Multiple sequence alignment - TraesCS2A01G335900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G335900 chr2A 100.000 2453 0 0 1 2453 569906852 569904400 0.000000e+00 4530.0
1 TraesCS2A01G335900 chr2A 91.753 291 24 0 3 293 765574218 765574508 2.940000e-109 405.0
2 TraesCS2A01G335900 chr2D 91.576 1840 100 31 446 2249 420309379 420311199 0.000000e+00 2488.0
3 TraesCS2A01G335900 chr2D 93.284 134 8 1 313 445 427747616 427747483 1.920000e-46 196.0
4 TraesCS2A01G335900 chr2B 93.146 1459 66 17 491 1920 492793022 492794475 0.000000e+00 2109.0
5 TraesCS2A01G335900 chr2B 91.367 139 8 1 313 447 424338930 424338792 1.160000e-43 187.0
6 TraesCS2A01G335900 chr2B 86.275 51 7 0 865 915 465826033 465826083 3.410000e-04 56.5
7 TraesCS2A01G335900 chr5D 81.073 708 124 9 827 1529 480462533 480463235 7.660000e-155 556.0
8 TraesCS2A01G335900 chr5D 90.000 290 29 0 1 290 505371910 505372199 2.300000e-100 375.0
9 TraesCS2A01G335900 chr5A 79.632 707 136 7 827 1529 599205430 599206132 3.640000e-138 501.0
10 TraesCS2A01G335900 chr5A 87.307 323 27 3 1 309 447629382 447629060 8.340000e-95 357.0
11 TraesCS2A01G335900 chr3D 92.977 299 18 2 2 298 601004118 601003821 1.350000e-117 433.0
12 TraesCS2A01G335900 chr3D 91.241 137 12 0 313 449 371963139 371963003 1.160000e-43 187.0
13 TraesCS2A01G335900 chr3D 91.111 135 12 0 313 447 257314768 257314634 1.500000e-42 183.0
14 TraesCS2A01G335900 chr3D 90.511 137 13 0 313 449 408465166 408465302 5.390000e-42 182.0
15 TraesCS2A01G335900 chr1A 91.205 307 27 0 6 312 447639829 447640135 3.770000e-113 418.0
16 TraesCS2A01G335900 chr1A 90.970 299 27 0 1 299 572681980 572682278 1.060000e-108 403.0
17 TraesCS2A01G335900 chr3A 92.150 293 23 0 1 293 111880877 111881169 4.880000e-112 414.0
18 TraesCS2A01G335900 chr6A 89.068 311 33 1 1 311 54372457 54372148 3.830000e-103 385.0
19 TraesCS2A01G335900 chr6A 88.608 316 36 0 2 317 540151403 540151088 3.830000e-103 385.0
20 TraesCS2A01G335900 chrUn 90.034 291 29 0 1 291 370989594 370989304 6.400000e-101 377.0
21 TraesCS2A01G335900 chr7D 91.852 135 11 0 313 447 306298305 306298171 3.220000e-44 189.0
22 TraesCS2A01G335900 chr6D 92.308 130 10 0 313 442 278807998 278808127 4.170000e-43 185.0
23 TraesCS2A01G335900 chr4D 90.511 137 13 0 313 449 325743146 325743282 5.390000e-42 182.0
24 TraesCS2A01G335900 chr4A 90.511 137 13 0 313 449 52368698 52368834 5.390000e-42 182.0
25 TraesCS2A01G335900 chr3B 80.882 204 26 6 1055 1245 824387383 824387180 5.470000e-32 148.0
26 TraesCS2A01G335900 chr7A 82.209 163 20 5 1092 1245 49367750 49367588 5.500000e-27 132.0
27 TraesCS2A01G335900 chr5B 83.721 129 16 3 307 430 426650038 426650166 1.540000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G335900 chr2A 569904400 569906852 2452 True 4530 4530 100.000 1 2453 1 chr2A.!!$R1 2452
1 TraesCS2A01G335900 chr2D 420309379 420311199 1820 False 2488 2488 91.576 446 2249 1 chr2D.!!$F1 1803
2 TraesCS2A01G335900 chr2B 492793022 492794475 1453 False 2109 2109 93.146 491 1920 1 chr2B.!!$F2 1429
3 TraesCS2A01G335900 chr5D 480462533 480463235 702 False 556 556 81.073 827 1529 1 chr5D.!!$F1 702
4 TraesCS2A01G335900 chr5A 599205430 599206132 702 False 501 501 79.632 827 1529 1 chr5A.!!$F1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.033405 CCTAAGACCACGGGAGAGGA 60.033 60.0 0.0 0.0 43.94 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1613 1641 0.248296 GCAAGTTCGCGGTGACAAAA 60.248 50.0 6.13 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.743195 GAGACACATCTCCACACGC 58.257 57.895 0.00 0.00 45.06 5.34
24 25 0.737715 GAGACACATCTCCACACGCC 60.738 60.000 0.00 0.00 45.06 5.68
25 26 1.741770 GACACATCTCCACACGCCC 60.742 63.158 0.00 0.00 0.00 6.13
26 27 2.347114 CACATCTCCACACGCCCA 59.653 61.111 0.00 0.00 0.00 5.36
27 28 2.034879 CACATCTCCACACGCCCAC 61.035 63.158 0.00 0.00 0.00 4.61
28 29 2.436646 CATCTCCACACGCCCACC 60.437 66.667 0.00 0.00 0.00 4.61
29 30 4.082523 ATCTCCACACGCCCACCG 62.083 66.667 0.00 0.00 44.21 4.94
34 35 4.735132 CACACGCCCACCGACGAT 62.735 66.667 0.00 0.00 41.02 3.73
35 36 4.735132 ACACGCCCACCGACGATG 62.735 66.667 0.00 0.00 41.02 3.84
38 39 4.201679 CGCCCACCGACGATGCTA 62.202 66.667 0.00 0.00 40.02 3.49
39 40 2.279517 GCCCACCGACGATGCTAG 60.280 66.667 0.00 0.00 0.00 3.42
40 41 2.782222 GCCCACCGACGATGCTAGA 61.782 63.158 0.00 0.00 0.00 2.43
41 42 1.065928 CCCACCGACGATGCTAGAC 59.934 63.158 0.00 0.00 0.00 2.59
42 43 1.663379 CCCACCGACGATGCTAGACA 61.663 60.000 0.00 0.00 0.00 3.41
43 44 0.525668 CCACCGACGATGCTAGACAC 60.526 60.000 0.00 0.00 0.00 3.67
44 45 0.170339 CACCGACGATGCTAGACACA 59.830 55.000 0.00 0.00 0.00 3.72
45 46 0.170561 ACCGACGATGCTAGACACAC 59.829 55.000 0.00 0.00 0.00 3.82
46 47 0.525668 CCGACGATGCTAGACACACC 60.526 60.000 0.00 0.00 0.00 4.16
47 48 0.170339 CGACGATGCTAGACACACCA 59.830 55.000 0.00 0.00 0.00 4.17
48 49 1.202302 CGACGATGCTAGACACACCAT 60.202 52.381 0.00 0.00 0.00 3.55
49 50 2.464865 GACGATGCTAGACACACCATC 58.535 52.381 0.00 0.00 0.00 3.51
51 52 1.858091 GATGCTAGACACACCATCGG 58.142 55.000 0.00 0.00 0.00 4.18
52 53 0.465705 ATGCTAGACACACCATCGGG 59.534 55.000 0.00 0.00 41.29 5.14
53 54 1.144057 GCTAGACACACCATCGGGG 59.856 63.158 0.00 0.00 44.81 5.73
54 55 1.144057 CTAGACACACCATCGGGGC 59.856 63.158 0.00 0.00 42.05 5.80
55 56 2.629050 CTAGACACACCATCGGGGCG 62.629 65.000 0.00 0.00 42.05 6.13
74 75 3.862991 GGGCTAGGCGGGGAGAAC 61.863 72.222 10.58 0.00 0.00 3.01
75 76 3.862991 GGCTAGGCGGGGAGAACC 61.863 72.222 0.00 0.00 39.11 3.62
76 77 2.764547 GCTAGGCGGGGAGAACCT 60.765 66.667 0.00 0.00 40.03 3.50
77 78 2.368011 GCTAGGCGGGGAGAACCTT 61.368 63.158 0.00 0.00 40.03 3.50
78 79 1.047034 GCTAGGCGGGGAGAACCTTA 61.047 60.000 0.00 0.00 40.03 2.69
79 80 1.718280 CTAGGCGGGGAGAACCTTAT 58.282 55.000 0.00 0.00 40.03 1.73
80 81 2.047830 CTAGGCGGGGAGAACCTTATT 58.952 52.381 0.00 0.00 40.03 1.40
81 82 0.837940 AGGCGGGGAGAACCTTATTC 59.162 55.000 0.00 0.00 40.03 1.75
82 83 0.837940 GGCGGGGAGAACCTTATTCT 59.162 55.000 0.00 0.00 40.03 2.40
83 84 2.044758 GGCGGGGAGAACCTTATTCTA 58.955 52.381 0.00 0.00 40.03 2.10
84 85 2.638363 GGCGGGGAGAACCTTATTCTAT 59.362 50.000 0.00 0.00 40.03 1.98
85 86 3.306849 GGCGGGGAGAACCTTATTCTATC 60.307 52.174 0.00 0.00 40.03 2.08
86 87 3.579151 GCGGGGAGAACCTTATTCTATCT 59.421 47.826 0.00 0.00 40.03 1.98
87 88 4.040584 GCGGGGAGAACCTTATTCTATCTT 59.959 45.833 0.00 0.00 40.03 2.40
88 89 5.785243 CGGGGAGAACCTTATTCTATCTTC 58.215 45.833 0.00 0.00 40.03 2.87
89 90 5.304614 CGGGGAGAACCTTATTCTATCTTCA 59.695 44.000 0.00 0.00 40.03 3.02
90 91 6.517529 CGGGGAGAACCTTATTCTATCTTCAG 60.518 46.154 0.00 0.00 40.03 3.02
91 92 6.239743 GGGGAGAACCTTATTCTATCTTCAGG 60.240 46.154 0.00 0.00 40.03 3.86
92 93 6.239743 GGGAGAACCTTATTCTATCTTCAGGG 60.240 46.154 0.00 0.00 35.85 4.45
93 94 6.555360 GGAGAACCTTATTCTATCTTCAGGGA 59.445 42.308 0.00 0.00 0.00 4.20
94 95 7.256154 GGAGAACCTTATTCTATCTTCAGGGAG 60.256 44.444 0.00 0.00 0.00 4.30
95 96 5.816955 ACCTTATTCTATCTTCAGGGAGC 57.183 43.478 0.00 0.00 0.00 4.70
96 97 4.595350 ACCTTATTCTATCTTCAGGGAGCC 59.405 45.833 0.00 0.00 0.00 4.70
97 98 4.322349 CCTTATTCTATCTTCAGGGAGCCG 60.322 50.000 0.00 0.00 0.00 5.52
98 99 2.160721 TTCTATCTTCAGGGAGCCGT 57.839 50.000 0.00 0.00 0.00 5.68
99 100 1.693627 TCTATCTTCAGGGAGCCGTC 58.306 55.000 0.00 0.00 0.00 4.79
100 101 0.312416 CTATCTTCAGGGAGCCGTCG 59.688 60.000 0.00 0.00 0.00 5.12
101 102 1.735376 TATCTTCAGGGAGCCGTCGC 61.735 60.000 0.00 0.00 35.85 5.19
102 103 4.821589 CTTCAGGGAGCCGTCGCC 62.822 72.222 0.00 0.00 36.26 5.54
112 113 4.099170 CCGTCGCCGTCTCGTCTT 62.099 66.667 0.00 0.00 0.00 3.01
113 114 2.573689 CGTCGCCGTCTCGTCTTC 60.574 66.667 0.00 0.00 0.00 2.87
114 115 2.202453 GTCGCCGTCTCGTCTTCC 60.202 66.667 0.00 0.00 0.00 3.46
115 116 2.359602 TCGCCGTCTCGTCTTCCT 60.360 61.111 0.00 0.00 0.00 3.36
116 117 2.202492 CGCCGTCTCGTCTTCCTG 60.202 66.667 0.00 0.00 0.00 3.86
117 118 2.687805 CGCCGTCTCGTCTTCCTGA 61.688 63.158 0.00 0.00 0.00 3.86
118 119 1.137825 GCCGTCTCGTCTTCCTGAG 59.862 63.158 0.00 0.00 0.00 3.35
119 120 1.137825 CCGTCTCGTCTTCCTGAGC 59.862 63.158 0.00 0.00 32.20 4.26
120 121 1.587043 CCGTCTCGTCTTCCTGAGCA 61.587 60.000 0.00 0.00 32.20 4.26
