Multiple sequence alignment - TraesCS2A01G331000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G331000 chr2A 100.000 4286 0 0 1 4286 563937647 563941932 0.000000e+00 7915.0
1 TraesCS2A01G331000 chr2A 95.549 337 8 3 1948 2280 769528539 769528872 2.270000e-147 532.0
2 TraesCS2A01G331000 chr2A 94.955 337 10 3 1951 2283 4055750 4055417 4.910000e-144 521.0
3 TraesCS2A01G331000 chr2A 88.430 121 13 1 3774 3893 33730541 33730421 1.240000e-30 145.0
4 TraesCS2A01G331000 chr2D 94.519 3412 131 27 404 3785 424652050 424648665 0.000000e+00 5214.0
5 TraesCS2A01G331000 chr2D 92.969 256 16 2 152 406 424652473 424652219 5.230000e-99 372.0
6 TraesCS2A01G331000 chr2D 90.728 151 4 2 3972 4112 424648285 424648135 4.370000e-45 193.0
7 TraesCS2A01G331000 chr2D 89.076 119 12 1 3775 3893 272263181 272263064 3.450000e-31 147.0
8 TraesCS2A01G331000 chr2B 94.134 3171 140 17 384 3540 499552830 499549692 0.000000e+00 4783.0
9 TraesCS2A01G331000 chr2B 88.496 226 25 1 152 376 499553172 499552947 5.460000e-69 272.0
10 TraesCS2A01G331000 chr2B 93.671 158 9 1 3959 4115 499549447 499549290 7.170000e-58 235.0
11 TraesCS2A01G331000 chr2B 87.963 108 7 1 1 102 499553278 499553171 5.820000e-24 122.0
12 TraesCS2A01G331000 chr3A 94.955 337 10 3 1951 2283 706561811 706561478 4.910000e-144 521.0
13 TraesCS2A01G331000 chr3A 87.903 124 13 2 3775 3896 443410339 443410462 1.240000e-30 145.0
14 TraesCS2A01G331000 chr3A 97.500 40 1 0 116 155 83768602 83768563 7.690000e-08 69.4
15 TraesCS2A01G331000 chr4A 94.498 309 9 4 1948 2252 624483251 624483555 1.800000e-128 470.0
16 TraesCS2A01G331000 chr4A 94.382 178 5 3 4114 4286 591677920 591678097 7.060000e-68 268.0
17 TraesCS2A01G331000 chr4A 93.785 177 7 3 4114 4286 589103498 589103674 3.290000e-66 263.0
18 TraesCS2A01G331000 chr4A 92.523 107 8 0 3787 3893 381227047 381226941 2.060000e-33 154.0
19 TraesCS2A01G331000 chr1A 94.771 306 8 4 1951 2252 569659565 569659264 1.800000e-128 470.0
20 TraesCS2A01G331000 chr1A 94.788 307 7 5 1951 2252 569701375 569701073 1.800000e-128 470.0
21 TraesCS2A01G331000 chr1A 94.444 306 9 4 1951 2252 569741313 569741012 8.390000e-127 464.0
22 TraesCS2A01G331000 chr1A 92.778 180 9 3 4111 4286 21791529 21791708 1.530000e-64 257.0
23 TraesCS2A01G331000 chr6A 94.350 177 5 4 4114 4286 212170386 212170561 2.540000e-67 267.0
24 TraesCS2A01G331000 chr6A 93.785 177 7 3 4114 4286 50464285 50464109 3.290000e-66 263.0
25 TraesCS2A01G331000 chr6A 93.220 177 8 4 4112 4286 11669653 11669479 1.530000e-64 257.0
