35.33 2.52
107 108 0.323451 GCCGGGGTCATCCTTCTTTT 60.323 55.000 2.18 0.00 35.33 2.27
108 109 1.751437 CCGGGGTCATCCTTCTTTTC 58.249 55.000 0.00 0.00 35.33 2.29
109 110 1.682087 CCGGGGTCATCCTTCTTTTCC 60.682 57.143 0.00 0.00 35.33 3.13
110 111 1.004277 CGGGGTCATCCTTCTTTTCCA 59.996 52.381 0.00 0.00 35.33 3.53
111 112 2.554344 CGGGGTCATCCTTCTTTTCCAA 60.554 50.000 0.00 0.00 35.33 3.53
112 113 3.506398 GGGGTCATCCTTCTTTTCCAAA 58.494 45.455 0.00 0.00 35.33 3.28
113 114 3.901222 GGGGTCATCCTTCTTTTCCAAAA 59.099 43.478 0.00 0.00 35.33 2.44
114 115 4.346709 GGGGTCATCCTTCTTTTCCAAAAA 59.653 41.667 0.00 0.00 35.33 1.94
272 300 3.270960 AGACAATCAGTAGAGGAGGGAGT 59.729 47.826 0.00 0.00 0.00 3.85
279 307 0.105453 TAGAGGAGGGAGTGATGCCC 60.105 60.000 0.00 0.00 46.40 5.36
338 379 0.806868 ACAGTGCTGCATTTGGATCG 59.193 50.000 5.27 0.00 0.00 3.69
387 428 0.802494 CCACACGAGTAACAATGCCC 59.198 55.000 0.00 0.00 0.00 5.36
424 871 2.286294 GCCTAGCATCTGATGTTCGTTG 59.714 50.000 18.19 4.36 0.00 4.10
445 892 4.827692 TGTGGTTCCTGTATACATGTGAC 58.172 43.478 9.11 7.19 0.00 3.67
459 906 1.008309 GTGACCGCCGCTAGAGATC 60.008 63.158 0.00 0.00 0.00 2.75
532 1025 2.530661 CACCTACCCACCCACCCA 60.531 66.667 0.00 0.00 0.00 4.51
584 1083 1.606601 CTCCACCCCGACTGAGACA 60.607 63.158 0.00 0.00 0.00 3.41
589 1088 2.989824 CCCGACTGAGACACCGGT 60.990 66.667 0.00 0.00 40.30 5.28
627 1126 0.108662 CTAGTGCGAGACCATGTGCA 60.109 55.000 0.00 0.00 34.44 4.57
628 1127 0.536724 TAGTGCGAGACCATGTGCAT 59.463 50.000 0.00 0.00 39.85 3.96
629 1128 1.022982 AGTGCGAGACCATGTGCATG 61.023 55.000 5.26 5.26 39.85 4.06
630 1129 2.400962 TGCGAGACCATGTGCATGC 61.401 57.895 11.82 11.82 37.49 4.06
631 1130 2.705220 CGAGACCATGTGCATGCG 59.295 61.111 14.09 0.00 37.49 4.73
632 1131 2.102438 CGAGACCATGTGCATGCGT 61.102 57.895 14.09 3.77 37.49 5.24
634 1133 0.097674 GAGACCATGTGCATGCGTTC 59.902 55.000 14.09 6.79 37.49 3.95
635 1134 0.606130 AGACCATGTGCATGCGTTCA 60.606 50.000 14.09 12.44 37.49 3.18
636 1135 0.452987 GACCATGTGCATGCGTTCAT 59.547 50.000 14.09 14.15 37.49 2.57
638 1137 1.273688 CCATGTGCATGCGTTCATTG 58.726 50.000 14.09 9.59 37.49 2.82
647 1153 5.459762 GTGCATGCGTTCATTGCTTTATTAT 59.540 36.000 14.09 0.00 32.07 1.28
679 1185 0.603707 CAGAAGCAACGCCTTCCTCA 60.604 55.000 7.26 0.00 41.65 3.86
706 1217 2.662596 CCGGGCACAAGTGAGCTA 59.337 61.111 4.04 0.00 0.00 3.32
737 1248 2.353607 CGGTCGTCGGCAGATAGC 60.354 66.667 0.00 0.00 44.65 2.97
772 1283 2.202837 GCACGGCGTTAGTAGGGG 60.203 66.667 11.19 0.00 0.00 4.79
788 1299 1.086067 GGGGCCGTAGAGTTTTACGC 61.086 60.000 0.00 0.00 43.73 4.42
811 1322 4.032900 CGCATAACTAAGCACGACTGAATT 59.967 41.667 0.00 0.00 0.00 2.17
899 1419 3.901844 TCCCTTCTATATAACCGCAAGCT 59.098 43.478 0.00 0.00 0.00 3.74
1135 1665 2.595009 GAATCCCTCCGTGTCCCTGC 62.595 65.000 0.00 0.00 0.00 4.85
1148 1678 2.029666 CCTGCTTCTATCCCGCCG 59.970 66.667 0.00 0.00 0.00 6.46
1218 1766 1.153349 GATCCTGAGAACGGTGGGC 60.153 63.158 0.00 0.00 0.00 5.36
1431 1983 1.557269 ATTCCGGCTGCTTCTGGTCT 61.557 55.000 0.00 0.00 34.12 3.85
1466 2018 2.311688 ATCTTTGCCGGCGTAGAGGG 62.312 60.000 27.46 12.83 0.00 4.30
1471 2023 3.528370 CCGGCGTAGAGGGGTCAG 61.528 72.222 6.01 0.00 0.00 3.51
1473 2025 1.452651 CGGCGTAGAGGGGTCAGTA 60.453 63.158 0.00 0.00 0.00 2.74
1474 2026 1.722636 CGGCGTAGAGGGGTCAGTAC 61.723 65.000 0.00 0.00 0.00 2.73
1490 2042 1.619827 AGTACGTGGGTTGATCCGAAA 59.380 47.619 0.00 0.00 37.00 3.46
1506 2061 5.917541 TCCGAAAGTTTCAGTGTTCATAC 57.082 39.130 15.67 0.00 0.00 2.39
1534 2090 9.328721 GTTTTTCTTCACATGTTTTCCTTTTTG 57.671 29.630 0.00 0.00 0.00 2.44
1535 2091 6.660887 TTCTTCACATGTTTTCCTTTTTGC 57.339 33.333 0.00 0.00 0.00 3.68
1561 2132 1.429463 GAAGTCGCATTCTCGGTTGT 58.571 50.000 0.00 0.00 0.00 3.32
1567 2138 1.512926 GCATTCTCGGTTGTGTCAGT 58.487 50.000 0.00 0.00 0.00 3.41
1568 2139 1.873591 GCATTCTCGGTTGTGTCAGTT 59.126 47.619 0.00 0.00 0.00 3.16
1571 2142 2.971660 TCTCGGTTGTGTCAGTTCAA 57.028 45.000 0.00 0.00 0.00 2.69
1572 2143 3.469008 TCTCGGTTGTGTCAGTTCAAT 57.531 42.857 0.00 0.00 0.00 2.57
1591 2162 7.706607 AGTTCAATTTTTCCAGTCAAAAGTAGC 59.293 33.333 0.00 0.00 0.00 3.58
1640 2211 2.116238 TCCACTGCCCTCAAGTATACC 58.884 52.381 0.00 0.00 0.00 2.73
1655 2226 6.014584 TCAAGTATACCATTCGTAGCATGGAT 60.015 38.462 6.99 0.23 43.70 3.41
1762 2334 9.869844 CACATTGTTCTTTTAGAAGTCTTACAG 57.130 33.333 0.00 0.00 34.42 2.74
1911 2493 0.174617 AACCTTTGGCAACCAACGTG 59.825 50.000 0.00 0.00 43.82 4.49