121 122 0.179176 CGTCTCGTCTTCCTGAGCAG 60.179 60.000 0.00 0.00 32.20 4.24
132 133 2.633860 CTGAGCAGGACACAAACCC 58.366 57.895 0.00 0.00 0.00 4.11
133 134 0.109342 CTGAGCAGGACACAAACCCT 59.891 55.000 0.00 0.00 0.00 4.34
134 135 1.347707 CTGAGCAGGACACAAACCCTA 59.652 52.381 0.00 0.00 0.00 3.53
135 136 1.771854 TGAGCAGGACACAAACCCTAA 59.228 47.619 0.00 0.00 0.00 2.69
136 137 2.152016 GAGCAGGACACAAACCCTAAC 58.848 52.381 0.00 0.00 0.00 2.34
137 138 1.493022 AGCAGGACACAAACCCTAACA 59.507 47.619 0.00 0.00 0.00 2.41
138 139 2.092103 AGCAGGACACAAACCCTAACAA 60.092 45.455 0.00 0.00 0.00 2.83
139 140 2.691011 GCAGGACACAAACCCTAACAAA 59.309 45.455 0.00 0.00 0.00 2.83
140 141 3.131400 GCAGGACACAAACCCTAACAAAA 59.869 43.478 0.00 0.00 0.00 2.44
141 142 4.202212 GCAGGACACAAACCCTAACAAAAT 60.202 41.667 0.00 0.00 0.00 1.82
142 143 5.010213 GCAGGACACAAACCCTAACAAAATA 59.990 40.000 0.00 0.00 0.00 1.40
143 144 6.443792 CAGGACACAAACCCTAACAAAATAC 58.556 40.000 0.00 0.00 0.00 1.89
144 145 5.239963 AGGACACAAACCCTAACAAAATACG 59.760 40.000 0.00 0.00 0.00 3.06
145 146 5.239087 GGACACAAACCCTAACAAAATACGA 59.761 40.000 0.00 0.00 0.00 3.43
146 147 6.238703 GGACACAAACCCTAACAAAATACGAA 60.239 38.462 0.00 0.00 0.00 3.85
147 148 7.098074 ACACAAACCCTAACAAAATACGAAA 57.902 32.000 0.00 0.00 0.00 3.46
148 149 7.545489 ACACAAACCCTAACAAAATACGAAAA 58.455 30.769 0.00 0.00 0.00 2.29
149 150 8.033626 ACACAAACCCTAACAAAATACGAAAAA 58.966 29.630 0.00 0.00 0.00 1.94
168 169 3.801114 AAACAACTGAAAACAGAGCCC 57.199 42.857 0.00 0.00 0.00 5.19
169 170 2.736670 ACAACTGAAAACAGAGCCCT 57.263 45.000 0.00 0.00 0.00 5.19
170 171 2.576615 ACAACTGAAAACAGAGCCCTC 58.423 47.619 0.00 0.00 0.00 4.30
171 172 2.173569 ACAACTGAAAACAGAGCCCTCT 59.826 45.455 0.00 0.00 41.37 3.69
172 173 2.810852 CAACTGAAAACAGAGCCCTCTC 59.189 50.000 0.00 0.00 37.98 3.20
173 174 1.001406 ACTGAAAACAGAGCCCTCTCG 59.999 52.381 0.00 0.00 44.02 4.04
174 175 1.001406 CTGAAAACAGAGCCCTCTCGT 59.999 52.381 0.00 0.00 44.02 4.18
175 176 1.000955 TGAAAACAGAGCCCTCTCGTC 59.999 52.381 0.00 0.00 44.02 4.20
176 177 0.038159 AAAACAGAGCCCTCTCGTCG 60.038 55.000 0.00 0.00 44.02 5.12
177 178 0.894184 AAACAGAGCCCTCTCGTCGA 60.894 55.000 0.00 0.00 44.02 4.20
178 179 1.587933 AACAGAGCCCTCTCGTCGAC 61.588 60.000 5.18 5.18 44.02 4.20
179 180 2.041115 CAGAGCCCTCTCGTCGACA 61.041 63.158 17.16 1.87 44.02 4.35
180 181 1.303398 AGAGCCCTCTCGTCGACAA 60.303 57.895 17.16 0.00 44.02 3.18
181 182 1.137825 GAGCCCTCTCGTCGACAAG 59.862 63.158 17.16 6.80 0.00 3.16
182 183 2.182030 GCCCTCTCGTCGACAAGG 59.818 66.667 17.16 17.37 0.00 3.61
183 184 2.885861 CCCTCTCGTCGACAAGGG 59.114 66.667 25.05 25.05 42.47 3.95
184 185 2.182030 CCTCTCGTCGACAAGGGC 59.818 66.667 17.16 0.00 0.00 5.19
185 186 2.182030 CTCTCGTCGACAAGGGCC 59.818 66.667 17.16 0.00 0.00 5.80
186 187 3.685214 CTCTCGTCGACAAGGGCCG 62.685 68.421 17.16 0.00 0.00 6.13
187 188 3.744719 CTCGTCGACAAGGGCCGA 61.745 66.667 17.16 4.04 0.00 5.54
188 189 3.685214 CTCGTCGACAAGGGCCGAG 62.685 68.421 17.16 10.51 39.02 4.63
189 190 3.744719 CGTCGACAAGGGCCGAGA 61.745 66.667 17.16 0.00 35.31 4.04
190 191 2.893398 GTCGACAAGGGCCGAGAT 59.107 61.111 11.55 0.00 35.31 2.75
191 192 1.227002 GTCGACAAGGGCCGAGATC 60.227 63.158 11.55 0.00 35.31 2.75
192 193 2.107141 CGACAAGGGCCGAGATCC 59.893 66.667 0.00 0.00 0.00 3.36
193 194 2.721167 CGACAAGGGCCGAGATCCA 61.721 63.158 0.00 0.00 0.00 3.41
194 195 1.153349 GACAAGGGCCGAGATCCAC 60.153 63.158 0.00 0.00 0.00 4.02
195 196 2.190578 CAAGGGCCGAGATCCACC 59.809 66.667 0.00 0.00 0.00 4.61
196 197 2.285368 AAGGGCCGAGATCCACCA 60.285 61.111 0.00 0.00 0.00 4.17
197 198 2.670148 AAGGGCCGAGATCCACCAC 61.670 63.158 0.00 0.00 0.00 4.16
198 199 4.530857 GGGCCGAGATCCACCACG 62.531 72.222 0.00 0.00 0.00 4.94
201 202 4.873129 CCGAGATCCACCACGCCG 62.873 72.222 0.00 0.00 0.00 6.46
205 206 4.856801 GATCCACCACGCCGCCAT 62.857 66.667 0.00 0.00 0.00 4.40
216 217 2.203209 CCGCCATGGCCCTAAGAC 60.203 66.667 30.79 1.03 37.98 3.01
217 218 2.203209 CGCCATGGCCCTAAGACC 60.203 66.667 30.79 0.24 37.98 3.85
218 219 3.006677 GCCATGGCCCTAAGACCA 58.993 61.111 27.24 0.00 41.06 4.02
219 220 1.453928 GCCATGGCCCTAAGACCAC 60.454 63.158 27.24 0.00 39.19 4.16
220 221 1.153168 CCATGGCCCTAAGACCACG 60.153 63.158 0.00 0.00 39.19 4.94
221 222 1.153168 CATGGCCCTAAGACCACGG 60.153 63.158 0.00 0.00 39.19 4.94
222 223 2.375345 ATGGCCCTAAGACCACGGG 61.375 63.158 0.00 0.00 39.19 5.28
223 224 2.686106 GGCCCTAAGACCACGGGA 60.686 66.667 0.00 0.00 40.55 5.14
224 225 2.732619 GGCCCTAAGACCACGGGAG 61.733 68.421 0.00 0.00 40.55 4.30
225 226 1.684734 GCCCTAAGACCACGGGAGA 60.685 63.158 0.00 0.00 40.55 3.71
226 227 1.677637 GCCCTAAGACCACGGGAGAG 61.678 65.000 0.00 0.00 40.55 3.20
227 228 1.043673 CCCTAAGACCACGGGAGAGG 61.044 65.000 0.00 0.00 46.82 3.69
228 229 0.033405 CCTAAGACCACGGGAGAGGA 60.033 60.000 0.00 0.00 43.94 3.71
229 230 1.394618 CTAAGACCACGGGAGAGGAG 58.605 60.000 0.00 0.00 43.94 3.69
230 231 0.033405 TAAGACCACGGGAGAGGAGG 60.033 60.000 0.00 0.00 43.94 4.30
231 232 3.462678 GACCACGGGAGAGGAGGC 61.463 72.222 0.00 0.00 43.94 4.70
238 239 4.816984 GGAGAGGAGGCGGACCGA 62.817 72.222 20.50 0.00 42.76 4.69
239 240 2.519780 GAGAGGAGGCGGACCGAT 60.520 66.667 20.50 4.61 42.76 4.18
240 241 2.835431 AGAGGAGGCGGACCGATG 60.835 66.667 20.50 0.00 42.76 3.84
241 242 3.917760 GAGGAGGCGGACCGATGG 61.918 72.222 20.50 0.00 42.76 3.51
266 267 3.477346 GGCGGGAGGTAGGGGAAC 61.477 72.222 0.00 0.00 0.00 3.62
288 289 4.910458 CCTAGACTTTTCTTGGGGAAGA 57.090 45.455 0.00 0.00 40.16 2.87
289 290 4.837972 CCTAGACTTTTCTTGGGGAAGAG 58.162 47.826 0.00 0.00 40.16 2.85
290 291 3.797559 AGACTTTTCTTGGGGAAGAGG 57.202 47.619 0.00 0.00 39.56 3.69
291 292 2.163509 GACTTTTCTTGGGGAAGAGGC 58.836 52.381 0.00 0.00 39.56 4.70
292 293 1.783365 ACTTTTCTTGGGGAAGAGGCT 59.217 47.619 0.00 0.00 39.56 4.58
293 294 2.165998 CTTTTCTTGGGGAAGAGGCTG 58.834 52.381 0.00 0.00 33.92 4.85
294 295 1.149101 TTTCTTGGGGAAGAGGCTGT 58.851 50.000 0.00 0.00 35.16 4.40
295 296 0.401738 TTCTTGGGGAAGAGGCTGTG 59.598 55.000 0.00 0.00 0.00 3.66
296 297 0.768221 TCTTGGGGAAGAGGCTGTGT 60.768 55.000 0.00 0.00 0.00 3.72
297 298 0.111253 CTTGGGGAAGAGGCTGTGTT 59.889 55.000 0.00 0.00 0.00 3.32
298 299 0.110486 TTGGGGAAGAGGCTGTGTTC 59.890 55.000 0.00 0.00 0.00 3.18
299 300 1.376037 GGGGAAGAGGCTGTGTTCG 60.376 63.158 0.00 0.00 28.71 3.95
300 301 1.376037 GGGAAGAGGCTGTGTTCGG 60.376 63.158 0.00 0.00 28.71 4.30
301 302 1.376037 GGAAGAGGCTGTGTTCGGG 60.376 63.158 0.00 0.00 28.71 5.14
302 303 1.371558 GAAGAGGCTGTGTTCGGGT 59.628 57.895 0.00 0.00 0.00 5.28
303 304 0.670854 GAAGAGGCTGTGTTCGGGTC 60.671 60.000 0.00 0.00 0.00 4.46
304 305 2.047179 GAGGCTGTGTTCGGGTCC 60.047 66.667 0.00 0.00 0.00 4.46
305 306 3.607370 GAGGCTGTGTTCGGGTCCC 62.607 68.421 0.00 0.00 0.00 4.46
306 307 3.948719 GGCTGTGTTCGGGTCCCA 61.949 66.667 9.12 0.00 0.00 4.37
307 308 2.112297 GCTGTGTTCGGGTCCCAA 59.888 61.111 9.12 0.00 0.00 4.12
308 309 1.966451 GCTGTGTTCGGGTCCCAAG 60.966 63.158 9.12 0.00 0.00 3.61
309 310 1.450211 CTGTGTTCGGGTCCCAAGT 59.550 57.895 9.12 0.00 0.00 3.16
310 311 0.682852 CTGTGTTCGGGTCCCAAGTA 59.317 55.000 9.12 0.00 0.00 2.24
311 312 0.393820 TGTGTTCGGGTCCCAAGTAC 59.606 55.000 9.12 2.13 0.00 2.73
312 313 0.393820 GTGTTCGGGTCCCAAGTACA 59.606 55.000 9.12 3.08 0.00 2.90
313 314 0.682852 TGTTCGGGTCCCAAGTACAG 59.317 55.000 9.12 0.00 0.00 2.74
314 315 0.672711 GTTCGGGTCCCAAGTACAGC 60.673 60.000 9.12 0.00 0.00 4.40
315 316 1.122632 TTCGGGTCCCAAGTACAGCA 61.123 55.000 9.12 0.00 0.00 4.41
316 317 1.079127 CGGGTCCCAAGTACAGCAG 60.079 63.158 9.12 0.00 0.00 4.24
317 318 1.541310 CGGGTCCCAAGTACAGCAGA 61.541 60.000 9.12 0.00 0.00 4.26
318 319 0.250513 GGGTCCCAAGTACAGCAGAG 59.749 60.000 1.78 0.00 0.00 3.35
319 320 1.267121 GGTCCCAAGTACAGCAGAGA 58.733 55.000 0.00 0.00 0.00 3.10
320 321 1.623811 GGTCCCAAGTACAGCAGAGAA 59.376 52.381 0.00 0.00 0.00 2.87
321 322 2.354203 GGTCCCAAGTACAGCAGAGAAG 60.354 54.545 0.00 0.00 0.00 2.85
322 323 2.300437 GTCCCAAGTACAGCAGAGAAGT 59.700 50.000 0.00 0.00 0.00 3.01
323 324 2.300152 TCCCAAGTACAGCAGAGAAGTG 59.700 50.000 0.00 0.00 0.00 3.16
