Multiple sequence alignment - TraesCS2A01G331700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G331700 chr2A 100.000 5174 0 0 1 5174 564611019 564616192 0.000000e+00 9555.0
1 TraesCS2A01G331700 chr2A 80.783 281 41 6 4901 5169 719215605 719215326 1.890000e-49 207.0
2 TraesCS2A01G331700 chr2A 84.545 110 15 2 2284 2392 581567305 581567413 1.970000e-19 108.0
3 TraesCS2A01G331700 chr2A 86.667 90 12 0 2301 2390 676448500 676448411 3.300000e-17 100.0
4 TraesCS2A01G331700 chr2D 92.492 1585 74 19 3214 4763 423861703 423860129 0.000000e+00 2226.0
5 TraesCS2A01G331700 chr2D 96.170 966 24 5 689 1641 423865344 423864379 0.000000e+00 1567.0
6 TraesCS2A01G331700 chr2D 88.148 675 70 5 2420 3085 645316735 645316062 0.000000e+00 795.0
7 TraesCS2A01G331700 chr2D 85.443 632 64 16 2 615 423865979 423865358 2.630000e-177 632.0
8 TraesCS2A01G331700 chr2D 84.420 629 42 27 1638 2226 423864142 423863530 7.520000e-158 568.0
9 TraesCS2A01G331700 chr2D 83.033 389 45 16 2041 2414 423863634 423863252 2.990000e-87 333.0
10 TraesCS2A01G331700 chr2D 88.652 141 8 2 3089 3223 423863244 423863106 1.150000e-36 165.0
11 TraesCS2A01G331700 chr2D 88.060 134 16 0 2281 2414 542064180 542064313 5.360000e-35 159.0
12 TraesCS2A01G331700 chr2D 85.556 90 3 1 4813 4902 423860048 423859969 9.230000e-13 86.1
13 TraesCS2A01G331700 chr2B 95.465 1257 48 7 3214 4464 497801520 497800267 0.000000e+00 1997.0
14 TraesCS2A01G331700 chr2B 94.547 917 26 4 770 1676 497803855 497802953 0.000000e+00 1395.0
15 TraesCS2A01G331700 chr2B 88.850 574 51 6 3228 3798 632387201 632386638 0.000000e+00 693.0
16 TraesCS2A01G331700 chr2B 87.544 570 58 6 3228 3795 98397978 98398536 0.000000e+00 647.0
17 TraesCS2A01G331700 chr2B 81.650 703 85 25 1 692 497805228 497804559 1.270000e-150 544.0
18 TraesCS2A01G331700 chr2B 94.488 127 5 1 1673 1799 497801674 497801550 1.470000e-45 195.0
19 TraesCS2A01G331700 chr2B 80.952 126 24 0 2265 2390 800482891 800483016 3.300000e-17 100.0
20 TraesCS2A01G331700 chr2B 100.000 42 0 0 4815 4856 497800268 497800227 1.540000e-10 78.7
21 TraesCS2A01G331700 chr5D 89.614 674 61 5 2419 3085 62529900 62530571 0.000000e+00 848.0
22 TraesCS2A01G331700 chr5D 87.794 680 72 7 2413 3085 556094176 556093501 0.000000e+00 785.0
23 TraesCS2A01G331700 chr5D 79.381 291 41 13 4895 5170 448662909 448663195 2.460000e-43 187.0
24 TraesCS2A01G331700 chr4A 89.466 674 59 8 2419 3085 717817298 717816630 0.000000e+00 841.0
25 TraesCS2A01G331700 chr4A 91.954 87 7 0 1845 1931 90430857 90430943 7.040000e-24 122.0
26 TraesCS2A01G331700 chr4A 80.000 145 20 7 556 693 552710184 552710042 1.190000e-16 99.0
27 TraesCS2A01G331700 chr4A 83.951 81 12 1 1845 1924 647841707 647841627 5.560000e-10 76.8
28 TraesCS2A01G331700 chr4D 88.690 672 69 4 2420 3085 354114869 354115539 0.000000e+00 813.0
29 TraesCS2A01G331700 chr4D 92.771 83 6 0 3112 3194 39358775 39358693 2.530000e-23 121.0
30 TraesCS2A01G331700 chr4D 80.952 105 16 4 3089 3191 431556767 431556665 4.290000e-11 80.5
31 TraesCS2A01G331700 chr6D 88.444 675 65 9 2419 3085 5070215 5069546 0.000000e+00 802.0
32 TraesCS2A01G331700 chr6D 89.530 468 43 5 3227 3693 178681509 178681971 5.770000e-164 588.0
33 TraesCS2A01G331700 chr6D 91.597 119 10 0 3730 3848 178681966 178682084 1.150000e-36 165.0
34 TraesCS2A01G331700 chr5A 88.571 665 69 3 2416 3073 288257694 288258358 0.000000e+00 800.0
35 TraesCS2A01G331700 chr3D 88.473 668 64 9 2417 3076 156891112 156890450 0.000000e+00 795.0
36 TraesCS2A01G331700 chr3D 91.667 48 3 1 1884 1930 290858782 290858829 1.200000e-06 65.8
37 TraesCS2A01G331700 chr3B 88.201 678 65 11 2415 3085 775734316 775734985 0.000000e+00 795.0
38 TraesCS2A01G331700 chr3B 82.595 316 39 12 4466 4769 809182268 809182579 1.100000e-66 265.0
39 TraesCS2A01G331700 chr3B 77.273 176 27 8 530 692 540686427 540686252 1.980000e-14 91.6
40 TraesCS2A01G331700 chr3B 79.259 135 17 8 567 692 734164130 734164262 3.320000e-12 84.2
41 TraesCS2A01G331700 chr3B 91.667 48 3 1 1884 1930 383707095 383707142 1.200000e-06 65.8
42 TraesCS2A01G331700 chr3B 91.111 45 4 0 1845 1889 5070822 5070866 1.560000e-05 62.1
43 TraesCS2A01G331700 chr5B 87.895 570 53 8 3228 3795 491817466 491818021 0.000000e+00 656.0
44 TraesCS2A01G331700 chr5B 82.540 315 44 9 4466 4772 36079473 36079162 3.070000e-67 267.0
45 TraesCS2A01G331700 chr1D 87.566 571 55 9 3228 3795 211946003 211945446 0.000000e+00 647.0
46 TraesCS2A01G331700 chr1D 87.544 570 57 7 3228 3795 291784534 291785091 0.000000e+00 647.0
47 TraesCS2A01G331700 chr1D 84.874 119 16 2 2276 2394 452253796 452253680 9.100000e-23 119.0
48 TraesCS2A01G331700 chr6B 88.889 468 46 5 3227 3693 169156353 169156815 5.810000e-159 571.0
49 TraesCS2A01G331700 chr6B 83.333 312 43 8 4466 4772 701069525 701069218 3.950000e-71 279.0
50 TraesCS2A01G331700 chr6B 83.013 312 44 8 4466 4772 701071330 701071023 1.840000e-69 274.0
51 TraesCS2A01G331700 chr6B 82.748 313 38 12 4466 4769 528908220 528908525 1.100000e-66 265.0
52 TraesCS2A01G331700 chr3A 86.408 309 24 11 4472 4776 612766453 612766747 6.460000e-84 322.0
53 TraesCS2A01G331700 chr3A 84.177 158 24 1 2257 2414 625566154 625565998 8.970000e-33 152.0
54 TraesCS2A01G331700 chr3A 75.745 235 48 7 462 693 66178093 66177865 5.480000e-20 110.0
55 TraesCS2A01G331700 chr3A 88.889 54 6 0 1845 1898 7130576 7130523 3.340000e-07 67.6
56 TraesCS2A01G331700 chr3A 89.583 48 4 1 1884 1930 383694462 383694509 5.600000e-05 60.2
57 TraesCS2A01G331700 chr7B 81.586 353 49 12 4463 4803 481349017 481348669 1.420000e-70 278.0
58 TraesCS2A01G331700 chr7B 91.045 134 9 2 2281 2414 399171572 399171702 1.480000e-40 178.0
59 TraesCS2A01G331700 chr7B 80.952 147 15 9 554 693 434828370 434828510 2.550000e-18 104.0
60 TraesCS2A01G331700 chr4B 83.067 313 41 11 4465 4769 633150028 633150336 1.840000e-69 274.0
61 TraesCS2A01G331700 chr4B 93.827 81 5 0 3114 3194 57794322 57794402 7.040000e-24 122.0
62 TraesCS2A01G331700 chr4B 77.665 197 34 10 474 663 2466818 2467011 1.520000e-20 111.0
63 TraesCS2A01G331700 chr4B 82.308 130 20 3 2264 2392 567002512 567002639 5.480000e-20 110.0
64 TraesCS2A01G331700 chr4B 83.784 111 14 4 3086 3194 427262525 427262633 9.170000e-18 102.0
65 TraesCS2A01G331700 chr1B 81.272 283 38 8 4901 5170 106767543 106767263 1.130000e-51 215.0
66 TraesCS2A01G331700 chr1B 81.481 243 33 4 1846 2085 566280878 566280645 6.840000e-44 189.0
67 TraesCS2A01G331700 chr1B 87.273 55 6 1 1845 1898 14186155 14186101 1.560000e-05 62.1
68 TraesCS2A01G331700 chr1B 84.746 59 8 1 1845 1902 573066742 573066684 2.010000e-04 58.4
69 TraesCS2A01G331700 chrUn 87.963 108 13 0 3086 3193 69778908 69779015 1.510000e-25 128.0
70 TraesCS2A01G331700 chrUn 77.358 212 25 13 503 693 112606812 112606603 2.550000e-18 104.0
71 TraesCS2A01G331700 chr7D 80.220 182 27 7 503 677 418919352 418919531 1.510000e-25 128.0