1946 2528 5.593679 TTTCATTAGAAGTACTCCCTCCG 57.406 43.478 0.00 0.00 34.71 4.63
1947 2529 4.246712 TCATTAGAAGTACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
1948 2530 4.607239 TCATTAGAAGTACTCCCTCCGTT 58.393 43.478 0.00 0.00 0.00 4.44
1949 2531 4.643784 TCATTAGAAGTACTCCCTCCGTTC 59.356 45.833 0.00 0.00 0.00 3.95
1950 2532 1.849977 AGAAGTACTCCCTCCGTTCC 58.150 55.000 0.00 0.00 0.00 3.62
1951 2533 1.358445 AGAAGTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 0.00 3.36
1952 2534 2.579860 AGAAGTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 0.00 2.94
1953 2535 3.011032 AGAAGTACTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 0.00 2.69
1954 2536 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1955 2537 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1956 2538 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1957 2539 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1958 2540 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
1959 2541 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
1960 2542 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1961 2543 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1962 2544 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1963 2545 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1964 2546 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1965 2547 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1966 2548 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1967 2549 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1983 2565 8.753497 AAGTCTTTTTAGAGATTCCAACAAGT 57.247 30.769 0.00 0.00 0.00 3.16
1984 2566 8.159344 AGTCTTTTTAGAGATTCCAACAAGTG 57.841 34.615 0.00 0.00 0.00 3.16
1985 2567 7.993183 AGTCTTTTTAGAGATTCCAACAAGTGA 59.007 33.333 0.00 0.00 0.00 3.41
1986 2568 8.070769 GTCTTTTTAGAGATTCCAACAAGTGAC 58.929 37.037 0.00 0.00 0.00 3.67
1987 2569 7.993183 TCTTTTTAGAGATTCCAACAAGTGACT 59.007 33.333 0.00 0.00 0.00 3.41
1988 2570 9.273016 CTTTTTAGAGATTCCAACAAGTGACTA 57.727 33.333 0.00 0.00 0.00 2.59
1989 2571 8.603242 TTTTAGAGATTCCAACAAGTGACTAC 57.397 34.615 0.00 0.00 0.00 2.73
1990 2572 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
1991 2573 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
1992 2574 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
1993 2575 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
1994 2576 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
1995 2577 4.182693 TCCAACAAGTGACTACATACGG 57.817 45.455 0.00 0.00 0.00 4.02
1996 2578 3.056393 TCCAACAAGTGACTACATACGGG 60.056 47.826 0.00 0.00 0.00 5.28
1997 2579 3.259064 CAACAAGTGACTACATACGGGG 58.741 50.000 0.00 0.00 0.00 5.73
1998 2580 1.206371 ACAAGTGACTACATACGGGGC 59.794 52.381 0.00 0.00 0.00 5.80
1999 2581 1.206132 CAAGTGACTACATACGGGGCA 59.794 52.381 0.00 0.00 0.00 5.36
2000 2582 1.563924 AGTGACTACATACGGGGCAA 58.436 50.000 0.00 0.00 0.00 4.52
2001 2583 1.903860 AGTGACTACATACGGGGCAAA 59.096 47.619 0.00 0.00 0.00 3.68
2002 2584 2.303600 AGTGACTACATACGGGGCAAAA 59.696 45.455 0.00 0.00 0.00 2.44
2003 2585 3.054655 AGTGACTACATACGGGGCAAAAT 60.055 43.478 0.00 0.00 0.00 1.82
2004 2586 3.064820 GTGACTACATACGGGGCAAAATG 59.935 47.826 0.00 0.00 0.00 2.32
2005 2587 3.055021 TGACTACATACGGGGCAAAATGA 60.055 43.478 0.00 0.00 0.00 2.57
2006 2588 3.541632 ACTACATACGGGGCAAAATGAG 58.458 45.455 0.00 0.00 0.00 2.90
2007 2589 2.507407 ACATACGGGGCAAAATGAGT 57.493 45.000 0.00 0.00 0.00 3.41
2008 2590 2.091541 ACATACGGGGCAAAATGAGTG 58.908 47.619 0.00 0.00 0.00 3.51
2009 2591 2.290641 ACATACGGGGCAAAATGAGTGA 60.291 45.455 0.00 0.00 0.00 3.41
2010 2592 2.570415 TACGGGGCAAAATGAGTGAA 57.430 45.000 0.00 0.00 0.00 3.18
2011 2593 1.923356 ACGGGGCAAAATGAGTGAAT 58.077 45.000 0.00 0.00 0.00 2.57
2012 2594 1.818674 ACGGGGCAAAATGAGTGAATC 59.181 47.619 0.00 0.00 0.00 2.52
2013 2595 2.094675 CGGGGCAAAATGAGTGAATCT 58.905 47.619 0.00 0.00 0.00 2.40
2014 2596 3.278574 CGGGGCAAAATGAGTGAATCTA 58.721 45.455 0.00 0.00 0.00 1.98
2015 2597 3.065371 CGGGGCAAAATGAGTGAATCTAC 59.935 47.826 0.00 0.00 0.00 2.59
2016 2598 4.016444 GGGGCAAAATGAGTGAATCTACA 58.984 43.478 0.00 0.00 0.00 2.74
2017 2599 4.142381 GGGGCAAAATGAGTGAATCTACAC 60.142 45.833 0.00 0.00 40.60 2.90
2031 2613 9.469097 AGTGAATCTACACTCTAAAGTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
2057 2639 7.905604 CATACATCCGTATGTTGTAATCCAT 57.094 36.000 0.00 0.00 46.70 3.41