324 325 2.613977 CCCAAGTACAGCAGAGAAGTGG 60.614 54.545 0.00 0.00 0.00 4.00
325 326 2.037772 CCAAGTACAGCAGAGAAGTGGT 59.962 50.000 0.00 0.00 0.00 4.16
326 327 3.321497 CAAGTACAGCAGAGAAGTGGTC 58.679 50.000 0.00 0.00 0.00 4.02
327 328 2.883026 AGTACAGCAGAGAAGTGGTCT 58.117 47.619 0.00 0.00 40.25 3.85
328 329 4.035612 AGTACAGCAGAGAAGTGGTCTA 57.964 45.455 0.00 0.00 36.41 2.59
329 330 4.605183 AGTACAGCAGAGAAGTGGTCTAT 58.395 43.478 0.00 0.00 36.41 1.98
330 331 5.020132 AGTACAGCAGAGAAGTGGTCTATT 58.980 41.667 0.00 0.00 36.41 1.73
331 332 4.199432 ACAGCAGAGAAGTGGTCTATTG 57.801 45.455 0.00 0.00 36.41 1.90
332 333 3.580458 ACAGCAGAGAAGTGGTCTATTGT 59.420 43.478 0.00 0.00 36.41 2.71
333 334 4.040952 ACAGCAGAGAAGTGGTCTATTGTT 59.959 41.667 0.00 0.00 36.41 2.83
334 335 4.391216 CAGCAGAGAAGTGGTCTATTGTTG 59.609 45.833 0.00 0.00 36.41 3.33
335 336 3.126000 GCAGAGAAGTGGTCTATTGTTGC 59.874 47.826 0.00 0.00 36.41 4.17
336 337 4.318332 CAGAGAAGTGGTCTATTGTTGCA 58.682 43.478 0.00 0.00 36.41 4.08
337 338 4.756642 CAGAGAAGTGGTCTATTGTTGCAA 59.243 41.667 0.00 0.00 36.41 4.08
338 339 5.239306 CAGAGAAGTGGTCTATTGTTGCAAA 59.761 40.000 0.00 0.00 36.41 3.68
339 340 5.827797 AGAGAAGTGGTCTATTGTTGCAAAA 59.172 36.000 0.00 0.00 36.41 2.44
340 341 6.321181 AGAGAAGTGGTCTATTGTTGCAAAAA 59.679 34.615 4.10 4.10 36.41 1.94
341 342 7.014615 AGAGAAGTGGTCTATTGTTGCAAAAAT 59.985 33.333 18.63 18.63 36.41 1.82
342 343 6.925165 AGAAGTGGTCTATTGTTGCAAAAATG 59.075 34.615 22.67 13.38 33.56 2.32
343 344 4.990426 AGTGGTCTATTGTTGCAAAAATGC 59.010 37.500 22.67 13.04 0.00 3.56
344 345 4.152223 GTGGTCTATTGTTGCAAAAATGCC 59.848 41.667 22.67 19.96 0.00 4.40
345 346 4.202295 TGGTCTATTGTTGCAAAAATGCCA 60.202 37.500 22.67 21.82 0.00 4.92
346 347 4.937015 GGTCTATTGTTGCAAAAATGCCAT 59.063 37.500 22.67 1.56 0.00 4.40
347 348 6.105333 GGTCTATTGTTGCAAAAATGCCATA 58.895 36.000 22.67 3.63 0.00 2.74
348 349 6.593382 GGTCTATTGTTGCAAAAATGCCATAA 59.407 34.615 22.67 2.95 0.00 1.90
349 350 7.412891 GGTCTATTGTTGCAAAAATGCCATAAC 60.413 37.037 22.67 11.64 0.00 1.89
350 351 7.331687 GTCTATTGTTGCAAAAATGCCATAACT 59.668 33.333 22.67 0.00 0.00 2.24
351 352 6.880942 ATTGTTGCAAAAATGCCATAACTT 57.119 29.167 14.19 0.00 0.00 2.66
352 353 7.976135 ATTGTTGCAAAAATGCCATAACTTA 57.024 28.000 14.19 0.00 0.00 2.24
353 354 6.777526 TGTTGCAAAAATGCCATAACTTAC 57.222 33.333 0.00 0.00 0.00 2.34
354 355 5.698545 TGTTGCAAAAATGCCATAACTTACC 59.301 36.000 0.00 0.00 0.00 2.85
355 356 5.736951 TGCAAAAATGCCATAACTTACCT 57.263 34.783 0.00 0.00 0.00 3.08
356 357 5.719173 TGCAAAAATGCCATAACTTACCTC 58.281 37.500 0.00 0.00 0.00 3.85
357 358 5.244851 TGCAAAAATGCCATAACTTACCTCA 59.755 36.000 0.00 0.00 0.00 3.86
358 359 5.576774 GCAAAAATGCCATAACTTACCTCAC 59.423 40.000 0.00 0.00 0.00 3.51
359 360 6.686630 CAAAAATGCCATAACTTACCTCACA 58.313 36.000 0.00 0.00 0.00 3.58
360 361 6.515272 AAAATGCCATAACTTACCTCACAG 57.485 37.500 0.00 0.00 0.00 3.66
361 362 2.985896 TGCCATAACTTACCTCACAGC 58.014 47.619 0.00 0.00 0.00 4.40
362 363 2.571653 TGCCATAACTTACCTCACAGCT 59.428 45.455 0.00 0.00 0.00 4.24
363 364 2.939103 GCCATAACTTACCTCACAGCTG 59.061 50.000 13.48 13.48 0.00 4.24
364 365 3.619979 GCCATAACTTACCTCACAGCTGT 60.620 47.826 15.25 15.25 0.00 4.40
365 366 4.579869 CCATAACTTACCTCACAGCTGTT 58.420 43.478 18.94 5.14 0.00 3.16
366 367 5.730550 CCATAACTTACCTCACAGCTGTTA 58.269 41.667 18.94 8.92 0.00 2.41
367 368 5.812642 CCATAACTTACCTCACAGCTGTTAG 59.187 44.000 18.94 19.12 0.00 2.34
368 369 6.351033 CCATAACTTACCTCACAGCTGTTAGA 60.351 42.308 26.15 16.62 0.00 2.10
369 370 5.746990 AACTTACCTCACAGCTGTTAGAT 57.253 39.130 26.15 14.54 0.00 1.98
370 371 5.078411 ACTTACCTCACAGCTGTTAGATG 57.922 43.478 26.15 16.34 37.69 2.90
371 372 2.393271 ACCTCACAGCTGTTAGATGC 57.607 50.000 26.15 0.00 34.41 3.91
372 373 1.625315 ACCTCACAGCTGTTAGATGCA 59.375 47.619 26.15 0.00 34.41 3.96
373 374 2.277969 CCTCACAGCTGTTAGATGCAG 58.722 52.381 26.15 9.64 34.41 4.41
374 375 2.093816 CCTCACAGCTGTTAGATGCAGA 60.094 50.000 26.15 13.23 34.41 4.26
375 376 3.431905 CCTCACAGCTGTTAGATGCAGAT 60.432 47.826 26.15 0.00 34.41 2.90
376 377 4.202192 CCTCACAGCTGTTAGATGCAGATA 60.202 45.833 26.15 0.00 34.41 1.98
377 378 5.511031 CCTCACAGCTGTTAGATGCAGATAT 60.511 44.000 26.15 0.00 34.41 1.63
378 379 6.294955 CCTCACAGCTGTTAGATGCAGATATA 60.295 42.308 26.15 0.00 34.41 0.86
379 380 7.054491 TCACAGCTGTTAGATGCAGATATAA 57.946 36.000 18.94 0.00 34.41 0.98
380 381 7.674120 TCACAGCTGTTAGATGCAGATATAAT 58.326 34.615 18.94 0.00 34.41 1.28
381 382 7.601508 TCACAGCTGTTAGATGCAGATATAATG 59.398 37.037 18.94 0.00 34.41 1.90
382 383 6.877855 ACAGCTGTTAGATGCAGATATAATGG 59.122 38.462 15.25 0.00 34.41 3.16
383 384 6.877855 CAGCTGTTAGATGCAGATATAATGGT 59.122 38.462 5.25 0.00 36.12 3.55
384 385 7.064371 CAGCTGTTAGATGCAGATATAATGGTC 59.936 40.741 5.25 0.00 36.12 4.02
385 386 6.875726 GCTGTTAGATGCAGATATAATGGTCA 59.124 38.462 0.00 0.00 36.12 4.02
386 387 7.064371 GCTGTTAGATGCAGATATAATGGTCAG 59.936 40.741 0.00 0.00 36.12 3.51
387 388 8.193953 TGTTAGATGCAGATATAATGGTCAGA 57.806 34.615 0.00 0.00 0.00 3.27
388 389 8.650490 TGTTAGATGCAGATATAATGGTCAGAA 58.350 33.333 0.00 0.00 0.00 3.02
389 390 9.494271 GTTAGATGCAGATATAATGGTCAGAAA 57.506 33.333 0.00 0.00 0.00 2.52
391 392 8.563123 AGATGCAGATATAATGGTCAGAAATG 57.437 34.615 0.00 0.00 0.00 2.32
392 393 8.380867 AGATGCAGATATAATGGTCAGAAATGA 58.619 33.333 0.00 0.00 0.00 2.57
393 394 7.734924 TGCAGATATAATGGTCAGAAATGAC 57.265 36.000 0.00 0.00 38.04 3.06
394 395 6.424812 TGCAGATATAATGGTCAGAAATGACG 59.575 38.462 2.56 0.00 39.57 4.35
395 396 6.425114 GCAGATATAATGGTCAGAAATGACGT 59.575 38.462 0.00 0.00 39.57 4.34
396 397 7.598869 GCAGATATAATGGTCAGAAATGACGTA 59.401 37.037 0.00 0.00 39.57 3.57
397 398 9.645059 CAGATATAATGGTCAGAAATGACGTAT 57.355 33.333 0.00 3.67 39.57 3.06
398 399 9.645059 AGATATAATGGTCAGAAATGACGTATG 57.355 33.333 0.00 0.00 39.57 2.39
399 400 9.639601 GATATAATGGTCAGAAATGACGTATGA 57.360 33.333 0.00 0.00 39.57 2.15
400 401 7.715265 ATAATGGTCAGAAATGACGTATGAC 57.285 36.000 0.00 0.00 39.57 3.06
401 402 4.529109 TGGTCAGAAATGACGTATGACA 57.471 40.909 6.04 0.00 41.58 3.58
402 403 4.494484 TGGTCAGAAATGACGTATGACAG 58.506 43.478 6.04 0.00 41.58 3.51
403 404 4.219725 TGGTCAGAAATGACGTATGACAGA 59.780 41.667 6.04 0.00 41.58 3.41
404 405 4.563184 GGTCAGAAATGACGTATGACAGAC 59.437 45.833 6.04 0.00 41.58 3.51
405 406 5.161358 GTCAGAAATGACGTATGACAGACA 58.839 41.667 0.52 0.00 39.97 3.41
406 407 5.061064 GTCAGAAATGACGTATGACAGACAC 59.939 44.000 0.52 0.00 39.97 3.67
407 408 4.923281 CAGAAATGACGTATGACAGACACA 59.077 41.667 0.52 0.70 0.00 3.72
408 409 5.578336 CAGAAATGACGTATGACAGACACAT 59.422 40.000 0.52 3.00 0.00 3.21
409 410 5.807520 AGAAATGACGTATGACAGACACATC 59.192 40.000 9.29 1.31 0.00 3.06
410 411 4.718940 ATGACGTATGACAGACACATCA 57.281 40.909 0.52 1.63 0.00 3.07
411 412 4.718940 TGACGTATGACAGACACATCAT 57.281 40.909 0.52 0.00 38.99 2.45
412 413 4.672409 TGACGTATGACAGACACATCATC 58.328 43.478 0.52 0.00 36.87 2.92
413 414 4.157656 TGACGTATGACAGACACATCATCA 59.842 41.667 0.52 0.00 36.87 3.07
414 415 5.163519 TGACGTATGACAGACACATCATCAT 60.164 40.000 0.52 0.00 36.87 2.45
415 416 5.284864 ACGTATGACAGACACATCATCATC 58.715 41.667 0.52 0.00 36.87 2.92
416 417 5.163519 ACGTATGACAGACACATCATCATCA 60.164 40.000 0.52 0.00 36.87 3.07
417 418 5.174579 CGTATGACAGACACATCATCATCAC 59.825 44.000 0.52 0.00 36.87 3.06
418 419 3.865446 TGACAGACACATCATCATCACC 58.135 45.455 0.00 0.00 0.00 4.02
419 420 3.261390 TGACAGACACATCATCATCACCA 59.739 43.478 0.00 0.00 0.00 4.17
420 421 4.256110 GACAGACACATCATCATCACCAA 58.744 43.478 0.00 0.00 0.00 3.67
421 422 4.005650 ACAGACACATCATCATCACCAAC 58.994 43.478 0.00 0.00 0.00 3.77
422 423 4.259356 CAGACACATCATCATCACCAACT 58.741 43.478 0.00 0.00 0.00 3.16
423 424 4.094442 CAGACACATCATCATCACCAACTG 59.906 45.833 0.00 0.00 0.00 3.16
424 425 3.349927 ACACATCATCATCACCAACTGG 58.650 45.455 0.00 0.00 42.17 4.00
425 426 2.686405 CACATCATCATCACCAACTGGG 59.314 50.000 0.00 0.00 44.81 4.45
442 443 7.848128 CCAACTGGGTCTTTTATAGAAGTAGA 58.152 38.462 3.17 0.00 33.81 2.59
443 444 7.982354 CCAACTGGGTCTTTTATAGAAGTAGAG 59.018 40.741 3.17 0.00 33.81 2.43
