Multiple sequence alignment - TraesCS2A01G331600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G331600 chr2A 100.000 4153 0 0 1 4153 564504563 564500411 0.000000e+00 7670.0
1 TraesCS2A01G331600 chr2A 73.057 386 66 24 110 470 564589099 564588727 7.350000e-18 102.0
2 TraesCS2A01G331600 chr2D 89.853 3341 168 71 675 3953 423872114 423875345 0.000000e+00 4133.0
3 TraesCS2A01G331600 chr2D 83.857 223 18 10 471 688 423871864 423872073 3.280000e-46 196.0
4 TraesCS2A01G331600 chr2D 93.023 86 5 1 4069 4153 423875350 423875435 1.570000e-24 124.0
5 TraesCS2A01G331600 chr2D 96.154 52 2 0 1 52 423871407 423871458 7.400000e-13 86.1
6 TraesCS2A01G331600 chr2B 88.562 1871 105 54 584 2393 497852337 497854159 0.000000e+00 2169.0
7 TraesCS2A01G331600 chr2B 91.913 1286 66 11 2390 3650 497854271 497855543 0.000000e+00 1764.0
8 TraesCS2A01G331600 chr2B 80.247 243 30 13 3690 3917 497855548 497855787 2.570000e-37 167.0
9 TraesCS2A01G331600 chr2B 91.150 113 9 1 475 586 497850411 497850523 7.190000e-33 152.0
10 TraesCS2A01G331600 chr7B 83.333 750 78 19 985 1731 732775049 732774344 0.000000e+00 649.0
11 TraesCS2A01G331600 chr7B 78.554 401 70 11 1745 2143 583990292 583990678 2.480000e-62 250.0
12 TraesCS2A01G331600 chr7A 78.107 507 82 19 1745 2243 622335283 622335768 1.130000e-75 294.0
13 TraesCS2A01G331600 chr7A 91.589 107 9 0 3958 4064 163025780 163025674 9.300000e-32 148.0
14 TraesCS2A01G331600 chr7A 83.030 165 17 7 1200 1354 622334344 622334507 5.600000e-29 139.0
15 TraesCS2A01G331600 chr6D 93.878 147 9 0 1207 1353 256722652 256722798 5.400000e-54 222.0
16 TraesCS2A01G331600 chr6D 98.077 52 1 0 1001 1052 256722450 256722501 1.590000e-14 91.6
17 TraesCS2A01G331600 chr6B 93.878 147 9 0 1207 1353 372571950 372572096 5.400000e-54 222.0
18 TraesCS2A01G331600 chr6B 98.077 52 1 0 1001 1052 372571754 372571805 1.590000e-14 91.6
19 TraesCS2A01G331600 chr6A 93.878 147 9 0 1207 1353 366037021 366036875 5.400000e-54 222.0
20 TraesCS2A01G331600 chr6A 89.655 116 12 0 3951 4066 459909972 459910087 9.300000e-32 148.0
21 TraesCS2A01G331600 chr6A 98.077 52 1 0 1001 1052 366037218 366037167 1.590000e-14 91.6
22 TraesCS2A01G331600 chr4A 89.744 117 12 0 3958 4074 638172427 638172311 2.590000e-32 150.0
23 TraesCS2A01G331600 chr4A 100.000 33 0 0 1135 1167 30761495 30761463 1.250000e-05 62.1
24 TraesCS2A01G331600 chr3B 91.589 107 9 0 3958 4064 3038133 3038027 9.300000e-32 148.0
25 TraesCS2A01G331600 chr3B 89.474 114 12 0 3950 4063 308390933 308391046 1.200000e-30 145.0
26 TraesCS2A01G331600 chr3B 77.070 157 27 6 1728 1879 783414066 783414218 9.570000e-12 82.4
27 TraesCS2A01G331600 chr1A 88.793 116 13 0 3954 4069 474447276 474447161 4.330000e-30 143.0
28 TraesCS2A01G331600 chr1A 88.793 116 13 0 3948 4063 491131036 491131151 4.330000e-30 143.0
29 TraesCS2A01G331600 chr5B 88.136 118 14 0 3958 4075 45943964 45943847 1.560000e-29 141.0
30 TraesCS2A01G331600 chr4D 84.828 145 16 5 3939 4079 209212118 209212260 1.560000e-29 141.0
31 TraesCS2A01G331600 chr7D 90.411 73 5 1 981 1053 540631485 540631555 1.230000e-15 95.3
32 TraesCS2A01G331600 chr7D 83.838 99 16 0 1745 1843 540636159 540636257 1.230000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G331600 chr2A 564500411 564504563 4152 True 7670.000 7670 100.00000 1 4153 1 chr2A.!!$R1 4152
1 TraesCS2A01G331600 chr2D 423871407 423875435 4028 False 1134.775 4133 90.72175 1 4153 4 chr2D.!!$F1 4152
2 TraesCS2A01G331600 chr2B 497850411 497855787 5376 False 1063.000 2169 87.96800 475 3917 4 chr2B.!!$F1 3442
3 TraesCS2A01G331600 chr7B 732774344 732775049 705 True 649.000 649 83.33300 985 1731 1 chr7B.!!$R1 746
4 TraesCS2A01G331600 chr7A 622334344 622335768 1424 False 216.500 294 80.56850 1200 2243 2 chr7A.!!$F1 1043

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.164647 CAGCACGAGAAAAGAAGCCG 59.835 55.0 0.00 0.00 0.00 5.52 F
1155 3142 0.173708 GCGGAGATCTGTCTTTCCGT 59.826 55.0 17.14 0.00 41.47 4.69 F
1356 3352 0.248289 AGATTTGGGACACGGTACCG 59.752 55.0 32.22 32.22 39.98 4.02 F
1843 4298 0.620556 ATCACCAGGTACTTGCCCAG 59.379 55.0 0.00 0.00 34.60 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 4345 0.320771 CACCGTGCTCAGCTAGGTTT 60.321 55.000 13.01 0.0 37.05 3.27 R
2683 5298 1.016627 GAAGCAAGGCATATGCACGA 58.983 50.000 28.07 0.0 46.22 4.35 R
3009 5624 1.777878 TCAGGGCCAGGAACAAAGTAA 59.222 47.619 6.18 0.0 0.00 2.24 R
3171 5786 3.380954 TGCCATGCGATTTTGTACATCAT 59.619 39.130 0.00 0.0 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.971676 CCTACGTCCAAGGGAGTCA 58.028 57.895 0.00 0.00 29.39 3.41
54 55 0.531200 CCTACGTCCAAGGGAGTCAC 59.469 60.000 0.00 0.00 29.39 3.67
55 56 1.254026 CTACGTCCAAGGGAGTCACA 58.746 55.000 0.00 0.00 29.39 3.58
56 57 1.616865 CTACGTCCAAGGGAGTCACAA 59.383 52.381 0.00 0.00 29.39 3.33
57 58 1.056660 ACGTCCAAGGGAGTCACAAT 58.943 50.000 0.00 0.00 29.39 2.71
58 59 1.420138 ACGTCCAAGGGAGTCACAATT 59.580 47.619 0.00 0.00 29.39 2.32
61 62 2.814336 GTCCAAGGGAGTCACAATTCAC 59.186 50.000 0.00 0.00 29.39 3.18
62 63 2.711009 TCCAAGGGAGTCACAATTCACT 59.289 45.455 0.00 0.00 0.00 3.41
63 64 3.077359 CCAAGGGAGTCACAATTCACTC 58.923 50.000 0.00 1.53 38.71 3.51
64 65 3.244700 CCAAGGGAGTCACAATTCACTCT 60.245 47.826 0.00 0.00 39.30 3.24
65 66 4.392940 CAAGGGAGTCACAATTCACTCTT 58.607 43.478 0.00 0.00 39.30 2.85
66 67 4.013267 AGGGAGTCACAATTCACTCTTG 57.987 45.455 0.00 0.00 39.30 3.02
67 68 3.392616 AGGGAGTCACAATTCACTCTTGT 59.607 43.478 0.00 0.00 39.30 3.16
68 69 4.137543 GGGAGTCACAATTCACTCTTGTT 58.862 43.478 8.09 0.00 39.30 2.83
69 70 4.580580 GGGAGTCACAATTCACTCTTGTTT 59.419 41.667 8.09 0.00 39.30 2.83
70 71 5.506317 GGGAGTCACAATTCACTCTTGTTTG 60.506 44.000 8.09 0.00 39.30 2.93
71 72 5.066505 GGAGTCACAATTCACTCTTGTTTGT 59.933 40.000 8.09 0.00 39.30 2.83
72 73 6.124088 AGTCACAATTCACTCTTGTTTGTC 57.876 37.500 0.00 0.00 34.69 3.18
73 74 5.066505 AGTCACAATTCACTCTTGTTTGTCC 59.933 40.000 0.00 0.00 34.69 4.02
74 75 4.946772 TCACAATTCACTCTTGTTTGTCCA 59.053 37.500 0.00 0.00 34.69 4.02
75 76 5.593909 TCACAATTCACTCTTGTTTGTCCAT 59.406 36.000 0.00 0.00 34.69 3.41
76 77 5.916883 CACAATTCACTCTTGTTTGTCCATC 59.083 40.000 0.00 0.00 34.69 3.51
77 78 5.829924 ACAATTCACTCTTGTTTGTCCATCT 59.170 36.000 0.00 0.00 33.10 2.90
78 79 6.998074 ACAATTCACTCTTGTTTGTCCATCTA 59.002 34.615 0.00 0.00 33.10 1.98
79 80 7.667219 ACAATTCACTCTTGTTTGTCCATCTAT 59.333 33.333 0.00 0.00 33.10 1.98
80 81 7.856145 ATTCACTCTTGTTTGTCCATCTATC 57.144 36.000 0.00 0.00 0.00 2.08
81 82 6.611613 TCACTCTTGTTTGTCCATCTATCT 57.388 37.500 0.00 0.00 0.00 1.98
82 83 6.634805 TCACTCTTGTTTGTCCATCTATCTC 58.365 40.000 0.00 0.00 0.00 2.75