26 TraesCS2A01G331000 chr6A 94.059 101 6 0 3787 3887 12457479 12457579 2.060000e-33 154.0
27 TraesCS2A01G331000 chr6A 97.436 39 1 0 116 154 599169766 599169804 2.770000e-07 67.6
28 TraesCS2A01G331000 chr5A 93.296 179 9 3 4111 4286 683275006 683274828 1.180000e-65 261.0
29 TraesCS2A01G331000 chr5A 95.050 101 5 0 3787 3887 663713648 663713748 4.440000e-35 159.0
30 TraesCS2A01G331000 chr5A 91.150 113 9 1 3775 3886 27737002 27736890 7.420000e-33 152.0
31 TraesCS2A01G331000 chr7A 92.737 179 10 2 4111 4286 258402704 258402882 5.500000e-64 255.0
32 TraesCS2A01G331000 chr7A 97.500 40 1 0 116 155 558749257 558749296 7.690000e-08 69.4
33 TraesCS2A01G331000 chr7A 97.500 40 1 0 116 155 566097270 566097231 7.690000e-08 69.4
34 TraesCS2A01G331000 chr5B 91.892 185 11 4 4105 4286 376339343 376339160 5.500000e-64 255.0
35 TraesCS2A01G331000 chr7D 92.661 109 8 0 3787 3895 598013057 598012949 1.600000e-34 158.0
36 TraesCS2A01G331000 chr7D 89.744 117 12 0 3779 3895 633342082 633342198 2.670000e-32 150.0
37 TraesCS2A01G331000 chr6D 97.500 40 1 0 116 155 413047997 413047958 7.690000e-08 69.4
38 TraesCS2A01G331000 chr5D 93.478 46 3 0 112 157 456619050 456619095 7.690000e-08 69.4
39 TraesCS2A01G331000 chr5D 97.500 40 1 0 116 155 539458790 539458751 7.690000e-08 69.4
40 TraesCS2A01G331000 chr3D 95.349 43 1 1 116 157 290592765 290592807 2.770000e-07 67.6
41 TraesCS2A01G331000 chr3B 95.238 42 2 0 116 157 658489015 658489056 2.770000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G331000 chr2A 563937647 563941932 4285 False 7915.000000 7915 100.000000 1 4286 1 chr2A.!!$F1 4285
1 TraesCS2A01G331000 chr2D 424648135 424652473 4338 True 1926.333333 5214 92.738667 152 4112 3 chr2D.!!$R2 3960
2 TraesCS2A01G331000 chr2B 499549290 499553278 3988 True 1353.000000 4783 91.066000 1 4115 4 chr2B.!!$R1 4114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
853 1152 0.108041 TTCCTCGGGGTGCGAAATAC 60.108 55.000 0.00 0.00 0.00 1.89 F
977 1276 0.390735 GCGTAGGATTGACCGGTTGT 60.391 55.000 9.42 0.00 44.74 3.32 F
1540 1839 0.874607 AGGTTGCAAGACACGTCGAC 60.875 55.000 5.18 5.18 34.09 4.20 F
2916 3224 1.000955 GAGTTGGAGACCGAGCTTGAA 59.999 52.381 1.22 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2455 2756 1.179152 TCCAGAAGTGCATGCATTGG 58.821 50.0 25.64 25.43 0.00 3.16 R
2916 3224 2.452600 TTTTGTCCTGAAGGTGGCTT 57.547 45.0 0.00 0.00 36.34 4.35 R
3042 3350 0.031449 TGAGCAACATCGTCGTGTCA 59.969 50.0 0.00 0.00 0.00 3.58 R
3809 4207 0.099259 ATGCATCCATTTGTGCGACG 59.901 50.0 0.00 0.00 44.11 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.631257 TTATTATGCATGGAGAGATTTCTTTGA 57.369 29.630 10.16 0.00 32.53 2.69