2058 2640 8.322906 CATACATCCGTATGTTGTAATCCATT 57.677 34.615 0.00 0.00 46.70 3.16
2059 2641 8.783093 CATACATCCGTATGTTGTAATCCATTT 58.217 33.333 0.00 0.00 46.70 2.32
2060 2642 7.026631 ACATCCGTATGTTGTAATCCATTTG 57.973 36.000 0.00 0.00 44.07 2.32
2061 2643 6.826231 ACATCCGTATGTTGTAATCCATTTGA 59.174 34.615 0.00 0.00 44.07 2.69
2062 2644 7.338196 ACATCCGTATGTTGTAATCCATTTGAA 59.662 33.333 0.00 0.00 44.07 2.69
2063 2645 7.689446 TCCGTATGTTGTAATCCATTTGAAA 57.311 32.000 0.00 0.00 0.00 2.69
2064 2646 8.287439 TCCGTATGTTGTAATCCATTTGAAAT 57.713 30.769 0.00 0.00 0.00 2.17
2065 2647 8.187480 TCCGTATGTTGTAATCCATTTGAAATG 58.813 33.333 10.84 10.84 0.00 2.32
2066 2648 7.973388 CCGTATGTTGTAATCCATTTGAAATGT 59.027 33.333 15.93 1.43 0.00 2.71
2067 2649 9.009327 CGTATGTTGTAATCCATTTGAAATGTC 57.991 33.333 15.93 3.21 0.00 3.06
2095 2677 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2096 2678 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2097 2679 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2242 3437 2.079158 CGGTGTCTGTTTCAGATGCAT 58.921 47.619 0.00 0.00 42.73 3.96
2265 3460 7.223971 GCATGTACTTATGAGACGGTTAAATCA 59.776 37.037 0.00 0.00 0.00 2.57
2331 3526 4.016113 AGAAAACACGTCTTGCTGAAAC 57.984 40.909 0.00 0.00 0.00 2.78
2442 3637 5.828859 GGTATAGTTCTCTGAGCACCTCTTA 59.171 44.000 3.80 0.00 0.00 2.10
2561 3757 7.162761 TGAAACCACGAGGAATACTTATTTCA 58.837 34.615 5.68 5.96 38.69 2.69
2584 3780 1.909986 AGGGCCTGGTTAGTTTCTCTC 59.090 52.381 4.50 0.00 0.00 3.20
2957 4153 6.404074 GGGCTTGTCAAAGTATGATTTCTCAG 60.404 42.308 0.00 0.00 40.97 3.35
2994 4192 3.596214 TGGATTGTTCGGTTCTAGCTTC 58.404 45.455 0.00 0.00 0.00 3.86
2996 4194 2.074547 TTGTTCGGTTCTAGCTTCCG 57.925 50.000 11.80 11.80 44.76 4.30
2997 4195 0.389426 TGTTCGGTTCTAGCTTCCGC 60.389 55.000 12.77 4.09 43.35 5.54
3048 4254 6.625873 TGTAAACATTGAACTGCACACATA 57.374 33.333 0.00 0.00 0.00 2.29
3052 4258 4.487948 ACATTGAACTGCACACATATTGC 58.512 39.130 0.00 0.00 40.63 3.56
3061 4267 3.244146 TGCACACATATTGCCTTTGCTTT 60.244 39.130 0.00 0.00 39.39 3.51
3063 4269 4.928615 GCACACATATTGCCTTTGCTTTTA 59.071 37.500 0.00 0.00 38.71 1.52
3094 4311 4.527509 TGACTAGGAGTGCTTTTGAGAG 57.472 45.455 0.00 0.00 0.00 3.20
3099 4316 2.634940 AGGAGTGCTTTTGAGAGCTGTA 59.365 45.455 0.00 0.00 43.11 2.74
3100 4317 3.262915 AGGAGTGCTTTTGAGAGCTGTAT 59.737 43.478 0.00 0.00 43.11 2.29
3116 4335 7.331791 AGAGCTGTATTTTACCTGTTTAGAGG 58.668 38.462 0.00 0.00 39.28 3.69
3126 4345 3.056749 ACCTGTTTAGAGGACGCACTTAG 60.057 47.826 0.00 0.00 36.51 2.18
3213 4432 9.929180 TTCAGTTAGTATTGATGATAGTATGCC 57.071 33.333 0.00 0.00 0.00 4.40
3216 4435 9.314133 AGTTAGTATTGATGATAGTATGCCAGA 57.686 33.333 0.00 0.00 0.00 3.86
3269 4491 7.841915 AACCTTTATGTTTGTTTCCTTGTTG 57.158 32.000 0.00 0.00 0.00 3.33
3306 4529 6.209986 TGTCCAAATTGAGCTTCTGATTTGAT 59.790 34.615 18.52 0.00 40.26 2.57
3377 4604 2.622436 CTTGGTCATCGAGGAGGAAAC 58.378 52.381 0.00 0.00 0.00 2.78
3490 4723 6.379988 GGTATTTCTCAACCCCACACATTATT 59.620 38.462 0.00 0.00 0.00 1.40
3515 4748 4.177165 TGCTTAGGCACAATTTGACATG 57.823 40.909 2.79 0.00 44.28 3.21
3517 4750 4.463539 TGCTTAGGCACAATTTGACATGAT 59.536 37.500 0.00 0.00 44.28 2.45
3521 4767 3.698040 AGGCACAATTTGACATGATCCTC 59.302 43.478 0.00 0.00 34.40 3.71
3529 4776 7.281774 ACAATTTGACATGATCCTCACTGATAC 59.718 37.037 0.00 0.00 0.00 2.24
3548 4795 0.974383 CGGTGTAACTCTTCCAGGGT 59.026 55.000 0.00 0.00 36.74 4.34
3551 4798 2.105993 GGTGTAACTCTTCCAGGGTGTT 59.894 50.000 0.00 0.00 36.74 3.32
3592 4839 1.075601 ATCACCCCTGAAGGCAAGAA 58.924 50.000 0.00 0.00 0.00 2.52
3617 4864 5.282055 TCATCCTCAACTTTGCGAGATAT 57.718 39.130 0.00 0.00 0.00 1.63
3746 5012 3.599730 GCCTAAAAGCCAAGCAGATTT 57.400 42.857 0.00 0.00 0.00 2.17
3749 5015 4.440663 GCCTAAAAGCCAAGCAGATTTAGG 60.441 45.833 21.69 21.69 44.57 2.69
3755 5021 3.033909 GCCAAGCAGATTTAGGGGAAAT 58.966 45.455 0.00 0.00 40.62 2.17
3769 5036 8.743636 TTTAGGGGAAATGAATAAGGGAAAAA 57.256 30.769 0.00 0.00 0.00 1.94
3770 5037 6.874278 AGGGGAAATGAATAAGGGAAAAAG 57.126 37.500 0.00 0.00 0.00 2.27
3771 5038 6.570680 AGGGGAAATGAATAAGGGAAAAAGA 58.429 36.000 0.00 0.00 0.00 2.52
3772 5039 6.669591 AGGGGAAATGAATAAGGGAAAAAGAG 59.330 38.462 0.00 0.00 0.00 2.85
3773 5040 6.341316 GGGAAATGAATAAGGGAAAAAGAGC 58.659 40.000 0.00 0.00 0.00 4.09
3774 5041 6.155221 GGGAAATGAATAAGGGAAAAAGAGCT 59.845 38.462 0.00 0.00 0.00 4.09
3857 5126 7.447374 TGAACTTCATTCGGTCAATTATGTT 57.553 32.000 0.00 0.00 40.56 2.71