83 84 5.814705 CACTCTTGTTTGTCCATCTATCTCC 59.185 44.000 0.00 0.00 0.00 3.71
84 85 5.485353 ACTCTTGTTTGTCCATCTATCTCCA 59.515 40.000 0.00 0.00 0.00 3.86
85 86 6.013379 ACTCTTGTTTGTCCATCTATCTCCAA 60.013 38.462 0.00 0.00 0.00 3.53
86 87 6.778821 TCTTGTTTGTCCATCTATCTCCAAA 58.221 36.000 0.00 0.00 0.00 3.28
87 88 7.230747 TCTTGTTTGTCCATCTATCTCCAAAA 58.769 34.615 0.00 0.00 0.00 2.44
88 89 7.391554 TCTTGTTTGTCCATCTATCTCCAAAAG 59.608 37.037 0.00 0.00 0.00 2.27
100 101 3.146066 TCTCCAAAAGTACATGGTGCAC 58.854 45.455 8.80 8.80 37.94 4.57
104 105 4.343526 TCCAAAAGTACATGGTGCACAATT 59.656 37.500 20.43 6.65 37.94 2.32
108 109 6.832520 AAAGTACATGGTGCACAATTATCA 57.167 33.333 20.43 6.42 0.00 2.15
122 123 9.612066 TGCACAATTATCAATGACACTATAGAA 57.388 29.630 6.78 0.00 0.00 2.10
129 130 6.471233 TCAATGACACTATAGAAGGTGGAG 57.529 41.667 6.78 0.00 37.72 3.86
132 133 4.684724 TGACACTATAGAAGGTGGAGGTT 58.315 43.478 6.78 0.00 37.72 3.50
134 135 4.426704 ACACTATAGAAGGTGGAGGTTGT 58.573 43.478 6.78 0.00 37.72 3.32
139 140 1.215423 AGAAGGTGGAGGTTGTTTGCT 59.785 47.619 0.00 0.00 0.00 3.91
140 141 2.031870 GAAGGTGGAGGTTGTTTGCTT 58.968 47.619 0.00 0.00 0.00 3.91
141 142 3.117663 AGAAGGTGGAGGTTGTTTGCTTA 60.118 43.478 0.00 0.00 0.00 3.09
142 143 3.525800 AGGTGGAGGTTGTTTGCTTAT 57.474 42.857 0.00 0.00 0.00 1.73
144 145 3.153919 GGTGGAGGTTGTTTGCTTATCA 58.846 45.455 0.00 0.00 0.00 2.15
158 159 4.928661 GCTTATCAGCACGAGAAAAGAA 57.071 40.909 0.00 0.00 46.49 2.52
160 161 4.726306 GCTTATCAGCACGAGAAAAGAAGC 60.726 45.833 0.00 0.00 46.49 3.86
161 162 1.512926 TCAGCACGAGAAAAGAAGCC 58.487 50.000 0.00 0.00 0.00 4.35
162 163 0.164647 CAGCACGAGAAAAGAAGCCG 59.835 55.000 0.00 0.00 0.00 5.52
163 164 0.951040 AGCACGAGAAAAGAAGCCGG 60.951 55.000 0.00 0.00 0.00 6.13
164 165 0.949105 GCACGAGAAAAGAAGCCGGA 60.949 55.000 5.05 0.00 0.00 5.14
165 166 0.790814 CACGAGAAAAGAAGCCGGAC 59.209 55.000 5.05 0.00 0.00 4.79
166 167 0.391597 ACGAGAAAAGAAGCCGGACA 59.608 50.000 5.05 0.00 0.00 4.02
167 168 0.790814 CGAGAAAAGAAGCCGGACAC 59.209 55.000 5.05 0.00 0.00 3.67
168 169 1.605712 CGAGAAAAGAAGCCGGACACT 60.606 52.381 5.05 0.00 0.00 3.55
169 170 2.352421 CGAGAAAAGAAGCCGGACACTA 60.352 50.000 5.05 0.00 0.00 2.74
170 171 2.994578 GAGAAAAGAAGCCGGACACTAC 59.005 50.000 5.05 0.00 0.00 2.73
171 172 2.074576 GAAAAGAAGCCGGACACTACC 58.925 52.381 5.05 0.00 0.00 3.18
172 173 1.053424 AAAGAAGCCGGACACTACCA 58.947 50.000 5.05 0.00 0.00 3.25
173 174 1.053424 AAGAAGCCGGACACTACCAA 58.947 50.000 5.05 0.00 0.00 3.67
174 175 1.053424 AGAAGCCGGACACTACCAAA 58.947 50.000 5.05 0.00 0.00 3.28
175 176 1.418637 AGAAGCCGGACACTACCAAAA 59.581 47.619 5.05 0.00 0.00 2.44
176 177 1.534163 GAAGCCGGACACTACCAAAAC 59.466 52.381 5.05 0.00 0.00 2.43
177 178 0.763035 AGCCGGACACTACCAAAACT 59.237 50.000 5.05 0.00 0.00 2.66
182 183 2.806244 CGGACACTACCAAAACTCCAAG 59.194 50.000 0.00 0.00 0.00 3.61
185 186 4.444449 GGACACTACCAAAACTCCAAGAGT 60.444 45.833 0.00 0.00 45.64 3.24
195 196 7.988028 ACCAAAACTCCAAGAGTAGCTATATTC 59.012 37.037 0.00 0.00 42.59 1.75
199 200 7.104974 ACTCCAAGAGTAGCTATATTCCCTA 57.895 40.000 0.00 0.00 41.51 3.53
200 201 6.949463 ACTCCAAGAGTAGCTATATTCCCTAC 59.051 42.308 0.00 0.00 41.51 3.18
203 204 7.787904 TCCAAGAGTAGCTATATTCCCTACAAA 59.212 37.037 0.00 0.00 35.15 2.83
204 205 8.429641 CCAAGAGTAGCTATATTCCCTACAAAA 58.570 37.037 0.00 0.00 35.15 2.44
205 206 9.262358 CAAGAGTAGCTATATTCCCTACAAAAC 57.738 37.037 0.00 0.00 35.15 2.43
206 207 8.548880 AGAGTAGCTATATTCCCTACAAAACA 57.451 34.615 0.00 0.00 35.15 2.83
207 208 9.160412 AGAGTAGCTATATTCCCTACAAAACAT 57.840 33.333 0.00 0.00 35.15 2.71
208 209 9.780186 GAGTAGCTATATTCCCTACAAAACATT 57.220 33.333 0.00 0.00 35.15 2.71
212 213 9.646522 AGCTATATTCCCTACAAAACATTTCAT 57.353 29.630 0.00 0.00 0.00 2.57
213 214 9.899226 GCTATATTCCCTACAAAACATTTCATC 57.101 33.333 0.00 0.00 0.00 2.92
216 217 6.588719 TTCCCTACAAAACATTTCATCCTG 57.411 37.500 0.00 0.00 0.00 3.86
217 218 5.886609 TCCCTACAAAACATTTCATCCTGA 58.113 37.500 0.00 0.00 0.00 3.86
218 219 6.310941 TCCCTACAAAACATTTCATCCTGAA 58.689 36.000 0.00 0.00 34.03 3.02
235 236 7.388776 TCATCCTGAAAGTGTCAAAGATAACAG 59.611 37.037 0.00 0.00 35.22 3.16
237 238 7.279615 TCCTGAAAGTGTCAAAGATAACAGAA 58.720 34.615 0.00 0.00 35.22 3.02
238 239 7.226720 TCCTGAAAGTGTCAAAGATAACAGAAC 59.773 37.037 0.00 0.00 35.22 3.01
239 240 7.012327 CCTGAAAGTGTCAAAGATAACAGAACA 59.988 37.037 0.00 0.00 35.22 3.18
240 241 8.450578 TGAAAGTGTCAAAGATAACAGAACAT 57.549 30.769 0.00 0.00 31.51 2.71
241 242 8.902806 TGAAAGTGTCAAAGATAACAGAACATT 58.097 29.630 0.00 0.00 31.51 2.71
242 243 9.173939 GAAAGTGTCAAAGATAACAGAACATTG 57.826 33.333 0.00 0.00 0.00 2.82
243 244 7.807977 AGTGTCAAAGATAACAGAACATTGT 57.192 32.000 0.00 0.00 0.00 2.71
244 245 8.902540 AGTGTCAAAGATAACAGAACATTGTA 57.097 30.769 0.00 0.00 0.00 2.41
245 246 8.774586 AGTGTCAAAGATAACAGAACATTGTAC 58.225 33.333 0.00 0.00 0.00 2.90
246 247 8.015658 GTGTCAAAGATAACAGAACATTGTACC 58.984 37.037 0.00 0.00 0.00 3.34
247 248 7.717436 TGTCAAAGATAACAGAACATTGTACCA 59.283 33.333 0.00 0.00 0.00 3.25
248 249 8.730680 GTCAAAGATAACAGAACATTGTACCAT 58.269 33.333 0.00 0.00 0.00 3.55
249 250 9.952030 TCAAAGATAACAGAACATTGTACCATA 57.048 29.630 0.00 0.00 0.00 2.74
270 271 9.866655 ACCATATGAAGAGAATTAAATAGCCAA 57.133 29.630 3.65 0.00 0.00 4.52
275 276 8.862325 TGAAGAGAATTAAATAGCCAAACAGA 57.138 30.769 0.00 0.00 0.00 3.41
276 277 9.295825 TGAAGAGAATTAAATAGCCAAACAGAA 57.704 29.630 0.00 0.00 0.00 3.02
290 291 5.681179 GCCAAACAGAAAAGGCTTTCAACTA 60.681 40.000 13.76 0.00 42.99 2.24
298 299 9.528018 CAGAAAAGGCTTTCAACTACATAAAAA 57.472 29.630 13.76 0.00 42.99 1.94
324 325 7.456253 AGAACAACGATGATAACAAAAGATCG 58.544 34.615 0.00 0.00 36.31 3.69
326 327 7.821595 ACAACGATGATAACAAAAGATCGTA 57.178 32.000 0.00 0.00 41.54 3.43
327 328 7.672738 ACAACGATGATAACAAAAGATCGTAC 58.327 34.615 0.00 0.00 41.54 3.67
328 329 6.823678 ACGATGATAACAAAAGATCGTACC 57.176 37.500 0.00 0.00 40.77 3.34
329 330 6.334989 ACGATGATAACAAAAGATCGTACCA 58.665 36.000 0.00 0.00 40.77 3.25
331 332 8.139350 ACGATGATAACAAAAGATCGTACCATA 58.861 33.333 0.00 0.00 40.77 2.74
332 333 9.140286 CGATGATAACAAAAGATCGTACCATAT 57.860 33.333 0.00 0.00 0.00 1.78
335 336 9.476202 TGATAACAAAAGATCGTACCATATGAG 57.524 33.333 3.65 0.00 0.00 2.90
338 339 8.425577 AACAAAAGATCGTACCATATGAGAAG 57.574 34.615 3.65 0.00 0.00 2.85
339 340 7.782049 ACAAAAGATCGTACCATATGAGAAGA 58.218 34.615 3.65 0.00 0.00 2.87
340 341 8.424918 ACAAAAGATCGTACCATATGAGAAGAT 58.575 33.333 3.65 4.77 0.00 2.40
341 342 8.920665 CAAAAGATCGTACCATATGAGAAGATC 58.079 37.037 17.24 17.24 34.98 2.75