444 445 8.750298 CAACTGGGTCTTTTATAGAAGTAGAGA 58.250 37.037 3.17 0.00 33.81 3.10
467 468 8.380743 AGAAATCTATGATCTGAAGCATTGTC 57.619 34.615 0.00 0.00 32.70 3.18
560 562 0.249699 AGTGAACACGATGGCAACGA 60.250 50.000 24.15 0.00 36.13 3.85
570 572 0.174845 ATGGCAACGAACGCTAGCTA 59.825 50.000 13.93 0.00 42.51 3.32
577 579 0.651042 CGAACGCTAGCTACGAGTCG 60.651 60.000 13.93 11.85 36.13 4.18
583 585 1.868498 GCTAGCTACGAGTCGACTGAT 59.132 52.381 25.58 13.13 0.00 2.90
584 586 3.058450 GCTAGCTACGAGTCGACTGATA 58.942 50.000 25.58 13.59 0.00 2.15
591 593 2.608546 ACGAGTCGACTGATAGCACTAC 59.391 50.000 25.58 2.95 0.00 2.73
597 599 2.731027 CGACTGATAGCACTACACGCAA 60.731 50.000 0.00 0.00 0.00 4.85
601 603 2.289133 TGATAGCACTACACGCAACCAA 60.289 45.455 0.00 0.00 0.00 3.67
602 604 2.465860 TAGCACTACACGCAACCAAT 57.534 45.000 0.00 0.00 0.00 3.16
606 608 2.724174 GCACTACACGCAACCAATTTTC 59.276 45.455 0.00 0.00 0.00 2.29
611 613 5.746721 ACTACACGCAACCAATTTTCTTTTC 59.253 36.000 0.00 0.00 0.00 2.29
642 656 1.003116 CAGAGACACAAACAGCAGTGC 60.003 52.381 7.13 7.13 39.30 4.40
672 686 2.498056 AAACCCCAACGCTGCCAAG 61.498 57.895 0.00 0.00 0.00 3.61
676 693 1.302511 CCCAACGCTGCCAAGTAGT 60.303 57.895 0.00 0.00 0.00 2.73
677 694 0.889186 CCCAACGCTGCCAAGTAGTT 60.889 55.000 0.00 0.00 0.00 2.24
681 698 1.792006 ACGCTGCCAAGTAGTTGTAC 58.208 50.000 9.42 2.08 30.95 2.90
682 699 0.713883 CGCTGCCAAGTAGTTGTACG 59.286 55.000 9.42 3.85 33.97 3.67
683 700 0.442699 GCTGCCAAGTAGTTGTACGC 59.557 55.000 9.42 6.35 33.97 4.42
684 701 1.790755 CTGCCAAGTAGTTGTACGCA 58.209 50.000 9.42 10.26 33.97 5.24
685 702 1.726791 CTGCCAAGTAGTTGTACGCAG 59.273 52.381 19.18 19.18 38.95 5.18
686 703 0.442699 GCCAAGTAGTTGTACGCAGC 59.557 55.000 9.42 0.91 33.97 5.25
687 704 1.790755 CCAAGTAGTTGTACGCAGCA 58.209 50.000 9.42 0.00 33.97 4.41
690 707 2.065993 AGTAGTTGTACGCAGCAGTG 57.934 50.000 0.00 0.00 33.97 3.66
694 711 2.250939 TTGTACGCAGCAGTGGCAC 61.251 57.895 10.29 10.29 44.61 5.01
738 765 4.307432 GTCCATCTCTTTCACTTTCACGA 58.693 43.478 0.00 0.00 0.00 4.35
745 772 5.011125 TCTCTTTCACTTTCACGATCTCCTT 59.989 40.000 0.00 0.00 0.00 3.36
750 777 3.677121 CACTTTCACGATCTCCTTGACAG 59.323 47.826 0.00 0.00 0.00 3.51
763 790 1.816863 TTGACAGCGTCCTCCTCCAC 61.817 60.000 6.30 0.00 0.00 4.02
794 822 1.093159 CCTCTCAAGCCTCAATGCAC 58.907 55.000 0.00 0.00 0.00 4.57
799 827 0.609957 CAAGCCTCAATGCACCTCCA 60.610 55.000 0.00 0.00 0.00 3.86
1200 1228 0.309922 TGCGTTTCTTCTCGACGAGT 59.690 50.000 23.41 0.00 38.99 4.18
1449 1477 1.909302 GAGAAGGTGGTCATCTGGGAA 59.091 52.381 0.00 0.00 0.00 3.97
1607 1635 5.010719 TGTTCATACAGAGAAAGAGAACGGT 59.989 40.000 0.00 0.00 37.34 4.83
1613 1641 2.900546 AGAGAAAGAGAACGGTCCACAT 59.099 45.455 0.00 0.00 0.00 3.21
1645 1673 3.243336 CGAACTTGCGTATATCCTAGCC 58.757 50.000 0.00 0.00 0.00 3.93
1840 1902 0.599204 CACTAGTGGTGCCGTTCGTT 60.599 55.000 15.49 0.00 39.22 3.85
1943 2005 1.472878 TGGCTTTGTTGCGTTTGTGTA 59.527 42.857 0.00 0.00 0.00 2.90
1962 2025 4.331168 GTGTAGCACATGATCCTGACTTTC 59.669 45.833 0.00 1.23 34.08 2.62
1973 2036 0.721718 CTGACTTTCGGACGCCATTC 59.278 55.000 0.00 0.00 0.00 2.67
1985 2048 0.374758 CGCCATTCGTCCAAGATGTG 59.625 55.000 0.00 0.00 0.00 3.21
2024 2087 0.823769 CCCTCATCCGACCGATCTGA 60.824 60.000 0.00 0.00 0.00 3.27
2136 2199 5.179929 GCATGGTTGCTTAAAAATTGCTTCT 59.820 36.000 0.00 0.00 45.77 2.85
2163 2227 6.715347 AAAAGTTCACCTAAAAGATGCACT 57.285 33.333 0.00 0.00 0.00 4.40
2170 2234 5.637810 TCACCTAAAAGATGCACTAGTTTCG 59.362 40.000 0.00 0.00 0.00 3.46
2171 2235 5.637810 CACCTAAAAGATGCACTAGTTTCGA 59.362 40.000 0.00 0.00 0.00 3.71
2172 2236 6.313905 CACCTAAAAGATGCACTAGTTTCGAT 59.686 38.462 0.00 0.00 0.00 3.59
2173 2237 6.879458 ACCTAAAAGATGCACTAGTTTCGATT 59.121 34.615 0.00 0.00 0.00 3.34
2174 2238 7.064728 ACCTAAAAGATGCACTAGTTTCGATTC 59.935 37.037 0.00 0.00 0.00 2.52
2202 2266 3.700538 TGGTTCCTGGTACGTACAGTAT 58.299 45.455 26.02 0.00 37.69 2.12
2220 2284 2.086610 ATATGCCATGTTGGTTCCCC 57.913 50.000 0.00 0.00 40.46 4.81
2224 2288 1.055849 GCCATGTTGGTTCCCCTTTT 58.944 50.000 0.00 0.00 40.46 2.27
2249 2313 4.929479 TCAGCCAAGGGTTTACATGTATT 58.071 39.130 6.36 0.00 0.00 1.89
2250 2314 5.329399 TCAGCCAAGGGTTTACATGTATTT 58.671 37.500 6.36 0.00 0.00 1.40
2251 2315 5.777732 TCAGCCAAGGGTTTACATGTATTTT 59.222 36.000 6.36 0.00 0.00 1.82
2252 2316 6.948886 TCAGCCAAGGGTTTACATGTATTTTA 59.051 34.615 6.36 0.00 0.00 1.52
2253 2317 7.451877 TCAGCCAAGGGTTTACATGTATTTTAA 59.548 33.333 6.36 0.00 0.00 1.52
2254 2318 8.091449 CAGCCAAGGGTTTACATGTATTTTAAA 58.909 33.333 6.36 0.00 0.00 1.52
2255 2319 8.311109 AGCCAAGGGTTTACATGTATTTTAAAG 58.689 33.333 6.36 0.00 0.00 1.85
2256 2320 7.547722 GCCAAGGGTTTACATGTATTTTAAAGG 59.452 37.037 6.36 6.23 0.00 3.11
2257 2321 8.038351 CCAAGGGTTTACATGTATTTTAAAGGG 58.962 37.037 6.36 0.00 0.00 3.95
2258 2322 8.590204 CAAGGGTTTACATGTATTTTAAAGGGT 58.410 33.333 6.36 0.00 0.00 4.34
2259 2323 9.825706 AAGGGTTTACATGTATTTTAAAGGGTA 57.174 29.630 6.36 0.00 0.00 3.69
2260 2324 9.470399 AGGGTTTACATGTATTTTAAAGGGTAG 57.530 33.333 6.36 0.00 0.00 3.18
2261 2325 9.465199 GGGTTTACATGTATTTTAAAGGGTAGA 57.535 33.333 6.36 0.00 0.00 2.59
2267 2331 9.185680 ACATGTATTTTAAAGGGTAGATTCACC 57.814 33.333 0.00 0.00 37.91 4.02
2334 2398 9.771140 AGATTTATATATAGAAACGGAGGGAGT 57.229 33.333 4.72 0.00 0.00 3.85
2335 2399 9.804758 GATTTATATATAGAAACGGAGGGAGTG 57.195 37.037 4.72 0.00 0.00 3.51
2336 2400 8.716674 TTTATATATAGAAACGGAGGGAGTGT 57.283 34.615 0.00 0.00 0.00 3.55
2337 2401 6.837471 ATATATAGAAACGGAGGGAGTGTC 57.163 41.667 0.00 0.00 0.00 3.67
2338 2402 1.171308 TAGAAACGGAGGGAGTGTCG 58.829 55.000 0.00 0.00 31.37 4.35
2339 2403 1.080025 GAAACGGAGGGAGTGTCGG 60.080 63.158 0.00 0.00 0.00 4.79
2340 2404 3.236003 AAACGGAGGGAGTGTCGGC 62.236 63.158 0.00 0.00 0.00 5.54
2341 2405 4.988716 ACGGAGGGAGTGTCGGCA 62.989 66.667 0.00 0.00 0.00 5.69
2342 2406 3.691342 CGGAGGGAGTGTCGGCAA 61.691 66.667 0.00 0.00 0.00 4.52
2343 2407 2.990479 GGAGGGAGTGTCGGCAAT 59.010 61.111 0.00 0.00 0.00 3.56
2344 2408 1.672854 CGGAGGGAGTGTCGGCAATA 61.673 60.000 0.00 0.00 0.00 1.90
2345 2409 0.105039 GGAGGGAGTGTCGGCAATAG 59.895 60.000 0.00 0.00 0.00 1.73
2346 2410 0.530870 GAGGGAGTGTCGGCAATAGC 60.531 60.000 0.00 0.00 41.10 2.97
2347 2411 0.978146 AGGGAGTGTCGGCAATAGCT 60.978 55.000 0.00 0.00 41.70 3.32
2348 2412 0.107654 GGGAGTGTCGGCAATAGCTT 60.108 55.000 0.00 0.00 41.70 3.74
2349 2413 1.291132 GGAGTGTCGGCAATAGCTTC 58.709 55.000 0.00 0.00 41.70 3.86
2350 2414 1.134670 GGAGTGTCGGCAATAGCTTCT 60.135 52.381 0.00 0.00 41.70 2.85
2351 2415 2.197577 GAGTGTCGGCAATAGCTTCTC 58.802 52.381 0.00 0.00 41.70 2.87
2352 2416 1.827969 AGTGTCGGCAATAGCTTCTCT 59.172 47.619 0.00 0.00 41.70 3.10
2353 2417 2.234908 AGTGTCGGCAATAGCTTCTCTT 59.765 45.455 0.00 0.00 41.70 2.85
2354 2418 2.349886 GTGTCGGCAATAGCTTCTCTTG 59.650 50.000 0.00 0.00 41.70 3.02
2355 2419 1.328986 GTCGGCAATAGCTTCTCTTGC 59.671 52.381 12.08 12.08 41.00 4.01
2356 2420 1.208052 TCGGCAATAGCTTCTCTTGCT 59.792 47.619 17.09 0.00 41.31 3.91
2357 2421 2.012673 CGGCAATAGCTTCTCTTGCTT 58.987 47.619 17.09 0.00 41.31 3.91
2358 2422 2.223203 CGGCAATAGCTTCTCTTGCTTG 60.223 50.000 17.09 10.05 41.31 4.01
2359 2423 2.751806 GGCAATAGCTTCTCTTGCTTGT 59.248 45.455 17.09 0.00 41.31 3.16
2360 2424 3.192212 GGCAATAGCTTCTCTTGCTTGTT 59.808 43.478 17.09 0.00 41.31 2.83
2361 2425 4.410448 GCAATAGCTTCTCTTGCTTGTTC 58.590 43.478 12.84 0.00 39.43 3.18
2362 2426 4.083110 GCAATAGCTTCTCTTGCTTGTTCA 60.083 41.667 12.84 0.00 39.43 3.18
2363 2427 5.392811 GCAATAGCTTCTCTTGCTTGTTCAT 60.393 40.000 12.84 0.00 39.43 2.57
2364 2428 6.618811 CAATAGCTTCTCTTGCTTGTTCATT 58.381 36.000 0.00 0.00 41.46 2.57
2365 2429 7.627088 GCAATAGCTTCTCTTGCTTGTTCATTA 60.627 37.037 12.84 0.00 39.43 1.90
2366 2430 7.928307 ATAGCTTCTCTTGCTTGTTCATTAA 57.072 32.000 0.00 0.00 41.46 1.40
2367 2431 6.830873 AGCTTCTCTTGCTTGTTCATTAAT 57.169 33.333 0.00 0.00 37.52 1.40
2368 2432 7.224522 AGCTTCTCTTGCTTGTTCATTAATT 57.775 32.000 0.00 0.00 37.52 1.40
2369 2433 7.664758 AGCTTCTCTTGCTTGTTCATTAATTT 58.335 30.769 0.00 0.00 37.52 1.82
2370 2434 8.146412 AGCTTCTCTTGCTTGTTCATTAATTTT 58.854 29.630 0.00 0.00 37.52 1.82
