AutoCloner

Multiple sequence alignment - TraesCS2A01G336300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G336300	chr2A	100.000	2543	0	0	884	3426	570149939	570152481	0.000000e+00	4697.0
1	TraesCS2A01G336300	chr2A	100.000	668	0	0	1	668	570149056	570149723	0.000000e+00	1234.0
2	TraesCS2A01G336300	chr2A	83.099	71	10	2	3284	3354	724026175	724026107	2.850000e-06	63.9
3	TraesCS2A01G336300	chr2D	94.712	2572	68	24	884	3426	419805080	419802548	0.000000e+00	3934.0
4	TraesCS2A01G336300	chr2D	95.510	245	4	4	428	668	419805314	419805073	5.360000e-103	385.0
5	TraesCS2A01G336300	chr2D	97.872	188	4	0	3	190	591541056	591541243	3.300000e-85	326.0
6	TraesCS2A01G336300	chr2B	95.194	2497	81	24	884	3352	492290631	492288146	0.000000e+00	3910.0
7	TraesCS2A01G336300	chr2B	93.117	247	8	5	428	668	492290869	492290626	1.510000e-93	353.0
8	TraesCS2A01G336300	chr6D	99.468	188	1	0	3	190	446643982	446644169	3.270000e-90	342.0
9	TraesCS2A01G336300	chr6D	86.813	91	6	4	3284	3374	437785650	437785734	2.810000e-16	97.1
10	TraesCS2A01G336300	chr3B	99.468	188	1	0	3	190	20828119	20828306	3.270000e-90	342.0
11	TraesCS2A01G336300	chr3B	99.468	188	1	0	3	190	296061382	296061569	3.270000e-90	342.0
12	TraesCS2A01G336300	chr3B	98.936	188	2	0	3	190	718685765	718685578	1.520000e-88	337.0
13	TraesCS2A01G336300	chr3B	80.392	204	19	4	209	392	20832078	20832280	5.960000e-28	135.0
14	TraesCS2A01G336300	chr3B	80.288	208	13	14	211	392	296066676	296066881	7.710000e-27	132.0
15	TraesCS2A01G336300	chr3B	91.667	72	6	0	316	387	752377801	752377730	2.180000e-17	100.0
16	TraesCS2A01G336300	chr3A	99.468	188	1	0	3	190	40287383	40287570	3.270000e-90	342.0
17	TraesCS2A01G336300	chr3A	95.722	187	5	1	206	392	40291617	40291800	7.190000e-77	298.0
18	TraesCS2A01G336300	chr7B	98.936	188	2	0	3	190	592741737	592741924	1.520000e-88	337.0
19	TraesCS2A01G336300	chr7B	80.531	113	19	3	3275	3385	256002613	256002724	2.190000e-12	84.2
20	TraesCS2A01G336300	chr5A	97.872	188	4	0	3	190	585421940	585422127	3.300000e-85	326.0
21	TraesCS2A01G336300	chr5A	91.979	187	12	1	206	392	585426202	585426385	3.390000e-65	259.0
22	TraesCS2A01G336300	chr4B	97.872	188	4	0	3	190	14570933	14571120	3.300000e-85	326.0
23	TraesCS2A01G336300	chr4B	82.051	117	11	5	283	392	14583706	14583819	1.310000e-14	91.6
24	TraesCS2A01G336300	chr4B	84.146	82	9	4	313	392	7743586	7743665	3.670000e-10	76.8
25	TraesCS2A01G336300	chr5B	80.693	202	15	12	212	393	599313385	599313188	5.960000e-28	135.0
26	TraesCS2A01G336300	chr5B	75.000	128	25	5	3296	3422	529540439	529540560	6.000000e-03	52.8