30 31 4.643784 GCATGGAGAGATTTCTTTGATGGT 59.356 41.667 0.00 0.00 32.53 3.55
31 32 5.450137 GCATGGAGAGATTTCTTTGATGGTG 60.450 44.000 0.00 0.00 32.53 4.17
65 66 8.872845 GTGCCAAAATCACAAATTAAATAGGAG 58.127 33.333 0.00 0.00 34.73 3.69
67 68 7.548780 GCCAAAATCACAAATTAAATAGGAGCA 59.451 33.333 0.00 0.00 0.00 4.26
100 107 4.328118 AAAGATTGAGGGCCTCTTTGAT 57.672 40.909 32.28 20.30 37.72 2.57
101 108 5.456921 AAAGATTGAGGGCCTCTTTGATA 57.543 39.130 32.28 10.07 37.72 2.15
102 109 4.703379 AGATTGAGGGCCTCTTTGATAG 57.297 45.455 32.28 0.00 0.00 2.08
103 110 4.043596 AGATTGAGGGCCTCTTTGATAGT 58.956 43.478 32.28 9.50 0.00 2.12
104 111 3.914426 TTGAGGGCCTCTTTGATAGTC 57.086 47.619 32.28 5.10 0.00 2.59
105 112 2.119495 TGAGGGCCTCTTTGATAGTCC 58.881 52.381 32.28 4.27 0.00 3.85
106 113 1.418264 GAGGGCCTCTTTGATAGTCCC 59.582 57.143 26.44 0.00 32.74 4.46
107 114 1.010170 AGGGCCTCTTTGATAGTCCCT 59.990 52.381 0.00 0.00 35.79 4.20
108 115 1.418264 GGGCCTCTTTGATAGTCCCTC 59.582 57.143 0.84 0.00 0.00 4.30
109 116 2.403561 GGCCTCTTTGATAGTCCCTCT 58.596 52.381 0.00 0.00 0.00 3.69
110 117 3.577919 GGCCTCTTTGATAGTCCCTCTA 58.422 50.000 0.00 0.00 0.00 2.43
111 118 3.322541 GGCCTCTTTGATAGTCCCTCTAC 59.677 52.174 0.00 0.00 0.00 2.59
112 119 4.219919 GCCTCTTTGATAGTCCCTCTACT 58.780 47.826 0.00 0.00 0.00 2.57
113 120 4.651962 GCCTCTTTGATAGTCCCTCTACTT 59.348 45.833 0.00 0.00 0.00 2.24
114 121 5.221362 GCCTCTTTGATAGTCCCTCTACTTC 60.221 48.000 0.00 0.00 0.00 3.01
115 122 6.133356 CCTCTTTGATAGTCCCTCTACTTCT 58.867 44.000 0.00 0.00 0.00 2.85
116 123 7.291566 CCTCTTTGATAGTCCCTCTACTTCTA 58.708 42.308 0.00 0.00 0.00 2.10
117 124 7.947890 CCTCTTTGATAGTCCCTCTACTTCTAT 59.052 40.741 0.00 0.00 0.00 1.98
126 133 8.528044 AGTCCCTCTACTTCTATAAAGTTGAG 57.472 38.462 17.03 17.03 44.22 3.02
127 134 8.117312 AGTCCCTCTACTTCTATAAAGTTGAGT 58.883 37.037 20.15 6.55 43.60 3.41
128 135 8.407832 GTCCCTCTACTTCTATAAAGTTGAGTC 58.592 40.741 20.15 11.35 43.60 3.36
129 136 8.114102 TCCCTCTACTTCTATAAAGTTGAGTCA 58.886 37.037 20.15 9.40 43.60 3.41
130 137 8.192110 CCCTCTACTTCTATAAAGTTGAGTCAC 58.808 40.741 20.15 0.00 43.60 3.67
131 138 8.962679 CCTCTACTTCTATAAAGTTGAGTCACT 58.037 37.037 20.15 0.00 43.60 3.41
141 148 8.934023 ATAAAGTTGAGTCACTTATTTTGGGA 57.066 30.769 0.00 0.00 35.87 4.37
142 149 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
143 150 5.690865 AGTTGAGTCACTTATTTTGGGACA 58.309 37.500 0.00 0.00 0.00 4.02
144 151 6.605594 AAGTTGAGTCACTTATTTTGGGACAA 59.394 34.615 0.00 0.00 38.34 3.18