72 TraesCS2A01G331700 chr7A 91.667 48 4 0 1845 1892 589243136 589243089 3.340000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G331700 chr2A 564611019 564616192 5173 False 9555.000000 9555 100.000000 1 5174 1 chr2A.!!$F1 5173
1 TraesCS2A01G331700 chr2D 423859969 423865979 6010 True 796.728571 2226 87.966571 2 4902 7 chr2D.!!$R2 4900
2 TraesCS2A01G331700 chr2D 645316062 645316735 673 True 795.000000 795 88.148000 2420 3085 1 chr2D.!!$R1 665
3 TraesCS2A01G331700 chr2B 497800227 497805228 5001 True 841.940000 1997 93.230000 1 4856 5 chr2B.!!$R2 4855
4 TraesCS2A01G331700 chr2B 632386638 632387201 563 True 693.000000 693 88.850000 3228 3798 1 chr2B.!!$R1 570
5 TraesCS2A01G331700 chr2B 98397978 98398536 558 False 647.000000 647 87.544000 3228 3795 1 chr2B.!!$F1 567
6 TraesCS2A01G331700 chr5D 62529900 62530571 671 False 848.000000 848 89.614000 2419 3085 1 chr5D.!!$F1 666
7 TraesCS2A01G331700 chr5D 556093501 556094176 675 True 785.000000 785 87.794000 2413 3085 1 chr5D.!!$R1 672
8 TraesCS2A01G331700 chr4A 717816630 717817298 668 True 841.000000 841 89.466000 2419 3085 1 chr4A.!!$R3 666
9 TraesCS2A01G331700 chr4D 354114869 354115539 670 False 813.000000 813 88.690000 2420 3085 1 chr4D.!!$F1 665
10 TraesCS2A01G331700 chr6D 5069546 5070215 669 True 802.000000 802 88.444000 2419 3085 1 chr6D.!!$R1 666
11 TraesCS2A01G331700 chr6D 178681509 178682084 575 False 376.500000 588 90.563500 3227 3848 2 chr6D.!!$F1 621
12 TraesCS2A01G331700 chr5A 288257694 288258358 664 False 800.000000 800 88.571000 2416 3073 1 chr5A.!!$F1 657
13 TraesCS2A01G331700 chr3D 156890450 156891112 662 True 795.000000 795 88.473000 2417 3076 1 chr3D.!!$R1 659
14 TraesCS2A01G331700 chr3B 775734316 775734985 669 False 795.000000 795 88.201000 2415 3085 1 chr3B.!!$F4 670
15 TraesCS2A01G331700 chr5B 491817466 491818021 555 False 656.000000 656 87.895000 3228 3795 1 chr5B.!!$F1 567
16 TraesCS2A01G331700 chr1D 211945446 211946003 557 True 647.000000 647 87.566000 3228 3795 1 chr1D.!!$R1 567
17 TraesCS2A01G331700 chr1D 291784534 291785091 557 False 647.000000 647 87.544000 3228 3795 1 chr1D.!!$F1 567
18 TraesCS2A01G331700 chr6B 701069218 701071330 2112 True 276.500000 279 83.173000 4466 4772 2 chr6B.!!$R1 306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 332 0.318699 TACTCGCATATGTCGGCTGC 60.319 55.0 16.01 0.00 0.00 5.25 F
492 510 0.447801 CGAGTTCAAATGCTTCCCGG 59.552 55.0 0.00 0.00 0.00 5.73 F
2122 4337 1.045911 GGGGAGGAGTAGCTGACAGG 61.046 65.0 4.26 0.00 0.00 4.00 F
2133 4348 1.297456 GCTGACAGGAGCAGAAGCAC 61.297 60.0 4.26 0.00 45.49 4.40 F
3795 7546 0.762842 TGATTCCCCGGACCGATGAT 60.763 55.0 17.49 3.52 0.00 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2104 4319 0.033011 TCCTGTCAGCTACTCCTCCC 60.033 60.0 0.00 0.0 0.00 4.30 R
2397 4699 0.182775 AAAATCCTCCGGCGCCTATT 59.817 50.0 26.68 12.8 0.00 1.73 R
3170 5495 0.179054 GGCCAACTCTAACCGATCCC 60.179 60.0 0.00 0.0 0.00 3.85 R
4011 7762 0.409484 AGCCAGTAAACCCAGCCATT 59.591 50.0 0.00 0.0 0.00 3.16 R
4983 10604 0.034670 AAGCACCTGCCTTGAGGATC 60.035 55.0 0.06 0.0 43.38 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.416083 GGTAAGTGGACAAATAATTTGGGC 58.584 41.667 0.00 0.00 44.81 5.36
51 52 5.675684 AATAATTTGGGCCAGTCGATTTT 57.324 34.783 6.23 0.00 0.00 1.82
102 103 5.437060 GGTCATATGGCTTTCTTCAACCTA 58.563 41.667 7.36 0.00 0.00 3.08
121 122 4.589374 ACCTAGTATTCATCTTCTTCCCCG 59.411 45.833 0.00 0.00 0.00 5.73
132 134 2.204013 TTCCCCGACCACCCATGA 60.204 61.111 0.00 0.00 0.00 3.07
146 148 1.467678 CCATGAACCACCGGCCAAAA 61.468 55.000 0.00 0.00 0.00 2.44
222 227 1.531748 CACCCTTACCGCCATCCAT 59.468 57.895 0.00 0.00 0.00 3.41
262 276 1.760613 CCCGACCATGCCTCTAAACTA 59.239 52.381 0.00 0.00 0.00 2.24
306 320 5.856126 AATCGTCAAATTTCTTACTCGCA 57.144 34.783 0.00 0.00 0.00 5.10
314 328 5.907197 AATTTCTTACTCGCATATGTCGG 57.093 39.130 16.01 10.89 0.00 4.79
318 332 0.318699 TACTCGCATATGTCGGCTGC 60.319 55.000 16.01 0.00 0.00 5.25
319 333 1.300465 CTCGCATATGTCGGCTGCT 60.300 57.895 16.01 0.00 33.75 4.24
390 408 1.202964 TCGTCACCTACTTCTCCACCA 60.203 52.381 0.00 0.00 0.00 4.17
402 420 6.844097 ACTTCTCCACCAAAACAACTAAAA 57.156 33.333 0.00 0.00 0.00 1.52
455 473 2.573941 AACCGACACCTAATACTCGC 57.426 50.000 0.00 0.00 0.00 5.03
477 495 1.202200 GCGAAGTATGTGCTCTCGAGT 60.202 52.381 13.13 0.00 0.00 4.18
487 505 2.481952 GTGCTCTCGAGTTCAAATGCTT 59.518 45.455 13.13 0.00 0.00 3.91
492 510 0.447801 CGAGTTCAAATGCTTCCCGG 59.552 55.000 0.00 0.00 0.00 5.73
506 524 4.282195 TGCTTCCCGGTGAACAATAAAATT 59.718 37.500 0.00 0.00 0.00 1.82
575 594 8.772705 TGTTCTTGCAAAAATTATCATGAAACC 58.227 29.630 0.00 0.00 0.00 3.27
590 609 4.974368 TGAAACCACATTCGTGAAAGTT 57.026 36.364 0.00 0.00 46.80 2.66
592 611 2.774439 ACCACATTCGTGAAAGTTGC 57.226 45.000 0.00 0.00 46.80 4.17
639 658 7.798596 TGCTATTTTTGAAAGCATTTTGGAA 57.201 28.000 0.00 0.00 39.27 3.53
640 659 8.393671 TGCTATTTTTGAAAGCATTTTGGAAT 57.606 26.923 0.00 0.00 39.27 3.01
720 821 2.208431 CTGTTCATCCCGAGCTCATTC 58.792 52.381 15.40 0.00 0.00 2.67
725 826 2.960957 ATCCCGAGCTCATTCGTGCG 62.961 60.000 15.40 0.00 38.88 5.34
740 841 3.207452 TGCGGAGGAGCAGAAGATA 57.793 52.632 0.00 0.00 42.92 1.98
750 851 3.262420 GAGCAGAAGATAACTTTCGCCA 58.738 45.455 4.41 0.00 36.39 5.69
797 1442 3.239254 GTTTACGTGGCCATTTGTTAGC 58.761 45.455 9.72 0.59 0.00 3.09
885 1530 2.333014 CTGTCAACTTCGAGAAGCTCC 58.667 52.381 12.32 0.33 41.99 4.70
891 1537 1.070758 ACTTCGAGAAGCTCCAAGCAA 59.929 47.619 12.32 0.00 45.56 3.91
932 1578 1.539157 CCCTCCCTTTCAGCTTTCAC 58.461 55.000 0.00 0.00 0.00 3.18
1228 1884 1.801913 CACGCCTTCTTCGACCTCG 60.802 63.158 0.00 0.00 41.45 4.63
1650 2546 4.024048 AGACAGTGATTACTTGCAAAACCG 60.024 41.667 0.00 0.00 34.07 4.44
1749 3925 7.877003 TGTTCAAAGTTGCGATTTAAAGGATA 58.123 30.769 0.00 0.00 0.00 2.59
1819 3996 2.091885 GGGCATTTCTAACAGATCCCCA 60.092 50.000 0.00 0.00 0.00 4.96
1820 3997 3.437052 GGGCATTTCTAACAGATCCCCAT 60.437 47.826 0.00 0.00 0.00 4.00
1821 3998 3.823304 GGCATTTCTAACAGATCCCCATC 59.177 47.826 0.00 0.00 0.00 3.51
1822 3999 3.823304 GCATTTCTAACAGATCCCCATCC 59.177 47.826 0.00 0.00 0.00 3.51
1823 4000 3.838244 TTTCTAACAGATCCCCATCCG 57.162 47.619 0.00 0.00 0.00 4.18
1872 4064 2.210711 GGACCTAGCCGATCCCCTG 61.211 68.421 0.00 0.00 0.00 4.45
1873 4065 1.457831 GACCTAGCCGATCCCCTGT 60.458 63.158 0.00 0.00 0.00 4.00
1874 4066 1.749334 GACCTAGCCGATCCCCTGTG 61.749 65.000 0.00 0.00 0.00 3.66
1881 4073 1.692519 GCCGATCCCCTGTGTATAACT 59.307 52.381 0.00 0.00 0.00 2.24
1914 4106 4.985413 ACATTTGGCTCATACATTTCGTG 58.015 39.130 0.00 0.00 0.00 4.35
1947 4139 2.282180 AACCATGGTGACCACGCC 60.282 61.111 20.60 0.00 45.91 5.68
1954 4146 4.101790 GTGACCACGCCGGCAATG 62.102 66.667 28.98 23.21 39.03 2.82
2003 4195 3.112709 GGACGTCGCACTTCTGCC 61.113 66.667 9.92 0.00 40.73 4.85
2008 4200 2.666190 TCGCACTTCTGCCTGCAC 60.666 61.111 0.00 0.00 40.73 4.57
2098 4313 3.048475 AGCAGCAGCAGAAGCACG 61.048 61.111 3.17 0.00 45.49 5.34
2116 4331 2.443016 CAGCGGGGAGGAGTAGCT 60.443 66.667 0.00 0.00 38.90 3.32