3898 5167 6.826231 TCTCAAATAATAAATCGGTGGAAGCA 59.174 34.615 0.00 0.00 0.00 3.91
3903 5172 1.168714 AAATCGGTGGAAGCAGAAGC 58.831 50.000 0.00 0.00 42.56 3.86
3947 5242 5.127845 TCAGACTTCAGAGTTCAGAGTGTTT 59.872 40.000 0.00 0.00 35.88 2.83
3953 5248 6.590234 TCAGAGTTCAGAGTGTTTGCTATA 57.410 37.500 0.00 0.00 0.00 1.31
3966 5261 7.390027 AGTGTTTGCTATATGTTCTCTGTTCT 58.610 34.615 0.00 0.00 0.00 3.01
3972 5267 6.818644 TGCTATATGTTCTCTGTTCTGGTTTC 59.181 38.462 0.00 0.00 0.00 2.78
3987 5282 2.175931 TGGTTTCTGCCTTTCCCAACTA 59.824 45.455 0.00 0.00 0.00 2.24
4085 5380 6.126594 TGAGAAAAGACTTTCCCAACTCCTAA 60.127 38.462 0.00 0.00 41.72 2.69
4090 5385 5.622180 AGACTTTCCCAACTCCTAACTTTC 58.378 41.667 0.00 0.00 0.00 2.62
4092 5387 5.622180 ACTTTCCCAACTCCTAACTTTCTC 58.378 41.667 0.00 0.00 0.00 2.87
4093 5388 4.635699 TTCCCAACTCCTAACTTTCTCC 57.364 45.455 0.00 0.00 0.00 3.71
4094 5389 3.593942 TCCCAACTCCTAACTTTCTCCA 58.406 45.455 0.00 0.00 0.00 3.86
4095 5390 3.583086 TCCCAACTCCTAACTTTCTCCAG 59.417 47.826 0.00 0.00 0.00 3.86
4097 5392 3.339141 CAACTCCTAACTTTCTCCAGGC 58.661 50.000 0.00 0.00 0.00 4.85
4098 5393 1.909986 ACTCCTAACTTTCTCCAGGCC 59.090 52.381 0.00 0.00 0.00 5.19
4099 5394 2.192263 CTCCTAACTTTCTCCAGGCCT 58.808 52.381 0.00 0.00 0.00 5.19
4100 5395 2.573915 CTCCTAACTTTCTCCAGGCCTT 59.426 50.000 0.00 0.00 0.00 4.35
4127 5452 0.759346 CTCGGCCCATTACTAAGCCT 59.241 55.000 0.00 0.00 43.48 4.58
4168 5493 1.002868 CAAGAGCCCAGACCACAGG 60.003 63.158 0.00 0.00 0.00 4.00
4317 5872 1.764571 CGTTCCCTTCCACCTGTCCA 61.765 60.000 0.00 0.00 0.00 4.02
4627 6197 1.492764 GGTAACTTCCGATCCCTCCA 58.507 55.000 0.00 0.00 0.00 3.86
4630 6200 1.196012 AACTTCCGATCCCTCCAGTC 58.804 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.620206 ACAACAATGTGTCTGAATCCACTA 58.380 37.500 0.00 0.00 38.69 2.74
1 2 4.464008 ACAACAATGTGTCTGAATCCACT 58.536 39.130 0.00 0.00 38.69 4.00
2 3 4.836125 ACAACAATGTGTCTGAATCCAC 57.164 40.909 0.00 0.00 38.69 4.02
3 4 7.882791 AGTATTACAACAATGTGTCTGAATCCA 59.117 33.333 0.00 0.00 40.84 3.41
4 5 8.268850 AGTATTACAACAATGTGTCTGAATCC 57.731 34.615 0.00 0.00 40.84 3.01
38 39 9.052759 GGCCACTTTATTAATTATTCTCGAAGA 57.947 33.333 0.00 0.00 0.00 2.87
39 40 8.009974 CGGCCACTTTATTAATTATTCTCGAAG 58.990 37.037 2.24 0.00 0.00 3.79
40 41 7.496591 ACGGCCACTTTATTAATTATTCTCGAA 59.503 33.333 2.24 0.00 0.00 3.71
41 42 6.987992 ACGGCCACTTTATTAATTATTCTCGA 59.012 34.615 2.24 0.00 0.00 4.04
42 43 7.186021 ACGGCCACTTTATTAATTATTCTCG 57.814 36.000 2.24 0.00 0.00 4.04
44 45 8.512138 GCATACGGCCACTTTATTAATTATTCT 58.488 33.333 2.24 0.00 36.11 2.40
45 46 8.293867 TGCATACGGCCACTTTATTAATTATTC 58.706 33.333 2.24 0.00 43.89 1.75
46 47 8.172352 TGCATACGGCCACTTTATTAATTATT 57.828 30.769 2.24 0.00 43.89 1.40
47 48 7.753309 TGCATACGGCCACTTTATTAATTAT 57.247 32.000 2.24 0.00 43.89 1.28
48 49 7.663905 AGATGCATACGGCCACTTTATTAATTA 59.336 33.333 2.24 0.00 43.89 1.40
49 50 6.490040 AGATGCATACGGCCACTTTATTAATT 59.510 34.615 2.24 0.00 43.89 1.40
50 51 6.003950 AGATGCATACGGCCACTTTATTAAT 58.996 36.000 2.24 0.00 43.89 1.40
51 52 5.373222 AGATGCATACGGCCACTTTATTAA 58.627 37.500 2.24 0.00 43.89 1.40
52 53 4.968259 AGATGCATACGGCCACTTTATTA 58.032 39.130 2.24 0.00 43.89 0.98
53 54 3.820557 AGATGCATACGGCCACTTTATT 58.179 40.909 2.24 0.00 43.89 1.40
54 55 3.492102 AGATGCATACGGCCACTTTAT 57.508 42.857 2.24 0.00 43.89 1.40
55 56 3.493699 GGTAGATGCATACGGCCACTTTA 60.494 47.826 2.24 0.00 43.89 1.85
56 57 2.561569 GTAGATGCATACGGCCACTTT 58.438 47.619 2.24 0.00 43.89 2.66
57 58 1.202651 GGTAGATGCATACGGCCACTT 60.203 52.381 2.24 0.00 43.89 3.16
58 59 0.393077 GGTAGATGCATACGGCCACT 59.607 55.000 2.24 0.00 43.89 4.00
59 60 0.105964 TGGTAGATGCATACGGCCAC 59.894 55.000 2.24 0.00 43.89 5.01
60 61 0.392706 CTGGTAGATGCATACGGCCA 59.607 55.000 2.24 5.41 43.89 5.36
61 62 0.679505 TCTGGTAGATGCATACGGCC 59.320 55.000 0.00 0.00 43.89 6.13
62 63 2.751166 ATCTGGTAGATGCATACGGC 57.249 50.000 0.00 0.00 45.13 5.68
63 64 4.459337 TCTGTATCTGGTAGATGCATACGG 59.541 45.833 0.00 0.00 44.33 4.02
64 65 5.392487 CCTCTGTATCTGGTAGATGCATACG 60.392 48.000 0.00 0.74 44.33 3.06
65 66 5.623368 GCCTCTGTATCTGGTAGATGCATAC 60.623 48.000 0.00 0.00 44.33 2.39
66 67 4.464244 GCCTCTGTATCTGGTAGATGCATA 59.536 45.833 0.00 3.29 44.33 3.14
67 68 3.260380 GCCTCTGTATCTGGTAGATGCAT 59.740 47.826 0.00 0.00 44.33 3.96
68 69 2.630098 GCCTCTGTATCTGGTAGATGCA 59.370 50.000 8.85 8.85 43.45 3.96
69 70 2.028567 GGCCTCTGTATCTGGTAGATGC 60.029 54.545 0.00 1.19 37.76 3.91
