Multiple sequence alignment - TraesCS2A01G334500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G334500 chr2A 100.000 5720 0 0 1 5720 568314988 568309269 0.000000e+00 10563.0
1 TraesCS2A01G334500 chr2A 92.055 793 59 3 1 791 532211340 532212130 0.000000e+00 1112.0
2 TraesCS2A01G334500 chr2B 95.617 2099 75 7 2727 4821 494287623 494285538 0.000000e+00 3350.0
3 TraesCS2A01G334500 chr2B 93.548 1984 83 16 792 2750 494289537 494287574 0.000000e+00 2913.0
4 TraesCS2A01G334500 chr2B 93.590 546 28 6 5177 5720 494285562 494285022 0.000000e+00 808.0
5 TraesCS2A01G334500 chr2D 97.618 1637 34 4 3186 4821 421825019 421823387 0.000000e+00 2802.0
6 TraesCS2A01G334500 chr2D 96.683 1417 46 1 794 2209 421826532 421825116 0.000000e+00 2355.0
7 TraesCS2A01G334500 chr2D 95.918 294 10 2 5428 5720 421822106 421821814 5.190000e-130 475.0
8 TraesCS2A01G334500 chr2D 93.846 260 14 2 5178 5436 421823410 421823152 1.930000e-104 390.0
9 TraesCS2A01G334500 chr2D 94.595 37 1 1 2155 2191 421825020 421825055 8.010000e-04 56.5
10 TraesCS2A01G334500 chr4A 92.462 796 56 3 1 794 621134185 621133392 0.000000e+00 1134.0
11 TraesCS2A01G334500 chr1A 92.453 795 59 1 1 794 208879706 208878912 0.000000e+00 1134.0
12 TraesCS2A01G334500 chr1A 92.085 796 58 4 1 794 521247260 521246468 0.000000e+00 1116.0
13 TraesCS2A01G334500 chr1A 99.727 366 1 0 4818 5183 45799846 45800211 0.000000e+00 671.0
14 TraesCS2A01G334500 chr3A 91.593 797 63 3 1 795 19502395 19503189 0.000000e+00 1098.0
15 TraesCS2A01G334500 chr3A 99.727 366 1 0 4818 5183 319968812 319968447 0.000000e+00 671.0
16 TraesCS2A01G334500 chr3A 99.458 369 2 0 4819 5187 383709044 383709412 0.000000e+00 671.0
17 TraesCS2A01G334500 chr7A 91.677 793 62 3 1 791 709783148 709783938 0.000000e+00 1096.0
18 TraesCS2A01G334500 chr7A 99.191 371 1 2 4815 5183 727222104 727222474 0.000000e+00 667.0
19 TraesCS2A01G334500 chr7A 90.244 123 12 0 669 791 55368631 55368753 1.650000e-35 161.0
20 TraesCS2A01G334500 chr7A 89.431 123 13 0 669 791 494626026 494625904 7.670000e-34 156.0
21 TraesCS2A01G334500 chr7A 84.956 113 13 3 3116 3227 48438177 48438068 1.680000e-20 111.0
22 TraesCS2A01G334500 chr7A 82.418 91 10 4 2695 2782 736059319 736059232 2.210000e-09 75.0
23 TraesCS2A01G334500 chr5A 91.103 798 64 5 1 794 6303170 6302376 0.000000e+00 1074.0
24 TraesCS2A01G334500 chr5A 93.863 717 34 8 1 715 20787508 20788216 0.000000e+00 1072.0
25 TraesCS2A01G334500 chr5A 99.464 373 1 1 4811 5183 603008452 603008081 0.000000e+00 676.0
26 TraesCS2A01G334500 chr5A 89.011 91 7 3 3127 3216 556718798 556718710 6.060000e-20 110.0
27 TraesCS2A01G334500 chr5A 89.655 58 5 1 2725 2781 43497197 43497254 7.950000e-09 73.1
28 TraesCS2A01G334500 chr6A 94.168 703 37 3 1 702 189548488 189549187 0.000000e+00 1068.0
29 TraesCS2A01G334500 chr6A 99.189 370 2 1 4817 5186 208511500 208511868 0.000000e+00 665.0
30 TraesCS2A01G334500 chr6A 78.351 485 78 13 1483 1965 495788524 495788983 7.250000e-74 289.0
31 TraesCS2A01G334500 chr6A 85.556 90 8 5 2695 2782 591478 591564 7.890000e-14 89.8
32 TraesCS2A01G334500 chr4B 99.728 367 1 0 4819 5185 306604682 306604316 0.000000e+00 673.0
33 TraesCS2A01G334500 chr3B 99.727 366 1 0 4817 5182 81528711 81529076 0.000000e+00 671.0
34 TraesCS2A01G334500 chr3B 99.727 366 1 0 4819 5184 353864964 353864599 0.000000e+00 671.0
35 TraesCS2A01G334500 chr3B 81.416 113 13 7 2669 2778 570971975 570972082 1.020000e-12 86.1
36 TraesCS2A01G334500 chr3B 89.655 58 5 1 2725 2781 41153634 41153691 7.950000e-09 73.1
37 TraesCS2A01G334500 chr3D 90.110 91 6 3 3129 3218 114317020 114317108 1.300000e-21 115.0
38 TraesCS2A01G334500 chr3D 89.247 93 6 4 3127 3218 23171305 23171394 4.680000e-21 113.0
39 TraesCS2A01G334500 chr6B 88.172 93 8 3 3129 3220 76290102 76290192 2.180000e-19 108.0
40 TraesCS2A01G334500 chr6B 89.655 58 5 1 2725 2781 18870822 18870765 7.950000e-09 73.1
41 TraesCS2A01G334500 chr5D 87.500 88 10 1 3131 3218 28642930 28643016 3.650000e-17 100.0
42 TraesCS2A01G334500 chr1D 86.957 92 8 4 3129 3219 104235089 104235001 3.650000e-17 100.0
43 TraesCS2A01G334500 chr5B 84.444 90 9 5 2695 2782 641820472 641820558 3.670000e-12 84.2
44 TraesCS2A01G334500 chr4D 79.439 107 14 7 2678 2782 460775639 460775539 1.030000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G334500 chr2A 568309269 568314988 5719 True 10563.0 10563 100.000000 1 5720 1 chr2A.!!$R1 5719
1 TraesCS2A01G334500 chr2A 532211340 532212130 790 False 1112.0 1112 92.055000 1 791 1 chr2A.!!$F1 790
2 TraesCS2A01G334500 chr2B 494285022 494289537 4515 True 2357.0 3350 94.251667 792 5720 3 chr2B.!!$R1 4928
3 TraesCS2A01G334500 chr2D 421821814 421826532 4718 True 1505.5 2802 96.016250 794 5720 4 chr2D.!!$R1 4926
4 TraesCS2A01G334500 chr4A 621133392 621134185 793 True 1134.0 1134 92.462000 1 794 1 chr4A.!!$R1 793
5 TraesCS2A01G334500 chr1A 208878912 208879706 794 True 1134.0 1134 92.453000 1 794 1 chr1A.!!$R1 793
6 TraesCS2A01G334500 chr1A 521246468 521247260 792 True 1116.0 1116 92.085000 1 794 1 chr1A.!!$R2 793
7 TraesCS2A01G334500 chr3A 19502395 19503189 794 False 1098.0 1098 91.593000 1 795 1 chr3A.!!$F1 794
8 TraesCS2A01G334500 chr7A 709783148 709783938 790 False 1096.0 1096 91.677000 1 791 1 chr7A.!!$F2 790
9 TraesCS2A01G334500 chr5A 6302376 6303170 794 True 1074.0 1074 91.103000 1 794 1 chr5A.!!$R1 793
10 TraesCS2A01G334500 chr5A 20787508 20788216 708 False 1072.0 1072 93.863000 1 715 1 chr5A.!!$F1 714
11 TraesCS2A01G334500 chr6A 189548488 189549187 699 False 1068.0 1068 94.168000 1 702 1 chr6A.!!$F2 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 318 0.678950 TGAGCGTGGTCAAGATGTGA 59.321 50.000 0.00 0.0 0.00 3.58 F
471 474 1.077663 AGAAGTGGTGGGCATGGAATT 59.922 47.619 0.00 0.0 0.00 2.17 F
922 933 1.358152 AGGAATTCCCTCGAACACCA 58.642 50.000 21.22 0.0 43.31 4.17 F
2439 2466 0.461516 CACTGCGAGCATGTCTGGAT 60.462 55.000 0.00 0.0 0.00 3.41 F
2881 2917 0.824109 CAGTTCGTATCCCTGAGCCA 59.176 55.000 0.00 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 1898 0.174617 CCTCGACAAGCTCCTCCTTC 59.825 60.000 0.00 0.0 0.00 3.46 R
2421 2448 0.251354 AATCCAGACATGCTCGCAGT 59.749 50.000 0.00 0.0 0.00 4.40 R
2632 2668 0.179018 GCTGCGGGGATTTATGACCT 60.179 55.000 0.00 0.0 0.00 3.85 R
3477 3516 3.655211 CCAGGAGGGCCAGCAAGT 61.655 66.667 6.18 0.0 36.29 3.16 R
4871 4911 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.569413 GCAAATGGCTGTACATACAACTAC 58.431 41.667 0.00 0.00 40.25 2.73
54 55 7.597743 GCTGTACATACAACTACGGCTATTATT 59.402 37.037 0.00 0.00 40.65 1.40
162 165 2.038269 CAGGCGGCGGCTAGAAAAA 61.038 57.895 35.69 0.00 36.44 1.94
192 195 4.101430 AGAGAGCTTTTGGGATTTTGCAAA 59.899 37.500 8.05 8.05 0.00 3.68
223 226 1.568504 ATTGTGAGAGGACCGGCTAA 58.431 50.000 0.00 0.00 0.00 3.09
229 232 4.020039 TGTGAGAGGACCGGCTAAATTTTA 60.020 41.667 0.00 0.00 0.00 1.52
257 260 9.494271 GATCAGAAGATGCTTTGGTACATAATA 57.506 33.333 0.00 0.00 33.58 0.98
305 308 0.817654 TCATCGAGAATGAGCGTGGT 59.182 50.000 0.00 0.00 39.52 4.16
314 317 1.730501 ATGAGCGTGGTCAAGATGTG 58.269 50.000 5.79 0.00 0.00 3.21
315 318 0.678950 TGAGCGTGGTCAAGATGTGA 59.321 50.000 0.00 0.00 0.00 3.58
380 383 1.492993 GGAGGACTGAAAGGGTGGCT 61.493 60.000 0.00 0.00 39.30 4.75
414 417 2.102420 TCCTATCATGCCATTCGACGTT 59.898 45.455 0.00 0.00 0.00 3.99
453 456 8.544687 TGATCTTCAGAAGGATCTCATTAAGA 57.455 34.615 10.42 0.00 39.09 2.10
471 474 1.077663 AGAAGTGGTGGGCATGGAATT 59.922 47.619 0.00 0.00 0.00 2.17
498 501 5.618418 CGACAAAGAGCATCATGATTTGTGT 60.618 40.000 22.63 12.98 42.44 3.72
922 933 1.358152 AGGAATTCCCTCGAACACCA 58.642 50.000 21.22 0.00 43.31 4.17
1011 1022 1.522580 GGCTCCAATGGCGTCTCTC 60.523 63.158 0.00 0.00 0.00 3.20
1242 1253 4.452733 GGGCTCCGAACGGACCAG 62.453 72.222 24.24 13.69 39.76 4.00
1665 1676 2.943978 CGACGAGGGGTTCCTGCTT 61.944 63.158 0.00 0.00 45.05 3.91
1863 1874 3.549794 GAAGCAGCAGGTAGGATTTGAT 58.450 45.455 0.00 0.00 0.00 2.57
1887 1898 3.197790 CAGGGCGTGGATGAAGCG 61.198 66.667 0.00 0.00 0.00 4.68
2001 2027 4.833478 AGACAATGGACATAGCAAGTCT 57.167 40.909 0.00 0.00 36.29 3.24