342 343 8.415950 AAAGATCGTACCATATGAGAAGATCT 57.584 34.615 19.76 19.76 43.49 2.75
343 344 8.415950 AAGATCGTACCATATGAGAAGATCTT 57.584 34.615 25.04 25.04 44.46 2.40
344 345 9.521841 AAGATCGTACCATATGAGAAGATCTTA 57.478 33.333 27.06 0.00 46.17 2.10
345 346 8.952278 AGATCGTACCATATGAGAAGATCTTAC 58.048 37.037 19.76 6.57 40.13 2.34
346 347 7.130303 TCGTACCATATGAGAAGATCTTACG 57.870 40.000 8.25 10.48 0.00 3.18
349 350 8.501580 CGTACCATATGAGAAGATCTTACGTTA 58.498 37.037 8.25 0.00 0.00 3.18
350 351 9.828852 GTACCATATGAGAAGATCTTACGTTAG 57.171 37.037 8.25 0.00 0.00 2.34
351 352 8.466617 ACCATATGAGAAGATCTTACGTTAGT 57.533 34.615 8.25 3.67 0.00 2.24
353 354 9.751542 CCATATGAGAAGATCTTACGTTAGTTT 57.248 33.333 8.25 0.00 0.00 2.66
356 357 8.838452 ATGAGAAGATCTTACGTTAGTTTACG 57.162 34.615 8.25 0.00 46.52 3.18
357 358 7.246311 TGAGAAGATCTTACGTTAGTTTACGG 58.754 38.462 8.25 0.00 45.44 4.02
359 360 7.470900 AGAAGATCTTACGTTAGTTTACGGAG 58.529 38.462 8.25 0.00 45.44 4.63
360 361 6.992063 AGATCTTACGTTAGTTTACGGAGA 57.008 37.500 0.00 0.00 45.44 3.71
361 362 7.014092 AGATCTTACGTTAGTTTACGGAGAG 57.986 40.000 0.00 0.00 45.44 3.20
362 363 5.551760 TCTTACGTTAGTTTACGGAGAGG 57.448 43.478 0.00 0.00 45.44 3.69
363 364 4.396166 TCTTACGTTAGTTTACGGAGAGGG 59.604 45.833 0.00 0.00 45.44 4.30
364 365 2.519013 ACGTTAGTTTACGGAGAGGGT 58.481 47.619 0.00 0.00 45.44 4.34
365 366 3.686016 ACGTTAGTTTACGGAGAGGGTA 58.314 45.455 0.00 0.00 45.44 3.69
366 367 4.273318 ACGTTAGTTTACGGAGAGGGTAT 58.727 43.478 0.00 0.00 45.44 2.73
367 368 4.706962 ACGTTAGTTTACGGAGAGGGTATT 59.293 41.667 0.00 0.00 45.44 1.89
368 369 5.185828 ACGTTAGTTTACGGAGAGGGTATTT 59.814 40.000 0.00 0.00 45.44 1.40
369 370 5.745769 CGTTAGTTTACGGAGAGGGTATTTC 59.254 44.000 0.00 0.00 37.86 2.17
370 371 6.405176 CGTTAGTTTACGGAGAGGGTATTTCT 60.405 42.308 0.00 0.00 37.86 2.52
371 372 7.326454 GTTAGTTTACGGAGAGGGTATTTCTT 58.674 38.462 0.00 0.00 0.00 2.52
373 374 6.776744 AGTTTACGGAGAGGGTATTTCTTTT 58.223 36.000 0.00 0.00 0.00 2.27
374 375 7.910584 AGTTTACGGAGAGGGTATTTCTTTTA 58.089 34.615 0.00 0.00 0.00 1.52
395 409 1.167851 ATTGACATGGTTGCTGGTCG 58.832 50.000 0.00 0.00 33.04 4.79
404 418 1.670811 GGTTGCTGGTCGATAATGGTG 59.329 52.381 0.00 0.00 0.00 4.17
405 419 2.356135 GTTGCTGGTCGATAATGGTGT 58.644 47.619 0.00 0.00 0.00 4.16
406 420 2.022764 TGCTGGTCGATAATGGTGTG 57.977 50.000 0.00 0.00 0.00 3.82
409 423 2.632377 CTGGTCGATAATGGTGTGCTT 58.368 47.619 0.00 0.00 0.00 3.91
415 429 5.798434 GGTCGATAATGGTGTGCTTTAAAAC 59.202 40.000 0.00 0.00 0.00 2.43
417 431 5.408909 TCGATAATGGTGTGCTTTAAAACGA 59.591 36.000 0.00 0.00 0.00 3.85
421 435 1.662026 GGTGTGCTTTAAAACGAGGCG 60.662 52.381 0.00 0.00 0.00 5.52
452 471 2.511452 CCTATCCTCAGGTGGCCGG 61.511 68.421 0.00 0.00 0.00 6.13
455 474 2.306715 TATCCTCAGGTGGCCGGCTA 62.307 60.000 28.56 19.98 0.00 3.93
468 487 2.115911 CGGCTAGCCTCGTGACTCT 61.116 63.158 30.55 0.00 0.00 3.24
477 538 2.263077 CCTCGTGACTCTTCCAAATCG 58.737 52.381 0.00 0.00 0.00 3.34
505 566 3.181497 CCAATTCAAGTTCGCCCTATGTG 60.181 47.826 0.00 0.00 0.00 3.21
578 647 0.957888 GCTCCTCCTTCTTGTGGTGC 60.958 60.000 0.00 0.00 33.07 5.01
582 2467 2.846206 TCCTCCTTCTTGTGGTGCATAT 59.154 45.455 0.00 0.00 0.00 1.78
614 2499 0.744414 CGGTGGCGTGGAGATTTCAT 60.744 55.000 0.00 0.00 0.00 2.57
615 2500 1.017387 GGTGGCGTGGAGATTTCATC 58.983 55.000 0.00 0.00 0.00 2.92
616 2501 1.407437 GGTGGCGTGGAGATTTCATCT 60.407 52.381 0.00 0.00 43.70 2.90
635 2520 7.131907 TCATCTACTAATCCCGATCCAAAAA 57.868 36.000 0.00 0.00 0.00 1.94
636 2521 6.990349 TCATCTACTAATCCCGATCCAAAAAC 59.010 38.462 0.00 0.00 0.00 2.43
637 2522 5.353938 TCTACTAATCCCGATCCAAAAACG 58.646 41.667 0.00 0.00 0.00 3.60
684 2570 3.553511 GCCGACTAGTTTCATCATCACAG 59.446 47.826 0.00 0.00 0.00 3.66
696 2636 1.073964 CATCACAGTCCAGTTCGCTG 58.926 55.000 0.00 0.00 44.59 5.18
736 2681 0.915364 ACCCCATCTTTGGAGAGCTC 59.085 55.000 5.27 5.27 46.92 4.09
739 2685 0.826715 CCATCTTTGGAGAGCTCGGA 59.173 55.000 8.37 1.91 46.92 4.55
785 2732 2.579201 CCGAGGGACAGCGACATT 59.421 61.111 0.00 0.00 0.00 2.71
859 2806 2.674754 GAACCGCCCCCAGATCAA 59.325 61.111 0.00 0.00 0.00 2.57
860 2807 1.452108 GAACCGCCCCCAGATCAAG 60.452 63.158 0.00 0.00 0.00 3.02
861 2808 1.910580 GAACCGCCCCCAGATCAAGA 61.911 60.000 0.00 0.00 0.00 3.02
862 2809 1.281925 AACCGCCCCCAGATCAAGAT 61.282 55.000 0.00 0.00 0.00 2.40
863 2810 1.072159 CCGCCCCCAGATCAAGATC 59.928 63.158 1.81 1.81 38.09 2.75
864 2811 1.699054 CCGCCCCCAGATCAAGATCA 61.699 60.000 12.21 0.00 40.22 2.92
867 2814 1.202746 GCCCCCAGATCAAGATCAGTC 60.203 57.143 12.21 0.00 40.22 3.51
878 2826 0.818296 AGATCAGTCCACCACGTAGC 59.182 55.000 0.00 0.00 0.00 3.58
894 2842 0.683504 TAGCCCACGTCTCCTTCCTC 60.684 60.000 0.00 0.00 0.00 3.71
910 2860 2.885616 TCCTCCCGAAGTAAACAGAGT 58.114 47.619 0.00 0.00 0.00 3.24
911 2861 3.236896 TCCTCCCGAAGTAAACAGAGTT 58.763 45.455 0.00 0.00 0.00 3.01
922 2872 3.903530 AAACAGAGTTGGAAATCCCCT 57.096 42.857 0.00 0.00 34.29 4.79
923 2873 3.441500 AACAGAGTTGGAAATCCCCTC 57.558 47.619 7.73 7.73 34.83 4.30
924 2874 2.637165 ACAGAGTTGGAAATCCCCTCT 58.363 47.619 11.12 11.12 41.31 3.69
1058 3045 4.767255 CACAGGTGCGCTCCCCTC 62.767 72.222 24.18 0.00 0.00 4.30
1134 3121 3.793144 CTTTGCTGCTCCCGTCGC 61.793 66.667 0.00 0.00 0.00 5.19
1148 3135 3.889044 TCGCCGCGGAGATCTGTC 61.889 66.667 33.48 7.28 0.00 3.51
1149 3136 3.893763 CGCCGCGGAGATCTGTCT 61.894 66.667 33.48 0.00 37.42 3.41
1150 3137 2.496817 GCCGCGGAGATCTGTCTT 59.503 61.111 33.48 0.00 33.97 3.01
1151 3138 1.153549 GCCGCGGAGATCTGTCTTT 60.154 57.895 33.48 0.00 33.97 2.52
1152 3139 1.148759 GCCGCGGAGATCTGTCTTTC 61.149 60.000 33.48 1.16 33.97 2.62
1153 3140 0.528684 CCGCGGAGATCTGTCTTTCC 60.529 60.000 24.07 0.00 33.97 3.13
1154 3141 0.867753 CGCGGAGATCTGTCTTTCCG 60.868 60.000 13.01 13.01 42.01 4.30
1155 3142 0.173708 GCGGAGATCTGTCTTTCCGT 59.826 55.000 17.14 0.00 41.47 4.69
1156 3143 1.799548 GCGGAGATCTGTCTTTCCGTC 60.800 57.143 17.14 8.41 41.47 4.79
1356 3352 0.248289 AGATTTGGGACACGGTACCG 59.752 55.000 32.22 32.22 39.98 4.02
1358 3354 2.808181 ATTTGGGACACGGTACCGCC 62.808 60.000 33.62 25.33 39.98 6.13
1360 3356 4.139234 GGGACACGGTACCGCCTC 62.139 72.222 33.62 25.42 44.19 4.70
1361 3357 4.139234 GGACACGGTACCGCCTCC 62.139 72.222 33.62 29.65 44.19 4.30
1408 3404 2.561478 TTGCCTTTCCTAGGTGACAC 57.439 50.000 9.08 0.00 46.61 3.67
1460 3457 6.844254 AGATCGAGTTGTCTTCTTACTGTAC 58.156 40.000 0.00 0.00 0.00 2.90
1461 3458 6.430308 AGATCGAGTTGTCTTCTTACTGTACA 59.570 38.462 0.00 0.00 0.00 2.90
1463 3460 6.436261 TCGAGTTGTCTTCTTACTGTACAAG 58.564 40.000 0.00 0.00 31.19 3.16