70 71 2.230025 CGGCCTCTGTATCTGGTAGATG 59.770 54.545 0.00 0.00 35.37 2.90
71 72 2.520069 CGGCCTCTGTATCTGGTAGAT 58.480 52.381 0.00 0.00 38.70 1.98
72 73 1.478837 CCGGCCTCTGTATCTGGTAGA 60.479 57.143 0.00 0.00 0.00 2.59
73 74 0.962489 CCGGCCTCTGTATCTGGTAG 59.038 60.000 0.00 0.00 0.00 3.18
74 75 0.469331 CCCGGCCTCTGTATCTGGTA 60.469 60.000 0.00 0.00 0.00 3.25
75 76 1.762460 CCCGGCCTCTGTATCTGGT 60.762 63.158 0.00 0.00 0.00 4.00
76 77 2.511452 CCCCGGCCTCTGTATCTGG 61.511 68.421 0.00 0.00 0.00 3.86
77 78 1.749334 GACCCCGGCCTCTGTATCTG 61.749 65.000 0.00 0.00 0.00 2.90
78 79 1.457831 GACCCCGGCCTCTGTATCT 60.458 63.158 0.00 0.00 0.00 1.98
79 80 1.122019 ATGACCCCGGCCTCTGTATC 61.122 60.000 0.00 0.00 0.00 2.24
80 81 1.074471 ATGACCCCGGCCTCTGTAT 60.074 57.895 0.00 0.00 0.00 2.29
81 82 1.760875 GATGACCCCGGCCTCTGTA 60.761 63.158 0.00 0.00 0.00 2.74
82 83 3.083997 GATGACCCCGGCCTCTGT 61.084 66.667 0.00 0.00 0.00 3.41
83 84 3.866582 GGATGACCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
84 85 3.642741 AAGGATGACCCCGGCCTCT 62.643 63.158 0.00 0.00 36.73 3.69
85 86 3.090532 AAGGATGACCCCGGCCTC 61.091 66.667 0.00 0.00 36.73 4.70
86 87 3.090532 GAAGGATGACCCCGGCCT 61.091 66.667 0.00 0.00 36.73 5.19
87 88 2.211468 AAAGAAGGATGACCCCGGCC 62.211 60.000 0.00 0.00 36.73 6.13
88 89 0.323451 AAAAGAAGGATGACCCCGGC 60.323 55.000 0.00 0.00 36.73 6.13
89 90 1.682087 GGAAAAGAAGGATGACCCCGG 60.682 57.143 0.00 0.00 36.73 5.73
90 91 1.004277 TGGAAAAGAAGGATGACCCCG 59.996 52.381 0.00 0.00 36.73 5.73
91 92 2.899303 TGGAAAAGAAGGATGACCCC 57.101 50.000 0.00 0.00 36.73 4.95
92 93 5.545063 TTTTTGGAAAAGAAGGATGACCC 57.455 39.130 0.00 0.00 36.73 4.46
119 120 9.367701 CGTCTACGTCGCATCAGTATGATTTTC 62.368 44.444 0.00 0.00 43.74 2.29
120 121 7.697528 CGTCTACGTCGCATCAGTATGATTTT 61.698 42.308 0.00 0.00 43.74 1.82
121 122 6.287289 CGTCTACGTCGCATCAGTATGATTT 61.287 44.000 0.00 0.00 43.74 2.17
122 123 4.844174 CGTCTACGTCGCATCAGTATGATT 60.844 45.833 0.00 0.00 43.74 2.57
123 124 3.364068 CGTCTACGTCGCATCAGTATGAT 60.364 47.826 0.00 0.00 45.75 2.45
124 125 2.033151 CGTCTACGTCGCATCAGTATGA 60.033 50.000 0.00 0.00 41.92 2.15
167 168 0.386113 GGGGAATCTCTCGAACTCGG 59.614 60.000 0.00 0.00 40.29 4.63
279 307 2.799371 GGAGCTACGACCGAGTGG 59.201 66.667 0.00 0.00 42.84 4.00
285 313 1.789078 TTATCGCCGGAGCTACGACC 61.789 60.000 22.92 9.55 38.85 4.79
286 314 0.240411 ATTATCGCCGGAGCTACGAC 59.760 55.000 22.92 7.45 38.85 4.34
318 359 2.009051 CGATCCAAATGCAGCACTGTA 58.991 47.619 0.00 0.00 0.00 2.74
338 379 2.094130 AGCCTAGGAGAAAACTACACGC 60.094 50.000 14.75 0.00 0.00 5.34
424 871 4.189231 GGTCACATGTATACAGGAACCAC 58.811 47.826 26.80 16.73 37.16 4.16
445 892 1.154131 CATCGATCTCTAGCGGCGG 60.154 63.158 9.78 0.00 34.61 6.13
459 906 8.186163 TGGAATTCAGAATTTTCAGAATCATCG 58.814 33.333 9.84 0.00 40.91 3.84
577 1075 4.794164 CGATCACCGGTGTCTCAG 57.206 61.111 32.74 20.39 33.91 3.35
589 1088 2.048597 AAACGTCGCTGCCGATCA 60.049 55.556 5.34 0.00 46.38 2.92
627 1126 6.850823 CGTGTATAATAAAGCAATGAACGCAT 59.149 34.615 0.00 0.00 35.92 4.73
628 1127 6.188871 CGTGTATAATAAAGCAATGAACGCA 58.811 36.000 0.00 0.00 0.00 5.24
629 1128 5.619607 CCGTGTATAATAAAGCAATGAACGC 59.380 40.000 0.00 0.00 0.00 4.84
630 1129 6.939627 TCCGTGTATAATAAAGCAATGAACG 58.060 36.000 0.00 0.00 0.00 3.95
631 1130 9.006215 GTTTCCGTGTATAATAAAGCAATGAAC 57.994 33.333 0.00 0.00 0.00 3.18
632 1131 7.906010 CGTTTCCGTGTATAATAAAGCAATGAA 59.094 33.333 0.00 0.00 0.00 2.57
634 1133 6.631238 CCGTTTCCGTGTATAATAAAGCAATG 59.369 38.462 0.00 0.00 0.00 2.82
635 1134 6.721321 CCGTTTCCGTGTATAATAAAGCAAT 58.279 36.000 0.00 0.00 0.00 3.56
636 1135 5.447548 GCCGTTTCCGTGTATAATAAAGCAA 60.448 40.000 0.00 0.00 0.00 3.91
638 1137 4.034279 TGCCGTTTCCGTGTATAATAAAGC 59.966 41.667 0.00 0.00 0.00 3.51
647 1153 0.947180 GCTTCTGCCGTTTCCGTGTA 60.947 55.000 0.00 0.00 0.00 2.90
697 1208 1.269998 GACGTGGTCAGTAGCTCACTT 59.730 52.381 0.00 0.00 34.26 3.16
772 1283 1.342810 GCGCGTAAAACTCTACGGC 59.657 57.895 8.43 3.80 43.85 5.68
788 1299 2.526077 TCAGTCGTGCTTAGTTATGCG 58.474 47.619 0.00 0.00 0.00 4.73
811 1322 3.120338 CGCGCAGTAAGAAATGGAAAGAA 60.120 43.478 8.75 0.00 0.00 2.52
1135 1665 2.240493 ATGAAACGGCGGGATAGAAG 57.760 50.000 13.24 0.00 0.00 2.85
1148 1678 3.629858 GGCAGATCCGCAATGAAAC 57.370 52.632 2.82 0.00 0.00 2.78
1431 1983 4.576053 GCAAAGATATGGCATACACAGACA 59.424 41.667 9.83 0.00 0.00 3.41
1466 2018 1.405121 GGATCAACCCACGTACTGACC 60.405 57.143 0.00 0.00 0.00 4.02