27	TraesCS2A01G336300	chr7D	81.081	111	18	3	3276	3384	339013821	339013712	6.090000e-13	86.1
28	TraesCS2A01G336300	chr7A	80.357	112	19	3	3275	3384	383432454	383432564	7.880000e-12	82.4
29	TraesCS2A01G336300	chr1B	78.448	116	21	4	3269	3384	633095040	633095151	4.740000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G336300	chr2A	570149056	570152481	3425	False	2965.5	4697	100.0000	1	3426	2	chr2A.!!$F1	3425
1	TraesCS2A01G336300	chr2D	419802548	419805314	2766	True	2159.5	3934	95.1110	428	3426	2	chr2D.!!$R1	2998
2	TraesCS2A01G336300	chr2B	492288146	492290869	2723	True	2131.5	3910	94.1555	428	3352	2	chr2B.!!$R1	2924
3	TraesCS2A01G336300	chr3B	20828119	20832280	4161	False	238.5	342	89.9300	3	392	2	chr3B.!!$F3	389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
395	4169	0.026285	CCACTTTCTAAATCGCGCCG	59.974	55.0	6.46	F
399	4173	0.390078	TTTCTAAATCGCGCCGTGGA	60.390	50.0	4.02	F
1378	5163	0.895530	CTCTCGTCTTTGGGTGCCTA	59.104	55.0	3.93	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1729	5514	0.242825	CTGAACAAGGGCTGTGCATG	59.757	55.0	0.00	43.1	4.06	R
1852	5637	0.873312	CATCCTCGGCATCACTCACG	60.873	60.0	0.00	0.0	4.35	R
3189	7009	0.175989	AACGCTAGCTTGTAGGAGGC	59.824	55.0	13.93	0.0	4.70	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
80	81	4.781934	ACTAGCAACCCATATTTCCTGTC	58.218	43.478	0.00	0.00	0.00	3.51
190	191	8.745837	CAAACAAGTAGCAAAGTAGAAACATTG	58.254	33.333	0.00	0.00	37.36	2.82
191	192	6.970484	ACAAGTAGCAAAGTAGAAACATTGG	58.030	36.000	0.00	0.00	35.38	3.16
193	194	7.284489	ACAAGTAGCAAAGTAGAAACATTGGAA	59.716	33.333	0.00	0.00	35.38	3.53
194	195	7.440523	AGTAGCAAAGTAGAAACATTGGAAG	57.559	36.000	0.00	0.00	35.38	3.46
196	197	6.319141	AGCAAAGTAGAAACATTGGAAGTC	57.681	37.500	0.00	0.00	35.38	3.01
197	198	5.827797	AGCAAAGTAGAAACATTGGAAGTCA	59.172	36.000	0.00	0.00	35.38	3.41
198	199	6.321181	AGCAAAGTAGAAACATTGGAAGTCAA	59.679	34.615	0.00	0.00	35.38	3.18
199	200	6.978080	GCAAAGTAGAAACATTGGAAGTCAAA	59.022	34.615	0.00	0.00	39.05	2.69
200	201	7.043391	GCAAAGTAGAAACATTGGAAGTCAAAC	60.043	37.037	0.00	0.00	39.05	2.93
201	202	7.639113	AAGTAGAAACATTGGAAGTCAAACA	57.361	32.000	0.00	0.00	39.05	2.83
205	206	6.799512	AGAAACATTGGAAGTCAAACAAGAG	58.200	36.000	0.00	0.00	39.05	2.85
207	208	3.319122	ACATTGGAAGTCAAACAAGAGCC	59.681	43.478	0.00	0.00	39.05	4.70
210	3964	3.565307	TGGAAGTCAAACAAGAGCCATT	58.435	40.909	0.00	0.00	0.00	3.16
214	3968	2.158475	AGTCAAACAAGAGCCATTGGGA	60.158	45.455	4.53	0.00	35.59	4.37