2077 2103 3.228453 TCTCTATAACAAGCCCTACCCG 58.772 50.000 0.00 0.00 0.00 5.28
2136 2162 6.841286 CGTCGATTCTGATTTTAAGAAATCCG 59.159 38.462 8.82 3.92 46.87 4.18
2153 2179 2.273179 CGGGTCGACTGGGAGTTCA 61.273 63.158 16.46 0.00 0.00 3.18
2210 2236 3.492337 TGCCAACTAAACTTTTCCCGAT 58.508 40.909 0.00 0.00 0.00 4.18
2211 2237 3.504520 TGCCAACTAAACTTTTCCCGATC 59.495 43.478 0.00 0.00 0.00 3.69
2343 2370 4.555262 TGCTTGCCTTATTAACTTGTTGC 58.445 39.130 0.00 0.00 0.00 4.17
2367 2394 4.534500 TGGACTACAATGTGGTTCCTGTAT 59.466 41.667 5.70 0.00 0.00 2.29
2373 2400 6.515272 ACAATGTGGTTCCTGTATGAAATC 57.485 37.500 0.00 0.00 0.00 2.17
2378 2405 5.815222 TGTGGTTCCTGTATGAAATCGTATG 59.185 40.000 0.00 0.00 0.00 2.39
2382 2409 7.392113 TGGTTCCTGTATGAAATCGTATGTTTT 59.608 33.333 0.00 0.00 0.00 2.43
2406 2433 4.488770 TCCCTTTTATTTCACAAAGCCCT 58.511 39.130 0.00 0.00 0.00 5.19
2416 2443 3.360867 TCACAAAGCCCTGTTTCAAGAA 58.639 40.909 0.00 0.00 0.00 2.52
2421 2448 4.817318 AAGCCCTGTTTCAAGAAAAACA 57.183 36.364 0.00 2.60 44.59 2.83
2423 2450 3.769300 AGCCCTGTTTCAAGAAAAACACT 59.231 39.130 0.00 0.00 42.58 3.55
2435 2462 1.597742 AAAACACTGCGAGCATGTCT 58.402 45.000 0.00 0.00 0.00 3.41
2436 2463 0.870393 AAACACTGCGAGCATGTCTG 59.130 50.000 0.00 0.00 0.00 3.51
2437 2464 0.952497 AACACTGCGAGCATGTCTGG 60.952 55.000 0.00 0.00 0.00 3.86
2438 2465 1.079612 CACTGCGAGCATGTCTGGA 60.080 57.895 0.00 0.00 0.00 3.86
2439 2466 0.461516 CACTGCGAGCATGTCTGGAT 60.462 55.000 0.00 0.00 0.00 3.41
2461 2488 9.465199 TGGATTGGAATATGAATACATATGTGG 57.535 33.333 18.81 0.00 45.48 4.17
2470 2497 6.247229 TGAATACATATGTGGTAGGCACTT 57.753 37.500 18.81 0.00 41.75 3.16
2496 2523 8.567285 ACGTCTAAGATGAATTCCAATTTTCT 57.433 30.769 2.27 0.00 0.00 2.52
2498 2525 8.668353 CGTCTAAGATGAATTCCAATTTTCTCA 58.332 33.333 2.27 0.00 0.00 3.27
2582 2609 7.417797 GGTTATCCCATTTTTGAGCACATACAT 60.418 37.037 0.00 0.00 0.00 2.29
2600 2627 3.966979 ACATGCCCTACACATCATCAAA 58.033 40.909 0.00 0.00 0.00 2.69
2632 2668 7.656412 TCTAGCAACAAATAATTGAAGCACAA 58.344 30.769 12.16 0.00 40.07 3.33
2654 2690 1.956477 GTCATAAATCCCCGCAGCAAT 59.044 47.619 0.00 0.00 0.00 3.56
2713 2749 4.204012 TGGATTACCCCATTTAGCGAAAG 58.796 43.478 0.00 0.00 34.81 2.62
2714 2750 3.568430 GGATTACCCCATTTAGCGAAAGG 59.432 47.826 0.00 0.00 0.00 3.11
2715 2751 7.342040 TGGATTACCCCATTTAGCGAAAGGT 62.342 44.000 3.35 5.30 39.66 3.50
2716 2752 2.597578 ACCCCATTTAGCGAAAGGTT 57.402 45.000 3.35 0.00 44.26 3.50
2717 2753 2.884320 ACCCCATTTAGCGAAAGGTTT 58.116 42.857 3.35 0.00 44.26 3.27
2718 2754 2.560981 ACCCCATTTAGCGAAAGGTTTG 59.439 45.455 3.35 0.00 44.26 2.93
2719 2755 2.606108 CCCATTTAGCGAAAGGTTTGC 58.394 47.619 3.35 0.00 44.26 3.68
2720 2756 2.606108 CCATTTAGCGAAAGGTTTGCC 58.394 47.619 3.35 0.00 44.26 4.52
2722 2758 3.442273 CCATTTAGCGAAAGGTTTGCCTA 59.558 43.478 3.35 0.00 46.33 3.93
2723 2759 4.097892 CCATTTAGCGAAAGGTTTGCCTAT 59.902 41.667 3.35 0.00 46.33 2.57
2724 2760 5.394115 CCATTTAGCGAAAGGTTTGCCTATT 60.394 40.000 3.35 0.00 46.33 1.73
2725 2761 5.715434 TTTAGCGAAAGGTTTGCCTATTT 57.285 34.783 0.00 0.00 46.33 1.40
2726 2762 5.715434 TTAGCGAAAGGTTTGCCTATTTT 57.285 34.783 0.00 0.00 46.33 1.82
2727 2763 4.600692 AGCGAAAGGTTTGCCTATTTTT 57.399 36.364 0.00 0.00 46.33 1.94
2728 2764 5.715434 AGCGAAAGGTTTGCCTATTTTTA 57.285 34.783 0.00 0.00 46.33 1.52
2729 2765 5.466819 AGCGAAAGGTTTGCCTATTTTTAC 58.533 37.500 0.00 0.00 46.33 2.01
2730 2766 4.624024 GCGAAAGGTTTGCCTATTTTTACC 59.376 41.667 0.00 0.00 46.33 2.85
2731 2767 5.165676 CGAAAGGTTTGCCTATTTTTACCC 58.834 41.667 0.00 0.00 46.33 3.69
2732 2768 5.484715 GAAAGGTTTGCCTATTTTTACCCC 58.515 41.667 0.00 0.00 46.33 4.95
2733 2769 4.134933 AGGTTTGCCTATTTTTACCCCA 57.865 40.909 0.00 0.00 44.90 4.96
2734 2770 4.694512 AGGTTTGCCTATTTTTACCCCAT 58.305 39.130 0.00 0.00 44.90 4.00
2735 2771 5.097948 AGGTTTGCCTATTTTTACCCCATT 58.902 37.500 0.00 0.00 44.90 3.16
2736 2772 5.550011 AGGTTTGCCTATTTTTACCCCATTT 59.450 36.000 0.00 0.00 44.90 2.32
2737 2773 6.731448 AGGTTTGCCTATTTTTACCCCATTTA 59.269 34.615 0.00 0.00 44.90 1.40
2738 2774 7.045416 GGTTTGCCTATTTTTACCCCATTTAG 58.955 38.462 0.00 0.00 0.00 1.85
2739 2775 5.862678 TGCCTATTTTTACCCCATTTAGC 57.137 39.130 0.00 0.00 0.00 3.09
2740 2776 5.273208 TGCCTATTTTTACCCCATTTAGCA 58.727 37.500 0.00 0.00 0.00 3.49
2741 2777 5.721960 TGCCTATTTTTACCCCATTTAGCAA 59.278 36.000 0.00 0.00 0.00 3.91
2742 2778 6.213600 TGCCTATTTTTACCCCATTTAGCAAA 59.786 34.615 0.00 0.00 0.00 3.68
2743 2779 7.106890 GCCTATTTTTACCCCATTTAGCAAAA 58.893 34.615 0.00 0.00 0.00 2.44
2758 2794 9.727627 CATTTAGCAAAAGTTTTGCCAATTTTA 57.272 25.926 37.40 24.36 45.98 1.52
2783 2819 4.622740 CCCATTCAAAATTTTGAGAGCGAC 59.377 41.667 27.52 0.00 46.68 5.19
2804 2840 1.132643 CTGCTAGGTCGTCAGGTACAC 59.867 57.143 0.00 0.00 0.00 2.90
2808 2844 3.243002 GCTAGGTCGTCAGGTACACATAC 60.243 52.174 0.00 0.00 0.00 2.39
2809 2845 2.799017 AGGTCGTCAGGTACACATACA 58.201 47.619 0.00 0.00 32.40 2.29
2810 2846 3.362706 AGGTCGTCAGGTACACATACAT 58.637 45.455 0.00 0.00 32.40 2.29
2811 2847 3.130516 AGGTCGTCAGGTACACATACATG 59.869 47.826 0.00 0.00 43.09 3.21
2826 2862 2.113860 ACATGGCAAGCTATGTCGTT 57.886 45.000 16.85 0.00 43.09 3.85
2833 2869 3.304391 GGCAAGCTATGTCGTTGTTTTCA 60.304 43.478 0.00 0.00 0.00 2.69
2841 2877 3.701241 TGTCGTTGTTTTCATCCTTTGC 58.299 40.909 0.00 0.00 0.00 3.68
2881 2917 0.824109 CAGTTCGTATCCCTGAGCCA 59.176 55.000 0.00 0.00 0.00 4.75
2915 2951 2.224161 GCACCCACCTGCAAATGTTTAA 60.224 45.455 0.00 0.00 37.11 1.52
2997 3035 1.666209 CCAACCATGCCATTCGACCC 61.666 60.000 0.00 0.00 0.00 4.46
3033 3071 2.882927 AAAAACAGGAGGAAAACCGC 57.117 45.000 0.00 0.00 0.00 5.68
3063 3101 2.283472 ATTACGTGTACCCGACGGCC 62.283 60.000 8.86 0.00 41.21 6.13
3079 3117 0.958876 GGCCGGGACACACCTTTTAG 60.959 60.000 2.18 0.00 38.98 1.85
3082 3120 2.629051 CCGGGACACACCTTTTAGATC 58.371 52.381 0.00 0.00 38.98 2.75
3083 3121 2.236395 CCGGGACACACCTTTTAGATCT 59.764 50.000 0.00 0.00 38.98 2.75
3085 3123 3.679083 CGGGACACACCTTTTAGATCTCC 60.679 52.174 0.00 0.00 38.98 3.71
3092 3130 6.183347 CACACCTTTTAGATCTCCCTTCAAT 58.817 40.000 0.00 0.00 0.00 2.57
3116 3154 4.940905 TTTTAAAGGGGTAACAACCAGC 57.059 40.909 0.00 0.00 39.74 4.85
3126 3164 2.577449 AACAACCAGCAAAACTTCCG 57.423 45.000 0.00 0.00 0.00 4.30
3154 3192 2.545537 GGTAACCCGGATGAGAATCC 57.454 55.000 0.73 0.00 37.36 3.01
3576 3615 4.515191 TCTGTTTCTGCTAGCGAATTTGTT 59.485 37.500 18.23 0.00 0.00 2.83
3606 3645 4.847444 GGAAGAGGAGCAGCCCGC 62.847 72.222 0.00 0.00 42.91 6.13
3989 4028 4.015084 AGATTTTGGCTGTTCATCTCAGG 58.985 43.478 0.00 0.00 33.98 3.86
4183 4222 5.649782 AGTTGATTGGTTCCTTATGCTTG 57.350 39.130 0.00 0.00 0.00 4.01
4223 4262 7.220599 TGCAAGCAAATTTAAATATCGCTTC 57.779 32.000 20.36 16.70 36.15 3.86
4307 4346 4.432712 GAACAGTGCAAGATTTGTGGTTT 58.567 39.130 0.00 0.00 0.00 3.27
4581 4621 4.628715 GCCATTGAGAGGGAAAAGTATGGA 60.629 45.833 0.00 0.00 34.58 3.41
4724 4764 6.423001 GGTTATCATACGTTAAGCTAACTGGG 59.577 42.308 0.00 0.00 36.54 4.45
4807 4847 9.760077 TCCTTTTAAATTCCTATAAGTAGCTCG 57.240 33.333 0.00 0.00 0.00 5.03
4808 4848 9.760077 CCTTTTAAATTCCTATAAGTAGCTCGA 57.240 33.333 0.00 0.00 0.00 4.04
4813 4853 8.421673 AAATTCCTATAAGTAGCTCGACAAAC 57.578 34.615 0.00 0.00 0.00 2.93
4814 4854 6.770746 TTCCTATAAGTAGCTCGACAAACT 57.229 37.500 0.00 0.00 0.00 2.66
4815 4855 6.132791 TCCTATAAGTAGCTCGACAAACTG 57.867 41.667 0.00 0.00 0.00 3.16
4816 4856 5.884232 TCCTATAAGTAGCTCGACAAACTGA 59.116 40.000 0.00 0.00 0.00 3.41
4817 4857 6.546403 TCCTATAAGTAGCTCGACAAACTGAT 59.454 38.462 0.00 0.00 0.00 2.90
4818 4858 7.718314 TCCTATAAGTAGCTCGACAAACTGATA 59.282 37.037 0.00 0.00 0.00 2.15
4819 4859 8.350722 CCTATAAGTAGCTCGACAAACTGATAA 58.649 37.037 0.00 0.00 0.00 1.75
4820 4860 7.988904 ATAAGTAGCTCGACAAACTGATAAC 57.011 36.000 0.00 0.00 0.00 1.89
4821 4861 5.646577 AGTAGCTCGACAAACTGATAACT 57.353 39.130 0.00 0.00 0.00 2.24
4822 4862 5.642686 AGTAGCTCGACAAACTGATAACTC 58.357 41.667 0.00 0.00 0.00 3.01
4823 4863 3.851098 AGCTCGACAAACTGATAACTCC 58.149 45.455 0.00 0.00 0.00 3.85
4824 4864 2.599082 GCTCGACAAACTGATAACTCCG 59.401 50.000 0.00 0.00 0.00 4.63