2118 4333 2.442272 GCGGGGAGGAGTAGCTGA 60.442 66.667 0.00 0.00 0.00 4.26
2122 4337 1.045911 GGGGAGGAGTAGCTGACAGG 61.046 65.000 4.26 0.00 0.00 4.00
2133 4348 1.297456 GCTGACAGGAGCAGAAGCAC 61.297 60.000 4.26 0.00 45.49 4.40
2156 4371 2.438075 GGGGAGAAGCAGCAGCAG 60.438 66.667 3.17 0.00 45.49 4.24
2240 4542 4.193893 AGCAGCACACAGTGGCCA 62.194 61.111 0.00 0.00 33.64 5.36
2308 4610 1.446272 CCGTCGACAAGGGAGCTTC 60.446 63.158 17.16 0.00 34.67 3.86
2363 4665 7.657354 GCCTTTGTGTGAAGAAAATTTATCCTT 59.343 33.333 0.00 0.00 0.00 3.36
2365 4667 7.945033 TTGTGTGAAGAAAATTTATCCTTGC 57.055 32.000 0.00 0.00 0.00 4.01
2368 4670 5.102313 GTGAAGAAAATTTATCCTTGCCCG 58.898 41.667 0.00 0.00 0.00 6.13
2378 4680 4.020617 CTTGCCCGCCTCCAGACA 62.021 66.667 0.00 0.00 0.00 3.41
2393 4695 6.315714 CCTCCAGACAGAGTATATTTAGGGA 58.684 44.000 0.00 0.00 31.53 4.20
2397 4699 8.010697 TCCAGACAGAGTATATTTAGGGATTGA 58.989 37.037 0.00 0.00 0.00 2.57
2405 4707 7.048512 AGTATATTTAGGGATTGAATAGGCGC 58.951 38.462 0.00 0.00 0.00 6.53
2571 4875 4.016706 CCGCCGTCTTCACCCCTT 62.017 66.667 0.00 0.00 0.00 3.95
2572 4876 2.742372 CGCCGTCTTCACCCCTTG 60.742 66.667 0.00 0.00 0.00 3.61
2575 4879 1.672356 CCGTCTTCACCCCTTGCTG 60.672 63.158 0.00 0.00 0.00 4.41
2649 4953 2.203015 CCCCATAGGACCAACGCG 60.203 66.667 3.53 3.53 38.24 6.01
2868 5179 3.136626 CGGGGAGAACCTTATTCCATCTT 59.863 47.826 0.00 0.00 40.03 2.40
2907 5221 1.881903 CGCCTCTCTGAGCAGGACAA 61.882 60.000 20.40 0.00 30.32 3.18
3087 5406 5.351740 CCTCTTTCTTTCCGTGGAAGAATAC 59.648 44.000 7.83 0.00 35.38 1.89
3099 5418 5.070580 CGTGGAAGAATACCCTCCTCTATTT 59.929 44.000 0.00 0.00 0.00 1.40
3105 5424 8.401955 AAGAATACCCTCCTCTATTTGGTTTA 57.598 34.615 0.00 0.00 0.00 2.01
3144 5469 2.093128 GGCATAGAGGAGGAAAACCGAA 60.093 50.000 0.00 0.00 0.00 4.30
3145 5470 3.433740 GGCATAGAGGAGGAAAACCGAAT 60.434 47.826 0.00 0.00 0.00 3.34
3148 5473 5.820947 GCATAGAGGAGGAAAACCGAATTTA 59.179 40.000 0.00 0.00 0.00 1.40
3170 5495 3.698289 TCGTCCCTTATAGCTGGATAGG 58.302 50.000 0.00 0.00 0.00 2.57
3328 7067 8.032451 GCCTTGATCTTACTATCCTATCTGAAC 58.968 40.741 0.00 0.00 0.00 3.18
3344 7083 7.941238 CCTATCTGAACATCCCTTTTATGACAT 59.059 37.037 0.00 0.00 0.00 3.06
3354 7093 5.476599 TCCCTTTTATGACATTTCACAGGTG 59.523 40.000 0.00 0.00 33.38 4.00
3447 7186 4.570926 TGAGGATCTCCATTACAGGGATT 58.429 43.478 0.00 0.00 38.89 3.01
3453 7192 8.663352 GGATCTCCATTACAGGGATTCCCAAG 62.663 50.000 23.85 17.11 40.37 3.61
3489 7234 1.775385 TCGGCATCATAGACAGGTCA 58.225 50.000 1.84 0.00 0.00 4.02
3585 7330 1.742761 ATGGCATCGGTCTTGTCAAG 58.257 50.000 6.21 6.21 31.53 3.02
3714 7460 1.672145 GGCCTGTTCGAGTTCCTGTAC 60.672 57.143 0.00 0.00 0.00 2.90
3768 7519 3.741476 GTTGCTGAAGGCGCTGGG 61.741 66.667 7.64 0.00 45.43 4.45
3789 7540 1.223763 GGAGTTGATTCCCCGGACC 59.776 63.158 0.73 0.00 0.00 4.46
3795 7546 0.762842 TGATTCCCCGGACCGATGAT 60.763 55.000 17.49 3.52 0.00 2.45
4023 7774 2.681422 CATGGGATAATGGCTGGGTTT 58.319 47.619 0.00 0.00 0.00 3.27
4175 7926 4.464947 CCTGATTTCCTAAAGCCCTAAGG 58.535 47.826 0.00 0.00 0.00 2.69
4304 8067 4.156556 TCAATAAGGCATCAGTGAGTTTGC 59.843 41.667 8.42 8.42 0.00 3.68
4337 8100 6.136071 GTGTATGTCTGCAAAGTTGTTGTAG 58.864 40.000 0.00 0.00 34.16 2.74
4352 8115 9.439500 AAGTTGTTGTAGTTCTGTTGTAAGTAA 57.561 29.630 0.00 0.00 0.00 2.24
4400 8163 3.445096 GCATGAAATGGTGTTTAGAGGCT 59.555 43.478 0.00 0.00 46.86 4.58
4459 8222 9.768662 ATCTTGTTTTCAAATTTCAACTAGCAT 57.231 25.926 9.29 4.59 39.47 3.79
4474 8250 1.126488 AGCATCTGACGGACATGGAT 58.874 50.000 0.00 0.00 0.00 3.41
4586 10171 8.370493 TGACAAACATTGACAAAAGTTTTCAA 57.630 26.923 15.43 5.43 35.58 2.69
4587 10172 8.279103 TGACAAACATTGACAAAAGTTTTCAAC 58.721 29.630 15.43 9.93 35.58 3.18
4725 10315 3.120546 CCACAGCTCTACAAATGTCGTTG 60.121 47.826 0.00 0.00 34.52 4.10
4757 10347 4.576106 TTTTGCAAGCGTTGAAAACTTC 57.424 36.364 0.00 0.00 46.99 3.01
4759 10349 4.624336 TTGCAAGCGTTGAAAACTTCTA 57.376 36.364 0.00 0.00 46.99 2.10
4769 10359 7.379529 AGCGTTGAAAACTTCTATCAATGTTTG 59.620 33.333 8.28 0.00 46.99 2.93
4772 10362 9.515020 GTTGAAAACTTCTATCAATGTTTGTCA 57.485 29.630 0.00 0.00 45.32 3.58
4773 10363 9.515020 TTGAAAACTTCTATCAATGTTTGTCAC 57.485 29.630 0.00 0.00 33.61 3.67
4774 10364 8.902806 TGAAAACTTCTATCAATGTTTGTCACT 58.097 29.630 0.00 0.00 33.61 3.41
4854 10475 7.826252 ACTTCATGTCACTAAAGCATTGTCTAT 59.174 33.333 0.00 0.00 0.00 1.98
4855 10476 7.776933 TCATGTCACTAAAGCATTGTCTATC 57.223 36.000 0.00 0.00 0.00 2.08
4856 10477 7.330262 TCATGTCACTAAAGCATTGTCTATCA 58.670 34.615 0.00 0.00 0.00 2.15
4857 10478 7.823799 TCATGTCACTAAAGCATTGTCTATCAA 59.176 33.333 0.00 0.00 40.53 2.57
4858 10479 8.618677 CATGTCACTAAAGCATTGTCTATCAAT 58.381 33.333 0.00 0.00 46.32 2.57
4859 10480 8.201554 TGTCACTAAAGCATTGTCTATCAATC 57.798 34.615 0.00 0.00 43.93 2.67
4860 10481 8.043113 TGTCACTAAAGCATTGTCTATCAATCT 58.957 33.333 0.00 0.00 43.93 2.40
4861 10482 8.887717 GTCACTAAAGCATTGTCTATCAATCTT 58.112 33.333 0.00 0.00 43.93 2.40
4902 10523 2.987413 TTGCGTTGCAAGTCATTAGG 57.013 45.000 0.00 0.00 43.99 2.69
4903 10524 1.164411 TGCGTTGCAAGTCATTAGGG 58.836 50.000 0.00 0.00 34.76 3.53
4904 10525 0.179163 GCGTTGCAAGTCATTAGGGC 60.179 55.000 0.00 0.00 0.00 5.19
4905 10526 1.164411 CGTTGCAAGTCATTAGGGCA 58.836 50.000 0.00 0.00 0.00 5.36
4906 10527 1.745087 CGTTGCAAGTCATTAGGGCAT 59.255 47.619 0.00 0.00 34.03 4.40
4907 10528 2.478370 CGTTGCAAGTCATTAGGGCATG 60.478 50.000 0.00 0.00 34.03 4.06
4908 10529 1.766494 TGCAAGTCATTAGGGCATGG 58.234 50.000 0.00 0.00 0.00 3.66
4909 10530 0.386838 GCAAGTCATTAGGGCATGGC 59.613 55.000 11.56 11.56 0.00 4.40
4927 10548 1.547372 GGCCAATGCATAGCCTTATGG 59.453 52.381 26.05 17.39 43.62 2.74
4928 10549 2.242043 GCCAATGCATAGCCTTATGGT 58.758 47.619 11.86 0.00 37.68 3.55
4929 10550 2.029649 GCCAATGCATAGCCTTATGGTG 60.030 50.000 11.86 0.00 37.68 4.17
4930 10551 3.489355 CCAATGCATAGCCTTATGGTGA 58.511 45.455 0.00 0.00 37.68 4.02
4931 10552 4.084287 CCAATGCATAGCCTTATGGTGAT 58.916 43.478 0.00 0.00 37.68 3.06
4932 10553 4.082408 CCAATGCATAGCCTTATGGTGATG 60.082 45.833 0.00 2.30 37.68 3.07
4933 10554 2.507484 TGCATAGCCTTATGGTGATGC 58.493 47.619 20.06 20.06 45.50 3.91
4934 10555 2.107031 TGCATAGCCTTATGGTGATGCT 59.893 45.455 23.85 8.61 45.50 3.79
4935 10556 2.486982 GCATAGCCTTATGGTGATGCTG 59.513 50.000 19.79 4.24 43.73 4.41
4936 10557 3.748083 CATAGCCTTATGGTGATGCTGT 58.252 45.455 0.00 0.00 34.30 4.40
4937 10558 2.338577 AGCCTTATGGTGATGCTGTC 57.661 50.000 0.00 0.00 35.27 3.51
4938 10559 1.561076 AGCCTTATGGTGATGCTGTCA 59.439 47.619 0.00 0.00 35.27 3.58
4939 10560 2.174210 AGCCTTATGGTGATGCTGTCAT 59.826 45.455 0.00 0.00 39.48 3.06
4940 10561 2.292569 GCCTTATGGTGATGCTGTCATG 59.707 50.000 0.00 0.00 39.48 3.07
4941 10562 3.548770 CCTTATGGTGATGCTGTCATGT 58.451 45.455 0.00 0.00 39.48 3.21
4942 10563 4.707105 CCTTATGGTGATGCTGTCATGTA 58.293 43.478 0.00 0.00 39.48 2.29