237	3991	4.266070	GACGGCGCCGCTAGATCA	62.266	66.667	46.22	0.00	44.19	2.92
238	3992	3.768185	GACGGCGCCGCTAGATCAA	62.768	63.158	46.22	0.00	44.19	2.57
279	4033	2.520260	GCTAAGCTGGCCATGGGG	60.520	66.667	15.13	0.00	37.18	4.96
282	4036	2.349100	CTAAGCTGGCCATGGGGGAG	62.349	65.000	15.13	0.00	40.01	4.30
313	4067	4.473520	CGTGCCCTGCCCTAGTGG	62.474	72.222	0.00	0.00	37.09	4.00
339	4113	4.617593	AGAGGGGAACGAGGAATTAAGTA	58.382	43.478	0.00	0.00	0.00	2.24
347	4121	7.146648	GGAACGAGGAATTAAGTAGGTCATAG	58.853	42.308	0.00	0.00	0.00	2.23
348	4122	7.201893	GGAACGAGGAATTAAGTAGGTCATAGT	60.202	40.741	0.00	0.00	0.00	2.12
351	4125	6.924060	CGAGGAATTAAGTAGGTCATAGTTGG	59.076	42.308	0.00	0.00	0.00	3.77
380	4154	1.538876	TCAGCCCACTTAGCCCACT	60.539	57.895	0.00	0.00	0.00	4.00
392	4166	1.369625	AGCCCACTTTCTAAATCGCG	58.630	50.000	0.00	0.00	0.00	5.87
393	4167	0.248094	GCCCACTTTCTAAATCGCGC	60.248	55.000	0.00	0.00	0.00	6.86
394	4168	0.377203	CCCACTTTCTAAATCGCGCC	59.623	55.000	0.00	0.00	0.00	6.53
395	4169	0.026285	CCACTTTCTAAATCGCGCCG	59.974	55.000	0.00	0.00	0.00	6.46
396	4170	0.719465	CACTTTCTAAATCGCGCCGT	59.281	50.000	0.00	0.00	0.00	5.68
397	4171	0.719465	ACTTTCTAAATCGCGCCGTG	59.281	50.000	0.00	0.00	0.00	4.94
398	4172	0.026285	CTTTCTAAATCGCGCCGTGG	59.974	55.000	0.00	0.00	0.00	4.94
399	4173	0.390078	TTTCTAAATCGCGCCGTGGA	60.390	50.000	0.00	0.00	0.00	4.02
400	4174	1.079875	TTCTAAATCGCGCCGTGGAC	61.080	55.000	0.00	0.00	0.00	4.02
401	4175	2.856346	CTAAATCGCGCCGTGGACG	61.856	63.158	0.00	0.00	39.44	4.79
418	4192	4.980805	GGTCCGTGTCCGCTTGCA	62.981	66.667	0.00	0.00	0.00	4.08
419	4193	3.414700	GTCCGTGTCCGCTTGCAG	61.415	66.667	0.00	0.00	0.00	4.41
423	4197	3.730761	GTGTCCGCTTGCAGCCTG	61.731	66.667	0.00	0.00	38.18	4.85
424	4198	3.939939	TGTCCGCTTGCAGCCTGA	61.940	61.111	0.00	0.00	38.18	3.86
425	4199	3.426568	GTCCGCTTGCAGCCTGAC	61.427	66.667	0.00	6.26	38.18	3.51
426	4200	4.704833	TCCGCTTGCAGCCTGACC	62.705	66.667	0.00	0.00	38.18	4.02
445	4219	4.888325	CCCTCCCTCCCTCGCCAT	62.888	72.222	0.00	0.00	0.00	4.40
446	4220	3.554342	CCTCCCTCCCTCGCCATG	61.554	72.222	0.00	0.00	0.00	3.66
494	4268	1.964373	GCGAAGGGGAAGAAACGCA	60.964	57.895	0.00	0.00	44.29	5.24
518	4292	1.257750	GCCAAAAGCCCCGGAAAGAT	61.258	55.000	0.73	0.00	34.35	2.40
519	4293	1.266178	CCAAAAGCCCCGGAAAGATT	58.734	50.000	0.73	0.00	0.00	2.40
555	4329	1.928714	TTCCCAATAACCTCCGCCCC	61.929	60.000	0.00	0.00	0.00	5.80
657	4437	2.360980	CCCCCACCGTCTCTCTCT	59.639	66.667	0.00	0.00	0.00	3.10
659	4439	1.755008	CCCCACCGTCTCTCTCTCC	60.755	68.421	0.00	0.00	0.00	3.71