4825 4865 2.599082 CTCGACAAACTGATAACTCCGC 59.401 50.000 0.00 0.00 0.00 5.54
4826 4866 1.659098 CGACAAACTGATAACTCCGCC 59.341 52.381 0.00 0.00 0.00 6.13
4827 4867 2.674177 CGACAAACTGATAACTCCGCCT 60.674 50.000 0.00 0.00 0.00 5.52
4828 4868 3.428452 CGACAAACTGATAACTCCGCCTA 60.428 47.826 0.00 0.00 0.00 3.93
4829 4869 4.694339 GACAAACTGATAACTCCGCCTAT 58.306 43.478 0.00 0.00 0.00 2.57
4830 4870 4.442706 ACAAACTGATAACTCCGCCTATG 58.557 43.478 0.00 0.00 0.00 2.23
4831 4871 4.081087 ACAAACTGATAACTCCGCCTATGT 60.081 41.667 0.00 0.00 0.00 2.29
4832 4872 4.323553 AACTGATAACTCCGCCTATGTC 57.676 45.455 0.00 0.00 0.00 3.06
4833 4873 3.567397 ACTGATAACTCCGCCTATGTCT 58.433 45.455 0.00 0.00 0.00 3.41
4834 4874 3.961408 ACTGATAACTCCGCCTATGTCTT 59.039 43.478 0.00 0.00 0.00 3.01
4835 4875 4.038162 ACTGATAACTCCGCCTATGTCTTC 59.962 45.833 0.00 0.00 0.00 2.87
4836 4876 4.215908 TGATAACTCCGCCTATGTCTTCT 58.784 43.478 0.00 0.00 0.00 2.85
4837 4877 5.382616 TGATAACTCCGCCTATGTCTTCTA 58.617 41.667 0.00 0.00 0.00 2.10
4838 4878 5.473846 TGATAACTCCGCCTATGTCTTCTAG 59.526 44.000 0.00 0.00 0.00 2.43
4839 4879 2.588620 ACTCCGCCTATGTCTTCTAGG 58.411 52.381 0.00 0.00 39.06 3.02
4855 4895 2.203209 GGCATAGCCGGTCCCAAG 60.203 66.667 1.90 0.00 39.62 3.61
4856 4896 2.902343 GCATAGCCGGTCCCAAGC 60.902 66.667 1.90 0.00 0.00 4.01
4857 4897 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
4858 4898 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
4867 4907 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
4868 4908 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
4869 4909 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
4870 4910 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
4871 4911 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
4872 4912 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
4873 4913 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
4874 4914 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
4875 4915 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
4876 4916 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
4877 4917 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
4878 4918 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
4879 4919 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
4880 4920 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
4881 4921 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
4882 4922 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
4883 4923 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
4884 4924 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
4885 4925 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
4886 4926 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
4887 4927 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
4888 4928 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
4889 4929 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
4890 4930 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
4891 4931 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
4892 4932 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
4893 4933 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
4904 4944 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
4905 4945 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
4906 4946 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
4907 4947 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
4908 4948 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
4909 4949 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
4910 4950 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
4911 4951 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
4912 4952 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
4913 4953 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
4914 4954 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
4915 4955 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
4916 4956 3.187842 CCAACGTAAAAACTAGCCAGTCC 59.812 47.826 0.00 0.00 32.29 3.85
4917 4957 3.049708 ACGTAAAAACTAGCCAGTCCC 57.950 47.619 0.00 0.00 32.29 4.46
4918 4958 2.369532 ACGTAAAAACTAGCCAGTCCCA 59.630 45.455 0.00 0.00 32.29 4.37
4919 4959 3.008704 ACGTAAAAACTAGCCAGTCCCAT 59.991 43.478 0.00 0.00 32.29 4.00
4920 4960 4.223477 ACGTAAAAACTAGCCAGTCCCATA 59.777 41.667 0.00 0.00 32.29 2.74
4921 4961 4.809426 CGTAAAAACTAGCCAGTCCCATAG 59.191 45.833 0.00 0.00 32.29 2.23
4922 4962 3.933861 AAAACTAGCCAGTCCCATAGG 57.066 47.619 0.00 0.00 32.29 2.57
4923 4963 2.570386 AACTAGCCAGTCCCATAGGT 57.430 50.000 0.00 0.00 32.29 3.08
4924 4964 3.700863 AACTAGCCAGTCCCATAGGTA 57.299 47.619 0.00 0.00 32.29 3.08
4925 4965 3.925261 ACTAGCCAGTCCCATAGGTAT 57.075 47.619 0.00 0.00 0.00 2.73
4926 4966 3.511477 ACTAGCCAGTCCCATAGGTATG 58.489 50.000 0.00 0.00 0.00 2.39
4927 4967 2.795291 AGCCAGTCCCATAGGTATGA 57.205 50.000 0.00 0.00 35.75 2.15
4928 4968 3.060479 AGCCAGTCCCATAGGTATGAA 57.940 47.619 0.00 0.00 35.75 2.57
4929 4969 3.393687 AGCCAGTCCCATAGGTATGAAA 58.606 45.455 0.00 0.00 35.75 2.69
4930 4970 3.136626 AGCCAGTCCCATAGGTATGAAAC 59.863 47.826 0.00 0.00 35.75 2.78
4941 4981 3.420839 GGTATGAAACCCATTTGAGCG 57.579 47.619 0.00 0.00 43.16 5.03
4942 4982 3.013921 GGTATGAAACCCATTTGAGCGA 58.986 45.455 0.00 0.00 43.16 4.93
4943 4983 3.065371 GGTATGAAACCCATTTGAGCGAG 59.935 47.826 0.00 0.00 43.16 5.03
4944 4984 2.559698 TGAAACCCATTTGAGCGAGA 57.440 45.000 0.00 0.00 0.00 4.04
4945 4985 2.857483 TGAAACCCATTTGAGCGAGAA 58.143 42.857 0.00 0.00 0.00 2.87
4946 4986 3.420893 TGAAACCCATTTGAGCGAGAAT 58.579 40.909 0.00 0.00 0.00 2.40
4947 4987 4.584874 TGAAACCCATTTGAGCGAGAATA 58.415 39.130 0.00 0.00 0.00 1.75
4948 4988 4.635765 TGAAACCCATTTGAGCGAGAATAG 59.364 41.667 0.00 0.00 0.00 1.73
4949 4989 3.914426 ACCCATTTGAGCGAGAATAGT 57.086 42.857 0.00 0.00 0.00 2.12
4950 4990 5.353394 AACCCATTTGAGCGAGAATAGTA 57.647 39.130 0.00 0.00 0.00 1.82
4951 4991 4.694339 ACCCATTTGAGCGAGAATAGTAC 58.306 43.478 0.00 0.00 0.00 2.73
4952 4992 4.406003 ACCCATTTGAGCGAGAATAGTACT 59.594 41.667 0.00 0.00 0.00 2.73
4953 4993 5.597182 ACCCATTTGAGCGAGAATAGTACTA 59.403 40.000 4.77 4.77 0.00 1.82
4954 4994 6.153067 CCCATTTGAGCGAGAATAGTACTAG 58.847 44.000 8.85 0.00 0.00 2.57
4955 4995 6.153067 CCATTTGAGCGAGAATAGTACTAGG 58.847 44.000 8.85 0.00 0.00 3.02
4956 4996 6.016192 CCATTTGAGCGAGAATAGTACTAGGA 60.016 42.308 8.85 0.00 0.00 2.94
4957 4997 7.309499 CCATTTGAGCGAGAATAGTACTAGGAT 60.309 40.741 8.85 0.00 0.00 3.24
4958 4998 6.561737 TTGAGCGAGAATAGTACTAGGATG 57.438 41.667 8.85 0.00 0.00 3.51
4959 4999 5.004448 TGAGCGAGAATAGTACTAGGATGG 58.996 45.833 8.85 0.00 0.00 3.51
4960 5000 4.337145 AGCGAGAATAGTACTAGGATGGG 58.663 47.826 8.85 0.00 0.00 4.00
4961 5001 4.080687 GCGAGAATAGTACTAGGATGGGT 58.919 47.826 8.85 0.00 0.00 4.51
4962 5002 4.082679 GCGAGAATAGTACTAGGATGGGTG 60.083 50.000 8.85 0.00 0.00 4.61
4963 5003 5.314529 CGAGAATAGTACTAGGATGGGTGA 58.685 45.833 8.85 0.00 0.00 4.02
4964 5004 5.181622 CGAGAATAGTACTAGGATGGGTGAC 59.818 48.000 8.85 0.00 0.00 3.67
4978 5018 1.487300 GGTGACCTCCTAGGAAGTCC 58.513 60.000 29.70 22.12 37.67 3.85
4980 5020 2.380941 GTGACCTCCTAGGAAGTCCTC 58.619 57.143 29.70 21.09 44.77 3.71
4981 5021 1.064611 TGACCTCCTAGGAAGTCCTCG 60.065 57.143 29.70 10.80 44.77 4.63
4982 5022 1.001282 ACCTCCTAGGAAGTCCTCGT 58.999 55.000 13.77 0.00 44.77 4.18
4983 5023 1.341187 ACCTCCTAGGAAGTCCTCGTG 60.341 57.143 13.77 0.00 44.77 4.35
4984 5024 1.064611 CCTCCTAGGAAGTCCTCGTGA 60.065 57.143 13.77 0.00 44.77 4.35
4985 5025 2.620886 CCTCCTAGGAAGTCCTCGTGAA 60.621 54.545 13.77 0.00 44.77 3.18
4986 5026 3.090037 CTCCTAGGAAGTCCTCGTGAAA 58.910 50.000 13.77 0.00 44.77 2.69
4987 5027 3.090037 TCCTAGGAAGTCCTCGTGAAAG 58.910 50.000 9.71 0.00 44.77 2.62
4988 5028 2.166664 CCTAGGAAGTCCTCGTGAAAGG 59.833 54.545 1.05 0.05 44.77 3.11
4989 5029 0.977395 AGGAAGTCCTCGTGAAAGGG 59.023 55.000 0.00 0.00 44.77 3.95
4990 5030 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
4991 5031 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