4943 10564 4.753610 CCTTATGGTGATGCTGTCATGTAG 59.246 45.833 0.00 0.00 39.48 2.74
4944 10565 2.696989 TGGTGATGCTGTCATGTAGG 57.303 50.000 0.00 0.00 39.48 3.18
4945 10566 2.187100 TGGTGATGCTGTCATGTAGGA 58.813 47.619 0.00 0.00 39.48 2.94
4946 10567 2.773661 TGGTGATGCTGTCATGTAGGAT 59.226 45.455 6.48 6.48 39.48 3.24
4947 10568 3.181462 TGGTGATGCTGTCATGTAGGATC 60.181 47.826 19.40 19.40 41.63 3.36
4948 10569 3.055591 GTGATGCTGTCATGTAGGATCG 58.944 50.000 20.19 0.00 43.43 3.69
4949 10570 2.036346 TGATGCTGTCATGTAGGATCGG 59.964 50.000 20.19 3.85 43.43 4.18
4950 10571 1.775385 TGCTGTCATGTAGGATCGGA 58.225 50.000 0.00 0.00 0.00 4.55
4951 10572 2.319844 TGCTGTCATGTAGGATCGGAT 58.680 47.619 0.00 0.00 0.00 4.18
4952 10573 2.036346 TGCTGTCATGTAGGATCGGATG 59.964 50.000 0.00 0.00 0.00 3.51
4953 10574 2.036475 GCTGTCATGTAGGATCGGATGT 59.964 50.000 0.00 0.00 0.00 3.06
4954 10575 3.858877 GCTGTCATGTAGGATCGGATGTC 60.859 52.174 0.00 0.00 0.00 3.06
4955 10576 3.295973 TGTCATGTAGGATCGGATGTCA 58.704 45.455 0.00 0.00 0.00 3.58
4956 10577 3.319122 TGTCATGTAGGATCGGATGTCAG 59.681 47.826 0.00 0.00 0.00 3.51
4957 10578 2.893489 TCATGTAGGATCGGATGTCAGG 59.107 50.000 0.00 0.00 0.00 3.86
4958 10579 2.748209 TGTAGGATCGGATGTCAGGA 57.252 50.000 0.00 0.00 0.00 3.86
4959 10580 3.026707 TGTAGGATCGGATGTCAGGAA 57.973 47.619 0.00 0.00 0.00 3.36
4960 10581 3.371034 TGTAGGATCGGATGTCAGGAAA 58.629 45.455 0.00 0.00 0.00 3.13
4961 10582 3.772572 TGTAGGATCGGATGTCAGGAAAA 59.227 43.478 0.00 0.00 0.00 2.29
4962 10583 4.408921 TGTAGGATCGGATGTCAGGAAAAT 59.591 41.667 0.00 0.00 0.00 1.82
4963 10584 5.600898 TGTAGGATCGGATGTCAGGAAAATA 59.399 40.000 0.00 0.00 0.00 1.40
4964 10585 5.220710 AGGATCGGATGTCAGGAAAATAG 57.779 43.478 0.00 0.00 0.00 1.73
4965 10586 4.901849 AGGATCGGATGTCAGGAAAATAGA 59.098 41.667 0.00 0.00 0.00 1.98
4966 10587 5.545723 AGGATCGGATGTCAGGAAAATAGAT 59.454 40.000 0.00 0.00 0.00 1.98
4967 10588 6.043706 AGGATCGGATGTCAGGAAAATAGATT 59.956 38.462 0.00 0.00 0.00 2.40
4968 10589 6.370166 GGATCGGATGTCAGGAAAATAGATTC 59.630 42.308 0.00 0.00 0.00 2.52
4969 10590 5.289595 TCGGATGTCAGGAAAATAGATTCG 58.710 41.667 0.00 0.00 0.00 3.34
4970 10591 4.449068 CGGATGTCAGGAAAATAGATTCGG 59.551 45.833 0.00 0.00 0.00 4.30
4971 10592 5.611374 GGATGTCAGGAAAATAGATTCGGA 58.389 41.667 0.00 0.00 0.00 4.55
4972 10593 6.234177 GGATGTCAGGAAAATAGATTCGGAT 58.766 40.000 0.00 0.00 0.00 4.18
4973 10594 7.386851 GGATGTCAGGAAAATAGATTCGGATA 58.613 38.462 0.00 0.00 0.00 2.59
4974 10595 7.547370 GGATGTCAGGAAAATAGATTCGGATAG 59.453 40.741 0.00 0.00 0.00 2.08
4975 10596 7.597288 TGTCAGGAAAATAGATTCGGATAGA 57.403 36.000 0.00 0.00 0.00 1.98
4976 10597 7.661968 TGTCAGGAAAATAGATTCGGATAGAG 58.338 38.462 0.00 0.00 0.00 2.43
4977 10598 7.505923 TGTCAGGAAAATAGATTCGGATAGAGA 59.494 37.037 0.00 0.00 0.00 3.10
4978 10599 8.361139 GTCAGGAAAATAGATTCGGATAGAGAA 58.639 37.037 0.00 0.00 0.00 2.87
4979 10600 8.580720 TCAGGAAAATAGATTCGGATAGAGAAG 58.419 37.037 0.00 0.00 0.00 2.85
4980 10601 7.330700 CAGGAAAATAGATTCGGATAGAGAAGC 59.669 40.741 0.00 0.00 34.56 3.86
4981 10602 6.309251 GGAAAATAGATTCGGATAGAGAAGCG 59.691 42.308 0.00 0.00 38.83 4.68
4982 10603 4.974368 ATAGATTCGGATAGAGAAGCGG 57.026 45.455 0.00 0.00 38.83 5.52
4983 10604 1.889829 AGATTCGGATAGAGAAGCGGG 59.110 52.381 0.00 0.00 38.83 6.13
4984 10605 1.887198 GATTCGGATAGAGAAGCGGGA 59.113 52.381 0.00 0.00 0.00 5.14
4985 10606 1.996798 TTCGGATAGAGAAGCGGGAT 58.003 50.000 0.00 0.00 0.00 3.85
4986 10607 1.535833 TCGGATAGAGAAGCGGGATC 58.464 55.000 0.00 0.00 0.00 3.36
4987 10608 0.528470 CGGATAGAGAAGCGGGATCC 59.472 60.000 1.92 1.92 33.99 3.36
4988 10609 1.888826 CGGATAGAGAAGCGGGATCCT 60.889 57.143 12.58 0.00 34.99 3.24
4989 10610 1.822371 GGATAGAGAAGCGGGATCCTC 59.178 57.143 12.58 0.56 34.43 3.71
4990 10611 2.520069 GATAGAGAAGCGGGATCCTCA 58.480 52.381 12.58 0.00 0.00 3.86
4991 10612 2.454336 TAGAGAAGCGGGATCCTCAA 57.546 50.000 12.58 0.00 0.00 3.02
4992 10613 1.118838 AGAGAAGCGGGATCCTCAAG 58.881 55.000 12.58 2.28 0.00 3.02
4993 10614 0.105778 GAGAAGCGGGATCCTCAAGG 59.894 60.000 12.58 0.00 0.00 3.61
4994 10615 1.524849 GAAGCGGGATCCTCAAGGC 60.525 63.158 12.58 7.83 34.44 4.35
4995 10616 2.257409 GAAGCGGGATCCTCAAGGCA 62.257 60.000 12.58 0.00 34.44 4.75
4996 10617 2.203126 GCGGGATCCTCAAGGCAG 60.203 66.667 12.58 0.00 34.44 4.85
4997 10618 2.507944 CGGGATCCTCAAGGCAGG 59.492 66.667 12.58 0.00 34.44 4.85
4998 10619 2.370445 CGGGATCCTCAAGGCAGGT 61.370 63.158 12.58 0.00 34.76 4.00
4999 10620 1.225704 GGGATCCTCAAGGCAGGTG 59.774 63.158 12.58 0.00 34.76 4.00
5000 10621 1.452833 GGATCCTCAAGGCAGGTGC 60.453 63.158 3.84 0.00 41.14 5.01
5001 10622 1.606531 GATCCTCAAGGCAGGTGCT 59.393 57.895 1.26 0.00 41.70 4.40
5002 10623 0.034670 GATCCTCAAGGCAGGTGCTT 60.035 55.000 1.26 0.00 41.70 3.91
5003 10624 0.323178 ATCCTCAAGGCAGGTGCTTG 60.323 55.000 1.26 5.10 41.70 4.01
5004 10625 1.975407 CCTCAAGGCAGGTGCTTGG 60.975 63.158 1.26 0.00 41.70 3.61
5005 10626 1.073722 CTCAAGGCAGGTGCTTGGA 59.926 57.895 1.26 0.00 41.70 3.53
5006 10627 0.538057 CTCAAGGCAGGTGCTTGGAA 60.538 55.000 1.26 0.00 41.70 3.53
5007 10628 0.106268 TCAAGGCAGGTGCTTGGAAA 60.106 50.000 1.26 0.00 41.70 3.13
5027 10648 8.463930 TGGAAAGAAAAAGTGTAATCTGATGT 57.536 30.769 0.00 0.00 0.00 3.06
5028 10649 9.567776 TGGAAAGAAAAAGTGTAATCTGATGTA 57.432 29.630 0.00 0.00 0.00 2.29
5059 10680 9.886132 ACTGAAAAAGTTGAAGTAAAGAGTAGA 57.114 29.630 0.00 0.00 34.57 2.59
5064 10685 8.541133 AAAGTTGAAGTAAAGAGTAGAGATGC 57.459 34.615 0.00 0.00 0.00 3.91
5065 10686 7.233389 AGTTGAAGTAAAGAGTAGAGATGCA 57.767 36.000 0.00 0.00 0.00 3.96
5066 10687 7.846066 AGTTGAAGTAAAGAGTAGAGATGCAT 58.154 34.615 0.00 0.00 0.00 3.96
5067 10688 8.972127 AGTTGAAGTAAAGAGTAGAGATGCATA 58.028 33.333 0.00 0.00 0.00 3.14
5068 10689 9.757227 GTTGAAGTAAAGAGTAGAGATGCATAT 57.243 33.333 0.00 0.00 0.00 1.78
5069 10690 9.755804 TTGAAGTAAAGAGTAGAGATGCATATG 57.244 33.333 0.00 0.00 0.00 1.78
5070 10691 8.918116 TGAAGTAAAGAGTAGAGATGCATATGT 58.082 33.333 0.00 0.00 0.00 2.29
5078 10699 9.973661 AGAGTAGAGATGCATATGTATTAGAGT 57.026 33.333 7.78 0.00 0.00 3.24
5105 10726 9.877178 TTCTACTTTCTATTTCTTGATGAGACC 57.123 33.333 0.00 0.00 33.02 3.85
5106 10727 8.478877 TCTACTTTCTATTTCTTGATGAGACCC 58.521 37.037 0.00 0.00 33.02 4.46
5107 10728 7.020827 ACTTTCTATTTCTTGATGAGACCCA 57.979 36.000 0.00 0.00 33.02 4.51
5108 10729 7.637511 ACTTTCTATTTCTTGATGAGACCCAT 58.362 34.615 0.00 0.00 38.43 4.00
5109 10730 8.112183 ACTTTCTATTTCTTGATGAGACCCATT 58.888 33.333 0.00 0.00 35.17 3.16
5110 10731 9.618890 CTTTCTATTTCTTGATGAGACCCATTA 57.381 33.333 0.00 0.00 35.17 1.90
5111 10732 9.618890 TTTCTATTTCTTGATGAGACCCATTAG 57.381 33.333 0.00 0.00 35.17 1.73
5112 10733 8.324191 TCTATTTCTTGATGAGACCCATTAGT 57.676 34.615 0.00 0.00 35.17 2.24
5113 10734 9.434275 TCTATTTCTTGATGAGACCCATTAGTA 57.566 33.333 0.00 0.00 35.17 1.82
5114 10735 9.703892 CTATTTCTTGATGAGACCCATTAGTAG 57.296 37.037 0.00 0.00 35.17 2.57