1481 3478 2.656560 AGAAGTTAGTACCAGCTGCG 57.343 50.000 8.66 4.27 0.00 5.18
1503 3500 2.202946 GGAAGAGGTGGCGCTAGC 60.203 66.667 15.76 15.76 44.18 3.42
1565 3568 5.870978 GGAATTAGAACTGCCGTTTGTAGTA 59.129 40.000 0.00 0.00 39.18 1.82
1610 4045 5.562506 ATCGTGACTTCATCGAGTTTCTA 57.437 39.130 0.00 0.00 34.69 2.10
1636 4081 6.661304 TGAATTAGCTCTCATCAGATAGCA 57.339 37.500 6.46 0.00 44.07 3.49
1658 4104 6.712547 AGCAACAAATGTCTAGTTTAGCTTCT 59.287 34.615 0.00 0.00 0.00 2.85
1684 4136 5.716228 TCTCATTGTCATGCCATAAACCTTT 59.284 36.000 0.00 0.00 0.00 3.11
1697 4149 6.751888 GCCATAAACCTTTGTGTCATATTCAC 59.248 38.462 2.00 2.00 36.48 3.18
1713 4166 8.660373 GTCATATTCACTTGTCAAGGTAAAGAG 58.340 37.037 16.85 2.63 0.00 2.85
1805 4260 3.397613 CTACAGGGGAGCTGCTGGC 62.398 68.421 7.01 0.00 42.19 4.85
1843 4298 0.620556 ATCACCAGGTACTTGCCCAG 59.379 55.000 0.00 0.00 34.60 4.45
1879 4334 3.243201 GCCTGGTTAGATTAAGTGCATGC 60.243 47.826 11.82 11.82 0.00 4.06
1886 4345 7.609918 TGGTTAGATTAAGTGCATGCTTTTCTA 59.390 33.333 20.33 13.91 0.00 2.10
1901 4360 4.142795 GCTTTTCTAAACCTAGCTGAGCAC 60.143 45.833 7.39 0.00 0.00 4.40
1914 4373 4.261801 AGCTGAGCACGGTGTTAATATTT 58.738 39.130 7.39 0.00 0.00 1.40
1916 4375 6.055588 AGCTGAGCACGGTGTTAATATTTAT 58.944 36.000 7.39 0.00 0.00 1.40
2108 4567 2.103094 TGGTCTCATCTTTATGGAGGCG 59.897 50.000 0.00 0.00 33.61 5.52
2191 4656 2.194201 TTAAGGCCTTTCCCTGAACG 57.806 50.000 26.08 0.00 34.80 3.95
2193 4658 0.698818 AAGGCCTTTCCCTGAACGAT 59.301 50.000 13.78 0.00 34.80 3.73
2194 4659 0.698818 AGGCCTTTCCCTGAACGATT 59.301 50.000 0.00 0.00 32.84 3.34
2195 4660 0.811281 GGCCTTTCCCTGAACGATTG 59.189 55.000 0.00 0.00 0.00 2.67
2213 4678 5.023920 CGATTGTTGTCTCATTCGATTTGG 58.976 41.667 5.46 0.00 40.95 3.28
2274 4739 6.581171 AAGAAAATTCAGGATGGTGTCTTC 57.419 37.500 0.00 0.00 36.16 2.87
2629 5244 5.648178 TCTACTCCACTTTACAACGCATA 57.352 39.130 0.00 0.00 0.00 3.14
2727 5342 2.041081 CCCATCTTACAGAAACCCCACA 59.959 50.000 0.00 0.00 0.00 4.17
2739 5354 3.945640 AACCCCACAACTTTACTGAGT 57.054 42.857 0.00 0.00 0.00 3.41
2757 5372 3.136443 TGAGTGCCTTTATATGGACCCTG 59.864 47.826 0.00 0.00 0.00 4.45
2765 5380 7.682459 TGCCTTTATATGGACCCTGATAAGATA 59.318 37.037 0.00 0.00 0.00 1.98
2802 5417 6.701937 TGACGATGTTACATAAATTTCGCTC 58.298 36.000 0.00 0.00 31.30 5.03
2838 5453 7.316393 TGGAGTAAGGAGATTCTTTTCTTCA 57.684 36.000 0.00 0.00 0.00 3.02
2858 5473 5.169992 TCATGCTGAAAAAGAGAGATCCA 57.830 39.130 0.00 0.00 0.00 3.41
2950 5565 4.301628 CATTTTCCTGCCAAGAACACTTC 58.698 43.478 0.00 0.00 0.00 3.01
2964 5579 9.161629 CCAAGAACACTTCCTTTTAACATTTTT 57.838 29.630 0.00 0.00 0.00 1.94
2973 5588 8.940768 TTCCTTTTAACATTTTTCCTGTTGAG 57.059 30.769 0.00 0.00 37.41 3.02
2978 5593 5.596836 AACATTTTTCCTGTTGAGCTGAA 57.403 34.783 0.00 0.00 35.57 3.02
3007 5622 4.697352 AGGTTACATTGCTGCTTTCACTAG 59.303 41.667 0.00 0.00 0.00 2.57
3008 5623 4.455877 GGTTACATTGCTGCTTTCACTAGT 59.544 41.667 0.00 0.00 0.00 2.57
3009 5624 5.048713 GGTTACATTGCTGCTTTCACTAGTT 60.049 40.000 0.00 0.00 0.00 2.24
3052 5667 6.022163 AGCATGGACTGATTTTTCTTCTTG 57.978 37.500 0.00 0.00 0.00 3.02
3157 5772 2.541120 GCTGCTGCGGCTAATGGAG 61.541 63.158 25.48 7.53 39.59 3.86
3371 5996 1.662629 GATGCTTCCAGTCGTGTCATG 59.337 52.381 0.00 0.00 0.00 3.07
3381 6006 4.442052 CCAGTCGTGTCATGTAGGATTCAT 60.442 45.833 0.00 0.00 0.00 2.57
3469 6094 3.640967 CCTCAAAACATTTGGGTCCTCAA 59.359 43.478 2.36 0.00 0.00 3.02
3491 6116 8.001881 TCAAGCTTTAAAGTTATTGAACACCA 57.998 30.769 20.60 6.49 38.10 4.17
3602 6227 3.329386 ACTCACTGAACATGAACCATCG 58.671 45.455 0.00 0.00 0.00 3.84
3608 6233 5.570206 CACTGAACATGAACCATCGAAAATG 59.430 40.000 0.00 0.00 0.00 2.32
3650 6279 2.167075 GCTTGTTGCTATTTGGCTGGAT 59.833 45.455 0.00 0.00 38.95 3.41
3808 6440 8.585018 CCTGTTTTCCCTTAATAATGTTTGTCT 58.415 33.333 0.00 0.00 0.00 3.41
3897 6539 1.090728 TGCTTGTTTGTCGACTGCAA 58.909 45.000 17.92 16.26 31.03 4.08
3900 6542 3.115554 GCTTGTTTGTCGACTGCAATTT 58.884 40.909 17.92 0.00 0.00 1.82
3928 6570 6.921486 TGAGTTACAACCATAGGTCTTACA 57.079 37.500 0.00 0.00 33.12 2.41
3933 6575 9.010029 AGTTACAACCATAGGTCTTACATTTTG 57.990 33.333 0.00 0.00 33.12 2.44
3935 6577 7.687941 ACAACCATAGGTCTTACATTTTGAG 57.312 36.000 0.00 0.00 33.12 3.02
3940 6582 7.942341 ACCATAGGTCTTACATTTTGAGACAAA 59.058 33.333 5.26 0.00 41.15 2.83
3941 6583 8.792633 CCATAGGTCTTACATTTTGAGACAAAA 58.207 33.333 11.14 11.14 41.15 2.44
3953 6595 8.846211 CATTTTGAGACAAAAGGGAGTAGTTTA 58.154 33.333 13.54 0.00 0.00 2.01
3955 6597 8.990163 TTTGAGACAAAAGGGAGTAGTTTATT 57.010 30.769 0.00 0.00 0.00 1.40
3956 6598 7.979444 TGAGACAAAAGGGAGTAGTTTATTG 57.021 36.000 0.00 0.00 0.00 1.90
3957 6599 6.430000 TGAGACAAAAGGGAGTAGTTTATTGC 59.570 38.462 0.00 0.00 0.00 3.56
3958 6600 6.543735 AGACAAAAGGGAGTAGTTTATTGCT 58.456 36.000 0.00 0.00 0.00 3.91
3959 6601 6.655425 AGACAAAAGGGAGTAGTTTATTGCTC 59.345 38.462 0.00 0.00 0.00 4.26
3960 6602 5.710567 ACAAAAGGGAGTAGTTTATTGCTCC 59.289 40.000 0.00 0.00 44.93 4.70
3964 6606 4.074627 GGAGTAGTTTATTGCTCCCTCC 57.925 50.000 0.00 0.00 41.08 4.30
3965 6607 3.492829 GGAGTAGTTTATTGCTCCCTCCG 60.493 52.174 0.00 0.00 41.08 4.63
3966 6608 3.105283 AGTAGTTTATTGCTCCCTCCGT 58.895 45.455 0.00 0.00 0.00 4.69
3967 6609 3.518303 AGTAGTTTATTGCTCCCTCCGTT 59.482 43.478 0.00 0.00 0.00 4.44
3968 6610 2.987232 AGTTTATTGCTCCCTCCGTTC 58.013 47.619 0.00 0.00 0.00 3.95
3969 6611 2.304761 AGTTTATTGCTCCCTCCGTTCA 59.695 45.455 0.00 0.00 0.00 3.18
3970 6612 2.396590 TTATTGCTCCCTCCGTTCAC 57.603 50.000 0.00 0.00 0.00 3.18
3971 6613 1.568504 TATTGCTCCCTCCGTTCACT 58.431 50.000 0.00 0.00 0.00 3.41
3972 6614 0.693049 ATTGCTCCCTCCGTTCACTT 59.307 50.000 0.00 0.00 0.00 3.16
3973 6615 0.472471 TTGCTCCCTCCGTTCACTTT 59.528 50.000 0.00 0.00 0.00 2.66
3974 6616 0.472471 TGCTCCCTCCGTTCACTTTT 59.528 50.000 0.00 0.00 0.00 2.27
3975 6617 1.695242 TGCTCCCTCCGTTCACTTTTA 59.305 47.619 0.00 0.00 0.00 1.52
3976 6618 2.304761 TGCTCCCTCCGTTCACTTTTAT 59.695 45.455 0.00 0.00 0.00 1.40
3977 6619 3.516300 TGCTCCCTCCGTTCACTTTTATA 59.484 43.478 0.00 0.00 0.00 0.98
3978 6620 4.020039 TGCTCCCTCCGTTCACTTTTATAA 60.020 41.667 0.00 0.00 0.00 0.98
3979 6621 4.571176 GCTCCCTCCGTTCACTTTTATAAG 59.429 45.833 0.00 0.00 37.40 1.73
3980 6622 5.731591 CTCCCTCCGTTCACTTTTATAAGT 58.268 41.667 0.00 0.00 45.40 2.24
3981 6623 5.727434 TCCCTCCGTTCACTTTTATAAGTC 58.273 41.667 0.00 0.00 42.67 3.01
3982 6624 5.246656 TCCCTCCGTTCACTTTTATAAGTCA 59.753 40.000 0.00 0.00 42.67 3.41
3983 6625 6.070424 TCCCTCCGTTCACTTTTATAAGTCAT 60.070 38.462 0.00 0.00 42.67 3.06