1471 2023 1.997606 CTTTCGGATCAACCCACGTAC 59.002 52.381 0.00 0.00 34.64 3.67
1473 2025 0.395312 ACTTTCGGATCAACCCACGT 59.605 50.000 0.00 0.00 34.64 4.49
1474 2026 1.519408 AACTTTCGGATCAACCCACG 58.481 50.000 0.00 0.00 34.64 4.94
1490 2042 8.281212 AGAAAAACTGTATGAACACTGAAACT 57.719 30.769 0.00 0.00 0.00 2.66
1506 2061 7.832503 AAGGAAAACATGTGAAGAAAAACTG 57.167 32.000 0.00 0.00 0.00 3.16
1561 2132 6.522625 TTGACTGGAAAAATTGAACTGACA 57.477 33.333 0.00 0.00 0.00 3.58
1567 2138 7.781056 AGCTACTTTTGACTGGAAAAATTGAA 58.219 30.769 0.00 0.00 0.00 2.69
1568 2139 7.346751 AGCTACTTTTGACTGGAAAAATTGA 57.653 32.000 0.00 0.00 0.00 2.57
1571 2142 7.710907 GGAAAAGCTACTTTTGACTGGAAAAAT 59.289 33.333 9.88 0.00 42.72 1.82
1572 2143 7.039270 GGAAAAGCTACTTTTGACTGGAAAAA 58.961 34.615 9.88 0.00 42.72 1.94
1607 2178 2.291217 GGCAGTGGAATCCTTTTCTCCT 60.291 50.000 0.00 0.00 0.00 3.69
1616 2187 0.329596 ACTTGAGGGCAGTGGAATCC 59.670 55.000 0.00 0.00 0.00 3.01
1640 2211 4.621068 ACAACAATCCATGCTACGAATG 57.379 40.909 0.00 0.00 0.00 2.67
1762 2334 9.630098 TGCTTCTCAAATGAAGAAATACATTTC 57.370 29.630 8.25 6.58 44.40 2.17
1775 2347 6.617879 CAGATTCATGTTGCTTCTCAAATGA 58.382 36.000 0.00 0.00 36.26 2.57
1895 2476 1.591327 GCCACGTTGGTTGCCAAAG 60.591 57.895 11.25 11.25 45.73 2.77
1935 2517 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
1936 2518 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1937 2519 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1938 2520 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1939 2521 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1940 2522 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1941 2523 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1957 2539 9.847224 ACTTGTTGGAATCTCTAAAAAGACTTA 57.153 29.630 9.03 0.00 35.06 2.24
1958 2540 8.624776 CACTTGTTGGAATCTCTAAAAAGACTT 58.375 33.333 9.03 0.00 35.06 3.01
1959 2541 7.993183 TCACTTGTTGGAATCTCTAAAAAGACT 59.007 33.333 9.03 0.00 35.06 3.24
1960 2542 8.070769 GTCACTTGTTGGAATCTCTAAAAAGAC 58.929 37.037 9.03 0.00 35.06 3.01
1961 2543 7.993183 AGTCACTTGTTGGAATCTCTAAAAAGA 59.007 33.333 9.03 0.00 35.06 2.52
1962 2544 8.159344 AGTCACTTGTTGGAATCTCTAAAAAG 57.841 34.615 2.17 2.17 37.94 2.27
1963 2545 9.052759 GTAGTCACTTGTTGGAATCTCTAAAAA 57.947 33.333 0.00 0.00 0.00 1.94
1964 2546 8.208224 TGTAGTCACTTGTTGGAATCTCTAAAA 58.792 33.333 0.00 0.00 0.00 1.52
1965 2547 7.732025 TGTAGTCACTTGTTGGAATCTCTAAA 58.268 34.615 0.00 0.00 0.00 1.85
1966 2548 7.297936 TGTAGTCACTTGTTGGAATCTCTAA 57.702 36.000 0.00 0.00 0.00 2.10
1967 2549 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
1968 2550 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
1969 2551 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
1970 2552 6.100004 CGTATGTAGTCACTTGTTGGAATCT 58.900 40.000 0.00 0.00 0.00 2.40
1971 2553 5.291128 CCGTATGTAGTCACTTGTTGGAATC 59.709 44.000 0.00 0.00 0.00 2.52
1972 2554 5.175859 CCGTATGTAGTCACTTGTTGGAAT 58.824 41.667 0.00 0.00 0.00 3.01
1973 2555 4.561938 CCCGTATGTAGTCACTTGTTGGAA 60.562 45.833 0.00 0.00 0.00 3.53
1974 2556 3.056393 CCCGTATGTAGTCACTTGTTGGA 60.056 47.826 0.00 0.00 0.00 3.53
1975 2557 3.259064 CCCGTATGTAGTCACTTGTTGG 58.741 50.000 0.00 0.00 0.00 3.77
1976 2558 3.259064 CCCCGTATGTAGTCACTTGTTG 58.741 50.000 0.00 0.00 0.00 3.33
1977 2559 2.354403 GCCCCGTATGTAGTCACTTGTT 60.354 50.000 0.00 0.00 0.00 2.83
1978 2560 1.206371 GCCCCGTATGTAGTCACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
1979 2561 1.206132 TGCCCCGTATGTAGTCACTTG 59.794 52.381 0.00 0.00 0.00 3.16
1980 2562 1.563924 TGCCCCGTATGTAGTCACTT 58.436 50.000 0.00 0.00 0.00 3.16
1981 2563 1.563924 TTGCCCCGTATGTAGTCACT 58.436 50.000 0.00 0.00 0.00 3.41
1982 2564 2.389962 TTTGCCCCGTATGTAGTCAC 57.610 50.000 0.00 0.00 0.00 3.67
1983 2565 3.055021 TCATTTTGCCCCGTATGTAGTCA 60.055 43.478 0.00 0.00 0.00 3.41
1984 2566 3.537580 TCATTTTGCCCCGTATGTAGTC 58.462 45.455 0.00 0.00 0.00 2.59
1985 2567 3.054655 ACTCATTTTGCCCCGTATGTAGT 60.055 43.478 0.00 0.00 0.00 2.73
1986 2568 3.312421 CACTCATTTTGCCCCGTATGTAG 59.688 47.826 0.00 0.00 0.00 2.74
1987 2569 3.055021 TCACTCATTTTGCCCCGTATGTA 60.055 43.478 0.00 0.00 0.00 2.29
1988 2570 2.091541 CACTCATTTTGCCCCGTATGT 58.908 47.619 0.00 0.00 0.00 2.29
1989 2571 2.364632 TCACTCATTTTGCCCCGTATG 58.635 47.619 0.00 0.00 0.00 2.39
1990 2572 2.799126 TCACTCATTTTGCCCCGTAT 57.201 45.000 0.00 0.00 0.00 3.06