666	4446	1.202651	CCGTCTCTCTCTCCCTCTCTC	60.203	61.905	0.00	0.00	0.00	3.20
667	4447	1.762957	CGTCTCTCTCTCCCTCTCTCT	59.237	57.143	0.00	0.00	0.00	3.10
1075	4859	3.132208	AGAAGAGGGTAAGTAAGGGGG	57.868	52.381	0.00	0.00	0.00	5.40
1116	4900	1.453197	GATTCGATTTGGGGGCCGT	60.453	57.895	0.00	0.00	0.00	5.68
1231	5015	3.782244	CAGTGCAAGCTCGACGCC	61.782	66.667	0.00	0.00	40.39	5.68
1378	5163	0.895530	CTCTCGTCTTTGGGTGCCTA	59.104	55.000	0.00	0.00	0.00	3.93
1389	5174	1.580994	GGGTGCCTATGGGGGAGTTT	61.581	60.000	0.00	0.00	35.62	2.66
1451	5236	7.386299	GGTGATCTAGGTGCTACAAATTGATAG	59.614	40.741	0.00	0.00	0.00	2.08
1625	5410	2.529136	CACACCCTCCACTCCCCA	60.529	66.667	0.00	0.00	0.00	4.96
1657	5442	1.729267	ATGCAAGGTCAAGGGGTGGT	61.729	55.000	0.00	0.00	0.00	4.16
1699	5484	3.866582	GCTGGAGCTACCGGGCAT	61.867	66.667	6.32	0.00	44.77	4.40
1729	5514	3.003763	AGCGACCTTGACTCCCCC	61.004	66.667	0.00	0.00	0.00	5.40
1864	5649	1.812922	CAGGAGCGTGAGTGATGCC	60.813	63.158	0.00	0.00	37.28	4.40
2009	5794	1.078143	CCCCCAGCAGCTACAAGTC	60.078	63.158	0.00	0.00	0.00	3.01
2351	6136	3.203040	AGGGTGCAGGAAGCTATACAATT	59.797	43.478	0.00	0.00	45.94	2.32
2378	6166	2.665000	CAGGAGAAGGAGCGCCAA	59.335	61.111	9.88	0.00	36.29	4.52
2492	6280	4.371786	CATGTTACTGTCGGATATGCTGT	58.628	43.478	0.00	0.00	0.00	4.40
2498	6286	3.440173	ACTGTCGGATATGCTGTTTTTGG	59.560	43.478	0.00	0.00	0.00	3.28
2500	6288	3.438781	TGTCGGATATGCTGTTTTTGGTC	59.561	43.478	0.00	0.00	0.00	4.02
2501	6289	3.689649	GTCGGATATGCTGTTTTTGGTCT	59.310	43.478	0.00	0.00	0.00	3.85
2506	6294	6.481976	CGGATATGCTGTTTTTGGTCTGTATA	59.518	38.462	0.00	0.00	0.00	1.47
2507	6295	7.518370	CGGATATGCTGTTTTTGGTCTGTATAC	60.518	40.741	0.00	0.00	0.00	1.47
2508	6296	7.282224	GGATATGCTGTTTTTGGTCTGTATACA	59.718	37.037	5.25	5.25	0.00	2.29
2746	6545	6.267928	TCACCTAAGTCTAGTTCTTGCTCTTT	59.732	38.462	11.21	0.00	0.00	2.52
2747	6546	6.931840	CACCTAAGTCTAGTTCTTGCTCTTTT	59.068	38.462	11.21	0.00	0.00	2.27
2748	6547	7.442666	CACCTAAGTCTAGTTCTTGCTCTTTTT	59.557	37.037	11.21	0.00	0.00	1.94
2867	6684	6.279513	TGTTTGGTCTTCACTGACAAAATT	57.720	33.333	0.00	0.00	40.61	1.82
2869	6686	5.514274	TTGGTCTTCACTGACAAAATTCC	57.486	39.130	0.00	0.00	38.61	3.01
2883	6700	8.684386	TGACAAAATTCCATGTTACTCAACTA	57.316	30.769	0.00	0.00	35.56	2.24
2896	6713	8.882415	TGTTACTCAACTAAAGTAAACTCCTG	57.118	34.615	0.00	0.00	40.04	3.86
3193	7013	9.595823	TCTATACAATGTACTTGTTTTAGCCTC	57.404	33.333	13.48	0.00	45.98	4.70