3984 6626 6.598064 CCCTCCGTTCACTTTTATAAGTCATT 59.402 38.462 0.00 0.00 42.67 2.57
3985 6627 7.120726 CCCTCCGTTCACTTTTATAAGTCATTT 59.879 37.037 0.00 0.00 42.67 2.32
3986 6628 8.175716 CCTCCGTTCACTTTTATAAGTCATTTC 58.824 37.037 0.00 0.00 42.67 2.17
3987 6629 8.610248 TCCGTTCACTTTTATAAGTCATTTCA 57.390 30.769 0.00 0.00 42.67 2.69
3988 6630 8.717821 TCCGTTCACTTTTATAAGTCATTTCAG 58.282 33.333 0.00 0.00 42.67 3.02
3989 6631 8.717821 CCGTTCACTTTTATAAGTCATTTCAGA 58.282 33.333 0.00 0.00 42.67 3.27
3990 6632 9.530129 CGTTCACTTTTATAAGTCATTTCAGAC 57.470 33.333 0.00 0.00 42.67 3.51
4027 6669 8.673626 AGTTATTTTGCATAATGTCTGAAACG 57.326 30.769 12.07 0.00 0.00 3.60
4028 6670 8.296713 AGTTATTTTGCATAATGTCTGAAACGT 58.703 29.630 12.07 0.00 0.00 3.99
4029 6671 8.911662 GTTATTTTGCATAATGTCTGAAACGTT 58.088 29.630 12.07 0.00 40.28 3.99
4030 6672 7.945033 ATTTTGCATAATGTCTGAAACGTTT 57.055 28.000 14.57 14.57 38.14 3.60
4032 6674 7.845617 TTTGCATAATGTCTGAAACGTTTAC 57.154 32.000 14.65 9.46 38.14 2.01
4033 6675 6.546972 TGCATAATGTCTGAAACGTTTACA 57.453 33.333 14.65 15.08 38.14 2.41
4034 6676 6.960468 TGCATAATGTCTGAAACGTTTACAA 58.040 32.000 14.65 1.59 38.14 2.41
4035 6677 7.418408 TGCATAATGTCTGAAACGTTTACAAA 58.582 30.769 14.65 8.15 38.14 2.83
4036 6678 7.589587 TGCATAATGTCTGAAACGTTTACAAAG 59.410 33.333 14.65 9.49 38.14 2.77
4037 6679 7.409343 GCATAATGTCTGAAACGTTTACAAAGC 60.409 37.037 14.65 12.84 38.14 3.51
4038 6680 4.281525 TGTCTGAAACGTTTACAAAGCC 57.718 40.909 14.65 0.00 0.00 4.35
4039 6681 3.942748 TGTCTGAAACGTTTACAAAGCCT 59.057 39.130 14.65 0.00 0.00 4.58
4040 6682 4.396790 TGTCTGAAACGTTTACAAAGCCTT 59.603 37.500 14.65 0.00 0.00 4.35
4041 6683 5.585445 TGTCTGAAACGTTTACAAAGCCTTA 59.415 36.000 14.65 0.00 0.00 2.69
4042 6684 6.261381 TGTCTGAAACGTTTACAAAGCCTTAT 59.739 34.615 14.65 0.00 0.00 1.73
4043 6685 7.441760 TGTCTGAAACGTTTACAAAGCCTTATA 59.558 33.333 14.65 0.00 0.00 0.98
4044 6686 8.284693 GTCTGAAACGTTTACAAAGCCTTATAA 58.715 33.333 14.65 0.00 0.00 0.98
4045 6687 8.838365 TCTGAAACGTTTACAAAGCCTTATAAA 58.162 29.630 14.65 0.00 0.00 1.40
4046 6688 9.453325 CTGAAACGTTTACAAAGCCTTATAAAA 57.547 29.630 14.65 0.00 0.00 1.52
4047 6689 9.798994 TGAAACGTTTACAAAGCCTTATAAAAA 57.201 25.926 14.65 0.00 0.00 1.94
4050 6692 9.968870 AACGTTTACAAAGCCTTATAAAAATGA 57.031 25.926 0.00 0.00 0.00 2.57
4051 6693 9.968870 ACGTTTACAAAGCCTTATAAAAATGAA 57.031 25.926 0.00 0.00 0.00 2.57
4057 6699 8.306761 ACAAAGCCTTATAAAAATGAACAGAGG 58.693 33.333 0.00 0.00 0.00 3.69
4058 6700 7.410120 AAGCCTTATAAAAATGAACAGAGGG 57.590 36.000 0.00 0.00 0.00 4.30
4059 6701 6.731467 AGCCTTATAAAAATGAACAGAGGGA 58.269 36.000 0.00 0.00 0.00 4.20
4060 6702 6.830838 AGCCTTATAAAAATGAACAGAGGGAG 59.169 38.462 0.00 0.00 0.00 4.30
4061 6703 6.603599 GCCTTATAAAAATGAACAGAGGGAGT 59.396 38.462 0.00 0.00 0.00 3.85
4062 6704 7.773690 GCCTTATAAAAATGAACAGAGGGAGTA 59.226 37.037 0.00 0.00 0.00 2.59
4063 6705 9.853177 CCTTATAAAAATGAACAGAGGGAGTAT 57.147 33.333 0.00 0.00 0.00 2.12
4100 6742 7.672122 TTCTCCTCTTAGGGTTTATAAGGTC 57.328 40.000 0.00 0.00 35.59 3.85
4106 6748 7.419172 CCTCTTAGGGTTTATAAGGTCTGGAAG 60.419 44.444 0.00 0.00 32.24 3.46
4144 6786 4.034510 CCAGCTCGTTCCTACAAAATGATC 59.965 45.833 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.693049 AATCAGTCGGCTTCAGGGTT 59.307 50.000 0.00 0.00 0.00 4.11
48 49 6.124088 ACAAACAAGAGTGAATTGTGACTC 57.876 37.500 0.00 0.00 39.91 3.36
52 53 5.247507 TGGACAAACAAGAGTGAATTGTG 57.752 39.130 0.00 0.00 39.91 3.33
53 54 5.829924 AGATGGACAAACAAGAGTGAATTGT 59.170 36.000 0.00 0.00 42.55 2.71
54 55 6.323203 AGATGGACAAACAAGAGTGAATTG 57.677 37.500 0.00 0.00 33.89 2.32
55 56 8.105829 AGATAGATGGACAAACAAGAGTGAATT 58.894 33.333 0.00 0.00 0.00 2.17
56 57 7.628234 AGATAGATGGACAAACAAGAGTGAAT 58.372 34.615 0.00 0.00 0.00 2.57
57 58 7.009179 AGATAGATGGACAAACAAGAGTGAA 57.991 36.000 0.00 0.00 0.00 3.18
58 59 6.351371 GGAGATAGATGGACAAACAAGAGTGA 60.351 42.308 0.00 0.00 0.00 3.41
61 62 5.982356 TGGAGATAGATGGACAAACAAGAG 58.018 41.667 0.00 0.00 0.00 2.85
62 63 6.373005 TTGGAGATAGATGGACAAACAAGA 57.627 37.500 0.00 0.00 0.00 3.02
63 64 7.175641 ACTTTTGGAGATAGATGGACAAACAAG 59.824 37.037 0.00 0.00 0.00 3.16
64 65 7.004086 ACTTTTGGAGATAGATGGACAAACAA 58.996 34.615 0.00 0.00 0.00 2.83
65 66 6.542821 ACTTTTGGAGATAGATGGACAAACA 58.457 36.000 0.00 0.00 0.00 2.83
66 67 7.606456 TGTACTTTTGGAGATAGATGGACAAAC 59.394 37.037 0.00 0.00 0.00 2.93
67 68 7.685481 TGTACTTTTGGAGATAGATGGACAAA 58.315 34.615 0.00 0.00 0.00 2.83
68 69 7.252612 TGTACTTTTGGAGATAGATGGACAA 57.747 36.000 0.00 0.00 0.00 3.18
69 70 6.867519 TGTACTTTTGGAGATAGATGGACA 57.132 37.500 0.00 0.00 0.00 4.02
70 71 6.708054 CCATGTACTTTTGGAGATAGATGGAC 59.292 42.308 0.00 0.00 34.81 4.02
71 72 6.386927 ACCATGTACTTTTGGAGATAGATGGA 59.613 38.462 11.89 0.00 36.79 3.41
72 73 6.484643 CACCATGTACTTTTGGAGATAGATGG 59.515 42.308 14.45 7.51 36.79 3.51
73 74 6.017605 GCACCATGTACTTTTGGAGATAGATG 60.018 42.308 14.45 4.53 36.79 2.90
74 75 6.058183 GCACCATGTACTTTTGGAGATAGAT 58.942 40.000 14.45 0.00 36.79 1.98
75 76 5.045942 TGCACCATGTACTTTTGGAGATAGA 60.046 40.000 14.45 0.00 36.79 1.98
76 77 5.065218 GTGCACCATGTACTTTTGGAGATAG 59.935 44.000 5.22 0.00 36.79 2.08
77 78 4.941263 GTGCACCATGTACTTTTGGAGATA 59.059 41.667 5.22 1.21 36.79 1.98
78 79 3.758554 GTGCACCATGTACTTTTGGAGAT 59.241 43.478 5.22 0.00 36.79 2.75
79 80 3.146066 GTGCACCATGTACTTTTGGAGA 58.854 45.455 5.22 0.00 36.79 3.71
80 81 2.884012 TGTGCACCATGTACTTTTGGAG 59.116 45.455 15.69 9.17 36.79 3.86
81 82 2.937519 TGTGCACCATGTACTTTTGGA 58.062 42.857 15.69 0.00 36.79 3.53
82 83 3.724508 TTGTGCACCATGTACTTTTGG 57.275 42.857 15.69 8.08 39.02 3.28
83 84 7.089538 TGATAATTGTGCACCATGTACTTTTG 58.910 34.615 15.69 0.00 33.97 2.44
84 85 7.225784 TGATAATTGTGCACCATGTACTTTT 57.774 32.000 15.69 0.00 33.97 2.27
85 86 6.832520 TGATAATTGTGCACCATGTACTTT 57.167 33.333 15.69 0.00 33.97 2.66
86 87 6.832520 TTGATAATTGTGCACCATGTACTT 57.167 33.333 15.69 0.00 33.97 2.24
87 88 6.602803 TCATTGATAATTGTGCACCATGTACT 59.397 34.615 15.69 0.00 33.97 2.73
88 89 6.692681 GTCATTGATAATTGTGCACCATGTAC 59.307 38.462 15.69 4.68 33.42 2.90
104 105 7.233553 CCTCCACCTTCTATAGTGTCATTGATA 59.766 40.741 0.00 0.00 31.88 2.15
108 109 5.281314 ACCTCCACCTTCTATAGTGTCATT 58.719 41.667 0.00 0.00 31.88 2.57
122 123 3.181434 TGATAAGCAAACAACCTCCACCT 60.181 43.478 0.00 0.00 0.00 4.00
139 140 3.684788 GGCTTCTTTTCTCGTGCTGATAA 59.315 43.478 0.00 0.00 0.00 1.75
140 141 3.262420 GGCTTCTTTTCTCGTGCTGATA 58.738 45.455 0.00 0.00 0.00 2.15
141 142 2.079925 GGCTTCTTTTCTCGTGCTGAT 58.920 47.619 0.00 0.00 0.00 2.90