2371 2435 9.410556 GCTTCTCTTGCTTGTTCATTAATTTTA 57.589 29.630 0.00 0.00 0.00 1.52
2412 2476 8.788325 TTGAGAATTAAGTTACTTCCTTAGCC 57.212 34.615 0.00 0.00 0.00 3.93
2413 2477 7.913789 TGAGAATTAAGTTACTTCCTTAGCCA 58.086 34.615 0.00 0.00 0.00 4.75
2414 2478 7.822822 TGAGAATTAAGTTACTTCCTTAGCCAC 59.177 37.037 0.00 0.00 0.00 5.01
2415 2479 7.919151 AGAATTAAGTTACTTCCTTAGCCACT 58.081 34.615 0.00 0.00 0.00 4.00
2416 2480 8.383947 AGAATTAAGTTACTTCCTTAGCCACTT 58.616 33.333 0.00 0.00 35.02 3.16
2417 2481 9.662947 GAATTAAGTTACTTCCTTAGCCACTTA 57.337 33.333 0.00 0.00 33.58 2.24
2418 2482 9.445878 AATTAAGTTACTTCCTTAGCCACTTAC 57.554 33.333 0.00 0.00 34.10 2.34
2419 2483 5.417754 AGTTACTTCCTTAGCCACTTACC 57.582 43.478 0.00 0.00 0.00 2.85
2420 2484 4.081807 AGTTACTTCCTTAGCCACTTACCG 60.082 45.833 0.00 0.00 0.00 4.02
2421 2485 1.553704 ACTTCCTTAGCCACTTACCGG 59.446 52.381 0.00 0.00 0.00 5.28
2422 2486 1.829222 CTTCCTTAGCCACTTACCGGA 59.171 52.381 9.46 0.00 0.00 5.14
2423 2487 2.170012 TCCTTAGCCACTTACCGGAT 57.830 50.000 9.46 0.00 0.00 4.18
2424 2488 1.760613 TCCTTAGCCACTTACCGGATG 59.239 52.381 9.46 0.00 0.00 3.51
2425 2489 1.760613 CCTTAGCCACTTACCGGATGA 59.239 52.381 9.46 0.00 0.00 2.92
2426 2490 2.169769 CCTTAGCCACTTACCGGATGAA 59.830 50.000 9.46 0.00 0.00 2.57
2427 2491 3.370103 CCTTAGCCACTTACCGGATGAAA 60.370 47.826 9.46 0.00 0.00 2.69
2428 2492 2.871096 AGCCACTTACCGGATGAAAA 57.129 45.000 9.46 0.00 0.00 2.29
2429 2493 2.711542 AGCCACTTACCGGATGAAAAG 58.288 47.619 9.46 6.10 0.00 2.27
2430 2494 1.132453 GCCACTTACCGGATGAAAAGC 59.868 52.381 9.46 0.00 0.00 3.51
2431 2495 2.432444 CCACTTACCGGATGAAAAGCA 58.568 47.619 9.46 0.00 0.00 3.91
2432 2496 2.161609 CCACTTACCGGATGAAAAGCAC 59.838 50.000 9.46 0.00 0.00 4.40
2433 2497 2.811431 CACTTACCGGATGAAAAGCACA 59.189 45.455 9.46 0.00 0.00 4.57
2434 2498 2.812011 ACTTACCGGATGAAAAGCACAC 59.188 45.455 9.46 0.00 0.00 3.82
2435 2499 2.552599 TACCGGATGAAAAGCACACA 57.447 45.000 9.46 0.00 0.00 3.72
2436 2500 0.951558 ACCGGATGAAAAGCACACAC 59.048 50.000 9.46 0.00 0.00 3.82
2437 2501 1.238439 CCGGATGAAAAGCACACACT 58.762 50.000 0.00 0.00 0.00 3.55
2438 2502 1.608590 CCGGATGAAAAGCACACACTT 59.391 47.619 0.00 0.00 0.00 3.16
2439 2503 2.034558 CCGGATGAAAAGCACACACTTT 59.965 45.455 0.00 0.00 41.60 2.66
2441 2505 4.111916 CGGATGAAAAGCACACACTTTTT 58.888 39.130 3.97 0.00 46.99 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.293498 GGCGTGTGGAGATGTGTCT 59.707 57.895 0.00 0.00 37.42 3.41
7 8 1.741770 GGGCGTGTGGAGATGTGTC 60.742 63.158 0.00 0.00 0.00 3.67
8 9 2.347490 GGGCGTGTGGAGATGTGT 59.653 61.111 0.00 0.00 0.00 3.72
9 10 2.034879 GTGGGCGTGTGGAGATGTG 61.035 63.158 0.00 0.00 0.00 3.21
10 11 2.347490 GTGGGCGTGTGGAGATGT 59.653 61.111 0.00 0.00 0.00 3.06
11 12 2.436646 GGTGGGCGTGTGGAGATG 60.437 66.667 0.00 0.00 0.00 2.90
12 13 4.082523 CGGTGGGCGTGTGGAGAT 62.083 66.667 0.00 0.00 0.00 2.75
17 18 4.735132 ATCGTCGGTGGGCGTGTG 62.735 66.667 0.00 0.00 0.00 3.82
18 19 4.735132 CATCGTCGGTGGGCGTGT 62.735 66.667 0.00 0.00 0.00 4.49
21 22 4.201679 TAGCATCGTCGGTGGGCG 62.202 66.667 7.76 0.00 0.00 6.13
22 23 2.279517 CTAGCATCGTCGGTGGGC 60.280 66.667 7.76 0.00 0.00 5.36
23 24 1.065928 GTCTAGCATCGTCGGTGGG 59.934 63.158 7.76 0.00 0.00 4.61
24 25 0.525668 GTGTCTAGCATCGTCGGTGG 60.526 60.000 7.76 0.00 0.00 4.61
25 26 0.170339 TGTGTCTAGCATCGTCGGTG 59.830 55.000 0.00 0.00 0.00 4.94
26 27 0.170561 GTGTGTCTAGCATCGTCGGT 59.829 55.000 0.00 0.00 0.00 4.69
27 28 0.525668 GGTGTGTCTAGCATCGTCGG 60.526 60.000 0.00 0.00 0.00 4.79
28 29 0.170339 TGGTGTGTCTAGCATCGTCG 59.830 55.000 0.00 0.00 0.00 5.12
29 30 2.464865 GATGGTGTGTCTAGCATCGTC 58.535 52.381 0.00 0.00 43.17 4.20
30 31 2.586258 GATGGTGTGTCTAGCATCGT 57.414 50.000 0.00 0.00 43.17 3.73
32 33 1.539065 CCCGATGGTGTGTCTAGCATC 60.539 57.143 7.64 7.64 46.66 3.91
33 34 0.465705 CCCGATGGTGTGTCTAGCAT 59.534 55.000 0.00 0.00 41.12 3.79
34 35 1.613317 CCCCGATGGTGTGTCTAGCA 61.613 60.000 0.00 0.00 0.00 3.49
35 36 1.144057 CCCCGATGGTGTGTCTAGC 59.856 63.158 0.00 0.00 0.00 3.42
36 37 1.144057 GCCCCGATGGTGTGTCTAG 59.856 63.158 0.00 0.00 36.04 2.43
37 38 2.717044 CGCCCCGATGGTGTGTCTA 61.717 63.158 0.00 0.00 39.95 2.59
38 39 4.082523 CGCCCCGATGGTGTGTCT 62.083 66.667 0.00 0.00 39.95 3.41
57 58 3.862991 GTTCTCCCCGCCTAGCCC 61.863 72.222 0.00 0.00 0.00 5.19
58 59 3.862991 GGTTCTCCCCGCCTAGCC 61.863 72.222 0.00 0.00 0.00 3.93
59 60 1.047034 TAAGGTTCTCCCCGCCTAGC 61.047 60.000 0.00 0.00 31.43 3.42
60 61 1.718280 ATAAGGTTCTCCCCGCCTAG 58.282 55.000 0.00 0.00 31.43 3.02
61 62 2.044758 GAATAAGGTTCTCCCCGCCTA 58.955 52.381 0.00 0.00 31.43 3.93
62 63 0.837940 GAATAAGGTTCTCCCCGCCT 59.162 55.000 0.00 0.00 0.00 5.52
63 64 0.837940 AGAATAAGGTTCTCCCCGCC 59.162 55.000 0.00 0.00 0.00 6.13
64 65 3.579151 AGATAGAATAAGGTTCTCCCCGC 59.421 47.826 0.00 0.00 0.00 6.13
65 66 5.304614 TGAAGATAGAATAAGGTTCTCCCCG 59.695 44.000 0.00 0.00 0.00 5.73
66 67 6.239743 CCTGAAGATAGAATAAGGTTCTCCCC 60.240 46.154 0.00 0.00 0.00 4.81
67 68 6.239743 CCCTGAAGATAGAATAAGGTTCTCCC 60.240 46.154 0.00 0.00 0.00 4.30
68 69 6.555360 TCCCTGAAGATAGAATAAGGTTCTCC 59.445 42.308 0.00 0.00 0.00 3.71
69 70 7.604657 TCCCTGAAGATAGAATAAGGTTCTC 57.395 40.000 0.00 0.00 0.00 2.87
70 71 6.042666 GCTCCCTGAAGATAGAATAAGGTTCT 59.957 42.308 0.00 0.00 0.00 3.01
71 72 6.227522 GCTCCCTGAAGATAGAATAAGGTTC 58.772 44.000 0.00 0.00 0.00 3.62
72 73 5.072464 GGCTCCCTGAAGATAGAATAAGGTT 59.928 44.000 0.00 0.00 0.00 3.50
73 74 4.595350 GGCTCCCTGAAGATAGAATAAGGT 59.405 45.833 0.00 0.00 0.00 3.50
74 75 4.322349 CGGCTCCCTGAAGATAGAATAAGG 60.322 50.000 0.00 0.00 0.00 2.69
75 76 4.282195 ACGGCTCCCTGAAGATAGAATAAG 59.718 45.833 0.00 0.00 0.00 1.73
76 77 4.223953 ACGGCTCCCTGAAGATAGAATAA 58.776 43.478 0.00 0.00 0.00 1.40
77 78 3.827302 GACGGCTCCCTGAAGATAGAATA 59.173 47.826 0.00 0.00 0.00 1.75
78 79 2.630580 GACGGCTCCCTGAAGATAGAAT 59.369 50.000 0.00 0.00 0.00 2.40
79 80 2.032620 GACGGCTCCCTGAAGATAGAA 58.967 52.381 0.00 0.00 0.00 2.10
80 81 1.693627 GACGGCTCCCTGAAGATAGA 58.306 55.000 0.00 0.00 0.00 1.98
81 82 0.312416 CGACGGCTCCCTGAAGATAG 59.688 60.000 0.00 0.00 0.00 2.08
82 83 1.735376 GCGACGGCTCCCTGAAGATA 61.735 60.000 0.00 0.00 35.83 1.98
83 84 3.082579 GCGACGGCTCCCTGAAGAT 62.083 63.158 0.00 0.00 35.83 2.40
84 85 3.760035 GCGACGGCTCCCTGAAGA 61.760 66.667 0.00 0.00 35.83 2.87
85 86 4.821589 GGCGACGGCTCCCTGAAG 62.822 72.222 15.00 0.00 39.81 3.02
97 98 2.202453 GGAAGACGAGACGGCGAC 60.202 66.667 16.62 7.87 41.28 5.19
98 99 2.359602 AGGAAGACGAGACGGCGA 60.360 61.111 16.62 0.00 41.28 5.54
99 100 2.202492 CAGGAAGACGAGACGGCG 60.202 66.667 4.80 4.80 41.28 6.46
100 101 1.137825 CTCAGGAAGACGAGACGGC 59.862 63.158 0.00 0.00 33.59 5.68
101 102 1.137825 GCTCAGGAAGACGAGACGG 59.862 63.158 0.00 0.00 0.00 4.79
102 103 0.179176 CTGCTCAGGAAGACGAGACG 60.179 60.000 0.00 0.00 0.00 4.18
103 104 3.712020 CTGCTCAGGAAGACGAGAC 57.288 57.895 0.00 0.00 0.00 3.36
114 115 0.109342 AGGGTTTGTGTCCTGCTCAG 59.891 55.000 0.00 0.00 31.11 3.35
115 116 1.429930 TAGGGTTTGTGTCCTGCTCA 58.570 50.000 0.00 0.00 34.75 4.26
116 117 2.152016 GTTAGGGTTTGTGTCCTGCTC 58.848 52.381 0.00 0.00 34.75 4.26
117 118 1.493022 TGTTAGGGTTTGTGTCCTGCT 59.507 47.619 0.00 0.00 34.75 4.24
118 119 1.975660 TGTTAGGGTTTGTGTCCTGC 58.024 50.000 0.00 0.00 34.75 4.85
119 120 4.993029 TTTTGTTAGGGTTTGTGTCCTG 57.007 40.909 0.00 0.00 34.75 3.86
120 121 5.239963 CGTATTTTGTTAGGGTTTGTGTCCT 59.760 40.000 0.00 0.00 37.18 3.85
121 122 5.239087 TCGTATTTTGTTAGGGTTTGTGTCC 59.761 40.000 0.00 0.00 0.00 4.02
122 123 6.303021 TCGTATTTTGTTAGGGTTTGTGTC 57.697 37.500 0.00 0.00 0.00 3.67
123 124 6.696441 TTCGTATTTTGTTAGGGTTTGTGT 57.304 33.333 0.00 0.00 0.00 3.72
124 125 7.988904 TTTTCGTATTTTGTTAGGGTTTGTG 57.011 32.000 0.00 0.00 0.00 3.33
146 147 4.222810 AGGGCTCTGTTTTCAGTTGTTTTT 59.777 37.500 0.00 0.00 46.98 1.94
147 148 3.769300 AGGGCTCTGTTTTCAGTTGTTTT 59.231 39.130 0.00 0.00 46.98 2.43
148 149 3.365472 AGGGCTCTGTTTTCAGTTGTTT 58.635 40.909 0.00 0.00 46.98 2.83
149 150 2.952310 GAGGGCTCTGTTTTCAGTTGTT 59.048 45.455 0.00 0.00 46.98 2.83
150 151 2.173569 AGAGGGCTCTGTTTTCAGTTGT 59.826 45.455 0.00 0.00 46.98 3.32