4992 5032 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
4993 5033 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
4994 5034 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
5005 5045 6.652205 TGAAAGGGTTTCATATCTAAGGGT 57.348 37.500 0.00 0.00 44.21 4.34
5006 5046 7.039722 TGAAAGGGTTTCATATCTAAGGGTT 57.960 36.000 0.00 0.00 44.21 4.11
5007 5047 6.889722 TGAAAGGGTTTCATATCTAAGGGTTG 59.110 38.462 0.00 0.00 44.21 3.77
5008 5048 6.402981 AAGGGTTTCATATCTAAGGGTTGT 57.597 37.500 0.00 0.00 0.00 3.32
5009 5049 5.755849 AGGGTTTCATATCTAAGGGTTGTG 58.244 41.667 0.00 0.00 0.00 3.33
5010 5050 5.491078 AGGGTTTCATATCTAAGGGTTGTGA 59.509 40.000 0.00 0.00 0.00 3.58
5011 5051 6.160459 AGGGTTTCATATCTAAGGGTTGTGAT 59.840 38.462 0.00 0.00 0.00 3.06
5012 5052 7.349859 AGGGTTTCATATCTAAGGGTTGTGATA 59.650 37.037 0.00 0.00 0.00 2.15
5013 5053 7.661847 GGGTTTCATATCTAAGGGTTGTGATAG 59.338 40.741 0.00 0.00 0.00 2.08
5014 5054 7.661847 GGTTTCATATCTAAGGGTTGTGATAGG 59.338 40.741 0.00 0.00 0.00 2.57
5015 5055 6.360370 TCATATCTAAGGGTTGTGATAGGC 57.640 41.667 0.00 0.00 0.00 3.93
5016 5056 6.084738 TCATATCTAAGGGTTGTGATAGGCT 58.915 40.000 0.00 0.00 0.00 4.58
5017 5057 6.558775 TCATATCTAAGGGTTGTGATAGGCTT 59.441 38.462 0.00 0.00 0.00 4.35
5018 5058 4.755266 TCTAAGGGTTGTGATAGGCTTC 57.245 45.455 0.00 0.00 0.00 3.86
5019 5059 2.403252 AAGGGTTGTGATAGGCTTCG 57.597 50.000 0.00 0.00 0.00 3.79
5020 5060 0.107654 AGGGTTGTGATAGGCTTCGC 60.108 55.000 0.00 0.00 0.00 4.70
5021 5061 1.429148 GGGTTGTGATAGGCTTCGCG 61.429 60.000 0.00 0.00 0.00 5.87
5022 5062 0.459585 GGTTGTGATAGGCTTCGCGA 60.460 55.000 3.71 3.71 0.00 5.87
5023 5063 0.924090 GTTGTGATAGGCTTCGCGAG 59.076 55.000 9.59 4.97 0.00 5.03
5031 5071 2.807895 GCTTCGCGAGCCAACGTA 60.808 61.111 9.59 0.00 46.01 3.57
5032 5072 2.377310 GCTTCGCGAGCCAACGTAA 61.377 57.895 9.59 0.00 46.01 3.18
5033 5073 1.893168 GCTTCGCGAGCCAACGTAAA 61.893 55.000 9.59 0.00 46.01 2.01
5034 5074 0.509499 CTTCGCGAGCCAACGTAAAA 59.491 50.000 9.59 0.00 35.59 1.52
5035 5075 0.935898 TTCGCGAGCCAACGTAAAAA 59.064 45.000 9.59 0.00 35.59 1.94
5036 5076 0.232816 TCGCGAGCCAACGTAAAAAC 59.767 50.000 3.71 0.00 35.59 2.43
5037 5077 0.233848 CGCGAGCCAACGTAAAAACT 59.766 50.000 0.00 0.00 35.59 2.66
5038 5078 1.456544 CGCGAGCCAACGTAAAAACTA 59.543 47.619 0.00 0.00 35.59 2.24
5039 5079 2.471749 CGCGAGCCAACGTAAAAACTAG 60.472 50.000 0.00 0.00 35.59 2.57
5040 5080 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
5041 5081 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
5042 5082 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
5043 5083 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
5044 5084 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
5045 5085 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
5046 5086 4.062991 CCAACGTAAAAACTAGCCAGTCT 58.937 43.478 0.00 0.00 32.29 3.24
5047 5087 4.514066 CCAACGTAAAAACTAGCCAGTCTT 59.486 41.667 0.00 0.00 32.29 3.01
5048 5088 5.008316 CCAACGTAAAAACTAGCCAGTCTTT 59.992 40.000 0.00 0.00 32.29 2.52
5049 5089 6.459161 CCAACGTAAAAACTAGCCAGTCTTTT 60.459 38.462 0.00 0.85 32.29 2.27
5050 5090 6.056428 ACGTAAAAACTAGCCAGTCTTTTG 57.944 37.500 12.02 0.82 32.29 2.44
5051 5091 5.008316 ACGTAAAAACTAGCCAGTCTTTTGG 59.992 40.000 12.02 8.37 41.35 3.28
5052 5092 4.937201 AAAAACTAGCCAGTCTTTTGGG 57.063 40.909 0.00 0.00 38.72 4.12
5054 5094 4.717279 AAACTAGCCAGTCTTTTGGGTA 57.283 40.909 4.17 4.17 46.57 3.69
5055 5095 4.929146 AACTAGCCAGTCTTTTGGGTAT 57.071 40.909 4.61 0.00 46.74 2.73
5056 5096 4.222124 ACTAGCCAGTCTTTTGGGTATG 57.778 45.455 4.61 2.96 46.74 2.39
5057 5097 3.844211 ACTAGCCAGTCTTTTGGGTATGA 59.156 43.478 4.61 0.00 46.74 2.15
5058 5098 3.806949 AGCCAGTCTTTTGGGTATGAA 57.193 42.857 0.00 0.00 46.57 2.57
5059 5099 4.112634 AGCCAGTCTTTTGGGTATGAAA 57.887 40.909 0.00 0.00 46.57 2.69
5060 5100 3.826729 AGCCAGTCTTTTGGGTATGAAAC 59.173 43.478 0.00 0.00 46.57 2.78
5061 5101 5.294122 AGCCAGTCTTTTGGGTATGAAACC 61.294 45.833 0.00 0.00 46.57 3.27
5081 5121 2.822764 CCATTTGGGCGAGAGTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
5082 5122 2.431057 CCATTTGGGCGAGAGTAGTACT 59.569 50.000 1.37 1.37 0.00 2.73
5083 5123 3.635373 CCATTTGGGCGAGAGTAGTACTA 59.365 47.826 1.88 0.00 0.00 1.82
5084 5124 4.261656 CCATTTGGGCGAGAGTAGTACTAG 60.262 50.000 1.87 0.00 0.00 2.57
5085 5125 2.634815 TGGGCGAGAGTAGTACTAGG 57.365 55.000 1.87 0.00 0.00 3.02
5086 5126 2.121948 TGGGCGAGAGTAGTACTAGGA 58.878 52.381 1.87 0.00 0.00 2.94
5087 5127 2.709934 TGGGCGAGAGTAGTACTAGGAT 59.290 50.000 1.87 0.00 0.00 3.24
5088 5128 3.075884 GGGCGAGAGTAGTACTAGGATG 58.924 54.545 1.87 0.00 0.00 3.51
5089 5129 3.075884 GGCGAGAGTAGTACTAGGATGG 58.924 54.545 1.87 0.00 0.00 3.51
5090 5130 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
5091 5131 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
5092 5132 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
5093 5133 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
5094 5134 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
5106 5146 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
5107 5147 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
5108 5148 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
5109 5149 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
5110 5150 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
5111 5151 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
5112 5152 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
5113 5153 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
5114 5154 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
5115 5155 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
5116 5156 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
5117 5157 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
5118 5158 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
5119 5159 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
5120 5160 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
5121 5161 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
5122 5162 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
5123 5163 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
5124 5164 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
5134 5174 5.975988 TGAAAGGGTTTCATATCTAGCCT 57.024 39.130 0.00 0.00 44.21 4.58
5136 5176 6.827727 TGAAAGGGTTTCATATCTAGCCTAC 58.172 40.000 0.00 0.00 44.21 3.18
5137 5177 5.827326 AAGGGTTTCATATCTAGCCTACC 57.173 43.478 0.00 0.00 38.75 3.18
5138 5178 4.168883 AGGGTTTCATATCTAGCCTACCC 58.831 47.826 0.00 0.00 43.42 3.69
5139 5179 3.263681 GGGTTTCATATCTAGCCTACCCC 59.736 52.174 0.00 0.00 38.39 4.95
5140 5180 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
5141 5181 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
5142 5182 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
5143 5183 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
5144 5184 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
5145 5185 4.593206 TCATATCTAGCCTACCCCAACTTG 59.407 45.833 0.00 0.00 0.00 3.16
5146 5186 2.337359 TCTAGCCTACCCCAACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
5147 5187 2.627933 TCTAGCCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 0.00 2.83
5148 5188 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
5149 5189 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
5161 5201 5.213891 CAACTTGTTTGGGATAAAAGGCT 57.786 39.130 0.00 0.00 0.00 4.58
5162 5202 5.610398 CAACTTGTTTGGGATAAAAGGCTT 58.390 37.500 0.00 0.00 0.00 4.35
5163 5203 5.468540 ACTTGTTTGGGATAAAAGGCTTC 57.531 39.130 0.00 0.00 0.00 3.86
5164 5204 4.022329 ACTTGTTTGGGATAAAAGGCTTCG 60.022 41.667 0.00 0.00 0.00 3.79
5165 5205 3.492337 TGTTTGGGATAAAAGGCTTCGT 58.508 40.909 0.00 0.00 0.00 3.85
5166 5206 4.653868 TGTTTGGGATAAAAGGCTTCGTA 58.346 39.130 0.00 0.00 0.00 3.43
5167 5207 5.071370 TGTTTGGGATAAAAGGCTTCGTAA 58.929 37.500 0.00 0.00 0.00 3.18
5168 5208 5.182380 TGTTTGGGATAAAAGGCTTCGTAAG 59.818 40.000 0.00 0.00 0.00 2.34