145 152 7.123547 AAGTTGAGTCACTTATTTTGGGACAAA 59.876 33.333 0.00 0.00 38.34 2.83
220 227 7.169140 GGATTTTTCTTCTACGTGCATTGTTTT 59.831 33.333 0.00 0.00 0.00 2.43
225 232 7.428282 TCTTCTACGTGCATTGTTTTATTCA 57.572 32.000 0.00 0.00 0.00 2.57
228 235 7.139896 TCTACGTGCATTGTTTTATTCACAT 57.860 32.000 0.00 0.00 0.00 3.21
245 252 5.635417 TCACATGAATGCAATCCGTAAAA 57.365 34.783 0.00 0.00 0.00 1.52
247 254 6.092092 TCACATGAATGCAATCCGTAAAAAG 58.908 36.000 0.00 0.00 0.00 2.27
250 257 7.276218 CACATGAATGCAATCCGTAAAAAGAAT 59.724 33.333 0.00 0.00 0.00 2.40
252 259 7.810766 TGAATGCAATCCGTAAAAAGAATTC 57.189 32.000 0.00 0.00 0.00 2.17
253 260 6.526325 TGAATGCAATCCGTAAAAAGAATTCG 59.474 34.615 0.00 0.00 0.00 3.34
304 312 8.472413 CACAGAAATATTTTCATCCACTCCAAT 58.528 33.333 1.43 0.00 0.00 3.16
378 495 3.929094 TGGCATTCTTTTCCTGCATTTC 58.071 40.909 0.00 0.00 37.64 2.17
381 498 4.390909 GGCATTCTTTTCCTGCATTTCTTG 59.609 41.667 0.00 0.00 37.64 3.02
450 738 4.500116 GTCGGCGCTCCCTCTGAC 62.500 72.222 7.64 0.75 0.00 3.51
455 743 2.829003 CGCTCCCTCTGACGCCTA 60.829 66.667 0.00 0.00 0.00 3.93
459 747 3.541713 CCCTCTGACGCCTAGGCC 61.542 72.222 28.09 15.42 37.98 5.19
461 749 1.152735 CCTCTGACGCCTAGGCCTA 60.153 63.158 28.09 13.09 37.98 3.93
462 750 1.175983 CCTCTGACGCCTAGGCCTAG 61.176 65.000 30.05 30.05 37.98 3.02
463 751 1.801309 CTCTGACGCCTAGGCCTAGC 61.801 65.000 31.33 24.32 37.98 3.42
464 752 3.200887 CTGACGCCTAGGCCTAGCG 62.201 68.421 34.89 34.89 38.07 4.26
467 755 2.907917 CGCCTAGGCCTAGCGTCT 60.908 66.667 31.52 6.12 37.98 4.18
468 756 2.491022 CGCCTAGGCCTAGCGTCTT 61.491 63.158 31.52 5.45 37.98 3.01
469 757 1.364536 GCCTAGGCCTAGCGTCTTC 59.635 63.158 31.33 12.87 34.56 2.87
470 758 1.392710 GCCTAGGCCTAGCGTCTTCA 61.393 60.000 31.33 0.00 34.56 3.02
471 759 0.386113 CCTAGGCCTAGCGTCTTCAC 59.614 60.000 31.33 0.00 31.95 3.18
472 760 0.386113 CTAGGCCTAGCGTCTTCACC 59.614 60.000 26.62 0.00 0.00 4.02
473 761 1.381928 TAGGCCTAGCGTCTTCACCG 61.382 60.000 8.91 0.00 0.00 4.94
474 762 2.202756 GCCTAGCGTCTTCACCGG 60.203 66.667 0.00 0.00 0.00 5.28
591 879 1.173913 CACTTCACGGAAATTCCCCC 58.826 55.000 6.42 0.00 31.13 5.40
593 881 1.271926 ACTTCACGGAAATTCCCCCAG 60.272 52.381 6.42 0.46 31.13 4.45
663 951 3.969250 TTTCCACTCATCCGCCGCC 62.969 63.158 0.00 0.00 0.00 6.13
853 1152 0.108041 TTCCTCGGGGTGCGAAATAC 60.108 55.000 0.00 0.00 0.00 1.89
928 1227 3.460857 AACCCTAGAAATCTAGCTGCG 57.539 47.619 11.25 0.00 43.47 5.18
931 1230 2.101582 CCCTAGAAATCTAGCTGCGTGT 59.898 50.000 11.25 0.00 43.47 4.49