151 152 2.810852 GAGAGGGCTCTGTTTTCAGTTG 59.189 50.000 0.00 0.00 46.98 3.16
152 153 2.548920 CGAGAGGGCTCTGTTTTCAGTT 60.549 50.000 0.00 0.00 46.98 3.16
153 154 1.001406 CGAGAGGGCTCTGTTTTCAGT 59.999 52.381 0.00 0.00 46.98 3.41
155 156 1.000955 GACGAGAGGGCTCTGTTTTCA 59.999 52.381 0.00 0.00 40.61 2.69
156 157 1.715993 GACGAGAGGGCTCTGTTTTC 58.284 55.000 0.00 0.00 40.61 2.29
157 158 0.038159 CGACGAGAGGGCTCTGTTTT 60.038 55.000 0.00 0.00 40.61 2.43
158 159 0.894184 TCGACGAGAGGGCTCTGTTT 60.894 55.000 0.00 0.00 40.61 2.83
159 160 1.303398 TCGACGAGAGGGCTCTGTT 60.303 57.895 0.00 0.00 40.61 3.16
160 161 2.041686 GTCGACGAGAGGGCTCTGT 61.042 63.158 0.00 0.00 40.61 3.41
161 162 1.587043 TTGTCGACGAGAGGGCTCTG 61.587 60.000 11.62 0.00 40.61 3.35
162 163 1.303398 TTGTCGACGAGAGGGCTCT 60.303 57.895 11.62 0.00 43.78 4.09
163 164 1.137825 CTTGTCGACGAGAGGGCTC 59.862 63.158 25.98 0.00 37.81 4.70
164 165 2.344203 CCTTGTCGACGAGAGGGCT 61.344 63.158 30.60 0.00 0.00 5.19
165 166 2.182030 CCTTGTCGACGAGAGGGC 59.818 66.667 30.60 0.00 0.00 5.19
166 167 2.885861 CCCTTGTCGACGAGAGGG 59.114 66.667 30.60 28.56 42.66 4.30
167 168 2.182030 GCCCTTGTCGACGAGAGG 59.818 66.667 30.60 27.37 0.00 3.69
168 169 2.182030 GGCCCTTGTCGACGAGAG 59.818 66.667 30.60 20.86 0.00 3.20
169 170 3.744719 CGGCCCTTGTCGACGAGA 61.745 66.667 30.60 9.87 43.95 4.04
170 171 3.685214 CTCGGCCCTTGTCGACGAG 62.685 68.421 23.70 23.70 45.07 4.18
171 172 3.744719 CTCGGCCCTTGTCGACGA 61.745 66.667 11.62 8.40 45.07 4.20
172 173 2.938539 GATCTCGGCCCTTGTCGACG 62.939 65.000 11.62 0.00 45.07 5.12
173 174 1.227002 GATCTCGGCCCTTGTCGAC 60.227 63.158 9.11 9.11 45.07 4.20
175 176 2.107141 GGATCTCGGCCCTTGTCG 59.893 66.667 0.00 0.00 42.14 4.35
176 177 1.153349 GTGGATCTCGGCCCTTGTC 60.153 63.158 0.00 0.00 0.00 3.18
177 178 2.670148 GGTGGATCTCGGCCCTTGT 61.670 63.158 0.00 0.00 0.00 3.16
178 179 2.190578 GGTGGATCTCGGCCCTTG 59.809 66.667 0.00 0.00 0.00 3.61
179 180 2.285368 TGGTGGATCTCGGCCCTT 60.285 61.111 0.00 0.00 0.00 3.95
180 181 3.083997 GTGGTGGATCTCGGCCCT 61.084 66.667 0.00 0.00 0.00 5.19
181 182 4.530857 CGTGGTGGATCTCGGCCC 62.531 72.222 0.00 0.00 0.00 5.80
184 185 4.873129 CGGCGTGGTGGATCTCGG 62.873 72.222 0.00 0.00 0.00 4.63
188 189 4.856801 ATGGCGGCGTGGTGGATC 62.857 66.667 9.37 0.00 0.00 3.36
199 200 2.203209 GTCTTAGGGCCATGGCGG 60.203 66.667 29.90 16.46 43.06 6.13
200 201 2.203209 GGTCTTAGGGCCATGGCG 60.203 66.667 29.90 16.10 43.06 5.69
201 202 1.453928 GTGGTCTTAGGGCCATGGC 60.454 63.158 29.47 29.47 37.09 4.40
202 203 1.153168 CGTGGTCTTAGGGCCATGG 60.153 63.158 9.80 7.63 37.94 3.66
203 204 1.153168 CCGTGGTCTTAGGGCCATG 60.153 63.158 10.67 10.67 40.49 3.66
204 205 2.375345 CCCGTGGTCTTAGGGCCAT 61.375 63.158 6.18 0.00 38.51 4.40
205 206 3.006728 CCCGTGGTCTTAGGGCCA 61.007 66.667 6.18 0.00 38.51 5.36
206 207 2.686106 TCCCGTGGTCTTAGGGCC 60.686 66.667 0.00 0.00 44.70 5.80
207 208 1.677637 CTCTCCCGTGGTCTTAGGGC 61.678 65.000 0.00 0.00 44.70 5.19
208 209 1.043673 CCTCTCCCGTGGTCTTAGGG 61.044 65.000 0.00 0.00 46.40 3.53
209 210 0.033405 TCCTCTCCCGTGGTCTTAGG 60.033 60.000 0.00 0.00 0.00 2.69
210 211 1.394618 CTCCTCTCCCGTGGTCTTAG 58.605 60.000 0.00 0.00 0.00 2.18
211 212 0.033405 CCTCCTCTCCCGTGGTCTTA 60.033 60.000 0.00 0.00 0.00 2.10
212 213 1.305381 CCTCCTCTCCCGTGGTCTT 60.305 63.158 0.00 0.00 0.00 3.01
213 214 2.360980 CCTCCTCTCCCGTGGTCT 59.639 66.667 0.00 0.00 0.00 3.85
214 215 3.462678 GCCTCCTCTCCCGTGGTC 61.463 72.222 0.00 0.00 0.00 4.02
221 222 4.816984 TCGGTCCGCCTCCTCTCC 62.817 72.222 6.34 0.00 0.00 3.71
222 223 2.519780 ATCGGTCCGCCTCCTCTC 60.520 66.667 6.34 0.00 0.00 3.20
223 224 2.835431 CATCGGTCCGCCTCCTCT 60.835 66.667 6.34 0.00 0.00 3.69
224 225 3.917760 CCATCGGTCCGCCTCCTC 61.918 72.222 6.34 0.00 0.00 3.71
249 250 3.477346 GTTCCCCTACCTCCCGCC 61.477 72.222 0.00 0.00 0.00 6.13
250 251 3.477346 GGTTCCCCTACCTCCCGC 61.477 72.222 0.00 0.00 35.23 6.13
251 252 2.767073 GGGTTCCCCTACCTCCCG 60.767 72.222 0.00 0.00 41.34 5.14
260 261 3.561528 CCAAGAAAAGTCTAGGGTTCCCC 60.562 52.174 4.02 0.00 37.19 4.81
261 262 3.561528 CCCAAGAAAAGTCTAGGGTTCCC 60.562 52.174 0.00 0.00 32.16 3.97
262 263 3.561528 CCCCAAGAAAAGTCTAGGGTTCC 60.562 52.174 0.00 0.00 40.51 3.62
263 264 3.329814 TCCCCAAGAAAAGTCTAGGGTTC 59.670 47.826 10.17 0.00 43.64 3.62
264 265 3.332968 TCCCCAAGAAAAGTCTAGGGTT 58.667 45.455 10.17 0.00 43.64 4.11
265 266 2.999928 TCCCCAAGAAAAGTCTAGGGT 58.000 47.619 10.17 0.00 43.64 4.34
266 267 3.587506 TCTTCCCCAAGAAAAGTCTAGGG 59.412 47.826 5.70 5.70 44.18 3.53
267 268 4.323868 CCTCTTCCCCAAGAAAAGTCTAGG 60.324 50.000 0.00 0.00 38.23 3.02
268 269 4.837972 CCTCTTCCCCAAGAAAAGTCTAG 58.162 47.826 0.00 0.00 38.23 2.43
269 270 3.009143 GCCTCTTCCCCAAGAAAAGTCTA 59.991 47.826 0.00 0.00 38.23 2.59
270 271 2.224892 GCCTCTTCCCCAAGAAAAGTCT 60.225 50.000 0.00 0.00 38.23 3.24
271 272 2.163509 GCCTCTTCCCCAAGAAAAGTC 58.836 52.381 0.00 0.00 38.23 3.01
272 273 1.783365 AGCCTCTTCCCCAAGAAAAGT 59.217 47.619 0.00 0.00 38.23 2.66
273 274 2.165998 CAGCCTCTTCCCCAAGAAAAG 58.834 52.381 0.00 0.00 38.23 2.27
274 275 1.499007 ACAGCCTCTTCCCCAAGAAAA 59.501 47.619 0.00 0.00 38.23 2.29
275 276 1.149101 ACAGCCTCTTCCCCAAGAAA 58.851 50.000 0.00 0.00 38.23 2.52
276 277 0.401738 CACAGCCTCTTCCCCAAGAA 59.598 55.000 0.00 0.00 38.23 2.52
277 278 0.768221 ACACAGCCTCTTCCCCAAGA 60.768 55.000 0.00 0.00 37.11 3.02
278 279 0.111253 AACACAGCCTCTTCCCCAAG 59.889 55.000 0.00 0.00 0.00 3.61
279 280 0.110486 GAACACAGCCTCTTCCCCAA 59.890 55.000 0.00 0.00 0.00 4.12
280 281 1.761174 GAACACAGCCTCTTCCCCA 59.239 57.895 0.00 0.00 0.00 4.96
281 282 1.376037 CGAACACAGCCTCTTCCCC 60.376 63.158 0.00 0.00 0.00 4.81
282 283 1.376037 CCGAACACAGCCTCTTCCC 60.376 63.158 0.00 0.00 0.00 3.97
283 284 1.376037 CCCGAACACAGCCTCTTCC 60.376 63.158 0.00 0.00 0.00 3.46
284 285 0.670854 GACCCGAACACAGCCTCTTC 60.671 60.000 0.00 0.00 0.00 2.87
285 286 1.371558 GACCCGAACACAGCCTCTT 59.628 57.895 0.00 0.00 0.00 2.85
286 287 2.584391 GGACCCGAACACAGCCTCT 61.584 63.158 0.00 0.00 0.00 3.69
287 288 2.047179 GGACCCGAACACAGCCTC 60.047 66.667 0.00 0.00 0.00 4.70
288 289 3.637273 GGGACCCGAACACAGCCT 61.637 66.667 0.00 0.00 0.00 4.58
289 290 3.485346 TTGGGACCCGAACACAGCC 62.485 63.158 5.91 0.00 0.00 4.85
290 291 1.966451 CTTGGGACCCGAACACAGC 60.966 63.158 5.91 0.00 0.00 4.40
291 292 0.682852 TACTTGGGACCCGAACACAG 59.317 55.000 5.91 0.00 0.00 3.66
292 293 0.393820 GTACTTGGGACCCGAACACA 59.606 55.000 5.91 0.00 0.00 3.72
293 294 0.393820 TGTACTTGGGACCCGAACAC 59.606 55.000 5.91 5.30 0.00 3.32
294 295 0.682852 CTGTACTTGGGACCCGAACA 59.317 55.000 5.91 5.57 0.00 3.18
295 296 0.672711 GCTGTACTTGGGACCCGAAC 60.673 60.000 5.91 0.40 0.00 3.95
296 297 1.122632 TGCTGTACTTGGGACCCGAA 61.123 55.000 5.91 0.57 0.00 4.30
297 298 1.534476 TGCTGTACTTGGGACCCGA 60.534 57.895 5.91 2.38 0.00 5.14
298 299 1.079127 CTGCTGTACTTGGGACCCG 60.079 63.158 5.91 0.00 0.00 5.28
299 300 0.250513 CTCTGCTGTACTTGGGACCC 59.749 60.000 2.45 2.45 0.00 4.46
300 301 1.267121 TCTCTGCTGTACTTGGGACC 58.733 55.000 0.00 0.00 0.00 4.46
301 302 2.300437 ACTTCTCTGCTGTACTTGGGAC 59.700 50.000 0.00 0.00 0.00 4.46
302 303 2.300152 CACTTCTCTGCTGTACTTGGGA 59.700 50.000 0.00 0.00 0.00 4.37
303 304 2.613977 CCACTTCTCTGCTGTACTTGGG 60.614 54.545 0.00 0.00 0.00 4.12
304 305 2.037772 ACCACTTCTCTGCTGTACTTGG 59.962 50.000 0.00 0.00 0.00 3.61
305 306 3.006323 AGACCACTTCTCTGCTGTACTTG 59.994 47.826 0.00 0.00 0.00 3.16
306 307 3.235200 AGACCACTTCTCTGCTGTACTT 58.765 45.455 0.00 0.00 0.00 2.24
307 308 2.883026 AGACCACTTCTCTGCTGTACT 58.117 47.619 0.00 0.00 0.00 2.73
308 309 4.993029 ATAGACCACTTCTCTGCTGTAC 57.007 45.455 0.00 0.00 35.55 2.90
309 310 4.772624 ACAATAGACCACTTCTCTGCTGTA 59.227 41.667 0.00 0.00 35.55 2.74
310 311 3.580458 ACAATAGACCACTTCTCTGCTGT 59.420 43.478 0.00 0.00 35.55 4.40
311 312 4.199432 ACAATAGACCACTTCTCTGCTG 57.801 45.455 0.00 0.00 35.55 4.41
312 313 4.573900 CAACAATAGACCACTTCTCTGCT 58.426 43.478 0.00 0.00 35.55 4.24
313 314 3.126000 GCAACAATAGACCACTTCTCTGC 59.874 47.826 0.00 0.00 35.55 4.26
314 315 4.318332 TGCAACAATAGACCACTTCTCTG 58.682 43.478 0.00 0.00 35.55 3.35