5169 5209 4.563140 TGGGATAAAAGGCTTCGTAAGT 57.437 40.909 0.00 0.00 39.48 2.24
5170 5210 5.680594 TGGGATAAAAGGCTTCGTAAGTA 57.319 39.130 0.00 0.00 39.48 2.24
5171 5211 6.052405 TGGGATAAAAGGCTTCGTAAGTAA 57.948 37.500 0.00 0.00 39.48 2.24
5172 5212 6.110707 TGGGATAAAAGGCTTCGTAAGTAAG 58.889 40.000 0.00 0.00 39.48 2.34
5173 5213 6.111382 GGGATAAAAGGCTTCGTAAGTAAGT 58.889 40.000 0.00 0.00 39.48 2.24
5174 5214 7.093377 TGGGATAAAAGGCTTCGTAAGTAAGTA 60.093 37.037 0.00 0.00 39.48 2.24
5175 5215 7.765819 GGGATAAAAGGCTTCGTAAGTAAGTAA 59.234 37.037 0.00 0.00 39.48 2.24
5176 5216 8.815189 GGATAAAAGGCTTCGTAAGTAAGTAAG 58.185 37.037 0.00 0.00 39.48 2.34
5177 5217 9.363763 GATAAAAGGCTTCGTAAGTAAGTAAGT 57.636 33.333 0.00 0.00 39.48 2.24
5180 5220 8.754230 AAAGGCTTCGTAAGTAAGTAAGTAAG 57.246 34.615 0.00 0.00 39.48 2.34
5181 5221 7.459795 AGGCTTCGTAAGTAAGTAAGTAAGT 57.540 36.000 0.00 0.00 39.48 2.24
5182 5222 8.567285 AGGCTTCGTAAGTAAGTAAGTAAGTA 57.433 34.615 0.00 0.00 39.48 2.24
5183 5223 9.014297 AGGCTTCGTAAGTAAGTAAGTAAGTAA 57.986 33.333 0.00 0.00 39.48 2.24
5184 5224 9.283420 GGCTTCGTAAGTAAGTAAGTAAGTAAG 57.717 37.037 0.00 0.00 39.48 2.34
5185 5225 8.793472 GCTTCGTAAGTAAGTAAGTAAGTAAGC 58.207 37.037 0.00 0.00 39.48 3.09
5217 5257 6.231211 ACTGATGACCTTCTAATTGAAACGT 58.769 36.000 0.00 0.00 33.79 3.99
5329 5370 9.452287 AGCAAAAACATAAAATGGAATAGCAAT 57.548 25.926 0.00 0.00 33.60 3.56
5343 5384 0.535335 AGCAATGGATTTGGCAGCAG 59.465 50.000 0.00 0.00 35.75 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.351726 GCCATCCGCTAAATAATAGCCG 59.648 50.000 2.15 0.00 37.26 5.52
54 55 2.256306 TGGATAGATGCCATCCGCTAA 58.744 47.619 0.00 0.00 44.27 3.09
162 165 2.376518 TCCCAAAAGCTCTCTCCACATT 59.623 45.455 0.00 0.00 0.00 2.71
192 195 4.019174 CCTCTCACAATAGCAAATTGGGT 58.981 43.478 12.25 0.00 34.26 4.51
223 226 7.398332 ACCAAAGCATCTTCTGATCCTAAAATT 59.602 33.333 0.00 0.00 0.00 1.82
229 232 4.225942 TGTACCAAAGCATCTTCTGATCCT 59.774 41.667 0.00 0.00 0.00 3.24
276 279 5.693555 GCTCATTCTCGATGATCATGTTGTA 59.306 40.000 14.30 0.00 43.59 2.41
305 308 7.611855 TCATACTGAGAGTAGTTCACATCTTGA 59.388 37.037 0.00 0.00 33.66 3.02
354 357 0.108615 CTTTCAGTCCTCCGTCGCAT 60.109 55.000 0.00 0.00 0.00 4.73
366 369 2.629617 CAAAATGAGCCACCCTTTCAGT 59.370 45.455 0.00 0.00 0.00 3.41
380 383 4.098349 GCATGATAGGAGGCAACAAAATGA 59.902 41.667 0.00 0.00 41.41 2.57
414 417 0.033920 AGATCATTATGCGCTGCGGA 59.966 50.000 24.61 22.61 0.00 5.54
450 453 0.482446 TTCCATGCCCACCACTTCTT 59.518 50.000 0.00 0.00 0.00 2.52
453 456 1.203162 TCAATTCCATGCCCACCACTT 60.203 47.619 0.00 0.00 0.00 3.16
471 474 3.317603 TCATGATGCTCTTTGTCGTCA 57.682 42.857 0.00 0.00 33.35 4.35
567 573 9.790389 TCGTTTATTACAATTCAAACAAACAGT 57.210 25.926 4.82 0.00 31.80 3.55
622 628 7.911727 GCATTCAAAAACAGAAGCAAAAAGATT 59.088 29.630 0.00 0.00 0.00 2.40
886 897 0.251634 CCTCCCAGAAGAAGAGGTGC 59.748 60.000 0.00 0.00 41.96 5.01
1074 1085 3.689002 GAAGCAGCTCCGGGAAGGG 62.689 68.421 0.00 0.00 41.52 3.95
1075 1086 2.124942 GAAGCAGCTCCGGGAAGG 60.125 66.667 0.00 0.00 42.97 3.46
1191 1202 2.119611 TCCTTCTCCACCTCGCCA 59.880 61.111 0.00 0.00 0.00 5.69
1233 1244 2.750350 CTCTTGGGCTGGTCCGTT 59.250 61.111 0.00 0.00 34.94 4.44
1291 1302 4.680237 CAGGAGACGCCACCGCAA 62.680 66.667 0.00 0.00 40.02 4.85
1401 1412 3.615811 AGGAGAGCCCCCAGGACA 61.616 66.667 0.00 0.00 34.66 4.02
1533 1544 2.875786 GCTGAAGTAGATGCGGCGC 61.876 63.158 27.44 27.44 0.00 6.53
1863 1874 2.606213 TCCACGCCCTGGACATCA 60.606 61.111 0.00 0.00 44.99 3.07
1887 1898 0.174617 CCTCGACAAGCTCCTCCTTC 59.825 60.000 0.00 0.00 0.00 3.46
1928 1939 9.687210 CAGAAAACAATCATCATGAGAAAGAAA 57.313 29.630 0.09 0.00 0.00 2.52
1934 1945 7.392393 ACATCACAGAAAACAATCATCATGAGA 59.608 33.333 0.09 0.00 0.00 3.27
2001 2027 7.789273 AAACTTGATTGATTGACATTTTGCA 57.211 28.000 0.00 0.00 0.00 4.08
2077 2103 5.069781 AGACCTTACTCTAAGATCCATGTGC 59.930 44.000 0.00 0.00 38.02 4.57
2136 2162 1.292541 GTGAACTCCCAGTCGACCC 59.707 63.158 13.01 0.00 0.00 4.46
2153 2179 7.195646 CCTTTGTATTCGACATATGCAATTGT 58.804 34.615 7.40 4.70 38.07 2.71
2187 2213 3.700038 TCGGGAAAAGTTTAGTTGGCAAA 59.300 39.130 0.00 0.00 0.00 3.68
2210 2236 4.734402 GCAATTTCAATAGAATGCCGCAGA 60.734 41.667 0.00 0.00 34.97 4.26
2211 2237 3.488310 GCAATTTCAATAGAATGCCGCAG 59.512 43.478 0.00 0.00 34.97 5.18
2289 2315 5.180117 GTGCACTGTGTAGAACTTTGATCAT 59.820 40.000 10.32 0.00 0.00 2.45
2343 2370 3.244561 ACAGGAACCACATTGTAGTCCAG 60.245 47.826 12.57 8.51 0.00 3.86
2367 2394 7.519032 AAAAGGGAGAAAACATACGATTTCA 57.481 32.000 0.00 0.00 36.61 2.69
2373 2400 8.293867 TGTGAAATAAAAGGGAGAAAACATACG 58.706 33.333 0.00 0.00 0.00 3.06
2378 2405 7.042051 GGCTTTGTGAAATAAAAGGGAGAAAAC 60.042 37.037 0.00 0.00 34.60 2.43
2382 2409 4.526650 GGGCTTTGTGAAATAAAAGGGAGA 59.473 41.667 0.00 0.00 34.60 3.71
2406 2433 4.411327 CTCGCAGTGTTTTTCTTGAAACA 58.589 39.130 0.00 0.00 44.69 2.83
2416 2443 1.265095 CAGACATGCTCGCAGTGTTTT 59.735 47.619 0.00 0.00 0.00 2.43
2421 2448 0.251354 AATCCAGACATGCTCGCAGT 59.749 50.000 0.00 0.00 0.00 4.40
2423 2450 0.745486 CCAATCCAGACATGCTCGCA 60.745 55.000 0.00 0.00 0.00 5.10
2435 2462 9.465199 CCACATATGTATTCATATTCCAATCCA 57.535 33.333 8.32 0.00 42.51 3.41
2436 2463 9.466497 ACCACATATGTATTCATATTCCAATCC 57.534 33.333 8.32 0.00 42.51 3.01
2439 2466 9.958180 CCTACCACATATGTATTCATATTCCAA 57.042 33.333 8.32 0.00 42.51 3.53
2470 2497 9.667107 AGAAAATTGGAATTCATCTTAGACGTA 57.333 29.630 7.93 0.00 0.00 3.57
2503 2530 6.358178 TGGGTACTTAGTGTCAAAACATCAA 58.642 36.000 0.00 0.00 37.81 2.57
2505 2532 6.870971 TTGGGTACTTAGTGTCAAAACATC 57.129 37.500 0.00 0.00 37.81 3.06
2507 2534 5.766174 GGATTGGGTACTTAGTGTCAAAACA 59.234 40.000 0.00 0.00 0.00 2.83
2508 2535 6.002082 AGGATTGGGTACTTAGTGTCAAAAC 58.998 40.000 0.00 0.00 0.00 2.43
2571 2598 2.213499 GTGTAGGGCATGTATGTGCTC 58.787 52.381 0.00 0.00 46.05 4.26
2582 2609 5.999205 AAAATTTGATGATGTGTAGGGCA 57.001 34.783 0.00 0.00 0.00 5.36
2632 2668 0.179018 GCTGCGGGGATTTATGACCT 60.179 55.000 0.00 0.00 0.00 3.85
2654 2690 6.824196 TGTTAAACAAGATAATATCCCACGCA 59.176 34.615 0.00 0.00 0.00 5.24
2690 2726 3.485463 TCGCTAAATGGGGTAATCCAG 57.515 47.619 0.00 0.00 40.56 3.86
2713 2749 5.429681 AATGGGGTAAAAATAGGCAAACC 57.570 39.130 0.00 0.00 0.00 3.27
2714 2750 6.537301 GCTAAATGGGGTAAAAATAGGCAAAC 59.463 38.462 0.00 0.00 0.00 2.93
2715 2751 6.213600 TGCTAAATGGGGTAAAAATAGGCAAA 59.786 34.615 0.00 0.00 0.00 3.68
2716 2752 5.721960 TGCTAAATGGGGTAAAAATAGGCAA 59.278 36.000 0.00 0.00 0.00 4.52
2717 2753 5.273208 TGCTAAATGGGGTAAAAATAGGCA 58.727 37.500 0.00 0.00 0.00 4.75
2718 2754 5.862678 TGCTAAATGGGGTAAAAATAGGC 57.137 39.130 0.00 0.00 0.00 3.93
2719 2755 8.318412 ACTTTTGCTAAATGGGGTAAAAATAGG 58.682 33.333 0.00 0.00 29.71 2.57
2720 2756 9.719355 AACTTTTGCTAAATGGGGTAAAAATAG 57.281 29.630 0.00 0.00 29.71 1.73
2722 2758 8.988546 AAACTTTTGCTAAATGGGGTAAAAAT 57.011 26.923 0.00 0.00 29.71 1.82
2723 2759 8.678199 CAAAACTTTTGCTAAATGGGGTAAAAA 58.322 29.630 1.30 0.00 29.71 1.94
2724 2760 7.201741 GCAAAACTTTTGCTAAATGGGGTAAAA 60.202 33.333 25.60 0.00 41.87 1.52
2725 2761 6.261158 GCAAAACTTTTGCTAAATGGGGTAAA 59.739 34.615 25.60 0.00 41.87 2.01
2726 2762 5.760743 GCAAAACTTTTGCTAAATGGGGTAA 59.239 36.000 25.60 0.00 41.87 2.85
2727 2763 5.301555 GCAAAACTTTTGCTAAATGGGGTA 58.698 37.500 25.60 0.00 41.87 3.69
2728 2764 4.133820 GCAAAACTTTTGCTAAATGGGGT 58.866 39.130 25.60 0.00 41.87 4.95
2729 2765 3.501828 GGCAAAACTTTTGCTAAATGGGG 59.498 43.478 29.41 0.00 44.36 4.96
2730 2766 4.133078 TGGCAAAACTTTTGCTAAATGGG 58.867 39.130 29.41 0.00 44.36 4.00
2731 2767 5.747951 TTGGCAAAACTTTTGCTAAATGG 57.252 34.783 29.41 0.59 41.71 3.16
2732 2768 8.631676 AAAATTGGCAAAACTTTTGCTAAATG 57.368 26.923 30.19 3.15 46.19 2.32
2733 2769 9.729023 GTAAAATTGGCAAAACTTTTGCTAAAT 57.271 25.926 30.19 25.72 46.19 1.40
2734 2770 8.184848 GGTAAAATTGGCAAAACTTTTGCTAAA 58.815 29.630 30.19 24.99 46.19 1.85
2735 2771 7.201741 GGGTAAAATTGGCAAAACTTTTGCTAA 60.202 33.333 29.24 29.24 46.89 3.09
2736 2772 6.261158 GGGTAAAATTGGCAAAACTTTTGCTA 59.739 34.615 29.41 24.29 44.36 3.49