3285	7106	9.101325	TCGATCTTATTATACTCCCTCCATTTT	57.899	33.333	0.00	0.00	0.00	1.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	3.176411	TGGAAGATCTTGAAGAGCTGGA	58.824	45.455	14.28	0.00	40.58	3.86
1	2	3.623906	TGGAAGATCTTGAAGAGCTGG	57.376	47.619	14.28	0.00	40.58	4.85
190	191	3.305608	CCAATGGCTCTTGTTTGACTTCC	60.306	47.826	0.00	0.00	0.00	3.46
191	192	3.305608	CCCAATGGCTCTTGTTTGACTTC	60.306	47.826	0.00	0.00	0.00	3.01
193	194	2.158475	TCCCAATGGCTCTTGTTTGACT	60.158	45.455	0.00	0.00	0.00	3.41
194	195	2.238521	TCCCAATGGCTCTTGTTTGAC	58.761	47.619	0.00	0.00	0.00	3.18
196	197	2.028748	CCTTCCCAATGGCTCTTGTTTG	60.029	50.000	0.00	0.00	0.00	2.93
197	198	2.250924	CCTTCCCAATGGCTCTTGTTT	58.749	47.619	0.00	0.00	0.00	2.83
198	199	1.147817	ACCTTCCCAATGGCTCTTGTT	59.852	47.619	0.00	0.00	0.00	2.83
199	200	0.779997	ACCTTCCCAATGGCTCTTGT	59.220	50.000	0.00	0.00	0.00	3.16
200	201	1.180029	CACCTTCCCAATGGCTCTTG	58.820	55.000	0.00	0.00	0.00	3.02
201	202	0.040204	CCACCTTCCCAATGGCTCTT	59.960	55.000	0.00	0.00	0.00	2.85
205	206	2.046285	CGTCCACCTTCCCAATGGC	61.046	63.158	0.00	0.00	33.20	4.40
207	208	2.046285	GCCGTCCACCTTCCCAATG	61.046	63.158	0.00	0.00	0.00	2.82
227	3981	1.140852	TCCCAATGGTTGATCTAGCGG	59.859	52.381	0.00	0.00	0.00	5.52
237	3991	0.251165	CGTCCACCTTCCCAATGGTT	60.251	55.000	0.00	0.00	33.75	3.67
238	3992	1.378762	CGTCCACCTTCCCAATGGT	59.621	57.895	0.00	0.00	36.96	3.55
305	4059	3.221222	CCCTCTTCGCCACTAGGG	58.779	66.667	0.00	0.00	42.72	3.53
311	4065	2.602267	TCGTTCCCCTCTTCGCCA	60.602	61.111	0.00	0.00	0.00	5.69
312	4066	2.184579	CTCGTTCCCCTCTTCGCC	59.815	66.667	0.00	0.00	0.00	5.54
313	4067	1.885163	TTCCTCGTTCCCCTCTTCGC	61.885	60.000	0.00	0.00	0.00	4.70
339	4113	3.408634	CCACGTTTTCCAACTATGACCT	58.591	45.455	0.00	0.00	0.00	3.85
347	4121	0.030235	GCTGACCCACGTTTTCCAAC	59.970	55.000	0.00	0.00	0.00	3.77
348	4122	1.104577	GGCTGACCCACGTTTTCCAA	61.105	55.000	0.00	0.00	0.00	3.53
380	4154	0.390078	TCCACGGCGCGATTTAGAAA	60.390	50.000	12.10	0.00	0.00	2.52
401	4175	4.980805	TGCAAGCGGACACGGACC	62.981	66.667	0.00	0.00	41.36	4.46
402	4176	3.414700	CTGCAAGCGGACACGGAC	61.415	66.667	0.00	0.00	41.36	4.79
413	4187	2.045536	GGGAGGTCAGGCTGCAAG	60.046	66.667	10.34	0.00	0.00	4.01
414	4188	2.530151	AGGGAGGTCAGGCTGCAA	60.530	61.111	10.34	0.00	0.00	4.08
415	4189	3.005539	GAGGGAGGTCAGGCTGCA	61.006	66.667	10.34	0.00	0.00	4.41
416	4190	3.791586	GGAGGGAGGTCAGGCTGC	61.792	72.222	10.34	4.94	0.00	5.25
417	4191	3.086600	GGGAGGGAGGTCAGGCTG	61.087	72.222	8.58	8.58	0.00	4.85
418	4192	3.288381	AGGGAGGGAGGTCAGGCT	61.288	66.667	0.00	0.00	0.00	4.58