5115 10736 7.496346 TTTCTTGATGAGACCCATTAGTAGT 57.504 36.000 0.00 0.00 35.17 2.73
5116 10737 8.603898 TTTCTTGATGAGACCCATTAGTAGTA 57.396 34.615 0.00 0.00 35.17 1.82
5117 10738 7.825331 TCTTGATGAGACCCATTAGTAGTAG 57.175 40.000 0.00 0.00 35.17 2.57
5118 10739 7.355101 TCTTGATGAGACCCATTAGTAGTAGT 58.645 38.462 0.00 0.00 35.17 2.73
5119 10740 7.839705 TCTTGATGAGACCCATTAGTAGTAGTT 59.160 37.037 0.00 0.00 35.17 2.24
5120 10741 7.973048 TGATGAGACCCATTAGTAGTAGTTT 57.027 36.000 0.00 0.00 35.17 2.66
5121 10742 7.782049 TGATGAGACCCATTAGTAGTAGTTTG 58.218 38.462 0.00 0.00 35.17 2.93
5122 10743 7.399191 TGATGAGACCCATTAGTAGTAGTTTGT 59.601 37.037 0.00 0.00 35.17 2.83
5123 10744 8.834004 ATGAGACCCATTAGTAGTAGTTTGTA 57.166 34.615 0.00 0.00 29.34 2.41
5124 10745 8.834004 TGAGACCCATTAGTAGTAGTTTGTAT 57.166 34.615 0.00 0.00 0.00 2.29
5125 10746 9.263446 TGAGACCCATTAGTAGTAGTTTGTATT 57.737 33.333 0.00 0.00 0.00 1.89
5126 10747 9.530633 GAGACCCATTAGTAGTAGTTTGTATTG 57.469 37.037 0.00 0.00 0.00 1.90
5127 10748 8.483758 AGACCCATTAGTAGTAGTTTGTATTGG 58.516 37.037 0.00 0.00 0.00 3.16
5128 10749 7.571025 ACCCATTAGTAGTAGTTTGTATTGGG 58.429 38.462 0.00 0.00 39.02 4.12
5129 10750 6.996282 CCCATTAGTAGTAGTTTGTATTGGGG 59.004 42.308 0.00 0.00 33.44 4.96
5130 10751 7.147444 CCCATTAGTAGTAGTTTGTATTGGGGA 60.147 40.741 0.00 0.00 33.44 4.81
5131 10752 7.931948 CCATTAGTAGTAGTTTGTATTGGGGAG 59.068 40.741 0.00 0.00 0.00 4.30
5132 10753 8.701895 CATTAGTAGTAGTTTGTATTGGGGAGA 58.298 37.037 0.00 0.00 0.00 3.71
5133 10754 6.793505 AGTAGTAGTTTGTATTGGGGAGAG 57.206 41.667 0.00 0.00 0.00 3.20
5134 10755 6.500336 AGTAGTAGTTTGTATTGGGGAGAGA 58.500 40.000 0.00 0.00 0.00 3.10
5135 10756 6.958192 AGTAGTAGTTTGTATTGGGGAGAGAA 59.042 38.462 0.00 0.00 0.00 2.87
5136 10757 6.697641 AGTAGTTTGTATTGGGGAGAGAAA 57.302 37.500 0.00 0.00 0.00 2.52
5137 10758 7.086685 AGTAGTTTGTATTGGGGAGAGAAAA 57.913 36.000 0.00 0.00 0.00 2.29
5138 10759 7.699878 AGTAGTTTGTATTGGGGAGAGAAAAT 58.300 34.615 0.00 0.00 0.00 1.82
5139 10760 7.829706 AGTAGTTTGTATTGGGGAGAGAAAATC 59.170 37.037 0.00 0.00 0.00 2.17
5140 10761 6.552008 AGTTTGTATTGGGGAGAGAAAATCA 58.448 36.000 0.00 0.00 0.00 2.57
5141 10762 6.660949 AGTTTGTATTGGGGAGAGAAAATCAG 59.339 38.462 0.00 0.00 0.00 2.90
5142 10763 5.779241 TGTATTGGGGAGAGAAAATCAGT 57.221 39.130 0.00 0.00 0.00 3.41
5143 10764 6.884472 TGTATTGGGGAGAGAAAATCAGTA 57.116 37.500 0.00 0.00 0.00 2.74
5144 10765 7.451731 TGTATTGGGGAGAGAAAATCAGTAT 57.548 36.000 0.00 0.00 0.00 2.12
5145 10766 8.561536 TGTATTGGGGAGAGAAAATCAGTATA 57.438 34.615 0.00 0.00 0.00 1.47
5146 10767 8.998814 TGTATTGGGGAGAGAAAATCAGTATAA 58.001 33.333 0.00 0.00 0.00 0.98
5149 10770 8.752005 TTGGGGAGAGAAAATCAGTATAATTG 57.248 34.615 0.00 0.00 0.00 2.32
5150 10771 6.772716 TGGGGAGAGAAAATCAGTATAATTGC 59.227 38.462 0.00 0.00 0.00 3.56
5151 10772 6.207614 GGGGAGAGAAAATCAGTATAATTGCC 59.792 42.308 0.00 0.00 0.00 4.52
5152 10773 7.001073 GGGAGAGAAAATCAGTATAATTGCCT 58.999 38.462 0.00 0.00 0.00 4.75
5153 10774 7.174080 GGGAGAGAAAATCAGTATAATTGCCTC 59.826 40.741 0.00 0.00 0.00 4.70
5154 10775 7.716998 GGAGAGAAAATCAGTATAATTGCCTCA 59.283 37.037 0.00 0.00 0.00 3.86
5155 10776 9.113838 GAGAGAAAATCAGTATAATTGCCTCAA 57.886 33.333 0.00 0.00 0.00 3.02
5156 10777 9.118300 AGAGAAAATCAGTATAATTGCCTCAAG 57.882 33.333 0.00 0.00 0.00 3.02
5157 10778 7.710896 AGAAAATCAGTATAATTGCCTCAAGC 58.289 34.615 0.00 0.00 44.14 4.01
5158 10779 7.559170 AGAAAATCAGTATAATTGCCTCAAGCT 59.441 33.333 0.00 0.00 44.23 3.74
5159 10780 8.752005 AAAATCAGTATAATTGCCTCAAGCTA 57.248 30.769 0.00 0.00 44.23 3.32
5160 10781 7.736447 AATCAGTATAATTGCCTCAAGCTAC 57.264 36.000 0.00 0.00 44.23 3.58
5161 10782 6.485830 TCAGTATAATTGCCTCAAGCTACT 57.514 37.500 0.00 0.00 44.23 2.57
5162 10783 6.889198 TCAGTATAATTGCCTCAAGCTACTT 58.111 36.000 0.00 0.00 44.23 2.24
5163 10784 7.338710 TCAGTATAATTGCCTCAAGCTACTTT 58.661 34.615 0.00 0.00 44.23 2.66
5164 10785 7.829211 TCAGTATAATTGCCTCAAGCTACTTTT 59.171 33.333 0.00 0.00 44.23 2.27
5165 10786 8.462016 CAGTATAATTGCCTCAAGCTACTTTTT 58.538 33.333 0.00 0.00 44.23 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.030805 GTCTATTTTGCATCGGATGGCC 60.031 50.000 18.96 0.00 0.00 5.36
61 62 3.131396 GACCGTCTATTTTGCATCGGAT 58.869 45.455 8.35 0.00 40.90 4.18
64 65 5.389830 CCATATGACCGTCTATTTTGCATCG 60.390 44.000 3.65 0.00 0.00 3.84
74 75 4.404394 TGAAGAAAGCCATATGACCGTCTA 59.596 41.667 3.65 0.00 0.00 2.59
102 103 3.388350 GGTCGGGGAAGAAGATGAATACT 59.612 47.826 0.00 0.00 0.00 2.12
121 122 1.674322 CGGTGGTTCATGGGTGGTC 60.674 63.158 0.00 0.00 0.00 4.02
132 134 0.684805 TGACTTTTTGGCCGGTGGTT 60.685 50.000 1.90 0.00 0.00 3.67
146 148 0.106149 GTGGACGAGGTGGTTGACTT 59.894 55.000 0.00 0.00 0.00 3.01
205 209 1.837090 GATGGATGGCGGTAAGGGT 59.163 57.895 0.00 0.00 0.00 4.34
244 249 2.474816 GCTAGTTTAGAGGCATGGTCG 58.525 52.381 0.00 0.00 0.00 4.79
326 340 3.423154 GGCCAAGAACGAGCCACG 61.423 66.667 0.00 0.00 46.34 4.94
367 381 0.179169 GGAGAAGTAGGTGACGACGC 60.179 60.000 0.00 0.00 41.32 5.19
375 389 4.079958 AGTTGTTTTGGTGGAGAAGTAGGT 60.080 41.667 0.00 0.00 0.00 3.08
402 420 5.691754 GTCACTCGCCTGAATTTTCAATTTT 59.308 36.000 0.00 0.00 36.64 1.82
455 473 1.202973 CGAGAGCACATACTTCGCGG 61.203 60.000 6.13 0.00 0.00 6.46
477 495 1.611491 GTTCACCGGGAAGCATTTGAA 59.389 47.619 6.32 0.33 35.82 2.69
513 531 9.778741 TGTCAAGTTTGATACTAAAGAACAGAT 57.221 29.630 0.00 0.00 39.73 2.90
514 532 9.607988 TTGTCAAGTTTGATACTAAAGAACAGA 57.392 29.630 0.00 0.00 39.73 3.41
605 624 7.498570 TGCTTTCAAAAATAGCATTTTTGGAGT 59.501 29.630 27.67 7.76 44.86 3.85
692 711 5.741011 AGCTCGGGATGAACAGTAAAATTA 58.259 37.500 0.00 0.00 0.00 1.40
720 821 2.290122 ATCTTCTGCTCCTCCGCACG 62.290 60.000 0.00 0.00 35.74 5.34
725 826 4.116238 CGAAAGTTATCTTCTGCTCCTCC 58.884 47.826 0.00 0.00 32.90 4.30
740 841 4.287766 AGGAGAGTATTTGGCGAAAGTT 57.712 40.909 0.00 0.00 0.00 2.66
797 1442 2.490903 CCAAATGGCAGTCAAGAGAAGG 59.509 50.000 0.00 0.00 0.00 3.46
932 1578 1.738099 CGGAGTGGTTCGAAGCAGG 60.738 63.158 28.94 15.08 37.04 4.85
1386 2042 3.170810 GAGGACGCCGTAGAGCTCG 62.171 68.421 8.37 0.00 0.00 5.03
1428 2084 2.410469 CCGTAGAACCCGCGGTAG 59.590 66.667 26.12 12.62 40.53 3.18
1650 2546 0.855349 CATTCTGTACATCGCCTCGC 59.145 55.000 0.00 0.00 0.00 5.03
1656 2552 2.857748 TGCTTACGCATTCTGTACATCG 59.142 45.455 0.00 0.00 42.25 3.84
1681 2577 2.305009 CCAAGCTGATCCCAATCTTCC 58.695 52.381 0.00 0.00 32.75 3.46
1682 2578 1.680207 GCCAAGCTGATCCCAATCTTC 59.320 52.381 0.00 0.00 32.75 2.87
1777 3954 4.093408 CCCTAACACGAACAATCATGAGTG 59.907 45.833 20.95 20.95 36.67 3.51
1811 3988 1.531840 CTCCGTCGGATGGGGATCT 60.532 63.158 15.81 0.00 0.00 2.75
1819 3996 3.766051 ACTAAAGGTTTACTCCGTCGGAT 59.234 43.478 15.81 7.87 0.00 4.18
1820 3997 3.057315 CACTAAAGGTTTACTCCGTCGGA 60.057 47.826 14.54 14.54 0.00 4.55
1821 3998 3.248266 CACTAAAGGTTTACTCCGTCGG 58.752 50.000 4.39 4.39 0.00 4.79
1822 3999 3.057315 TCCACTAAAGGTTTACTCCGTCG 60.057 47.826 0.00 0.00 0.00 5.12