2737 2773 5.067153 GGGTAAAATTGGCAAAACTTTTGCT 59.933 36.000 29.41 16.50 44.36 3.91
2738 2774 5.277825 GGGTAAAATTGGCAAAACTTTTGC 58.722 37.500 25.11 25.11 44.22 3.68
2739 2775 5.358160 TGGGGTAAAATTGGCAAAACTTTTG 59.642 36.000 16.37 9.54 0.00 2.44
2740 2776 5.510430 TGGGGTAAAATTGGCAAAACTTTT 58.490 33.333 3.01 9.51 0.00 2.27
2741 2777 5.117406 TGGGGTAAAATTGGCAAAACTTT 57.883 34.783 3.01 7.24 0.00 2.66
2742 2778 4.779993 TGGGGTAAAATTGGCAAAACTT 57.220 36.364 3.01 0.39 0.00 2.66
2743 2779 4.991789 ATGGGGTAAAATTGGCAAAACT 57.008 36.364 3.01 0.00 0.00 2.66
2758 2794 4.561326 CGCTCTCAAAATTTTGAATGGGGT 60.561 41.667 28.49 0.00 45.61 4.95
2792 2828 2.159156 GCCATGTATGTGTACCTGACGA 60.159 50.000 0.00 0.00 30.66 4.20
2804 2840 3.133691 ACGACATAGCTTGCCATGTATG 58.866 45.455 6.65 5.73 35.55 2.39
2808 2844 1.739466 ACAACGACATAGCTTGCCATG 59.261 47.619 0.00 0.00 0.00 3.66
2809 2845 2.113860 ACAACGACATAGCTTGCCAT 57.886 45.000 0.00 0.00 0.00 4.40
2810 2846 1.890876 AACAACGACATAGCTTGCCA 58.109 45.000 0.00 0.00 0.00 4.92
2811 2847 2.989422 AAACAACGACATAGCTTGCC 57.011 45.000 0.00 0.00 0.00 4.52
2849 2885 1.966451 GAACTGGTTCAGGCACGGG 60.966 63.158 8.40 0.00 39.31 5.28
2915 2951 2.799207 CGCATCTTGCAGTTGGTTTTGT 60.799 45.455 0.00 0.00 45.36 2.83
2983 3021 0.179166 CAAACGGGTCGAATGGCATG 60.179 55.000 0.00 0.00 0.00 4.06
3014 3052 1.066454 CGCGGTTTTCCTCCTGTTTTT 59.934 47.619 0.00 0.00 37.95 1.94
3015 3053 0.666374 CGCGGTTTTCCTCCTGTTTT 59.334 50.000 0.00 0.00 37.95 2.43
3016 3054 0.179040 TCGCGGTTTTCCTCCTGTTT 60.179 50.000 6.13 0.00 37.95 2.83
3017 3055 0.883370 GTCGCGGTTTTCCTCCTGTT 60.883 55.000 6.13 0.00 37.95 3.16
3018 3056 1.301479 GTCGCGGTTTTCCTCCTGT 60.301 57.895 6.13 0.00 37.95 4.00
3019 3057 0.673644 ATGTCGCGGTTTTCCTCCTG 60.674 55.000 6.13 0.00 37.95 3.86
3033 3071 3.875813 CACGTAATGTGCCATGTCG 57.124 52.632 0.00 9.08 42.70 4.35
3063 3101 3.522553 GAGATCTAAAAGGTGTGTCCCG 58.477 50.000 0.00 0.00 36.75 5.14
3111 3149 1.975660 TTAGCGGAAGTTTTGCTGGT 58.024 45.000 11.74 0.00 39.73 4.00
3116 3154 2.560981 ACCCCATTTAGCGGAAGTTTTG 59.439 45.455 0.00 0.00 0.00 2.44
3154 3192 8.470040 TTTTACACTAATTACTCCAGTTAGCG 57.530 34.615 0.00 0.00 0.00 4.26
3477 3516 3.655211 CCAGGAGGGCCAGCAAGT 61.655 66.667 6.18 0.00 36.29 3.16
3576 3615 4.037923 GCTCCTCTTCCAACAAACATTTCA 59.962 41.667 0.00 0.00 0.00 2.69
3606 3645 4.035675 GCTTCCTTGAATAATTCCCTCACG 59.964 45.833 0.00 0.00 0.00 4.35
3609 3648 4.536765 TGGCTTCCTTGAATAATTCCCTC 58.463 43.478 0.00 0.00 0.00 4.30
4197 4236 7.775397 AGCGATATTTAAATTTGCTTGCAAT 57.225 28.000 5.91 0.00 0.00 3.56
4223 4262 9.512435 CTTTGGAACTCTAAGCATTCATTAATG 57.488 33.333 9.29 9.29 44.53 1.90
4229 4268 5.376625 ACACTTTGGAACTCTAAGCATTCA 58.623 37.500 0.00 0.00 32.66 2.57
4230 4269 5.948992 ACACTTTGGAACTCTAAGCATTC 57.051 39.130 0.00 0.00 32.66 2.67
4398 4437 8.620116 CCAAAACATGGGAAATAGAAAAACAT 57.380 30.769 0.00 0.00 46.27 2.71
4483 4523 9.803507 AATCATCCTCAGAATCTTGCAATAATA 57.196 29.630 0.00 0.00 0.00 0.98
4581 4621 4.506802 GGACCCTTTTGTCTACCATTGACT 60.507 45.833 0.00 0.00 35.54 3.41
4724 4764 8.294577 ACAAATTCGAGTATACCTTGAAAAACC 58.705 33.333 0.00 0.00 44.85 3.27
4806 4846 1.659098 GGCGGAGTTATCAGTTTGTCG 59.341 52.381 0.00 0.00 0.00 4.35
4807 4847 2.973945 AGGCGGAGTTATCAGTTTGTC 58.026 47.619 0.00 0.00 0.00 3.18
4808 4848 4.081087 ACATAGGCGGAGTTATCAGTTTGT 60.081 41.667 0.00 0.00 0.00 2.83
4809 4849 4.442706 ACATAGGCGGAGTTATCAGTTTG 58.557 43.478 0.00 0.00 0.00 2.93
4810 4850 4.406003 AGACATAGGCGGAGTTATCAGTTT 59.594 41.667 0.00 0.00 0.00 2.66
4811 4851 3.961408 AGACATAGGCGGAGTTATCAGTT 59.039 43.478 0.00 0.00 0.00 3.16
4812 4852 3.567397 AGACATAGGCGGAGTTATCAGT 58.433 45.455 0.00 0.00 0.00 3.41
4813 4853 4.279671 AGAAGACATAGGCGGAGTTATCAG 59.720 45.833 0.00 0.00 0.00 2.90
4814 4854 4.215908 AGAAGACATAGGCGGAGTTATCA 58.784 43.478 0.00 0.00 0.00 2.15
4815 4855 4.857509 AGAAGACATAGGCGGAGTTATC 57.142 45.455 0.00 0.00 0.00 1.75
4816 4856 4.767928 CCTAGAAGACATAGGCGGAGTTAT 59.232 45.833 0.00 0.00 33.76 1.89
4817 4857 4.142790 CCTAGAAGACATAGGCGGAGTTA 58.857 47.826 0.00 0.00 33.76 2.24
4818 4858 2.959707 CCTAGAAGACATAGGCGGAGTT 59.040 50.000 0.00 0.00 33.76 3.01
4819 4859 2.588620 CCTAGAAGACATAGGCGGAGT 58.411 52.381 0.00 0.00 33.76 3.85
4825 4865 4.464069 GGCTATGCCTAGAAGACATAGG 57.536 50.000 16.76 0.00 46.69 2.57
4838 4878 2.203209 CTTGGGACCGGCTATGCC 60.203 66.667 0.00 0.00 46.75 4.40
4839 4879 2.902343 GCTTGGGACCGGCTATGC 60.902 66.667 0.00 0.00 0.00 3.14
4840 4880 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
4841 4881 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
4851 4891 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
4852 4892 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
4853 4893 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
4854 4894 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
4855 4895 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
4856 4896 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
4857 4897 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
4858 4898 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
4859 4899 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
4860 4900 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
4861 4901 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
4862 4902 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
4863 4903 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
4864 4904 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
4865 4905 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
4866 4906 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
4867 4907 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
4868 4908 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
4869 4909 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
4870 4910 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
4871 4911 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
4872 4912 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
4873 4913 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
4874 4914 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
4875 4915 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
4876 4916 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
4877 4917 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
4887 4927 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
4888 4928 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
4889 4929 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
4890 4930 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
4891 4931 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
4892 4932 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
4893 4933 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
4894 4934 3.187842 GGACTGGCTAGTTTTTACGTTGG 59.812 47.826 3.47 0.00 37.25 3.77
4895 4935 3.187842 GGGACTGGCTAGTTTTTACGTTG 59.812 47.826 3.47 0.00 37.25 4.10
4896 4936 3.181452 TGGGACTGGCTAGTTTTTACGTT 60.181 43.478 3.47 0.00 37.25 3.99
4897 4937 2.369532 TGGGACTGGCTAGTTTTTACGT 59.630 45.455 3.47 0.00 37.25 3.57
4898 4938 3.048337 TGGGACTGGCTAGTTTTTACG 57.952 47.619 3.47 0.00 37.25 3.18
4899 4939 5.123936 CCTATGGGACTGGCTAGTTTTTAC 58.876 45.833 3.47 0.00 37.25 2.01
4900 4940 4.786454 ACCTATGGGACTGGCTAGTTTTTA 59.214 41.667 3.47 0.00 37.25 1.52
4901 4941 3.591977 ACCTATGGGACTGGCTAGTTTTT 59.408 43.478 3.47 0.00 37.25 1.94
4902 4942 3.190439 ACCTATGGGACTGGCTAGTTTT 58.810 45.455 3.47 0.00 37.25 2.43
4903 4943 2.846950 ACCTATGGGACTGGCTAGTTT 58.153 47.619 3.47 0.00 37.25 2.66
4904 4944 2.570386 ACCTATGGGACTGGCTAGTT 57.430 50.000 3.47 0.00 37.25 2.24
4905 4945 3.142217 TCATACCTATGGGACTGGCTAGT 59.858 47.826 0.69 0.69 35.65 2.57
4906 4946 3.779444 TCATACCTATGGGACTGGCTAG 58.221 50.000 0.25 0.00 34.50 3.42
4907 4947 3.915346 TCATACCTATGGGACTGGCTA 57.085 47.619 0.25 0.00 34.50 3.93
4908 4948 2.795291 TCATACCTATGGGACTGGCT 57.205 50.000 0.25 0.00 34.50 4.75
4909 4949 3.477530 GTTTCATACCTATGGGACTGGC 58.522 50.000 0.25 0.00 34.50 4.85