419	4193	2.766229	GAGGGAGGGAGGTCAGGC	60.766	72.222	0.00	0.00	0.00	4.85
420	4194	2.041405	GGAGGGAGGGAGGTCAGG	60.041	72.222	0.00	0.00	0.00	3.86
421	4195	2.041405	GGGAGGGAGGGAGGTCAG	60.041	72.222	0.00	0.00	0.00	3.51
422	4196	2.540910	AGGGAGGGAGGGAGGTCA	60.541	66.667	0.00	0.00	0.00	4.02
423	4197	2.284151	GAGGGAGGGAGGGAGGTC	59.716	72.222	0.00	0.00	0.00	3.85
424	4198	3.756783	CGAGGGAGGGAGGGAGGT	61.757	72.222	0.00	0.00	0.00	3.85
519	4293	3.054802	TGGGAAGAAAGCAAAGGCAAAAA	60.055	39.130	0.00	0.00	44.61	1.94
883	4663	2.542907	GCGCGGAGGAGAGAGAGAG	61.543	68.421	8.83	0.00	0.00	3.20
884	4664	2.515057	GCGCGGAGGAGAGAGAGA	60.515	66.667	8.83	0.00	0.00	3.10
885	4665	3.591835	GGCGCGGAGGAGAGAGAG	61.592	72.222	8.83	0.00	0.00	3.20
980	4764	3.756893	TCCTCTAGGCGGAGACCT	58.243	61.111	11.10	0.00	44.31	3.85
1075	4859	1.841663	GATCACACCACACACACGGC	61.842	60.000	0.00	0.00	0.00	5.68
1378	5163	3.722101	CCTAAGTATCCAAACTCCCCCAT	59.278	47.826	0.00	0.00	0.00	4.00
1389	5174	8.757307	AATAATCAGATTCCCCTAAGTATCCA	57.243	34.615	0.00	0.00	0.00	3.41
1451	5236	9.382275	ACCCAAAATATCATGTTGAATAAAAGC	57.618	29.630	0.00	0.00	0.00	3.51
1463	5248	9.826574	ATCAGAATTTGAACCCAAAATATCATG	57.173	29.630	0.00	0.00	44.49	3.07
1657	5442	2.568956	CTCCTTGTCATCCTCCAGAACA	59.431	50.000	0.00	0.00	0.00	3.18
1699	5484	3.378602	TCGCTGCCGCCTACTTCA	61.379	61.111	0.00	0.00	0.00	3.02
1729	5514	0.242825	CTGAACAAGGGCTGTGCATG	59.757	55.000	0.00	0.00	43.10	4.06
1852	5637	0.873312	CATCCTCGGCATCACTCACG	60.873	60.000	0.00	0.00	0.00	4.35
1864	5649	1.592669	GCCCGTGTCATCATCCTCG	60.593	63.158	0.00	0.00	0.00	4.63
2009	5794	3.535629	TTGCCAGAGGTGCCGACTG	62.536	63.158	9.97	9.97	0.00	3.51
2351	6136	0.906756	CCTTCTCCTGCAGACCCTGA	60.907	60.000	17.39	1.92	32.44	3.86
2378	6166	1.898154	GGGATAGACGCACTGGTGT	59.102	57.895	2.64	0.00	41.32	4.16
2714	6513	6.926313	AGAACTAGACTTAGGTGAACATGAC	58.074	40.000	0.00	0.00	0.00	3.06
2867	6684	9.485206	GAGTTTACTTTAGTTGAGTAACATGGA	57.515	33.333	0.00	0.00	38.82	3.41
2869	6686	9.490379	AGGAGTTTACTTTAGTTGAGTAACATG	57.510	33.333	0.00	0.00	38.82	3.21
2883	6700	8.422577	AATGATAAAAGGCAGGAGTTTACTTT	57.577	30.769	0.00	0.00	33.19	2.66
2933	6750	5.178252	CAGAGCCTGAAATGATAATACGGTG	59.822	44.000	0.00	0.00	32.44	4.94
3189	7009	0.175989	AACGCTAGCTTGTAGGAGGC	59.824	55.000	13.93	0.00	0.00	4.70
3191	7011	3.512033	AGAAACGCTAGCTTGTAGGAG	57.488	47.619	13.93	0.00	0.00	3.69
3193	7013	2.673368	CCAAGAAACGCTAGCTTGTAGG	59.327	50.000	13.93	2.30	37.82	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.