142 143 1.512926 GGCTTCTTTTCTCGTGCTGA 58.487 50.000 0.00 0.00 0.00 4.26
144 145 0.951040 CCGGCTTCTTTTCTCGTGCT 60.951 55.000 0.00 0.00 0.00 4.40
146 147 0.790814 GTCCGGCTTCTTTTCTCGTG 59.209 55.000 0.00 0.00 0.00 4.35
148 149 0.790814 GTGTCCGGCTTCTTTTCTCG 59.209 55.000 0.00 0.00 0.00 4.04
149 150 2.171341 AGTGTCCGGCTTCTTTTCTC 57.829 50.000 0.00 0.00 0.00 2.87
151 152 2.074576 GGTAGTGTCCGGCTTCTTTTC 58.925 52.381 0.00 0.00 0.00 2.29
155 156 1.053424 TTTGGTAGTGTCCGGCTTCT 58.947 50.000 0.00 0.00 0.00 2.85
156 157 1.534163 GTTTTGGTAGTGTCCGGCTTC 59.466 52.381 0.00 0.00 0.00 3.86
157 158 1.142262 AGTTTTGGTAGTGTCCGGCTT 59.858 47.619 0.00 0.00 0.00 4.35
158 159 0.763035 AGTTTTGGTAGTGTCCGGCT 59.237 50.000 0.00 0.00 0.00 5.52
160 161 1.071071 TGGAGTTTTGGTAGTGTCCGG 59.929 52.381 0.00 0.00 0.00 5.14
161 162 2.536761 TGGAGTTTTGGTAGTGTCCG 57.463 50.000 0.00 0.00 0.00 4.79
162 163 4.065789 CTCTTGGAGTTTTGGTAGTGTCC 58.934 47.826 0.00 0.00 0.00 4.02
163 164 4.704965 ACTCTTGGAGTTTTGGTAGTGTC 58.295 43.478 0.00 0.00 40.28 3.67
164 165 4.772886 ACTCTTGGAGTTTTGGTAGTGT 57.227 40.909 0.00 0.00 40.28 3.55
165 166 4.691216 GCTACTCTTGGAGTTTTGGTAGTG 59.309 45.833 5.50 0.00 40.28 2.74
166 167 4.593634 AGCTACTCTTGGAGTTTTGGTAGT 59.406 41.667 5.50 0.00 40.28 2.73
167 168 5.153950 AGCTACTCTTGGAGTTTTGGTAG 57.846 43.478 5.50 0.00 40.28 3.18
168 169 6.869206 ATAGCTACTCTTGGAGTTTTGGTA 57.131 37.500 5.50 7.23 40.28 3.25
169 170 5.763876 ATAGCTACTCTTGGAGTTTTGGT 57.236 39.130 5.50 5.57 40.28 3.67
170 171 7.442666 GGAATATAGCTACTCTTGGAGTTTTGG 59.557 40.741 5.50 0.00 40.28 3.28
171 172 7.442666 GGGAATATAGCTACTCTTGGAGTTTTG 59.557 40.741 5.50 0.00 40.28 2.44
172 173 7.348537 AGGGAATATAGCTACTCTTGGAGTTTT 59.651 37.037 5.50 0.00 40.28 2.43
173 174 6.847036 AGGGAATATAGCTACTCTTGGAGTTT 59.153 38.462 5.50 0.00 40.28 2.66
174 175 6.386284 AGGGAATATAGCTACTCTTGGAGTT 58.614 40.000 5.50 0.00 40.28 3.01
175 176 5.971493 AGGGAATATAGCTACTCTTGGAGT 58.029 41.667 0.00 5.52 45.54 3.85
176 177 6.948886 TGTAGGGAATATAGCTACTCTTGGAG 59.051 42.308 0.00 0.00 35.52 3.86
177 178 6.860034 TGTAGGGAATATAGCTACTCTTGGA 58.140 40.000 0.00 0.00 0.00 3.53
182 183 9.780186 AATGTTTTGTAGGGAATATAGCTACTC 57.220 33.333 0.00 0.00 0.00 2.59
210 211 7.388776 TCTGTTATCTTTGACACTTTCAGGATG 59.611 37.037 0.00 0.00 34.94 3.51
211 212 7.453393 TCTGTTATCTTTGACACTTTCAGGAT 58.547 34.615 0.00 0.00 34.94 3.24
212 213 6.826668 TCTGTTATCTTTGACACTTTCAGGA 58.173 36.000 0.00 0.00 34.94 3.86
213 214 7.012327 TGTTCTGTTATCTTTGACACTTTCAGG 59.988 37.037 0.00 0.00 34.94 3.86
214 215 7.919690 TGTTCTGTTATCTTTGACACTTTCAG 58.080 34.615 0.00 0.00 34.94 3.02
215 216 7.857734 TGTTCTGTTATCTTTGACACTTTCA 57.142 32.000 0.00 0.00 0.00 2.69
216 217 9.173939 CAATGTTCTGTTATCTTTGACACTTTC 57.826 33.333 0.00 0.00 0.00 2.62
217 218 8.686334 ACAATGTTCTGTTATCTTTGACACTTT 58.314 29.630 0.00 0.00 0.00 2.66
218 219 8.225603 ACAATGTTCTGTTATCTTTGACACTT 57.774 30.769 0.00 0.00 0.00 3.16
219 220 7.807977 ACAATGTTCTGTTATCTTTGACACT 57.192 32.000 0.00 0.00 0.00 3.55
220 221 8.015658 GGTACAATGTTCTGTTATCTTTGACAC 58.984 37.037 0.00 0.00 0.00 3.67
244 245 9.866655 TTGGCTATTTAATTCTCTTCATATGGT 57.133 29.630 2.13 0.00 0.00 3.55
249 250 9.466497 TCTGTTTGGCTATTTAATTCTCTTCAT 57.534 29.630 0.00 0.00 0.00 2.57
250 251 8.862325 TCTGTTTGGCTATTTAATTCTCTTCA 57.138 30.769 0.00 0.00 0.00 3.02
254 255 9.358872 CCTTTTCTGTTTGGCTATTTAATTCTC 57.641 33.333 0.00 0.00 0.00 2.87
269 270 6.524101 TGTAGTTGAAAGCCTTTTCTGTTT 57.476 33.333 0.00 0.00 42.56 2.83
270 271 6.715347 ATGTAGTTGAAAGCCTTTTCTGTT 57.285 33.333 0.00 0.00 42.56 3.16
271 272 7.817418 TTATGTAGTTGAAAGCCTTTTCTGT 57.183 32.000 0.00 0.00 42.56 3.41
272 273 9.528018 TTTTTATGTAGTTGAAAGCCTTTTCTG 57.472 29.630 0.00 0.00 42.56 3.02
298 299 7.957484 CGATCTTTTGTTATCATCGTTGTTCTT 59.043 33.333 0.00 0.00 0.00 2.52
299 300 7.117812 ACGATCTTTTGTTATCATCGTTGTTCT 59.882 33.333 0.00 0.00 39.79 3.01
302 303 6.721571 ACGATCTTTTGTTATCATCGTTGT 57.278 33.333 0.00 0.00 39.79 3.32
303 304 7.117454 GGTACGATCTTTTGTTATCATCGTTG 58.883 38.462 10.22 0.00 42.24 4.10
304 305 6.814644 TGGTACGATCTTTTGTTATCATCGTT 59.185 34.615 10.22 0.00 42.24 3.85
305 306 6.334989 TGGTACGATCTTTTGTTATCATCGT 58.665 36.000 9.88 9.88 44.05 3.73
306 307 6.822073 TGGTACGATCTTTTGTTATCATCG 57.178 37.500 0.00 0.00 36.31 3.84
309 310 9.476202 CTCATATGGTACGATCTTTTGTTATCA 57.524 33.333 2.13 0.00 0.00 2.15
310 311 9.692749 TCTCATATGGTACGATCTTTTGTTATC 57.307 33.333 2.13 0.00 0.00 1.75
312 313 9.529325 CTTCTCATATGGTACGATCTTTTGTTA 57.471 33.333 2.13 0.00 0.00 2.41
313 314 8.258007 TCTTCTCATATGGTACGATCTTTTGTT 58.742 33.333 2.13 0.00 0.00 2.83
314 315 7.782049 TCTTCTCATATGGTACGATCTTTTGT 58.218 34.615 2.13 0.00 0.00 2.83
315 316 8.824159 ATCTTCTCATATGGTACGATCTTTTG 57.176 34.615 2.13 0.00 0.00 2.44
316 317 8.865090 AGATCTTCTCATATGGTACGATCTTTT 58.135 33.333 15.38 2.66 34.38 2.27
318 319 8.415950 AAGATCTTCTCATATGGTACGATCTT 57.584 34.615 21.25 21.25 40.30 2.40
319 320 8.952278 GTAAGATCTTCTCATATGGTACGATCT 58.048 37.037 12.24 15.38 38.29 2.75
320 321 7.906010 CGTAAGATCTTCTCATATGGTACGATC 59.094 40.741 12.24 9.13 43.02 3.69
324 325 9.828852 CTAACGTAAGATCTTCTCATATGGTAC 57.171 37.037 12.24 0.00 43.62 3.34
326 327 8.466617 ACTAACGTAAGATCTTCTCATATGGT 57.533 34.615 12.24 0.47 43.62 3.55
327 328 9.751542 AAACTAACGTAAGATCTTCTCATATGG 57.248 33.333 12.24 0.03 43.62 2.74
331 332 7.914346 CCGTAAACTAACGTAAGATCTTCTCAT 59.086 37.037 12.24 0.20 41.27 2.90
332 333 7.119699 TCCGTAAACTAACGTAAGATCTTCTCA 59.880 37.037 12.24 0.00 41.27 3.27
333 334 7.467623 TCCGTAAACTAACGTAAGATCTTCTC 58.532 38.462 12.24 5.90 41.27 2.87
335 336 7.467623 TCTCCGTAAACTAACGTAAGATCTTC 58.532 38.462 12.24 3.15 41.27 2.87
337 338 6.038050 CCTCTCCGTAAACTAACGTAAGATCT 59.962 42.308 0.00 0.00 41.27 2.75
338 339 6.197981 CCTCTCCGTAAACTAACGTAAGATC 58.802 44.000 0.00 0.00 41.27 2.75
339 340 5.067023 CCCTCTCCGTAAACTAACGTAAGAT 59.933 44.000 0.00 0.00 41.27 2.40
340 341 4.396166 CCCTCTCCGTAAACTAACGTAAGA 59.604 45.833 0.00 0.00 41.27 2.10
341 342 4.156739 ACCCTCTCCGTAAACTAACGTAAG 59.843 45.833 0.00 0.00 41.27 2.34
342 343 4.079253 ACCCTCTCCGTAAACTAACGTAA 58.921 43.478 0.00 0.00 41.27 3.18
343 344 3.686016 ACCCTCTCCGTAAACTAACGTA 58.314 45.455 0.00 0.00 41.27 3.57
344 345 2.519013 ACCCTCTCCGTAAACTAACGT 58.481 47.619 0.00 0.00 41.27 3.99
345 346 4.907879 ATACCCTCTCCGTAAACTAACG 57.092 45.455 0.00 0.00 42.49 3.18
346 347 6.871844 AGAAATACCCTCTCCGTAAACTAAC 58.128 40.000 0.00 0.00 0.00 2.34
349 350 6.370186 AAAGAAATACCCTCTCCGTAAACT 57.630 37.500 0.00 0.00 0.00 2.66