4910 4950 3.181443 GGGTTTCATACCTATGGGACTGG 60.181 52.174 0.25 0.00 46.86 4.00
4911 4951 3.458118 TGGGTTTCATACCTATGGGACTG 59.542 47.826 0.25 0.00 46.86 3.51
4912 4952 3.743132 TGGGTTTCATACCTATGGGACT 58.257 45.455 0.25 0.00 46.86 3.85
4913 4953 4.724279 ATGGGTTTCATACCTATGGGAC 57.276 45.455 0.25 0.00 45.57 4.46
4914 4954 5.194740 TCAAATGGGTTTCATACCTATGGGA 59.805 40.000 0.25 0.00 46.51 4.37
4915 4955 5.454062 TCAAATGGGTTTCATACCTATGGG 58.546 41.667 0.00 0.00 46.51 4.00
4916 4956 5.010012 GCTCAAATGGGTTTCATACCTATGG 59.990 44.000 0.00 0.00 46.51 2.74
4917 4957 5.277974 CGCTCAAATGGGTTTCATACCTATG 60.278 44.000 0.00 0.00 46.51 2.23
4919 4959 4.080807 TCGCTCAAATGGGTTTCATACCTA 60.081 41.667 0.00 0.00 46.86 3.08
4920 4960 3.016736 CGCTCAAATGGGTTTCATACCT 58.983 45.455 0.00 0.00 46.86 3.08
4921 4961 3.013921 TCGCTCAAATGGGTTTCATACC 58.986 45.455 0.00 0.00 46.99 2.73
4922 4962 3.938963 TCTCGCTCAAATGGGTTTCATAC 59.061 43.478 0.00 0.00 34.44 2.39
4923 4963 4.214986 TCTCGCTCAAATGGGTTTCATA 57.785 40.909 0.00 0.00 34.44 2.15
4924 4964 3.071874 TCTCGCTCAAATGGGTTTCAT 57.928 42.857 0.00 0.00 37.79 2.57
4925 4965 2.559698 TCTCGCTCAAATGGGTTTCA 57.440 45.000 0.00 0.00 0.00 2.69
4926 4966 4.636206 ACTATTCTCGCTCAAATGGGTTTC 59.364 41.667 0.00 0.00 0.00 2.78
4927 4967 4.589908 ACTATTCTCGCTCAAATGGGTTT 58.410 39.130 0.00 0.00 0.00 3.27
4928 4968 4.222124 ACTATTCTCGCTCAAATGGGTT 57.778 40.909 0.00 0.00 0.00 4.11
4929 4969 3.914426 ACTATTCTCGCTCAAATGGGT 57.086 42.857 0.00 0.00 0.00 4.51
4930 4970 4.950050 AGTACTATTCTCGCTCAAATGGG 58.050 43.478 0.00 0.00 0.00 4.00
4931 4971 6.016192 TCCTAGTACTATTCTCGCTCAAATGG 60.016 42.308 2.33 0.00 0.00 3.16
4932 4972 6.971602 TCCTAGTACTATTCTCGCTCAAATG 58.028 40.000 2.33 0.00 0.00 2.32
4933 4973 7.309499 CCATCCTAGTACTATTCTCGCTCAAAT 60.309 40.741 2.33 0.00 0.00 2.32
4934 4974 6.016192 CCATCCTAGTACTATTCTCGCTCAAA 60.016 42.308 2.33 0.00 0.00 2.69
4935 4975 5.473846 CCATCCTAGTACTATTCTCGCTCAA 59.526 44.000 2.33 0.00 0.00 3.02
4936 4976 5.004448 CCATCCTAGTACTATTCTCGCTCA 58.996 45.833 2.33 0.00 0.00 4.26
4937 4977 4.396790 CCCATCCTAGTACTATTCTCGCTC 59.603 50.000 2.33 0.00 0.00 5.03
4938 4978 4.202588 ACCCATCCTAGTACTATTCTCGCT 60.203 45.833 2.33 0.00 0.00 4.93
4939 4979 4.080687 ACCCATCCTAGTACTATTCTCGC 58.919 47.826 2.33 0.00 0.00 5.03
4940 4980 5.181622 GTCACCCATCCTAGTACTATTCTCG 59.818 48.000 2.33 0.00 0.00 4.04
4941 4981 5.477637 GGTCACCCATCCTAGTACTATTCTC 59.522 48.000 2.33 0.00 0.00 2.87
4942 4982 5.136392 AGGTCACCCATCCTAGTACTATTCT 59.864 44.000 2.33 0.00 31.66 2.40
4943 4983 5.395611 AGGTCACCCATCCTAGTACTATTC 58.604 45.833 2.33 0.00 31.66 1.75
4944 4984 5.395611 GAGGTCACCCATCCTAGTACTATT 58.604 45.833 2.33 0.00 33.83 1.73
4945 4985 4.202695 GGAGGTCACCCATCCTAGTACTAT 60.203 50.000 2.33 0.00 33.83 2.12
4946 4986 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
4947 4987 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
4948 4988 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
4949 4989 2.224077 AGGAGGTCACCCATCCTAGTA 58.776 52.381 2.60 0.00 36.91 1.82
4950 4990 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
4951 4991 2.491825 CCTAGGAGGTCACCCATCCTAG 60.492 59.091 24.06 24.06 46.05 3.02
4952 4992 1.503784 CCTAGGAGGTCACCCATCCTA 59.496 57.143 10.74 10.74 38.53 2.94
4953 4993 0.266152 CCTAGGAGGTCACCCATCCT 59.734 60.000 9.58 9.58 39.90 3.24
4954 4994 0.264955 TCCTAGGAGGTCACCCATCC 59.735 60.000 7.62 0.00 36.53 3.51
4955 4995 2.043227 CTTCCTAGGAGGTCACCCATC 58.957 57.143 12.26 0.00 36.53 3.51
4956 4996 1.366435 ACTTCCTAGGAGGTCACCCAT 59.634 52.381 20.38 0.00 36.53 4.00
4957 4997 0.790993 ACTTCCTAGGAGGTCACCCA 59.209 55.000 20.38 0.00 36.53 4.51
4958 4998 1.487300 GACTTCCTAGGAGGTCACCC 58.513 60.000 36.64 18.70 46.32 4.61
4968 5008 8.945486 GAAACCCTTTCACGAGGACTTCCTAG 62.945 50.000 0.00 0.27 42.02 3.02
4969 5009 7.251005 GAAACCCTTTCACGAGGACTTCCTA 62.251 48.000 0.00 0.00 42.02 2.94
4970 5010 6.553615 GAAACCCTTTCACGAGGACTTCCT 62.554 50.000 0.00 0.00 43.41 3.36
4971 5011 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
4972 5012 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
4973 5013 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
4974 5014 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
4975 5015 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
4983 5023 6.890268 ACAACCCTTAGATATGAAACCCTTTC 59.110 38.462 0.00 0.00 40.08 2.62
4984 5024 6.663523 CACAACCCTTAGATATGAAACCCTTT 59.336 38.462 0.00 0.00 0.00 3.11
4985 5025 6.011981 TCACAACCCTTAGATATGAAACCCTT 60.012 38.462 0.00 0.00 0.00 3.95
4986 5026 5.491078 TCACAACCCTTAGATATGAAACCCT 59.509 40.000 0.00 0.00 0.00 4.34
4987 5027 5.751586 TCACAACCCTTAGATATGAAACCC 58.248 41.667 0.00 0.00 0.00 4.11
4988 5028 7.661847 CCTATCACAACCCTTAGATATGAAACC 59.338 40.741 0.00 0.00 0.00 3.27
4989 5029 7.173390 GCCTATCACAACCCTTAGATATGAAAC 59.827 40.741 0.00 0.00 0.00 2.78
4990 5030 7.072454 AGCCTATCACAACCCTTAGATATGAAA 59.928 37.037 0.00 0.00 0.00 2.69
4991 5031 6.558775 AGCCTATCACAACCCTTAGATATGAA 59.441 38.462 0.00 0.00 0.00 2.57
4992 5032 6.084738 AGCCTATCACAACCCTTAGATATGA 58.915 40.000 0.00 0.00 0.00 2.15
4993 5033 6.365970 AGCCTATCACAACCCTTAGATATG 57.634 41.667 0.00 0.00 0.00 1.78
4994 5034 6.295349 CGAAGCCTATCACAACCCTTAGATAT 60.295 42.308 0.00 0.00 0.00 1.63
4995 5035 5.010719 CGAAGCCTATCACAACCCTTAGATA 59.989 44.000 0.00 0.00 0.00 1.98
4996 5036 4.202264 CGAAGCCTATCACAACCCTTAGAT 60.202 45.833 0.00 0.00 0.00 1.98
4997 5037 3.132289 CGAAGCCTATCACAACCCTTAGA 59.868 47.826 0.00 0.00 0.00 2.10
4998 5038 3.458189 CGAAGCCTATCACAACCCTTAG 58.542 50.000 0.00 0.00 0.00 2.18
4999 5039 3.536956 CGAAGCCTATCACAACCCTTA 57.463 47.619 0.00 0.00 0.00 2.69
5000 5040 2.403252 CGAAGCCTATCACAACCCTT 57.597 50.000 0.00 0.00 0.00 3.95
5015 5055 0.509499 TTTTACGTTGGCTCGCGAAG 59.491 50.000 11.33 5.69 0.00 3.79
5016 5056 0.935898 TTTTTACGTTGGCTCGCGAA 59.064 45.000 11.33 0.00 0.00 4.70
5017 5057 0.232816 GTTTTTACGTTGGCTCGCGA 59.767 50.000 9.26 9.26 0.00 5.87
5018 5058 0.233848 AGTTTTTACGTTGGCTCGCG 59.766 50.000 0.00 0.00 0.00 5.87
5019 5059 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
5020 5060 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
5021 5061 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
5022 5062 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
5023 5063 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
5024 5064 4.062991 AGACTGGCTAGTTTTTACGTTGG 58.937 43.478 3.47 0.00 37.25 3.77
5025 5065 5.668558 AAGACTGGCTAGTTTTTACGTTG 57.331 39.130 3.47 0.00 37.25 4.10
5026 5066 6.459161 CCAAAAGACTGGCTAGTTTTTACGTT 60.459 38.462 17.28 1.45 39.50 3.99
5027 5067 5.008316 CCAAAAGACTGGCTAGTTTTTACGT 59.992 40.000 17.28 1.78 39.50 3.57
5028 5068 5.449304 CCAAAAGACTGGCTAGTTTTTACG 58.551 41.667 17.28 12.06 39.50 3.18
5029 5069 5.301045 ACCCAAAAGACTGGCTAGTTTTTAC 59.699 40.000 17.28 0.00 39.50 2.01
5030 5070 5.451354 ACCCAAAAGACTGGCTAGTTTTTA 58.549 37.500 17.28 0.00 39.50 1.52
5031 5071 4.286707 ACCCAAAAGACTGGCTAGTTTTT 58.713 39.130 12.22 12.22 41.44 1.94
5032 5072 3.910989 ACCCAAAAGACTGGCTAGTTTT 58.089 40.909 3.47 1.40 37.25 2.43
5033 5073 3.595190 ACCCAAAAGACTGGCTAGTTT 57.405 42.857 3.47 0.00 37.25 2.66
5034 5074 4.288626 TCATACCCAAAAGACTGGCTAGTT 59.711 41.667 3.47 0.00 37.25 2.24
5035 5075 3.844211 TCATACCCAAAAGACTGGCTAGT 59.156 43.478 0.69 0.69 40.66 2.57
5036 5076 4.487714 TCATACCCAAAAGACTGGCTAG 57.512 45.455 0.00 0.00 34.88 3.42
5037 5077 4.919774 TTCATACCCAAAAGACTGGCTA 57.080 40.909 0.00 0.00 34.88 3.93
5038 5078 3.806949 TTCATACCCAAAAGACTGGCT 57.193 42.857 0.00 0.00 34.88 4.75
5039 5079 3.056821 GGTTTCATACCCAAAAGACTGGC 60.057 47.826 0.00 0.00 41.43 4.85
5040 5080 4.783764 GGTTTCATACCCAAAAGACTGG 57.216 45.455 0.00 0.00 41.43 4.00
5061 5101 2.431057 AGTACTACTCTCGCCCAAATGG 59.569 50.000 0.00 0.00 37.09 3.16
5062 5102 3.802948 AGTACTACTCTCGCCCAAATG 57.197 47.619 0.00 0.00 0.00 2.32
5063 5103 3.890147 CCTAGTACTACTCTCGCCCAAAT 59.110 47.826 0.00 0.00 0.00 2.32
5064 5104 3.054139 TCCTAGTACTACTCTCGCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