1823 4000 4.021632 ACTCCACTAAAGGTTTACTCCGTC 60.022 45.833 0.00 0.00 0.00 4.79
1864 4056 6.726490 TTACTCAGTTATACACAGGGGATC 57.274 41.667 0.00 0.00 0.00 3.36
1865 4057 6.672657 AGTTTACTCAGTTATACACAGGGGAT 59.327 38.462 0.00 0.00 0.00 3.85
1869 4061 9.871238 ATGTAAGTTTACTCAGTTATACACAGG 57.129 33.333 3.91 0.00 34.77 4.00
1874 4066 9.983804 GCCAAATGTAAGTTTACTCAGTTATAC 57.016 33.333 3.91 0.00 34.77 1.47
1881 4073 7.880713 TGTATGAGCCAAATGTAAGTTTACTCA 59.119 33.333 3.91 0.00 37.61 3.41
1930 4122 2.282180 GGCGTGGTCACCATGGTT 60.282 61.111 16.84 0.00 40.61 3.67
1947 4139 2.749044 AGCAGTCCAGCATTGCCG 60.749 61.111 4.70 0.00 38.58 5.69
1953 4145 2.952293 GCTCTCCAGCAGTCCAGCA 61.952 63.158 0.00 0.00 46.06 4.41
1954 4146 2.125188 GCTCTCCAGCAGTCCAGC 60.125 66.667 0.00 0.00 46.06 4.85
1997 4189 0.108472 CTCGATCAGTGCAGGCAGAA 60.108 55.000 0.00 0.00 0.00 3.02
2003 4195 1.565305 GTAAGCCTCGATCAGTGCAG 58.435 55.000 0.00 0.00 0.00 4.41
2077 4269 2.871099 CTTCTGCTGCTGCTGCTG 59.129 61.111 27.67 26.32 40.48 4.41
2085 4300 4.755614 GCTGCGTGCTTCTGCTGC 62.756 66.667 0.00 0.00 46.19 5.25
2098 4313 4.228567 GCTACTCCTCCCCGCTGC 62.229 72.222 0.00 0.00 0.00 5.25
2104 4319 0.033011 TCCTGTCAGCTACTCCTCCC 60.033 60.000 0.00 0.00 0.00 4.30
2116 4331 1.005748 CGTGCTTCTGCTCCTGTCA 60.006 57.895 0.00 0.00 40.48 3.58
2118 4333 2.358003 GCGTGCTTCTGCTCCTGT 60.358 61.111 0.00 0.00 40.48 4.00
2122 4337 2.675056 CCACTGCGTGCTTCTGCTC 61.675 63.158 3.56 0.00 40.48 4.26
2133 4348 2.435586 CTGCTTCTCCCCACTGCG 60.436 66.667 0.00 0.00 0.00 5.18
2138 4353 3.251509 TGCTGCTGCTTCTCCCCA 61.252 61.111 17.00 0.00 40.48 4.96
2145 4360 2.984155 CTGTGCCTGCTGCTGCTT 60.984 61.111 17.00 0.00 42.00 3.91
2168 4383 2.268280 CTGCTACTGCTGCTGGCT 59.732 61.111 11.29 0.00 42.39 4.75
2180 4395 4.393155 CCCCGCTGTGTGCTGCTA 62.393 66.667 0.00 0.00 40.11 3.49
2289 4591 3.591254 AAGCTCCCTTGTCGACGGC 62.591 63.158 11.62 8.01 0.00 5.68
2344 4646 5.336372 CGGGCAAGGATAAATTTTCTTCACA 60.336 40.000 0.00 0.00 0.00 3.58
2365 4667 0.757188 ATACTCTGTCTGGAGGCGGG 60.757 60.000 0.00 0.00 37.63 6.13
2368 4670 5.046950 CCCTAAATATACTCTGTCTGGAGGC 60.047 48.000 0.00 0.00 37.63 4.70
2378 4680 8.478877 CGCCTATTCAATCCCTAAATATACTCT 58.521 37.037 0.00 0.00 0.00 3.24
2393 4695 1.071471 CCTCCGGCGCCTATTCAAT 59.929 57.895 26.68 0.00 0.00 2.57
2397 4699 0.182775 AAAATCCTCCGGCGCCTATT 59.817 50.000 26.68 12.80 0.00 1.73
2504 4807 1.674962 GTCGTCGCTAGGTGGTCTATT 59.325 52.381 0.00 0.00 0.00 1.73
2505 4808 1.134159 AGTCGTCGCTAGGTGGTCTAT 60.134 52.381 0.00 0.00 0.00 1.98
2571 4875 3.838271 GTCCGGCTCCGATCAGCA 61.838 66.667 10.28 0.00 41.65 4.41
2572 4876 2.852495 TTTGTCCGGCTCCGATCAGC 62.852 60.000 10.28 0.00 42.83 4.26
2575 4879 1.814169 GGTTTGTCCGGCTCCGATC 60.814 63.158 10.28 3.11 42.83 3.69
2708 5018 1.785430 GTCTTCGTTCGTCTGTGTTCC 59.215 52.381 0.00 0.00 0.00 3.62
2788 5099 1.071814 GGGCGTGTGGAGGTTTGTA 59.928 57.895 0.00 0.00 0.00 2.41
3087 5406 3.138468 CCCCTAAACCAAATAGAGGAGGG 59.862 52.174 0.00 0.00 37.49 4.30
3099 5418 1.420430 CTAGCCGATCCCCTAAACCA 58.580 55.000 0.00 0.00 0.00 3.67
3105 5424 2.844839 GCACCTAGCCGATCCCCT 60.845 66.667 0.00 0.00 37.23 4.79
3144 5469 6.875972 ATCCAGCTATAAGGGACGATAAAT 57.124 37.500 0.00 0.00 32.60 1.40
3145 5470 6.380274 CCTATCCAGCTATAAGGGACGATAAA 59.620 42.308 0.00 0.00 32.60 1.40
3148 5473 4.282496 CCTATCCAGCTATAAGGGACGAT 58.718 47.826 0.00 0.00 32.60 3.73
3151 5476 3.108376 CCCCTATCCAGCTATAAGGGAC 58.892 54.545 19.33 0.00 35.75 4.46
3153 5478 3.491766 TCCCCTATCCAGCTATAAGGG 57.508 52.381 13.30 13.30 35.23 3.95
3154 5479 3.639094 CGATCCCCTATCCAGCTATAAGG 59.361 52.174 0.00 0.00 0.00 2.69
3163 5488 2.449730 ACTCTAACCGATCCCCTATCCA 59.550 50.000 0.00 0.00 0.00 3.41
3170 5495 0.179054 GGCCAACTCTAACCGATCCC 60.179 60.000 0.00 0.00 0.00 3.85
3328 7067 6.153340 ACCTGTGAAATGTCATAAAAGGGATG 59.847 38.462 10.12 0.00 35.80 3.51
3344 7083 2.746904 CCAATCGCATACACCTGTGAAA 59.253 45.455 3.94 0.00 38.98 2.69
3354 7093 1.302511 ATCCCCGCCAATCGCATAC 60.303 57.895 0.00 0.00 37.30 2.39
3447 7186 1.448497 GTTGTCCACGGTCTTGGGA 59.552 57.895 0.00 0.00 37.24 4.37
3489 7234 3.432046 CCACTGCAGTTTGAAACCCAAAT 60.432 43.478 18.94 0.00 45.48 2.32
3585 7330 2.182842 CGTGCTCCTGCCCATAAGC 61.183 63.158 0.00 0.00 38.71 3.09
3714 7460 5.488341 TGTCCCTTCTTCTTTATCCTTTCG 58.512 41.667 0.00 0.00 0.00 3.46
3768 7519 1.452108 CCGGGGAATCAACTCCTGC 60.452 63.158 0.00 0.00 35.63 4.85
3789 7540 1.268948 TGCTCTCGCTTCTGATCATCG 60.269 52.381 0.00 0.00 36.97 3.84
3795 7546 0.459078 CATCCTGCTCTCGCTTCTGA 59.541 55.000 0.00 0.00 36.97 3.27
4011 7762 0.409484 AGCCAGTAAACCCAGCCATT 59.591 50.000 0.00 0.00 0.00 3.16
4023 7774 1.610554 GGCCAGGTACGAAGCCAGTA 61.611 60.000 12.36 0.00 45.07 2.74
4175 7926 0.888619 GCAGAACTTGGGGCCTTAAC 59.111 55.000 0.84 0.00 0.00 2.01
4264 8015 7.412020 GCCTTATTGAAGAACAGAAACGACTAG 60.412 40.741 0.00 0.00 34.25 2.57
4265 8016 6.367969 GCCTTATTGAAGAACAGAAACGACTA 59.632 38.462 0.00 0.00 34.25 2.59
4269 8020 5.356882 TGCCTTATTGAAGAACAGAAACG 57.643 39.130 0.00 0.00 34.25 3.60
4304 8067 2.286563 TGCAGACATACACACAAACACG 59.713 45.455 0.00 0.00 0.00 4.49
4337 8100 8.713271 CAGGAGAATTCTTACTTACAACAGAAC 58.287 37.037 9.87 0.00 0.00 3.01
4352 8115 9.413734 CCCACTAAAAATATTCAGGAGAATTCT 57.586 33.333 7.95 7.95 41.64 2.40
4400 8163 0.034186 AGATTGCCATTTGCCCTCGA 60.034 50.000 0.00 0.00 40.16 4.04
4415 8178 6.238648 ACAAGATTTGGTCGGAAGTAAGATT 58.761 36.000 0.00 0.00 34.12 2.40
4459 8222 3.981071 AGAAAATCCATGTCCGTCAGA 57.019 42.857 0.00 0.00 0.00 3.27
4586 10171 4.558178 TCATGATGAAATTTTGCAAGCGT 58.442 34.783 0.00 0.00 0.00 5.07
4587 10172 5.518529 TTCATGATGAAATTTTGCAAGCG 57.481 34.783 5.21 0.00 32.71 4.68
4641 10226 5.634439 TGACATTTTTGGAGCATCGATTTTG 59.366 36.000 0.00 0.00 34.37 2.44
4698 10283 2.928801 TTTGTAGAGCTGTGGCAAGA 57.071 45.000 0.00 0.00 41.70 3.02
4699 10284 2.816087 ACATTTGTAGAGCTGTGGCAAG 59.184 45.455 0.00 0.00 41.70 4.01
4702 10287 1.394917 CGACATTTGTAGAGCTGTGGC 59.605 52.381 0.00 0.00 39.06 5.01
4703 10288 2.688507 ACGACATTTGTAGAGCTGTGG 58.311 47.619 0.00 0.00 0.00 4.17
4704 10289 3.665323 GCAACGACATTTGTAGAGCTGTG 60.665 47.826 0.00 0.00 0.00 3.66
4705 10290 2.480419 GCAACGACATTTGTAGAGCTGT 59.520 45.455 0.00 0.00 0.00 4.40
4707 10292 2.766313 TGCAACGACATTTGTAGAGCT 58.234 42.857 0.00 0.00 0.00 4.09
4708 10293 3.125146 TCATGCAACGACATTTGTAGAGC 59.875 43.478 0.00 2.83 0.00 4.09
4709 10294 4.926860 TCATGCAACGACATTTGTAGAG 57.073 40.909 0.00 0.00 0.00 2.43
4725 10315 3.123959 ACGCTTGCAAAATTTCATCATGC 59.876 39.130 0.00 5.09 37.52 4.06
4797 10399 9.561270 GAAAGTACTCTTGGCTCATTTAAAATC 57.439 33.333 0.00 0.00 33.79 2.17
4799 10401 7.581476 CGAAAGTACTCTTGGCTCATTTAAAA 58.419 34.615 0.00 0.00 33.79 1.52
4801 10403 5.121768 GCGAAAGTACTCTTGGCTCATTTAA 59.878 40.000 13.48 0.00 33.81 1.52
4803 10405 3.437049 GCGAAAGTACTCTTGGCTCATTT 59.563 43.478 13.48 0.00 33.81 2.32