350 351 8.552083 TTAAAAGAAATACCCTCTCCGTAAAC 57.448 34.615 0.00 0.00 0.00 2.01
351 352 9.743581 ATTTAAAAGAAATACCCTCTCCGTAAA 57.256 29.630 0.00 0.00 0.00 2.01
353 354 9.169592 CAATTTAAAAGAAATACCCTCTCCGTA 57.830 33.333 0.00 0.00 0.00 4.02
354 355 7.886446 TCAATTTAAAAGAAATACCCTCTCCGT 59.114 33.333 0.00 0.00 0.00 4.69
355 356 8.182227 GTCAATTTAAAAGAAATACCCTCTCCG 58.818 37.037 0.00 0.00 0.00 4.63
356 357 9.020731 TGTCAATTTAAAAGAAATACCCTCTCC 57.979 33.333 0.00 0.00 0.00 3.71
359 360 9.586435 CCATGTCAATTTAAAAGAAATACCCTC 57.414 33.333 0.00 0.00 0.00 4.30
360 361 9.100197 ACCATGTCAATTTAAAAGAAATACCCT 57.900 29.630 0.00 0.00 0.00 4.34
361 362 9.719355 AACCATGTCAATTTAAAAGAAATACCC 57.281 29.630 0.00 0.00 0.00 3.69
364 365 9.995003 AGCAACCATGTCAATTTAAAAGAAATA 57.005 25.926 0.00 0.00 0.00 1.40
365 366 8.776470 CAGCAACCATGTCAATTTAAAAGAAAT 58.224 29.630 0.00 0.00 0.00 2.17
366 367 7.226325 CCAGCAACCATGTCAATTTAAAAGAAA 59.774 33.333 0.00 0.00 0.00 2.52
367 368 6.705381 CCAGCAACCATGTCAATTTAAAAGAA 59.295 34.615 0.00 0.00 0.00 2.52
368 369 6.183360 ACCAGCAACCATGTCAATTTAAAAGA 60.183 34.615 0.00 0.00 0.00 2.52
369 370 5.990996 ACCAGCAACCATGTCAATTTAAAAG 59.009 36.000 0.00 0.00 0.00 2.27
370 371 5.923204 ACCAGCAACCATGTCAATTTAAAA 58.077 33.333 0.00 0.00 0.00 1.52
371 372 5.537188 GACCAGCAACCATGTCAATTTAAA 58.463 37.500 0.00 0.00 0.00 1.52
373 374 3.190327 CGACCAGCAACCATGTCAATTTA 59.810 43.478 0.00 0.00 0.00 1.40
374 375 2.030007 CGACCAGCAACCATGTCAATTT 60.030 45.455 0.00 0.00 0.00 1.82
389 403 2.315925 AGCACACCATTATCGACCAG 57.684 50.000 0.00 0.00 0.00 4.00
395 409 6.027749 CCTCGTTTTAAAGCACACCATTATC 58.972 40.000 2.86 0.00 0.00 1.75
404 418 1.399343 GGTCGCCTCGTTTTAAAGCAC 60.399 52.381 2.86 0.00 0.00 4.40
405 419 0.869730 GGTCGCCTCGTTTTAAAGCA 59.130 50.000 2.86 0.00 0.00 3.91
406 420 0.167470 GGGTCGCCTCGTTTTAAAGC 59.833 55.000 0.00 0.00 0.00 3.51
409 423 1.228533 GTTGGGTCGCCTCGTTTTAA 58.771 50.000 0.00 0.00 0.00 1.52
415 429 1.644786 GGAAATGTTGGGTCGCCTCG 61.645 60.000 0.00 0.00 0.00 4.63
417 431 1.304134 GGGAAATGTTGGGTCGCCT 60.304 57.895 0.00 0.00 0.00 5.52
421 435 3.202151 TGAGGATAGGGAAATGTTGGGTC 59.798 47.826 0.00 0.00 0.00 4.46
452 471 0.101579 GGAAGAGTCACGAGGCTAGC 59.898 60.000 6.04 6.04 0.00 3.42
455 474 1.048601 TTTGGAAGAGTCACGAGGCT 58.951 50.000 0.00 0.00 0.00 4.58
460 479 2.947852 AGACGATTTGGAAGAGTCACG 58.052 47.619 0.00 0.00 34.56 4.35
468 487 6.884295 ACTTGAATTGGATAGACGATTTGGAA 59.116 34.615 0.00 0.00 0.00 3.53
477 538 3.312697 GGGCGAACTTGAATTGGATAGAC 59.687 47.826 0.00 0.00 0.00 2.59
505 566 0.534873 GTGCTCTCCAACTCCCTCTC 59.465 60.000 0.00 0.00 0.00 3.20
578 647 4.036380 GCCACCGTTTTCCTTCCTTATATG 59.964 45.833 0.00 0.00 0.00 1.78
582 2467 1.878948 CGCCACCGTTTTCCTTCCTTA 60.879 52.381 0.00 0.00 0.00 2.69
614 2499 5.105228 ACGTTTTTGGATCGGGATTAGTAGA 60.105 40.000 0.00 0.00 0.00 2.59
615 2500 5.006358 CACGTTTTTGGATCGGGATTAGTAG 59.994 44.000 0.00 0.00 0.00 2.57
616 2501 4.871557 CACGTTTTTGGATCGGGATTAGTA 59.128 41.667 0.00 0.00 0.00 1.82
696 2636 2.100631 CGACTTCCCGTGGATGCAC 61.101 63.158 7.39 7.39 31.08 4.57
785 2732 4.271533 CGGGTTATTGATTTCGAAATCGGA 59.728 41.667 33.97 27.63 46.01 4.55
859 2806 0.818296 GCTACGTGGTGGACTGATCT 59.182 55.000 0.00 0.00 0.00 2.75
860 2807 0.179108 GGCTACGTGGTGGACTGATC 60.179 60.000 0.00 0.00 0.00 2.92
861 2808 1.614241 GGGCTACGTGGTGGACTGAT 61.614 60.000 0.00 0.00 0.00 2.90
862 2809 2.280552 GGGCTACGTGGTGGACTGA 61.281 63.158 0.00 0.00 0.00 3.41
863 2810 2.264794 GGGCTACGTGGTGGACTG 59.735 66.667 0.00 0.00 0.00 3.51
864 2811 2.203728 TGGGCTACGTGGTGGACT 60.204 61.111 0.00 0.00 0.00 3.85
878 2826 2.359967 GGGAGGAAGGAGACGTGGG 61.360 68.421 0.00 0.00 0.00 4.61
894 2842 3.396260 TCCAACTCTGTTTACTTCGGG 57.604 47.619 0.00 0.00 0.00 5.14
910 2860 3.379452 GAGAGAGAGAGGGGATTTCCAA 58.621 50.000 0.00 0.00 37.91 3.53
911 2861 2.359781 GGAGAGAGAGAGGGGATTTCCA 60.360 54.545 0.00 0.00 37.91 3.53
922 2872 1.153329 GCGACGAGGGAGAGAGAGA 60.153 63.158 0.00 0.00 0.00 3.10
923 2873 1.153249 AGCGACGAGGGAGAGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
924 2874 1.450491 CAGCGACGAGGGAGAGAGA 60.450 63.158 0.00 0.00 0.00 3.10
1134 3121 0.528684 GGAAAGACAGATCTCCGCGG 60.529 60.000 22.12 22.12 32.34 6.46
1137 3124 1.202313 GGACGGAAAGACAGATCTCCG 60.202 57.143 15.13 15.13 44.27 4.63
1148 3135 1.078848 CAGAGGCAGGGACGGAAAG 60.079 63.158 0.00 0.00 0.00 2.62
1149 3136 3.068881 CAGAGGCAGGGACGGAAA 58.931 61.111 0.00 0.00 0.00 3.13
1150 3137 3.706373 GCAGAGGCAGGGACGGAA 61.706 66.667 0.00 0.00 40.72 4.30
1151 3138 4.704103 AGCAGAGGCAGGGACGGA 62.704 66.667 0.00 0.00 44.61 4.69
1152 3139 4.463879 CAGCAGAGGCAGGGACGG 62.464 72.222 0.00 0.00 44.61 4.79
1153 3140 2.249413 ATTCAGCAGAGGCAGGGACG 62.249 60.000 0.00 0.00 44.61 4.79
1154 3141 0.463474 GATTCAGCAGAGGCAGGGAC 60.463 60.000 0.00 0.00 44.61 4.46
1155 3142 0.619832 AGATTCAGCAGAGGCAGGGA 60.620 55.000 0.00 0.00 44.61 4.20
1156 3143 0.464013 CAGATTCAGCAGAGGCAGGG 60.464 60.000 0.00 0.00 44.61 4.45
1358 3354 0.528684 GAATTGGTCGCGGAGAGGAG 60.529 60.000 6.13 0.00 0.00 3.69
1359 3355 1.515954 GAATTGGTCGCGGAGAGGA 59.484 57.895 6.13 0.00 0.00 3.71
1360 3356 1.521681 GGAATTGGTCGCGGAGAGG 60.522 63.158 6.13 0.00 0.00 3.69
1361 3357 0.528684 GAGGAATTGGTCGCGGAGAG 60.529 60.000 6.13 0.00 0.00 3.20
1408 3404 3.443045 GCCCAGGCCATGTCAACG 61.443 66.667 5.01 0.00 34.56 4.10
1460 3457 2.668457 CGCAGCTGGTACTAACTTCTTG 59.332 50.000 17.12 0.00 0.00 3.02
1461 3458 2.353803 CCGCAGCTGGTACTAACTTCTT 60.354 50.000 17.12 0.00 0.00 2.52
1463 3460 1.203994 TCCGCAGCTGGTACTAACTTC 59.796 52.381 17.12 0.00 0.00 3.01
1481 3478 2.190578 CGCCACCTCTTCCCATCC 59.809 66.667 0.00 0.00 0.00 3.51
1487 3484 0.462759 ATTGCTAGCGCCACCTCTTC 60.463 55.000 10.77 0.00 34.43 2.87
1590 3598 7.132863 TCATATAGAAACTCGATGAAGTCACG 58.867 38.462 0.00 0.00 0.00 4.35
1636 4081 9.343539 AGAAAGAAGCTAAACTAGACATTTGTT 57.656 29.630 0.00 0.00 0.00 2.83
1658 4104 5.716228 AGGTTTATGGCATGACAATGAGAAA 59.284 36.000 4.70 0.00 35.67 2.52
1684 4136 5.620206 ACCTTGACAAGTGAATATGACACA 58.380 37.500 14.03 0.00 40.25 3.72
1734 4189 3.778075 TGGCCTGCCTGTAGTATTAAAGA 59.222 43.478 9.97 0.00 36.94 2.52
1736 4191 4.226394 TCTTGGCCTGCCTGTAGTATTAAA 59.774 41.667 9.97 0.00 36.94 1.52
1741 4196 1.651737 TTCTTGGCCTGCCTGTAGTA 58.348 50.000 9.97 0.00 36.94 1.82
1743 4198 1.065199 TGATTCTTGGCCTGCCTGTAG 60.065 52.381 9.97 4.67 36.94 2.74
1805 4260 5.088739 GTGATGTCATAAACCAAAAGAGCG 58.911 41.667 0.00 0.00 0.00 5.03
1843 4298 3.268023 ACCAGGCAGCTTTCACTATAC 57.732 47.619 0.00 0.00 0.00 1.47
1879 4334 4.092091 CGTGCTCAGCTAGGTTTAGAAAAG 59.908 45.833 0.00 0.00 0.00 2.27