315 316 4.623932 TGCAACAATAGACCACTTCTCT 57.376 40.909 0.00 0.00 35.55 3.10
316 317 5.689383 TTTGCAACAATAGACCACTTCTC 57.311 39.130 0.00 0.00 35.55 2.87
317 318 6.463995 TTTTTGCAACAATAGACCACTTCT 57.536 33.333 0.00 0.00 38.51 2.85
318 319 6.346838 GCATTTTTGCAACAATAGACCACTTC 60.347 38.462 10.36 0.00 34.41 3.01
319 320 5.466393 GCATTTTTGCAACAATAGACCACTT 59.534 36.000 10.36 0.00 34.41 3.16
320 321 4.990426 GCATTTTTGCAACAATAGACCACT 59.010 37.500 10.36 0.00 34.41 4.00
321 322 4.152223 GGCATTTTTGCAACAATAGACCAC 59.848 41.667 10.36 0.00 36.33 4.16
322 323 4.202295 TGGCATTTTTGCAACAATAGACCA 60.202 37.500 16.79 16.79 36.33 4.02
323 324 4.314121 TGGCATTTTTGCAACAATAGACC 58.686 39.130 10.36 12.19 36.33 3.85
324 325 7.331687 AGTTATGGCATTTTTGCAACAATAGAC 59.668 33.333 10.36 8.19 36.33 2.59
325 326 7.385267 AGTTATGGCATTTTTGCAACAATAGA 58.615 30.769 10.36 0.00 36.33 1.98
326 327 7.599630 AGTTATGGCATTTTTGCAACAATAG 57.400 32.000 10.36 6.88 36.33 1.73
327 328 7.976135 AAGTTATGGCATTTTTGCAACAATA 57.024 28.000 10.36 0.00 36.33 1.90
328 329 6.880942 AAGTTATGGCATTTTTGCAACAAT 57.119 29.167 4.78 4.98 36.33 2.71
329 330 6.203723 GGTAAGTTATGGCATTTTTGCAACAA 59.796 34.615 4.78 0.00 36.33 2.83
330 331 5.698545 GGTAAGTTATGGCATTTTTGCAACA 59.301 36.000 4.78 0.00 36.33 3.33
331 332 5.931724 AGGTAAGTTATGGCATTTTTGCAAC 59.068 36.000 4.78 2.60 36.33 4.17
332 333 6.107901 AGGTAAGTTATGGCATTTTTGCAA 57.892 33.333 4.78 0.00 36.33 4.08
333 334 5.244851 TGAGGTAAGTTATGGCATTTTTGCA 59.755 36.000 4.78 0.00 36.33 4.08
334 335 5.576774 GTGAGGTAAGTTATGGCATTTTTGC 59.423 40.000 4.78 1.78 0.00 3.68
335 336 6.686630 TGTGAGGTAAGTTATGGCATTTTTG 58.313 36.000 4.78 0.00 0.00 2.44
336 337 6.572314 GCTGTGAGGTAAGTTATGGCATTTTT 60.572 38.462 4.78 0.61 0.00 1.94
337 338 5.105756 GCTGTGAGGTAAGTTATGGCATTTT 60.106 40.000 4.78 0.99 0.00 1.82
338 339 4.399303 GCTGTGAGGTAAGTTATGGCATTT 59.601 41.667 4.78 0.00 0.00 2.32
339 340 3.947834 GCTGTGAGGTAAGTTATGGCATT 59.052 43.478 4.78 0.00 0.00 3.56
340 341 3.200825 AGCTGTGAGGTAAGTTATGGCAT 59.799 43.478 4.88 4.88 0.00 4.40
341 342 2.571653 AGCTGTGAGGTAAGTTATGGCA 59.428 45.455 0.00 0.00 0.00 4.92
342 343 2.939103 CAGCTGTGAGGTAAGTTATGGC 59.061 50.000 5.25 0.00 0.00 4.40
343 344 4.207891 ACAGCTGTGAGGTAAGTTATGG 57.792 45.455 20.97 0.00 0.00 2.74
344 345 6.631016 TCTAACAGCTGTGAGGTAAGTTATG 58.369 40.000 27.81 2.65 0.00 1.90
345 346 6.852420 TCTAACAGCTGTGAGGTAAGTTAT 57.148 37.500 27.81 7.85 0.00 1.89
346 347 6.631016 CATCTAACAGCTGTGAGGTAAGTTA 58.369 40.000 27.81 9.85 0.00 2.24
347 348 5.482908 CATCTAACAGCTGTGAGGTAAGTT 58.517 41.667 27.81 9.08 0.00 2.66
348 349 4.621747 GCATCTAACAGCTGTGAGGTAAGT 60.622 45.833 27.81 9.80 0.00 2.24
349 350 3.868077 GCATCTAACAGCTGTGAGGTAAG 59.132 47.826 27.81 13.45 0.00 2.34
350 351 3.260632 TGCATCTAACAGCTGTGAGGTAA 59.739 43.478 27.81 12.36 0.00 2.85
351 352 2.831526 TGCATCTAACAGCTGTGAGGTA 59.168 45.455 27.81 16.65 0.00 3.08
352 353 1.625315 TGCATCTAACAGCTGTGAGGT 59.375 47.619 27.81 20.72 0.00 3.85
353 354 2.093816 TCTGCATCTAACAGCTGTGAGG 60.094 50.000 27.81 20.14 35.04 3.86
354 355 3.242549 TCTGCATCTAACAGCTGTGAG 57.757 47.619 23.63 23.63 35.04 3.51
355 356 3.900966 ATCTGCATCTAACAGCTGTGA 57.099 42.857 22.49 15.00 35.04 3.58
356 357 7.148457 CCATTATATCTGCATCTAACAGCTGTG 60.148 40.741 22.49 9.21 35.04 3.66
357 358 6.877855 CCATTATATCTGCATCTAACAGCTGT 59.122 38.462 15.25 15.25 35.04 4.40
358 359 6.877855 ACCATTATATCTGCATCTAACAGCTG 59.122 38.462 13.48 13.48 35.04 4.24
359 360 7.013823 ACCATTATATCTGCATCTAACAGCT 57.986 36.000 0.00 0.00 35.04 4.24
360 361 6.875726 TGACCATTATATCTGCATCTAACAGC 59.124 38.462 0.00 0.00 35.04 4.40
361 362 8.309656 TCTGACCATTATATCTGCATCTAACAG 58.690 37.037 0.00 0.00 36.44 3.16
362 363 8.193953 TCTGACCATTATATCTGCATCTAACA 57.806 34.615 0.00 0.00 0.00 2.41
363 364 9.494271 TTTCTGACCATTATATCTGCATCTAAC 57.506 33.333 0.00 0.00 0.00 2.34
365 366 9.662947 CATTTCTGACCATTATATCTGCATCTA 57.337 33.333 0.00 0.00 0.00 1.98
366 367 8.380867 TCATTTCTGACCATTATATCTGCATCT 58.619 33.333 0.00 0.00 0.00 2.90
367 368 8.449397 GTCATTTCTGACCATTATATCTGCATC 58.551 37.037 0.00 0.00 45.06 3.91
368 369 8.332996 GTCATTTCTGACCATTATATCTGCAT 57.667 34.615 0.00 0.00 45.06 3.96
369 370 7.734924 GTCATTTCTGACCATTATATCTGCA 57.265 36.000 0.00 0.00 45.06 4.41
382 383 5.061064 GTGTCTGTCATACGTCATTTCTGAC 59.939 44.000 0.00 1.37 46.89 3.51
383 384 5.161358 GTGTCTGTCATACGTCATTTCTGA 58.839 41.667 0.00 0.00 0.00 3.27
384 385 4.923281 TGTGTCTGTCATACGTCATTTCTG 59.077 41.667 0.00 0.00 0.00 3.02
385 386 5.134202 TGTGTCTGTCATACGTCATTTCT 57.866 39.130 0.00 0.00 0.00 2.52
386 387 5.576774 TGATGTGTCTGTCATACGTCATTTC 59.423 40.000 0.00 0.00 35.93 2.17
387 388 5.478407 TGATGTGTCTGTCATACGTCATTT 58.522 37.500 0.00 0.00 35.93 2.32
388 389 5.072040 TGATGTGTCTGTCATACGTCATT 57.928 39.130 0.00 0.00 35.93 2.57
389 390 4.718940 TGATGTGTCTGTCATACGTCAT 57.281 40.909 0.00 0.00 35.93 3.06
390 391 4.157656 TGATGATGTGTCTGTCATACGTCA 59.842 41.667 0.00 0.00 42.51 4.35
391 392 4.672409 TGATGATGTGTCTGTCATACGTC 58.328 43.478 0.00 0.00 35.33 4.34
392 393 4.718940 TGATGATGTGTCTGTCATACGT 57.281 40.909 0.00 0.00 35.33 3.57
393 394 5.174579 GTGATGATGATGTGTCTGTCATACG 59.825 44.000 0.00 0.00 35.33 3.06
394 395 5.464722 GGTGATGATGATGTGTCTGTCATAC 59.535 44.000 0.00 0.00 35.33 2.39
395 396 5.129155 TGGTGATGATGATGTGTCTGTCATA 59.871 40.000 0.00 0.00 35.33 2.15
396 397 4.080751 TGGTGATGATGATGTGTCTGTCAT 60.081 41.667 0.00 0.00 37.76 3.06
397 398 3.261390 TGGTGATGATGATGTGTCTGTCA 59.739 43.478 0.00 0.00 0.00 3.58
398 399 3.865446 TGGTGATGATGATGTGTCTGTC 58.135 45.455 0.00 0.00 0.00 3.51
399 400 3.986996 TGGTGATGATGATGTGTCTGT 57.013 42.857 0.00 0.00 0.00 3.41
400 401 4.094442 CAGTTGGTGATGATGATGTGTCTG 59.906 45.833 0.00 0.00 0.00 3.51
401 402 4.259356 CAGTTGGTGATGATGATGTGTCT 58.741 43.478 0.00 0.00 0.00 3.41
402 403 3.376234 CCAGTTGGTGATGATGATGTGTC 59.624 47.826 0.00 0.00 0.00 3.67
403 404 3.349927 CCAGTTGGTGATGATGATGTGT 58.650 45.455 0.00 0.00 0.00 3.72
404 405 2.686405 CCCAGTTGGTGATGATGATGTG 59.314 50.000 0.00 0.00 0.00 3.21
405 406 3.008835 CCCAGTTGGTGATGATGATGT 57.991 47.619 0.00 0.00 0.00 3.06
417 418 7.848128 TCTACTTCTATAAAAGACCCAGTTGG 58.152 38.462 0.00 0.00 41.37 3.77
418 419 8.750298 TCTCTACTTCTATAAAAGACCCAGTTG 58.250 37.037 0.00 0.00 32.51 3.16
419 420 8.896722 TCTCTACTTCTATAAAAGACCCAGTT 57.103 34.615 0.00 0.00 32.51 3.16
420 421 8.896722 TTCTCTACTTCTATAAAAGACCCAGT 57.103 34.615 0.00 0.00 32.51 4.00
435 436 9.410556 GCTTCAGATCATAGATTTCTCTACTTC 57.589 37.037 0.00 0.00 36.81 3.01
436 437 8.922237 TGCTTCAGATCATAGATTTCTCTACTT 58.078 33.333 0.00 0.00 36.81 2.24
437 438 8.476064 TGCTTCAGATCATAGATTTCTCTACT 57.524 34.615 0.00 0.00 36.81 2.57
438 439 9.709495 AATGCTTCAGATCATAGATTTCTCTAC 57.291 33.333 0.00 0.00 36.81 2.59
439 440 9.708092 CAATGCTTCAGATCATAGATTTCTCTA 57.292 33.333 0.00 0.00 38.34 2.43
440 441 8.212312 ACAATGCTTCAGATCATAGATTTCTCT 58.788 33.333 0.00 0.00 35.39 3.10
441 442 8.380743 ACAATGCTTCAGATCATAGATTTCTC 57.619 34.615 0.00 0.00 0.00 2.87
442 443 7.444792 GGACAATGCTTCAGATCATAGATTTCT 59.555 37.037 0.00 0.00 0.00 2.52
443 444 7.444792 AGGACAATGCTTCAGATCATAGATTTC 59.555 37.037 0.00 0.00 0.00 2.17
444 445 7.288560 AGGACAATGCTTCAGATCATAGATTT 58.711 34.615 0.00 0.00 0.00 2.17
456 457 9.638239 GACAAAAATTATAAGGACAATGCTTCA 57.362 29.630 0.00 0.00 0.00 3.02
516 518 4.580528 CTTGCTTGTGTGTTTGCATTTTC 58.419 39.130 0.00 0.00 35.27 2.29
517 519 3.181508 GCTTGCTTGTGTGTTTGCATTTT 60.182 39.130 0.00 0.00 35.27 1.82
560 562 0.373024 GTCGACTCGTAGCTAGCGTT 59.627 55.000 8.70 0.00 0.00 4.84
570 572 1.740297 AGTGCTATCAGTCGACTCGT 58.260 50.000 16.96 9.79 0.00 4.18
577 579 2.561733 TGCGTGTAGTGCTATCAGTC 57.438 50.000 0.00 0.00 0.00 3.51
583 585 2.465860 ATTGGTTGCGTGTAGTGCTA 57.534 45.000 0.00 0.00 0.00 3.49
584 586 1.604604 AATTGGTTGCGTGTAGTGCT 58.395 45.000 0.00 0.00 0.00 4.40
591 593 3.868077 TGGAAAAGAAAATTGGTTGCGTG 59.132 39.130 0.00 0.00 0.00 5.34
606 608 4.570772 TGTCTCTGACGTTTTCTGGAAAAG 59.429 41.667 8.52 6.33 40.53 2.27
611 613 2.821546 TGTGTCTCTGACGTTTTCTGG 58.178 47.619 0.00 0.00 34.95 3.86