4807 10409 1.996191 CAGCGAAAGTACTCTTGGCTC 59.004 52.381 17.69 1.66 40.09 4.70
4808 10410 1.618837 TCAGCGAAAGTACTCTTGGCT 59.381 47.619 15.97 15.97 41.58 4.75
4809 10411 1.727335 GTCAGCGAAAGTACTCTTGGC 59.273 52.381 13.12 13.12 35.53 4.52
4810 10412 3.305398 AGTCAGCGAAAGTACTCTTGG 57.695 47.619 0.00 0.00 33.79 3.61
4811 10413 4.299155 TGAAGTCAGCGAAAGTACTCTTG 58.701 43.478 0.00 0.00 33.79 3.02
4861 10482 8.443160 CGCAAAGTGTCTTTCTATCAAAGATTA 58.557 33.333 0.34 0.00 38.39 1.75
4862 10483 7.041098 ACGCAAAGTGTCTTTCTATCAAAGATT 60.041 33.333 0.34 0.00 38.39 2.40
4863 10484 6.428159 ACGCAAAGTGTCTTTCTATCAAAGAT 59.572 34.615 0.34 0.00 38.39 2.40
4874 10495 2.645730 TTGCAACGCAAAGTGTCTTT 57.354 40.000 0.00 0.00 45.96 2.52
4907 10528 1.547372 CCATAAGGCTATGCATTGGCC 59.453 52.381 26.45 26.29 45.57 5.36
4908 10529 2.029649 CACCATAAGGCTATGCATTGGC 60.030 50.000 23.68 23.68 39.06 4.52
4909 10530 3.489355 TCACCATAAGGCTATGCATTGG 58.511 45.455 3.54 7.19 39.06 3.16
4910 10531 5.055642 CATCACCATAAGGCTATGCATTG 57.944 43.478 3.54 3.55 39.06 2.82
4915 10536 3.748083 ACAGCATCACCATAAGGCTATG 58.252 45.455 0.00 0.00 39.06 2.23
4916 10537 3.392285 TGACAGCATCACCATAAGGCTAT 59.608 43.478 0.00 0.00 39.06 2.97
4917 10538 2.771372 TGACAGCATCACCATAAGGCTA 59.229 45.455 0.00 0.00 39.06 3.93
4918 10539 1.561076 TGACAGCATCACCATAAGGCT 59.439 47.619 0.00 0.00 39.06 4.58
4919 10540 2.042686 TGACAGCATCACCATAAGGC 57.957 50.000 0.00 0.00 39.06 4.35
4920 10541 3.548770 ACATGACAGCATCACCATAAGG 58.451 45.455 0.00 0.00 41.24 2.69
4921 10542 4.753610 CCTACATGACAGCATCACCATAAG 59.246 45.833 0.00 0.00 41.24 1.73
4922 10543 4.408596 TCCTACATGACAGCATCACCATAA 59.591 41.667 0.00 0.00 41.24 1.90
4923 10544 3.966665 TCCTACATGACAGCATCACCATA 59.033 43.478 0.00 0.00 41.24 2.74
4924 10545 2.773661 TCCTACATGACAGCATCACCAT 59.226 45.455 0.00 0.00 41.24 3.55
4925 10546 2.187100 TCCTACATGACAGCATCACCA 58.813 47.619 0.00 0.00 41.24 4.17
4926 10547 2.988010 TCCTACATGACAGCATCACC 57.012 50.000 0.00 0.00 41.24 4.02
4927 10548 3.055591 CGATCCTACATGACAGCATCAC 58.944 50.000 0.00 0.00 41.24 3.06
4928 10549 2.036346 CCGATCCTACATGACAGCATCA 59.964 50.000 0.00 0.00 43.13 3.07
4929 10550 2.297315 TCCGATCCTACATGACAGCATC 59.703 50.000 0.00 0.00 30.68 3.91
4930 10551 2.319844 TCCGATCCTACATGACAGCAT 58.680 47.619 0.00 0.00 34.29 3.79
4931 10552 1.775385 TCCGATCCTACATGACAGCA 58.225 50.000 0.00 0.00 0.00 4.41
4932 10553 2.036475 ACATCCGATCCTACATGACAGC 59.964 50.000 0.00 0.00 0.00 4.40
4933 10554 3.319122 TGACATCCGATCCTACATGACAG 59.681 47.826 0.00 0.00 0.00 3.51
4934 10555 3.295973 TGACATCCGATCCTACATGACA 58.704 45.455 0.00 0.00 0.00 3.58
4935 10556 3.305676 CCTGACATCCGATCCTACATGAC 60.306 52.174 0.00 0.00 0.00 3.06
4936 10557 2.893489 CCTGACATCCGATCCTACATGA 59.107 50.000 0.00 0.00 0.00 3.07
4937 10558 2.893489 TCCTGACATCCGATCCTACATG 59.107 50.000 0.00 0.00 0.00 3.21
4938 10559 3.244887 TCCTGACATCCGATCCTACAT 57.755 47.619 0.00 0.00 0.00 2.29
4939 10560 2.748209 TCCTGACATCCGATCCTACA 57.252 50.000 0.00 0.00 0.00 2.74
4940 10561 4.402056 TTTTCCTGACATCCGATCCTAC 57.598 45.455 0.00 0.00 0.00 3.18
4941 10562 6.075315 TCTATTTTCCTGACATCCGATCCTA 58.925 40.000 0.00 0.00 0.00 2.94
4942 10563 4.901849 TCTATTTTCCTGACATCCGATCCT 59.098 41.667 0.00 0.00 0.00 3.24
4943 10564 5.215252 TCTATTTTCCTGACATCCGATCC 57.785 43.478 0.00 0.00 0.00 3.36
4944 10565 6.090088 CGAATCTATTTTCCTGACATCCGATC 59.910 42.308 0.00 0.00 0.00 3.69
4945 10566 5.928839 CGAATCTATTTTCCTGACATCCGAT 59.071 40.000 0.00 0.00 0.00 4.18
4946 10567 5.289595 CGAATCTATTTTCCTGACATCCGA 58.710 41.667 0.00 0.00 0.00 4.55
4947 10568 4.449068 CCGAATCTATTTTCCTGACATCCG 59.551 45.833 0.00 0.00 0.00 4.18
4948 10569 5.611374 TCCGAATCTATTTTCCTGACATCC 58.389 41.667 0.00 0.00 0.00 3.51
4949 10570 8.307483 TCTATCCGAATCTATTTTCCTGACATC 58.693 37.037 0.00 0.00 0.00 3.06
4950 10571 8.195165 TCTATCCGAATCTATTTTCCTGACAT 57.805 34.615 0.00 0.00 0.00 3.06
4951 10572 7.505923 TCTCTATCCGAATCTATTTTCCTGACA 59.494 37.037 0.00 0.00 0.00 3.58
4952 10573 7.887381 TCTCTATCCGAATCTATTTTCCTGAC 58.113 38.462 0.00 0.00 0.00 3.51
4953 10574 8.478775 TTCTCTATCCGAATCTATTTTCCTGA 57.521 34.615 0.00 0.00 0.00 3.86
4954 10575 7.330700 GCTTCTCTATCCGAATCTATTTTCCTG 59.669 40.741 0.00 0.00 0.00 3.86
4955 10576 7.382898 GCTTCTCTATCCGAATCTATTTTCCT 58.617 38.462 0.00 0.00 0.00 3.36
4956 10577 6.309251 CGCTTCTCTATCCGAATCTATTTTCC 59.691 42.308 0.00 0.00 0.00 3.13
4957 10578 6.309251 CCGCTTCTCTATCCGAATCTATTTTC 59.691 42.308 0.00 0.00 0.00 2.29
4958 10579 6.159988 CCGCTTCTCTATCCGAATCTATTTT 58.840 40.000 0.00 0.00 0.00 1.82
4959 10580 5.336849 CCCGCTTCTCTATCCGAATCTATTT 60.337 44.000 0.00 0.00 0.00 1.40
4960 10581 4.158764 CCCGCTTCTCTATCCGAATCTATT 59.841 45.833 0.00 0.00 0.00 1.73
4961 10582 3.697045 CCCGCTTCTCTATCCGAATCTAT 59.303 47.826 0.00 0.00 0.00 1.98
4962 10583 3.082548 CCCGCTTCTCTATCCGAATCTA 58.917 50.000 0.00 0.00 0.00 1.98
4963 10584 1.889829 CCCGCTTCTCTATCCGAATCT 59.110 52.381 0.00 0.00 0.00 2.40
4964 10585 1.887198 TCCCGCTTCTCTATCCGAATC 59.113 52.381 0.00 0.00 0.00 2.52
4965 10586 1.996798 TCCCGCTTCTCTATCCGAAT 58.003 50.000 0.00 0.00 0.00 3.34
4966 10587 1.887198 GATCCCGCTTCTCTATCCGAA 59.113 52.381 0.00 0.00 0.00 4.30
4967 10588 1.535833 GATCCCGCTTCTCTATCCGA 58.464 55.000 0.00 0.00 0.00 4.55
4968 10589 0.528470 GGATCCCGCTTCTCTATCCG 59.472 60.000 0.00 0.00 0.00 4.18
4969 10590 1.822371 GAGGATCCCGCTTCTCTATCC 59.178 57.143 8.55 0.00 37.05 2.59
4970 10591 2.520069 TGAGGATCCCGCTTCTCTATC 58.480 52.381 8.55 0.00 0.00 2.08
4971 10592 2.685106 TGAGGATCCCGCTTCTCTAT 57.315 50.000 8.55 0.00 0.00 1.98
4972 10593 2.311463 CTTGAGGATCCCGCTTCTCTA 58.689 52.381 8.55 0.00 0.00 2.43
4973 10594 1.118838 CTTGAGGATCCCGCTTCTCT 58.881 55.000 8.55 0.00 0.00 3.10
4974 10595 0.105778 CCTTGAGGATCCCGCTTCTC 59.894 60.000 8.55 0.00 37.39 2.87
4975 10596 1.977293 GCCTTGAGGATCCCGCTTCT 61.977 60.000 8.55 0.00 37.39 2.85
4976 10597 1.524849 GCCTTGAGGATCCCGCTTC 60.525 63.158 8.55 0.00 37.39 3.86
4977 10598 2.262774 CTGCCTTGAGGATCCCGCTT 62.263 60.000 8.55 0.00 37.39 4.68
4978 10599 2.688666 TGCCTTGAGGATCCCGCT 60.689 61.111 8.55 0.00 37.39 5.52
4979 10600 2.203126 CTGCCTTGAGGATCCCGC 60.203 66.667 8.55 1.09 37.39 6.13
4980 10601 2.370445 ACCTGCCTTGAGGATCCCG 61.370 63.158 8.55 0.00 36.51 5.14
4981 10602 1.225704 CACCTGCCTTGAGGATCCC 59.774 63.158 8.55 0.11 36.51 3.85
4982 10603 1.452833 GCACCTGCCTTGAGGATCC 60.453 63.158 2.48 2.48 36.51 3.36
4983 10604 0.034670 AAGCACCTGCCTTGAGGATC 60.035 55.000 0.06 0.00 43.38 3.36
4984 10605 0.323178 CAAGCACCTGCCTTGAGGAT 60.323 55.000 0.06 0.00 43.38 3.24
4985 10606 1.073722 CAAGCACCTGCCTTGAGGA 59.926 57.895 0.06 0.00 43.38 3.71
4986 10607 1.975407 CCAAGCACCTGCCTTGAGG 60.975 63.158 2.93 0.00 43.38 3.86
4987 10608 0.538057 TTCCAAGCACCTGCCTTGAG 60.538 55.000 2.93 0.00 43.38 3.02
4988 10609 0.106268 TTTCCAAGCACCTGCCTTGA 60.106 50.000 2.93 0.00 43.38 3.02