5065 5105 2.507058 TCCTAGTACTACTCTCGCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
5066 5106 2.121948 TCCTAGTACTACTCTCGCCCA 58.878 52.381 0.00 0.00 0.00 5.36
5067 5107 2.926778 TCCTAGTACTACTCTCGCCC 57.073 55.000 0.00 0.00 0.00 6.13
5068 5108 3.075884 CCATCCTAGTACTACTCTCGCC 58.924 54.545 0.00 0.00 0.00 5.54
5069 5109 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
5070 5110 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
5071 5111 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
5072 5112 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
5073 5113 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
5074 5114 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
5075 5115 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
5076 5116 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
5077 5117 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
5078 5118 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
5079 5119 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
5080 5120 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
5081 5121 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
5082 5122 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
5083 5123 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
5084 5124 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
5085 5125 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
5086 5126 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
5087 5127 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
5088 5128 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
5089 5129 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
5092 5132 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
5093 5133 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
5094 5134 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
5095 5135 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
5096 5136 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
5097 5137 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
5098 5138 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
5099 5139 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
5100 5140 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
5101 5141 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
5102 5142 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
5103 5143 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
5104 5144 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
5105 5145 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
5113 5153 6.231951 GGTAGGCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
5114 5154 5.073280 GGGTAGGCTAGATATGAAACCCTTT 59.927 44.000 8.73 0.00 41.75 3.11
5115 5155 4.597940 GGGTAGGCTAGATATGAAACCCTT 59.402 45.833 8.73 0.00 41.75 3.95
5116 5156 4.168883 GGGTAGGCTAGATATGAAACCCT 58.831 47.826 8.73 0.00 41.75 4.34
5117 5157 3.263681 GGGGTAGGCTAGATATGAAACCC 59.736 52.174 7.65 7.65 43.82 4.11
5118 5158 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
5119 5159 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
5120 5160 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
5121 5161 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
5122 5162 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
5123 5163 4.348168 ACAAGTTGGGGTAGGCTAGATATG 59.652 45.833 7.96 0.00 0.00 1.78
5124 5164 4.567857 ACAAGTTGGGGTAGGCTAGATAT 58.432 43.478 7.96 0.00 0.00 1.63
5125 5165 4.003584 ACAAGTTGGGGTAGGCTAGATA 57.996 45.455 7.96 0.00 0.00 1.98
5126 5166 2.846950 ACAAGTTGGGGTAGGCTAGAT 58.153 47.619 7.96 0.00 0.00 1.98
5127 5167 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
5128 5168 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
5129 5169 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
5130 5170 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
5139 5179 5.213891 AGCCTTTTATCCCAAACAAGTTG 57.786 39.130 0.00 0.00 36.94 3.16
5140 5180 5.508994 CGAAGCCTTTTATCCCAAACAAGTT 60.509 40.000 0.00 0.00 0.00 2.66
5141 5181 4.022329 CGAAGCCTTTTATCCCAAACAAGT 60.022 41.667 0.00 0.00 0.00 3.16
5142 5182 4.022329 ACGAAGCCTTTTATCCCAAACAAG 60.022 41.667 0.00 0.00 0.00 3.16
5143 5183 3.892588 ACGAAGCCTTTTATCCCAAACAA 59.107 39.130 0.00 0.00 0.00 2.83
5144 5184 3.492337 ACGAAGCCTTTTATCCCAAACA 58.508 40.909 0.00 0.00 0.00 2.83
5145 5185 5.182570 ACTTACGAAGCCTTTTATCCCAAAC 59.817 40.000 0.00 0.00 0.00 2.93
5146 5186 5.318630 ACTTACGAAGCCTTTTATCCCAAA 58.681 37.500 0.00 0.00 0.00 3.28
5147 5187 4.913784 ACTTACGAAGCCTTTTATCCCAA 58.086 39.130 0.00 0.00 0.00 4.12
5148 5188 4.563140 ACTTACGAAGCCTTTTATCCCA 57.437 40.909 0.00 0.00 0.00 4.37
5149 5189 6.111382 ACTTACTTACGAAGCCTTTTATCCC 58.889 40.000 0.00 0.00 0.00 3.85
5150 5190 8.707938 TTACTTACTTACGAAGCCTTTTATCC 57.292 34.615 0.00 0.00 0.00 2.59
5151 5191 9.363763 ACTTACTTACTTACGAAGCCTTTTATC 57.636 33.333 0.00 0.00 0.00 1.75
5154 5194 9.201127 CTTACTTACTTACTTACGAAGCCTTTT 57.799 33.333 0.00 0.00 0.00 2.27
5155 5195 8.363390 ACTTACTTACTTACTTACGAAGCCTTT 58.637 33.333 0.00 0.00 0.00 3.11
5156 5196 7.890515 ACTTACTTACTTACTTACGAAGCCTT 58.109 34.615 0.00 0.00 0.00 4.35
5157 5197 7.459795 ACTTACTTACTTACTTACGAAGCCT 57.540 36.000 0.00 0.00 0.00 4.58
5158 5198 9.283420 CTTACTTACTTACTTACTTACGAAGCC 57.717 37.037 0.00 0.00 0.00 4.35
5159 5199 8.793472 GCTTACTTACTTACTTACTTACGAAGC 58.207 37.037 0.00 0.00 0.00 3.86
5162 5202 8.383619 CGAGCTTACTTACTTACTTACTTACGA 58.616 37.037 0.00 0.00 0.00 3.43
5163 5203 8.383619 TCGAGCTTACTTACTTACTTACTTACG 58.616 37.037 0.00 0.00 0.00 3.18
5164 5204 9.484326 GTCGAGCTTACTTACTTACTTACTTAC 57.516 37.037 0.00 0.00 0.00 2.34
5165 5205 9.219603 TGTCGAGCTTACTTACTTACTTACTTA 57.780 33.333 0.00 0.00 0.00 2.24
5166 5206 8.103948 TGTCGAGCTTACTTACTTACTTACTT 57.896 34.615 0.00 0.00 0.00 2.24
5167 5207 7.678947 TGTCGAGCTTACTTACTTACTTACT 57.321 36.000 0.00 0.00 0.00 2.24
5168 5208 8.634265 GTTTGTCGAGCTTACTTACTTACTTAC 58.366 37.037 0.00 0.00 0.00 2.34
5169 5209 8.571336 AGTTTGTCGAGCTTACTTACTTACTTA 58.429 33.333 0.00 0.00 0.00 2.24
5170 5210 7.381678 CAGTTTGTCGAGCTTACTTACTTACTT 59.618 37.037 0.00 0.00 0.00 2.24
5171 5211 6.862090 CAGTTTGTCGAGCTTACTTACTTACT 59.138 38.462 0.00 0.00 0.00 2.24
5172 5212 6.860023 TCAGTTTGTCGAGCTTACTTACTTAC 59.140 38.462 0.00 0.00 0.00 2.34
5173 5213 6.973843 TCAGTTTGTCGAGCTTACTTACTTA 58.026 36.000 0.00 0.00 0.00 2.24
5174 5214 5.839621 TCAGTTTGTCGAGCTTACTTACTT 58.160 37.500 0.00 0.00 0.00 2.24
5175 5215 5.449107 TCAGTTTGTCGAGCTTACTTACT 57.551 39.130 0.00 0.00 0.00 2.24
5176 5216 5.862323 TCATCAGTTTGTCGAGCTTACTTAC 59.138 40.000 0.00 0.00 0.00 2.34
5177 5217 5.862323 GTCATCAGTTTGTCGAGCTTACTTA 59.138 40.000 0.00 0.00 0.00 2.24
5178 5218 4.686554 GTCATCAGTTTGTCGAGCTTACTT 59.313 41.667 0.00 0.00 0.00 2.24
5179 5219 4.238514 GTCATCAGTTTGTCGAGCTTACT 58.761 43.478 0.00 0.00 0.00 2.24
5180 5220 3.368236 GGTCATCAGTTTGTCGAGCTTAC 59.632 47.826 0.00 0.00 0.00 2.34
5181 5221 3.258372 AGGTCATCAGTTTGTCGAGCTTA 59.742 43.478 0.00 0.00 30.67 3.09
5182 5222 2.037772 AGGTCATCAGTTTGTCGAGCTT 59.962 45.455 0.00 0.00 30.67 3.74
5183 5223 1.620819 AGGTCATCAGTTTGTCGAGCT 59.379 47.619 0.00 0.00 0.00 4.09
5184 5224 2.086054 AGGTCATCAGTTTGTCGAGC 57.914 50.000 0.00 0.00 0.00 5.03
5185 5225 3.919216 AGAAGGTCATCAGTTTGTCGAG 58.081 45.455 0.00 0.00 0.00 4.04
5186 5226 5.462530 TTAGAAGGTCATCAGTTTGTCGA 57.537 39.130 0.00 0.00 0.00 4.20
5187 5227 6.368791 TCAATTAGAAGGTCATCAGTTTGTCG 59.631 38.462 0.00 0.00 0.00 4.35
5329 5370 1.885887 GTTGTACTGCTGCCAAATCCA 59.114 47.619 0.00 0.00 0.00 3.41
5384 5426 6.876789 TGAGCACTCCAGATAAACGAAATAAA 59.123 34.615 0.00 0.00 0.00 1.40
5400 5442 2.999355 GTCATCTGAAGTTGAGCACTCC 59.001 50.000 0.00 0.00 32.94 3.85
5580 6677 5.128499 AGGTGTCATGAACAAACCAAATGAA 59.872 36.000 16.27 0.00 40.31 2.57
5634 6731 3.942130 AGTGCCAGCCTTATTTCAAAC 57.058 42.857 0.00 0.00 0.00 2.93
5678 6775 4.454504 CACAATACCTAACCTCAACACACC 59.545 45.833 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.