619 633 1.524355 CTGCTGTTTGTGTCTCTGACG 59.476 52.381 0.00 0.00 34.95 4.35
642 656 4.079748 GGGTTTGCGGCGTACGTG 62.080 66.667 17.90 11.06 46.52 4.49
672 686 1.068474 CCACTGCTGCGTACAACTAC 58.932 55.000 0.00 0.00 0.00 2.73
676 693 2.110006 TGCCACTGCTGCGTACAA 59.890 55.556 0.00 0.00 38.71 2.41
677 694 2.664851 GTGCCACTGCTGCGTACA 60.665 61.111 0.00 0.00 38.71 2.90
683 700 3.245948 GAAGCGTGTGCCACTGCTG 62.246 63.158 14.33 0.00 40.82 4.41
684 701 2.974698 GAAGCGTGTGCCACTGCT 60.975 61.111 8.96 8.96 42.37 4.24
685 702 4.030452 GGAAGCGTGTGCCACTGC 62.030 66.667 4.75 4.75 44.31 4.40
686 703 1.005037 TAGGAAGCGTGTGCCACTG 60.005 57.895 0.00 0.00 44.31 3.66
687 704 1.293498 CTAGGAAGCGTGTGCCACT 59.707 57.895 0.00 0.00 44.31 4.00
705 722 2.585247 GATGGACGTGTAGGGCGC 60.585 66.667 0.00 0.00 0.00 6.53
707 724 0.824759 AAGAGATGGACGTGTAGGGC 59.175 55.000 0.00 0.00 0.00 5.19
738 765 0.820871 GAGGACGCTGTCAAGGAGAT 59.179 55.000 10.14 0.00 33.68 2.75
745 772 2.117423 TGGAGGAGGACGCTGTCA 59.883 61.111 10.14 0.00 33.68 3.58
1170 1198 4.699522 AAACGCAGGGACGCCTCC 62.700 66.667 0.00 0.00 36.19 4.30
1449 1477 5.011533 GTGCATACTCTTCTGGACCATCTAT 59.988 44.000 0.00 0.00 0.00 1.98
1599 1627 2.875933 TGACAAAATGTGGACCGTTCTC 59.124 45.455 0.00 0.00 0.00 2.87
1607 1635 0.533085 TCGCGGTGACAAAATGTGGA 60.533 50.000 6.13 0.00 0.00 4.02
1613 1641 0.248296 GCAAGTTCGCGGTGACAAAA 60.248 50.000 6.13 0.00 0.00 2.44
1642 1670 2.359981 ATTGCACATGCTATCTGGCT 57.640 45.000 5.31 0.00 42.66 4.75
1675 1708 2.149803 TAGGTCGAGTTGCGTGGTGG 62.150 60.000 0.00 0.00 41.80 4.61
1840 1902 1.559368 CCATGCAAATCCACCTCCAA 58.441 50.000 0.00 0.00 0.00 3.53
1943 2005 2.625737 CGAAAGTCAGGATCATGTGCT 58.374 47.619 7.33 4.49 0.00 4.40
1973 2036 2.472861 GCGTGATATCACATCTTGGACG 59.527 50.000 30.15 16.75 46.75 4.79
1985 2048 2.668457 GGTGATGATTCGGCGTGATATC 59.332 50.000 6.85 8.24 0.00 1.63
1997 2060 1.417890 GGTCGGATGAGGGTGATGATT 59.582 52.381 0.00 0.00 0.00 2.57
1999 2062 1.391933 CGGTCGGATGAGGGTGATGA 61.392 60.000 0.00 0.00 0.00 2.92
2024 2087 5.215160 CCAGTTAACTACTTTACGACGTGT 58.785 41.667 11.56 2.45 33.85 4.49
2096 2159 2.540515 CATGCAGAACTACCTACGTGG 58.459 52.381 0.00 0.00 42.93 4.94
2144 2208 6.803154 AACTAGTGCATCTTTTAGGTGAAC 57.197 37.500 0.00 0.00 0.00 3.18
2150 2214 8.190888 AGAATCGAAACTAGTGCATCTTTTAG 57.809 34.615 0.00 0.00 0.00 1.85
2151 2215 8.443160 CAAGAATCGAAACTAGTGCATCTTTTA 58.557 33.333 0.00 0.00 0.00 1.52
2156 2220 4.870426 TCCAAGAATCGAAACTAGTGCATC 59.130 41.667 0.00 0.00 0.00 3.91
2163 2227 6.737254 GAACCAATCCAAGAATCGAAACTA 57.263 37.500 0.00 0.00 0.00 2.24
2224 2288 3.964031 ACATGTAAACCCTTGGCTGAAAA 59.036 39.130 0.00 0.00 0.00 2.29
2227 2291 2.969821 ACATGTAAACCCTTGGCTGA 57.030 45.000 0.00 0.00 0.00 4.26
2241 2305 9.185680 GGTGAATCTACCCTTTAAAATACATGT 57.814 33.333 2.69 2.69 34.56 3.21
2308 2372 9.771140 ACTCCCTCCGTTTCTATATATAAATCT 57.229 33.333 0.00 0.00 0.00 2.40
2309 2373 9.804758 CACTCCCTCCGTTTCTATATATAAATC 57.195 37.037 0.00 0.00 0.00 2.17
2310 2374 9.322769 ACACTCCCTCCGTTTCTATATATAAAT 57.677 33.333 0.00 0.00 0.00 1.40
2311 2375 8.716674 ACACTCCCTCCGTTTCTATATATAAA 57.283 34.615 0.00 0.00 0.00 1.40
2312 2376 7.120285 CGACACTCCCTCCGTTTCTATATATAA 59.880 40.741 0.00 0.00 0.00 0.98
2313 2377 6.596888 CGACACTCCCTCCGTTTCTATATATA 59.403 42.308 0.00 0.00 0.00 0.86
2314 2378 5.415077 CGACACTCCCTCCGTTTCTATATAT 59.585 44.000 0.00 0.00 0.00 0.86
2315 2379 4.758674 CGACACTCCCTCCGTTTCTATATA 59.241 45.833 0.00 0.00 0.00 0.86
2316 2380 3.568853 CGACACTCCCTCCGTTTCTATAT 59.431 47.826 0.00 0.00 0.00 0.86
2317 2381 2.947652 CGACACTCCCTCCGTTTCTATA 59.052 50.000 0.00 0.00 0.00 1.31
2318 2382 1.749634 CGACACTCCCTCCGTTTCTAT 59.250 52.381 0.00 0.00 0.00 1.98
2319 2383 1.171308 CGACACTCCCTCCGTTTCTA 58.829 55.000 0.00 0.00 0.00 2.10
2320 2384 1.533469 CCGACACTCCCTCCGTTTCT 61.533 60.000 0.00 0.00 0.00 2.52
2321 2385 1.080025 CCGACACTCCCTCCGTTTC 60.080 63.158 0.00 0.00 0.00 2.78
2322 2386 3.057337 CCGACACTCCCTCCGTTT 58.943 61.111 0.00 0.00 0.00 3.60
2323 2387 3.692406 GCCGACACTCCCTCCGTT 61.692 66.667 0.00 0.00 0.00 4.44
2324 2388 4.988716 TGCCGACACTCCCTCCGT 62.989 66.667 0.00 0.00 0.00 4.69
2325 2389 1.672854 TATTGCCGACACTCCCTCCG 61.673 60.000 0.00 0.00 0.00 4.63
2326 2390 0.105039 CTATTGCCGACACTCCCTCC 59.895 60.000 0.00 0.00 0.00 4.30
2327 2391 0.530870 GCTATTGCCGACACTCCCTC 60.531 60.000 0.00 0.00 0.00 4.30
2328 2392 0.978146 AGCTATTGCCGACACTCCCT 60.978 55.000 0.00 0.00 40.80 4.20
2329 2393 0.107654 AAGCTATTGCCGACACTCCC 60.108 55.000 0.00 0.00 40.80 4.30
2330 2394 1.134670 AGAAGCTATTGCCGACACTCC 60.135 52.381 0.00 0.00 40.80 3.85
2331 2395 2.159170 AGAGAAGCTATTGCCGACACTC 60.159 50.000 0.00 0.00 40.80 3.51
2332 2396 1.827969 AGAGAAGCTATTGCCGACACT 59.172 47.619 0.00 0.00 40.80 3.55
2333 2397 2.301577 AGAGAAGCTATTGCCGACAC 57.698 50.000 0.00 0.00 40.80 3.67
2334 2398 2.621338 CAAGAGAAGCTATTGCCGACA 58.379 47.619 0.00 0.00 40.80 4.35
2340 2404 5.618056 TGAACAAGCAAGAGAAGCTATTG 57.382 39.130 0.00 0.00 42.53 1.90
2341 2405 6.830873 AATGAACAAGCAAGAGAAGCTATT 57.169 33.333 0.00 0.00 42.53 1.73
2342 2406 7.928307 TTAATGAACAAGCAAGAGAAGCTAT 57.072 32.000 0.00 0.00 42.53 2.97
2343 2407 7.928307 ATTAATGAACAAGCAAGAGAAGCTA 57.072 32.000 0.00 0.00 42.53 3.32
2344 2408 6.830873 ATTAATGAACAAGCAAGAGAAGCT 57.169 33.333 0.00 0.00 45.97 3.74
2345 2409 7.880059 AAATTAATGAACAAGCAAGAGAAGC 57.120 32.000 0.00 0.00 0.00 3.86
2386 2450 9.227777 GGCTAAGGAAGTAACTTAATTCTCAAA 57.772 33.333 8.48 0.00 33.61 2.69
2387 2451 8.380099 TGGCTAAGGAAGTAACTTAATTCTCAA 58.620 33.333 8.48 0.00 33.61 3.02
2388 2452 7.822822 GTGGCTAAGGAAGTAACTTAATTCTCA 59.177 37.037 8.48 0.00 33.61 3.27
2389 2453 8.041919 AGTGGCTAAGGAAGTAACTTAATTCTC 58.958 37.037 8.48 0.97 33.61 2.87
2390 2454 7.919151 AGTGGCTAAGGAAGTAACTTAATTCT 58.081 34.615 8.48 0.00 33.61 2.40
2391 2455 8.563123 AAGTGGCTAAGGAAGTAACTTAATTC 57.437 34.615 1.11 1.11 33.70 2.17
2392 2456 9.445878 GTAAGTGGCTAAGGAAGTAACTTAATT 57.554 33.333 0.00 0.00 37.17 1.40
2393 2457 8.045507 GGTAAGTGGCTAAGGAAGTAACTTAAT 58.954 37.037 0.00 0.00 37.17 1.40
2394 2458 7.389232 GGTAAGTGGCTAAGGAAGTAACTTAA 58.611 38.462 0.00 0.00 37.17 1.85
2395 2459 6.350445 CGGTAAGTGGCTAAGGAAGTAACTTA 60.350 42.308 0.00 0.00 35.71 2.24
2396 2460 5.568223 CGGTAAGTGGCTAAGGAAGTAACTT 60.568 44.000 0.00 0.00 37.05 2.66
2397 2461 4.081807 CGGTAAGTGGCTAAGGAAGTAACT 60.082 45.833 0.00 0.00 0.00 2.24
2398 2462 4.179298 CGGTAAGTGGCTAAGGAAGTAAC 58.821 47.826 0.00 0.00 0.00 2.50
2399 2463 3.196254 CCGGTAAGTGGCTAAGGAAGTAA 59.804 47.826 0.00 0.00 0.00 2.24
2400 2464 2.762327 CCGGTAAGTGGCTAAGGAAGTA 59.238 50.000 0.00 0.00 0.00 2.24
2401 2465 1.553704 CCGGTAAGTGGCTAAGGAAGT 59.446 52.381 0.00 0.00 0.00 3.01
2402 2466 1.829222 TCCGGTAAGTGGCTAAGGAAG 59.171 52.381 0.00 0.00 0.00 3.46
2403 2467 1.941377 TCCGGTAAGTGGCTAAGGAA 58.059 50.000 0.00 0.00 0.00 3.36
2404 2468 1.760613 CATCCGGTAAGTGGCTAAGGA 59.239 52.381 0.00 0.00 0.00 3.36
2405 2469 1.760613 TCATCCGGTAAGTGGCTAAGG 59.239 52.381 0.00 0.00 0.00 2.69
2406 2470 3.536956 TTCATCCGGTAAGTGGCTAAG 57.463 47.619 0.00 0.00 0.00 2.18
2407 2471 3.985019 TTTCATCCGGTAAGTGGCTAA 57.015 42.857 0.00 0.00 0.00 3.09
2408 2472 3.869065 CTTTTCATCCGGTAAGTGGCTA 58.131 45.455 0.00 0.00 0.00 3.93
2409 2473 2.711542 CTTTTCATCCGGTAAGTGGCT 58.288 47.619 0.00 0.00 0.00 4.75
2410 2474 1.132453 GCTTTTCATCCGGTAAGTGGC 59.868 52.381 0.00 0.00 0.00 5.01
2411 2475 2.161609 GTGCTTTTCATCCGGTAAGTGG 59.838 50.000 0.00 0.00 0.00 4.00
2412 2476 2.811431 TGTGCTTTTCATCCGGTAAGTG 59.189 45.455 0.00 0.00 0.00 3.16
2413 2477 2.812011 GTGTGCTTTTCATCCGGTAAGT 59.188 45.455 0.00 0.00 0.00 2.24
2414 2478 2.811431 TGTGTGCTTTTCATCCGGTAAG 59.189 45.455 0.00 0.17 0.00 2.34
2415 2479 2.550606 GTGTGTGCTTTTCATCCGGTAA 59.449 45.455 0.00 0.00 0.00 2.85
2416 2480 2.147958 GTGTGTGCTTTTCATCCGGTA 58.852 47.619 0.00 0.00 0.00 4.02
2417 2481 0.951558 GTGTGTGCTTTTCATCCGGT 59.048 50.000 0.00 0.00 0.00 5.28
2418 2482 1.238439 AGTGTGTGCTTTTCATCCGG 58.762 50.000 0.00 0.00 0.00 5.14
2419 2483 3.354089 AAAGTGTGTGCTTTTCATCCG 57.646 42.857 0.00 0.00 35.37 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.