1991 2573 2.570415 TTCACTCATTTTGCCCCGTA 57.430 45.000 0.00 0.00 0.00 4.02
1992 2574 1.818674 GATTCACTCATTTTGCCCCGT 59.181 47.619 0.00 0.00 0.00 5.28
1993 2575 2.094675 AGATTCACTCATTTTGCCCCG 58.905 47.619 0.00 0.00 0.00 5.73
1994 2576 4.016444 TGTAGATTCACTCATTTTGCCCC 58.984 43.478 0.00 0.00 0.00 5.80
1995 2577 4.702131 AGTGTAGATTCACTCATTTTGCCC 59.298 41.667 0.00 0.00 44.07 5.36
1996 2578 5.886960 AGTGTAGATTCACTCATTTTGCC 57.113 39.130 0.00 0.00 44.07 4.52
2034 2616 8.783093 CAAATGGATTACAACATACGGATGTAT 58.217 33.333 15.10 8.21 45.93 2.29
2035 2617 7.988028 TCAAATGGATTACAACATACGGATGTA 59.012 33.333 15.10 0.00 45.93 2.29
2037 2619 7.258022 TCAAATGGATTACAACATACGGATG 57.742 36.000 5.94 5.94 39.16 3.51
2038 2620 7.873719 TTCAAATGGATTACAACATACGGAT 57.126 32.000 0.00 0.00 0.00 4.18
2039 2621 7.689446 TTTCAAATGGATTACAACATACGGA 57.311 32.000 0.00 0.00 0.00 4.69
2040 2622 7.973388 ACATTTCAAATGGATTACAACATACGG 59.027 33.333 14.70 0.00 0.00 4.02
2041 2623 8.909708 ACATTTCAAATGGATTACAACATACG 57.090 30.769 14.70 0.00 0.00 3.06
2069 2651 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2070 2652 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2071 2653 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2072 2654 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2073 2655 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2074 2656 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2075 2657 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2076 2658 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2077 2659 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2078 2660 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2079 2661 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2080 2662 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2081 2663 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2082 2664 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2083 2665 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2084 2666 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
2085 2667 1.900486 CTTTGTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
2086 2668 1.622312 ACTTTGTACTCCCTCCGTTCC 59.378 52.381 0.00 0.00 0.00 3.62
2087 2669 3.064931 CAACTTTGTACTCCCTCCGTTC 58.935 50.000 0.00 0.00 0.00 3.95
2088 2670 2.224450 CCAACTTTGTACTCCCTCCGTT 60.224 50.000 0.00 0.00 0.00 4.44
2089 2671 1.346722 CCAACTTTGTACTCCCTCCGT 59.653 52.381 0.00 0.00 0.00 4.69
2090 2672 1.621814 TCCAACTTTGTACTCCCTCCG 59.378 52.381 0.00 0.00 0.00 4.63
2091 2673 3.370633 GGATCCAACTTTGTACTCCCTCC 60.371 52.174 6.95 0.00 0.00 4.30
2092 2674 3.519913 AGGATCCAACTTTGTACTCCCTC 59.480 47.826 15.82 0.00 0.00 4.30
2093 2675 3.519913 GAGGATCCAACTTTGTACTCCCT 59.480 47.826 15.82 0.00 0.00 4.20
2094 2676 3.519913 AGAGGATCCAACTTTGTACTCCC 59.480 47.826 15.82 0.00 33.66 4.30
2095 2677 4.223032 TCAGAGGATCCAACTTTGTACTCC 59.777 45.833 15.82 0.00 33.66 3.85
2096 2678 5.407407 TCAGAGGATCCAACTTTGTACTC 57.593 43.478 15.82 0.00 33.66 2.59
2097 2679 5.825593 TTCAGAGGATCCAACTTTGTACT 57.174 39.130 15.82 0.00 33.66 2.73
2166 2751 4.934797 TGGATCTTTCAGACAAGGGATT 57.065 40.909 0.00 0.00 0.00 3.01
2169 2754 5.990120 AATTTGGATCTTTCAGACAAGGG 57.010 39.130 0.00 0.00 0.00 3.95
2196 2781 6.329496 ACGTAACCAAATAATGCATTCTTGG 58.671 36.000 32.31 32.31 38.17 3.61
2242 3437 9.661563 AATTGATTTAACCGTCTCATAAGTACA 57.338 29.630 0.00 0.00 0.00 2.90
2271 3466 6.631238 CACGTCATATTAAAATAAAGGTGCGG 59.369 38.462 0.00 0.00 0.00 5.69
2331 3526 5.237996 CCCATATACTGCATCAAACACTCAG 59.762 44.000 0.00 0.00 0.00 3.35
2584 3780 6.202954 ACTTTAAACTGTTCTGAGATTCGGTG 59.797 38.462 0.00 0.00 0.00 4.94
2957 4153 6.220726 ACAATCCATGGTTTACTTAATGGC 57.779 37.500 12.58 0.00 39.58 4.40
2994 4192 2.096980 TCAGTCGACTGTTATGTAGCGG 59.903 50.000 37.21 14.01 44.12 5.52
2996 4194 3.852536 GTGTCAGTCGACTGTTATGTAGC 59.147 47.826 37.21 20.58 44.12 3.58
2997 4195 5.089411 CAGTGTCAGTCGACTGTTATGTAG 58.911 45.833 37.21 21.42 44.12 2.74
3061 4267 9.905713 AAGCACTCCTAGTCATCATAAAAATAA 57.094 29.630 0.00 0.00 0.00 1.40
3063 4269 8.814038 AAAGCACTCCTAGTCATCATAAAAAT 57.186 30.769 0.00 0.00 0.00 1.82
3074 4282 3.056179 AGCTCTCAAAAGCACTCCTAGTC 60.056 47.826 0.00 0.00 45.00 2.59
3094 4311 6.035758 CGTCCTCTAAACAGGTAAAATACAGC 59.964 42.308 0.00 0.00 34.76 4.40
3099 4316 4.694037 GTGCGTCCTCTAAACAGGTAAAAT 59.306 41.667 0.00 0.00 34.76 1.82
3100 4317 4.060205 GTGCGTCCTCTAAACAGGTAAAA 58.940 43.478 0.00 0.00 34.76 1.52