4989 10610 0.316204 CTTTCCAAGCACCTGCCTTG 59.684 55.000 0.00 0.00 43.38 3.61
4990 10611 0.185901 TCTTTCCAAGCACCTGCCTT 59.814 50.000 0.00 0.00 43.38 4.35
4991 10612 0.185901 TTCTTTCCAAGCACCTGCCT 59.814 50.000 0.00 0.00 43.38 4.75
4992 10613 1.039856 TTTCTTTCCAAGCACCTGCC 58.960 50.000 0.00 0.00 43.38 4.85
4993 10614 2.888834 TTTTCTTTCCAAGCACCTGC 57.111 45.000 0.00 0.00 42.49 4.85
4994 10615 4.114794 CACTTTTTCTTTCCAAGCACCTG 58.885 43.478 0.00 0.00 0.00 4.00
4995 10616 3.769300 ACACTTTTTCTTTCCAAGCACCT 59.231 39.130 0.00 0.00 0.00 4.00
4996 10617 4.123497 ACACTTTTTCTTTCCAAGCACC 57.877 40.909 0.00 0.00 0.00 5.01
4997 10618 7.168135 CAGATTACACTTTTTCTTTCCAAGCAC 59.832 37.037 0.00 0.00 0.00 4.40
4998 10619 7.068103 TCAGATTACACTTTTTCTTTCCAAGCA 59.932 33.333 0.00 0.00 0.00 3.91
4999 10620 7.425606 TCAGATTACACTTTTTCTTTCCAAGC 58.574 34.615 0.00 0.00 0.00 4.01
5000 10621 9.403110 CATCAGATTACACTTTTTCTTTCCAAG 57.597 33.333 0.00 0.00 0.00 3.61
5001 10622 8.912988 ACATCAGATTACACTTTTTCTTTCCAA 58.087 29.630 0.00 0.00 0.00 3.53
5002 10623 8.463930 ACATCAGATTACACTTTTTCTTTCCA 57.536 30.769 0.00 0.00 0.00 3.53
5033 10654 9.886132 TCTACTCTTTACTTCAACTTTTTCAGT 57.114 29.630 0.00 0.00 37.30 3.41
5038 10659 8.994170 GCATCTCTACTCTTTACTTCAACTTTT 58.006 33.333 0.00 0.00 0.00 2.27
5039 10660 8.150945 TGCATCTCTACTCTTTACTTCAACTTT 58.849 33.333 0.00 0.00 0.00 2.66
5040 10661 7.671302 TGCATCTCTACTCTTTACTTCAACTT 58.329 34.615 0.00 0.00 0.00 2.66
5041 10662 7.233389 TGCATCTCTACTCTTTACTTCAACT 57.767 36.000 0.00 0.00 0.00 3.16
5042 10663 9.757227 ATATGCATCTCTACTCTTTACTTCAAC 57.243 33.333 0.19 0.00 0.00 3.18
5043 10664 9.755804 CATATGCATCTCTACTCTTTACTTCAA 57.244 33.333 0.19 0.00 0.00 2.69
5044 10665 8.918116 ACATATGCATCTCTACTCTTTACTTCA 58.082 33.333 0.19 0.00 0.00 3.02
5052 10673 9.973661 ACTCTAATACATATGCATCTCTACTCT 57.026 33.333 0.19 0.00 0.00 3.24
5079 10700 9.877178 GGTCTCATCAAGAAATAGAAAGTAGAA 57.123 33.333 0.00 0.00 35.21 2.10
5080 10701 8.478877 GGGTCTCATCAAGAAATAGAAAGTAGA 58.521 37.037 0.00 0.00 35.21 2.59
5081 10702 8.260818 TGGGTCTCATCAAGAAATAGAAAGTAG 58.739 37.037 0.00 0.00 35.21 2.57
5082 10703 8.146053 TGGGTCTCATCAAGAAATAGAAAGTA 57.854 34.615 0.00 0.00 35.21 2.24
5083 10704 7.020827 TGGGTCTCATCAAGAAATAGAAAGT 57.979 36.000 0.00 0.00 35.21 2.66
5084 10705 8.517062 AATGGGTCTCATCAAGAAATAGAAAG 57.483 34.615 0.00 0.00 35.21 2.62
5085 10706 9.618890 CTAATGGGTCTCATCAAGAAATAGAAA 57.381 33.333 0.00 0.00 35.21 2.52
5086 10707 8.772250 ACTAATGGGTCTCATCAAGAAATAGAA 58.228 33.333 2.75 0.00 35.21 2.10
5087 10708 8.324191 ACTAATGGGTCTCATCAAGAAATAGA 57.676 34.615 2.75 0.00 35.21 1.98
5088 10709 9.703892 CTACTAATGGGTCTCATCAAGAAATAG 57.296 37.037 2.75 0.00 35.21 1.73
5089 10710 9.213777 ACTACTAATGGGTCTCATCAAGAAATA 57.786 33.333 2.75 0.00 35.21 1.40
5090 10711 8.095452 ACTACTAATGGGTCTCATCAAGAAAT 57.905 34.615 2.75 0.00 35.21 2.17
5091 10712 7.496346 ACTACTAATGGGTCTCATCAAGAAA 57.504 36.000 2.75 0.00 35.21 2.52
5092 10713 7.839705 ACTACTACTAATGGGTCTCATCAAGAA 59.160 37.037 2.75 0.00 35.21 2.52
5093 10714 7.355101 ACTACTACTAATGGGTCTCATCAAGA 58.645 38.462 2.75 0.00 34.44 3.02
5094 10715 7.589958 ACTACTACTAATGGGTCTCATCAAG 57.410 40.000 0.00 0.00 34.44 3.02
5095 10716 7.973048 AACTACTACTAATGGGTCTCATCAA 57.027 36.000 0.00 0.00 34.44 2.57
5096 10717 7.399191 ACAAACTACTACTAATGGGTCTCATCA 59.601 37.037 0.00 0.00 34.44 3.07
5097 10718 7.783042 ACAAACTACTACTAATGGGTCTCATC 58.217 38.462 0.00 0.00 34.44 2.92
5098 10719 7.735326 ACAAACTACTACTAATGGGTCTCAT 57.265 36.000 0.00 0.00 37.79 2.90
5099 10720 8.834004 ATACAAACTACTACTAATGGGTCTCA 57.166 34.615 0.00 0.00 0.00 3.27
5100 10721 9.530633 CAATACAAACTACTACTAATGGGTCTC 57.469 37.037 0.00 0.00 0.00 3.36
5101 10722 8.483758 CCAATACAAACTACTACTAATGGGTCT 58.516 37.037 0.00 0.00 0.00 3.85
5102 10723 7.713942 CCCAATACAAACTACTACTAATGGGTC 59.286 40.741 0.00 0.00 38.20 4.46
5103 10724 7.366191 CCCCAATACAAACTACTACTAATGGGT 60.366 40.741 0.00 0.00 40.77 4.51
5104 10725 6.996282 CCCCAATACAAACTACTACTAATGGG 59.004 42.308 0.00 0.00 41.78 4.00
5105 10726 7.798071 TCCCCAATACAAACTACTACTAATGG 58.202 38.462 0.00 0.00 0.00 3.16
5106 10727 8.701895 TCTCCCCAATACAAACTACTACTAATG 58.298 37.037 0.00 0.00 0.00 1.90
5107 10728 8.849543 TCTCCCCAATACAAACTACTACTAAT 57.150 34.615 0.00 0.00 0.00 1.73
5108 10729 8.117956 TCTCTCCCCAATACAAACTACTACTAA 58.882 37.037 0.00 0.00 0.00 2.24
5109 10730 7.645942 TCTCTCCCCAATACAAACTACTACTA 58.354 38.462 0.00 0.00 0.00 1.82
5110 10731 6.500336 TCTCTCCCCAATACAAACTACTACT 58.500 40.000 0.00 0.00 0.00 2.57
5111 10732 6.786967 TCTCTCCCCAATACAAACTACTAC 57.213 41.667 0.00 0.00 0.00 2.73
5112 10733 7.801893 TTTCTCTCCCCAATACAAACTACTA 57.198 36.000 0.00 0.00 0.00 1.82
5113 10734 6.697641 TTTCTCTCCCCAATACAAACTACT 57.302 37.500 0.00 0.00 0.00 2.57
5114 10735 7.610305 TGATTTTCTCTCCCCAATACAAACTAC 59.390 37.037 0.00 0.00 0.00 2.73
5115 10736 7.695055 TGATTTTCTCTCCCCAATACAAACTA 58.305 34.615 0.00 0.00 0.00 2.24
5116 10737 6.552008 TGATTTTCTCTCCCCAATACAAACT 58.448 36.000 0.00 0.00 0.00 2.66
5117 10738 6.434340 ACTGATTTTCTCTCCCCAATACAAAC 59.566 38.462 0.00 0.00 0.00 2.93
5118 10739 6.552008 ACTGATTTTCTCTCCCCAATACAAA 58.448 36.000 0.00 0.00 0.00 2.83
5119 10740 6.139679 ACTGATTTTCTCTCCCCAATACAA 57.860 37.500 0.00 0.00 0.00 2.41
5120 10741 5.779241 ACTGATTTTCTCTCCCCAATACA 57.221 39.130 0.00 0.00 0.00 2.29
5123 10744 9.359653 CAATTATACTGATTTTCTCTCCCCAAT 57.640 33.333 0.00 0.00 0.00 3.16
5124 10745 7.285401 GCAATTATACTGATTTTCTCTCCCCAA 59.715 37.037 0.00 0.00 0.00 4.12
5125 10746 6.772716 GCAATTATACTGATTTTCTCTCCCCA 59.227 38.462 0.00 0.00 0.00 4.96
5126 10747 6.207614 GGCAATTATACTGATTTTCTCTCCCC 59.792 42.308 0.00 0.00 0.00 4.81
5127 10748 7.001073 AGGCAATTATACTGATTTTCTCTCCC 58.999 38.462 0.00 0.00 0.00 4.30
5128 10749 7.716998 TGAGGCAATTATACTGATTTTCTCTCC 59.283 37.037 0.00 0.00 0.00 3.71
5129 10750 8.668510 TGAGGCAATTATACTGATTTTCTCTC 57.331 34.615 0.00 0.00 0.00 3.20
5130 10751 9.118300 CTTGAGGCAATTATACTGATTTTCTCT 57.882 33.333 0.00 0.00 0.00 3.10
5131 10752 7.859875 GCTTGAGGCAATTATACTGATTTTCTC 59.140 37.037 0.00 0.00 41.35 2.87
5132 10753 7.559170 AGCTTGAGGCAATTATACTGATTTTCT 59.441 33.333 0.00 0.00 44.79 2.52
5133 10754 7.710896 AGCTTGAGGCAATTATACTGATTTTC 58.289 34.615 0.00 0.00 44.79 2.29
5134 10755 7.651027 AGCTTGAGGCAATTATACTGATTTT 57.349 32.000 0.00 0.00 44.79 1.82
5135 10756 7.995488 AGTAGCTTGAGGCAATTATACTGATTT 59.005 33.333 0.00 0.00 44.79 2.17
5136 10757 7.512992 AGTAGCTTGAGGCAATTATACTGATT 58.487 34.615 0.00 0.00 44.79 2.57
5137 10758 7.072263 AGTAGCTTGAGGCAATTATACTGAT 57.928 36.000 0.00 0.00 44.79 2.90
5138 10759 6.485830 AGTAGCTTGAGGCAATTATACTGA 57.514 37.500 0.00 0.00 44.79 3.41
5139 10760 7.559590 AAAGTAGCTTGAGGCAATTATACTG 57.440 36.000 0.00 0.00 44.79 2.74
5140 10761 8.581253 AAAAAGTAGCTTGAGGCAATTATACT 57.419 30.769 0.00 0.00 44.79 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.