1886 4345 0.320771 CACCGTGCTCAGCTAGGTTT 60.321 55.000 13.01 0.00 37.05 3.27
1924 4383 5.397553 AAAGGTTTCCCTCCTAAAGTCAA 57.602 39.130 0.00 0.00 41.56 3.18
1925 4384 6.518516 TTAAAGGTTTCCCTCCTAAAGTCA 57.481 37.500 0.00 0.00 41.56 3.41
1994 4453 8.800370 TTCCAACTAGCATTATTGTCATGTTA 57.200 30.769 0.00 0.00 0.00 2.41
2191 4656 6.182039 TCCAAATCGAATGAGACAACAATC 57.818 37.500 3.34 0.00 0.00 2.67
2193 4658 6.573664 ATTCCAAATCGAATGAGACAACAA 57.426 33.333 3.34 0.00 31.19 2.83
2213 4678 1.888512 TCTTGACAAAGCCCTGCATTC 59.111 47.619 0.00 0.00 33.06 2.67
2250 4715 6.371548 CGAAGACACCATCCTGAATTTTCTTA 59.628 38.462 0.00 0.00 0.00 2.10
2312 4777 7.566760 TTCTCACTTTTCATTAAGCAGAACA 57.433 32.000 0.00 0.00 29.24 3.18
2313 4778 8.078596 ACATTCTCACTTTTCATTAAGCAGAAC 58.921 33.333 0.00 0.00 33.55 3.01
2629 5244 4.148838 TGTAACTTGTAAGGCAGGCATTT 58.851 39.130 0.00 0.00 0.00 2.32
2683 5298 1.016627 GAAGCAAGGCATATGCACGA 58.983 50.000 28.07 0.00 46.22 4.35
2727 5342 7.553044 GTCCATATAAAGGCACTCAGTAAAGTT 59.447 37.037 0.00 0.00 38.49 2.66
2739 5354 5.849475 TCTTATCAGGGTCCATATAAAGGCA 59.151 40.000 0.00 0.00 0.00 4.75
2765 5380 8.771920 TGTAACATCGTCATCATCTTTTAGTT 57.228 30.769 0.00 0.00 0.00 2.24
2838 5453 5.163540 GCAATGGATCTCTCTTTTTCAGCAT 60.164 40.000 0.00 0.00 0.00 3.79
2950 5565 6.986231 AGCTCAACAGGAAAAATGTTAAAAGG 59.014 34.615 0.00 0.00 38.80 3.11
3007 5622 2.296190 CAGGGCCAGGAACAAAGTAAAC 59.704 50.000 6.18 0.00 0.00 2.01
3008 5623 2.175931 TCAGGGCCAGGAACAAAGTAAA 59.824 45.455 6.18 0.00 0.00 2.01
3009 5624 1.777878 TCAGGGCCAGGAACAAAGTAA 59.222 47.619 6.18 0.00 0.00 2.24
3052 5667 6.455360 TGATTCCATAGGACTGCAAAAATC 57.545 37.500 0.00 0.00 0.00 2.17
3157 5772 6.321848 TGTACATCATTGATCATGGATTGC 57.678 37.500 0.00 0.00 33.07 3.56
3159 5774 9.976511 GATTTTGTACATCATTGATCATGGATT 57.023 29.630 0.00 0.00 33.07 3.01
3171 5786 3.380954 TGCCATGCGATTTTGTACATCAT 59.619 39.130 0.00 0.00 0.00 2.45
3289 5904 7.224297 TGAACTGAACCTATTTTGACTAGCTT 58.776 34.615 0.00 0.00 0.00 3.74
3381 6006 8.235359 TCACACATGCAAATGGATATAATTCA 57.765 30.769 0.00 0.00 0.00 2.57
3469 6094 9.830975 AAAATGGTGTTCAATAACTTTAAAGCT 57.169 25.926 15.24 5.71 36.51 3.74
3602 6227 9.487790 TTCATCCAATTAAACTCAACCATTTTC 57.512 29.630 0.00 0.00 0.00 2.29
3608 6233 6.272822 AGCTTCATCCAATTAAACTCAACC 57.727 37.500 0.00 0.00 0.00 3.77
3761 6390 9.665719 AACAGGAAAACAAGTCAATTACAAATT 57.334 25.926 0.00 0.00 0.00 1.82
3818 6454 9.780413 GAAACTTTTTGCTTATGATCTCTAAGG 57.220 33.333 13.87 3.49 0.00 2.69
3928 6570 7.898014 AAACTACTCCCTTTTGTCTCAAAAT 57.102 32.000 7.87 0.00 0.00 1.82
3933 6575 6.655425 AGCAATAAACTACTCCCTTTTGTCTC 59.345 38.462 0.00 0.00 0.00 3.36
3935 6577 6.127980 GGAGCAATAAACTACTCCCTTTTGTC 60.128 42.308 0.00 0.00 42.44 3.18
3953 6595 0.693049 AAGTGAACGGAGGGAGCAAT 59.307 50.000 0.00 0.00 0.00 3.56
3955 6597 0.472471 AAAAGTGAACGGAGGGAGCA 59.528 50.000 0.00 0.00 0.00 4.26
3956 6598 2.467566 TAAAAGTGAACGGAGGGAGC 57.532 50.000 0.00 0.00 0.00 4.70
3957 6599 5.731591 ACTTATAAAAGTGAACGGAGGGAG 58.268 41.667 0.00 0.00 44.40 4.30
3958 6600 5.246656 TGACTTATAAAAGTGAACGGAGGGA 59.753 40.000 0.00 0.00 46.09 4.20
3959 6601 5.484715 TGACTTATAAAAGTGAACGGAGGG 58.515 41.667 0.00 0.00 46.09 4.30
3960 6602 7.611213 AATGACTTATAAAAGTGAACGGAGG 57.389 36.000 0.00 0.00 46.09 4.30
3961 6603 8.717821 TGAAATGACTTATAAAAGTGAACGGAG 58.282 33.333 0.00 0.00 46.09 4.63
3962 6604 8.610248 TGAAATGACTTATAAAAGTGAACGGA 57.390 30.769 0.00 0.00 46.09 4.69
3963 6605 8.717821 TCTGAAATGACTTATAAAAGTGAACGG 58.282 33.333 0.00 0.00 46.09 4.44
3964 6606 9.530129 GTCTGAAATGACTTATAAAAGTGAACG 57.470 33.333 0.00 0.00 46.09 3.95
4001 6643 9.128107 CGTTTCAGACATTATGCAAAATAACTT 57.872 29.630 0.00 0.00 0.00 2.66
4002 6644 8.296713 ACGTTTCAGACATTATGCAAAATAACT 58.703 29.630 0.00 0.00 0.00 2.24
4003 6645 8.447787 ACGTTTCAGACATTATGCAAAATAAC 57.552 30.769 0.00 0.00 0.00 1.89
4004 6646 9.469807 AAACGTTTCAGACATTATGCAAAATAA 57.530 25.926 7.96 0.00 0.00 1.40
4006 6648 7.945033 AAACGTTTCAGACATTATGCAAAAT 57.055 28.000 7.96 0.00 0.00 1.82
4007 6649 7.915923 TGTAAACGTTTCAGACATTATGCAAAA 59.084 29.630 18.42 0.00 0.00 2.44
4008 6650 7.418408 TGTAAACGTTTCAGACATTATGCAAA 58.582 30.769 18.42 0.00 0.00 3.68
4009 6651 6.960468 TGTAAACGTTTCAGACATTATGCAA 58.040 32.000 18.42 0.00 0.00 4.08
4010 6652 6.546972 TGTAAACGTTTCAGACATTATGCA 57.453 33.333 18.42 0.00 0.00 3.96
4011 6653 7.409343 GCTTTGTAAACGTTTCAGACATTATGC 60.409 37.037 18.42 11.69 0.00 3.14
4012 6654 7.060633 GGCTTTGTAAACGTTTCAGACATTATG 59.939 37.037 18.42 6.29 0.00 1.90
4013 6655 7.040686 AGGCTTTGTAAACGTTTCAGACATTAT 60.041 33.333 18.42 0.00 0.00 1.28
4014 6656 6.261381 AGGCTTTGTAAACGTTTCAGACATTA 59.739 34.615 18.42 7.10 0.00 1.90
4015 6657 5.067283 AGGCTTTGTAAACGTTTCAGACATT 59.933 36.000 18.42 0.00 0.00 2.71
4016 6658 4.578928 AGGCTTTGTAAACGTTTCAGACAT 59.421 37.500 18.42 0.00 0.00 3.06
4017 6659 3.942748 AGGCTTTGTAAACGTTTCAGACA 59.057 39.130 18.42 13.74 0.00 3.41
4018 6660 4.547406 AGGCTTTGTAAACGTTTCAGAC 57.453 40.909 18.42 11.08 0.00 3.51
4019 6661 6.870971 ATAAGGCTTTGTAAACGTTTCAGA 57.129 33.333 18.42 9.65 0.00 3.27
4020 6662 9.453325 TTTTATAAGGCTTTGTAAACGTTTCAG 57.547 29.630 18.42 10.47 32.00 3.02
4021 6663 9.798994 TTTTTATAAGGCTTTGTAAACGTTTCA 57.201 25.926 18.42 12.41 32.00 2.69
4024 6666 9.968870 TCATTTTTATAAGGCTTTGTAAACGTT 57.031 25.926 4.45 0.00 32.00 3.99
4025 6667 9.968870 TTCATTTTTATAAGGCTTTGTAAACGT 57.031 25.926 4.45 0.67 32.00 3.99
4031 6673 8.306761 CCTCTGTTCATTTTTATAAGGCTTTGT 58.693 33.333 4.45 0.00 0.00 2.83
4032 6674 7.761249 CCCTCTGTTCATTTTTATAAGGCTTTG 59.239 37.037 4.45 0.00 0.00 2.77
4033 6675 7.673926 TCCCTCTGTTCATTTTTATAAGGCTTT 59.326 33.333 4.45 0.00 0.00 3.51
4034 6676 7.182060 TCCCTCTGTTCATTTTTATAAGGCTT 58.818 34.615 4.58 4.58 0.00 4.35
4035 6677 6.731467 TCCCTCTGTTCATTTTTATAAGGCT 58.269 36.000 0.00 0.00 0.00 4.58
4036 6678 6.603599 ACTCCCTCTGTTCATTTTTATAAGGC 59.396 38.462 0.00 0.00 0.00 4.35
4037 6679 9.853177 ATACTCCCTCTGTTCATTTTTATAAGG 57.147 33.333 0.00 0.00 0.00 2.69
4073 6715 9.070210 ACCTTATAAACCCTAAGAGGAGAAAAT 57.930 33.333 0.00 0.00 37.67 1.82
4074 6716 8.458951 ACCTTATAAACCCTAAGAGGAGAAAA 57.541 34.615 0.00 0.00 37.67 2.29
4086 6728 5.666265 CCTACTTCCAGACCTTATAAACCCT 59.334 44.000 0.00 0.00 0.00 4.34
4087 6729 5.686913 GCCTACTTCCAGACCTTATAAACCC 60.687 48.000 0.00 0.00 0.00 4.11
4100 6742 2.514458 ATGGTTTGGCCTACTTCCAG 57.486 50.000 3.32 0.00 38.35 3.86
4106 6748 0.817654 GCTGGAATGGTTTGGCCTAC 59.182 55.000 3.32 1.58 38.35 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.