3116 4335 3.128349 TCAAGACAAACCTAAGTGCGTC 58.872 45.455 0.00 0.00 0.00 5.19
3126 4345 8.696410 TGTTACAAAATTTCTCAAGACAAACC 57.304 30.769 0.00 0.00 0.00 3.27
3240 4462 7.189079 AGGAAACAAACATAAAGGTTTTCCA 57.811 32.000 11.65 0.00 43.73 3.53
3248 4470 8.190784 AGACTCAACAAGGAAACAAACATAAAG 58.809 33.333 0.00 0.00 0.00 1.85
3249 4471 7.973388 CAGACTCAACAAGGAAACAAACATAAA 59.027 33.333 0.00 0.00 0.00 1.40
3252 4474 5.163519 CCAGACTCAACAAGGAAACAAACAT 60.164 40.000 0.00 0.00 0.00 2.71
3269 4491 1.967319 TTTGGACAAGTGCCAGACTC 58.033 50.000 0.00 0.00 36.64 3.36
3377 4604 1.079127 AGTTCATCGTGCGGGAAGG 60.079 57.895 0.00 0.00 0.00 3.46
3384 4611 1.461127 GTGACTTCCAGTTCATCGTGC 59.539 52.381 0.00 0.00 0.00 5.34
3515 4748 4.338682 AGTTACACCGTATCAGTGAGGATC 59.661 45.833 4.00 0.00 38.63 3.36
3517 4750 3.693085 GAGTTACACCGTATCAGTGAGGA 59.307 47.826 4.00 0.00 38.63 3.71
3521 4767 4.082408 TGGAAGAGTTACACCGTATCAGTG 60.082 45.833 0.00 0.00 41.15 3.66
3529 4776 0.974383 ACCCTGGAAGAGTTACACCG 59.026 55.000 0.00 0.00 34.07 4.94
3548 4795 1.694150 CTCTCTGGGTGGAACTGAACA 59.306 52.381 0.00 0.00 36.74 3.18
3551 4798 0.471780 TGCTCTCTGGGTGGAACTGA 60.472 55.000 0.00 0.00 36.74 3.41
3592 4839 4.326826 TCTCGCAAAGTTGAGGATGATTT 58.673 39.130 0.00 0.00 33.00 2.17
3617 4864 1.686587 TGCTTCTCAAACTCCTCGACA 59.313 47.619 0.00 0.00 0.00 4.35
3746 5012 7.714500 TCTTTTTCCCTTATTCATTTCCCCTA 58.286 34.615 0.00 0.00 0.00 3.53
3749 5015 6.155221 AGCTCTTTTTCCCTTATTCATTTCCC 59.845 38.462 0.00 0.00 0.00 3.97
3769 5036 2.165030 CGAATGGCAATGGAAAAGCTCT 59.835 45.455 0.00 0.00 0.00 4.09
3770 5037 2.094545 ACGAATGGCAATGGAAAAGCTC 60.095 45.455 0.00 0.00 0.00 4.09
3771 5038 1.895131 ACGAATGGCAATGGAAAAGCT 59.105 42.857 0.00 0.00 0.00 3.74
3772 5039 2.368655 ACGAATGGCAATGGAAAAGC 57.631 45.000 0.00 0.00 0.00 3.51
3773 5040 3.432933 CCAAACGAATGGCAATGGAAAAG 59.567 43.478 0.00 0.00 32.78 2.27
3774 5041 3.181461 ACCAAACGAATGGCAATGGAAAA 60.181 39.130 10.48 0.00 44.75 2.29
3780 5047 3.959535 ATGAACCAAACGAATGGCAAT 57.040 38.095 10.48 0.00 44.75 3.56
3822 5091 5.278808 CCGAATGAAGTTCATACGGGATCTA 60.279 44.000 18.56 0.00 35.76 1.98
3857 5126 0.039437 GAGAAAGAGCACCACGACGA 60.039 55.000 0.00 0.00 0.00 4.20
3919 5188 6.016693 CACTCTGAACTCTGAAGTCTGAAGTA 60.017 42.308 0.00 0.00 33.48 2.24
3920 5189 4.892934 ACTCTGAACTCTGAAGTCTGAAGT 59.107 41.667 0.00 0.00 33.48 3.01
3947 5242 5.939764 ACCAGAACAGAGAACATATAGCA 57.060 39.130 0.00 0.00 0.00 3.49
3953 5248 3.817647 GCAGAAACCAGAACAGAGAACAT 59.182 43.478 0.00 0.00 0.00 2.71
3966 5261 1.063266 AGTTGGGAAAGGCAGAAACCA 60.063 47.619 0.00 0.00 0.00 3.67
4048 5343 8.655651 AAAGTCTTTTCTCAACACAACAAAAA 57.344 26.923 0.00 0.00 0.00 1.94
4049 5344 7.383843 GGAAAGTCTTTTCTCAACACAACAAAA 59.616 33.333 0.00 0.00 41.92 2.44
4050 5345 6.866248 GGAAAGTCTTTTCTCAACACAACAAA 59.134 34.615 0.00 0.00 41.92 2.83
4051 5346 6.386654 GGAAAGTCTTTTCTCAACACAACAA 58.613 36.000 0.00 0.00 41.92 2.83
4052 5347 5.105917 GGGAAAGTCTTTTCTCAACACAACA 60.106 40.000 3.58 0.00 42.31 3.33
4053 5348 5.340803 GGGAAAGTCTTTTCTCAACACAAC 58.659 41.667 3.58 0.00 42.31 3.32
4054 5349 5.576447 GGGAAAGTCTTTTCTCAACACAA 57.424 39.130 3.58 0.00 42.31 3.33
4068 5363 5.622180 AGAAAGTTAGGAGTTGGGAAAGTC 58.378 41.667 0.00 0.00 0.00 3.01
4069 5364 5.456330 GGAGAAAGTTAGGAGTTGGGAAAGT 60.456 44.000 0.00 0.00 0.00 2.66
4085 5380 1.349357 GTCAGAAGGCCTGGAGAAAGT 59.651 52.381 5.69 0.00 43.12 2.66
4090 5385 1.078567 GCTGTCAGAAGGCCTGGAG 60.079 63.158 5.69 0.00 43.12 3.86
4092 5387 1.078567 GAGCTGTCAGAAGGCCTGG 60.079 63.158 5.69 0.00 43.12 4.45
4093 5388 1.447489 CGAGCTGTCAGAAGGCCTG 60.447 63.158 5.69 0.00 44.27 4.85
4094 5389 2.654079 CCGAGCTGTCAGAAGGCCT 61.654 63.158 0.00 0.00 0.00 5.19
4095 5390 2.125350 CCGAGCTGTCAGAAGGCC 60.125 66.667 3.32 0.00 0.00 5.19
4097 5392 2.125350 GGCCGAGCTGTCAGAAGG 60.125 66.667 3.32 4.24 0.00 3.46
4098 5393 2.125350 GGGCCGAGCTGTCAGAAG 60.125 66.667 3.32 0.00 0.00 2.85
4099 5394 1.841302 AATGGGCCGAGCTGTCAGAA 61.841 55.000 3.32 0.00 0.00 3.02
4100 5395 0.975556 TAATGGGCCGAGCTGTCAGA 60.976 55.000 3.32 0.00 0.00 3.27
4127 5452 1.040646 CTACTGGGCCTTCGCTCATA 58.959 55.000 4.53 0.00 46.97 2.15
4317 5872 2.995872 GCCGACAAGCGAGAGAGGT 61.996 63.158 0.00 0.00 44.57 3.85
4627 6197 5.085107 TTGAGAAGCAAAGCAGAGGGACT 62.085 47.826 0.00 0.00 35.25 3.85
4630 6200 1.901591 TTGAGAAGCAAAGCAGAGGG 58.098 50.000 0.00 0.00 32.46 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.