932 1231 3.119291 CCTAGAAATCTAGCTGCGTGTG 58.881 50.000 11.25 0.00 43.47 3.82
977 1276 0.390735 GCGTAGGATTGACCGGTTGT 60.391 55.000 9.42 0.00 44.74 3.32
999 1298 7.027874 TGTGGTTAAGGATTCTGGAATTAGT 57.972 36.000 0.00 0.00 0.00 2.24
1021 1320 9.635404 TTAGTATGGATAATTTGGGGTTTACAG 57.365 33.333 0.00 0.00 0.00 2.74
1076 1375 3.118075 AGGCTGCTTCTAAATTCCTCTCC 60.118 47.826 0.00 0.00 0.00 3.71
1078 1377 3.462021 CTGCTTCTAAATTCCTCTCCCG 58.538 50.000 0.00 0.00 0.00 5.14
1217 1516 1.351430 GACGACTATGCTGTTGCGCA 61.351 55.000 5.66 5.66 45.10 6.09
1286 1585 3.758023 CACACATCACCAAGGAAAGCATA 59.242 43.478 0.00 0.00 0.00 3.14
1293 1592 2.238646 ACCAAGGAAAGCATATCGACCA 59.761 45.455 0.00 0.00 0.00 4.02
1440 1739 3.439857 AGTCCCAGCTTTATTGCAAGA 57.560 42.857 4.94 0.00 34.99 3.02
1445 1744 5.934043 GTCCCAGCTTTATTGCAAGAAAATT 59.066 36.000 18.94 8.34 34.99 1.82
1479 1778 5.636965 GTCAATGATAGATGGACATCGGAAG 59.363 44.000 6.65 0.00 42.48 3.46
1507 1806 7.038302 GGAAAAGGATTAGGGTGAAGGATTTTT 60.038 37.037 0.00 0.00 0.00 1.94
1540 1839 0.874607 AGGTTGCAAGACACGTCGAC 60.875 55.000 5.18 5.18 34.09 4.20
1732 2031 2.903357 CAGGGGATGAGGACGTGG 59.097 66.667 0.00 0.00 0.00 4.94
1761 2060 6.205853 GGGGTTTTGTAAATTTGGATGAAACC 59.794 38.462 18.29 18.29 42.34 3.27
1989 2289 1.756538 CACCTTTTCCCACTGTGCTTT 59.243 47.619 1.29 0.00 0.00 3.51
2173 2473 6.061022 TGATCTTTACTGGGCAATTGACTA 57.939 37.500 11.97 3.70 0.00 2.59
2350 2651 3.057969 TGTCATGCCGTGAAGATTTCT 57.942 42.857 0.00 0.00 38.90 2.52
2358 2659 2.404215 CGTGAAGATTTCTGACCGTGT 58.596 47.619 0.00 0.00 0.00 4.49
2385 2686 7.472334 AGAATCCTTGCACAATATTGAAAGT 57.528 32.000 22.16 6.93 0.00 2.66
2415 2716 9.952188 TTGTCATGACATAATTTTGTAAACGAA 57.048 25.926 28.32 5.14 41.52 3.85
2455 2756 9.609346 AACTAGGTTTATGTGTTATGTGGATAC 57.391 33.333 0.00 0.00 0.00 2.24
2471 2772 2.954318 GGATACCAATGCATGCACTTCT 59.046 45.455 25.37 3.57 0.00 2.85
2594 2902 1.134280 CCCTCTGGCCTCTATTGTGTG 60.134 57.143 3.32 0.00 0.00 3.82
2777 3085 6.957920 TCAAAAGATGGAATGTCTTGAACA 57.042 33.333 0.00 0.00 43.51 3.18
2916 3224 1.000955 GAGTTGGAGACCGAGCTTGAA 59.999 52.381 1.22 0.00 0.00 2.69
3050 3358 2.579787 CGCCGGAGATGACACGAC 60.580 66.667 5.05 0.00 0.00 4.34
3087 3395 4.608948 ACAAGACACGGAGAAGAAGATT 57.391 40.909 0.00 0.00 0.00 2.40
3099 3407 5.413833 GGAGAAGAAGATTGTGATGCTGAAA 59.586 40.000 0.00 0.00 0.00 2.69
3318 3626 4.448060 AGTTAGCGCTTGTTTTAGTCTGTC 59.552 41.667 18.68 0.00 0.00 3.51
3424 3733 1.154908 CGTGTGAAACTACGCGTGC 60.155 57.895 24.59 6.48 46.24 5.34
3540 3849 1.299850 GGCAGTTCCGTTTGGCAAC 60.300 57.895 0.00 0.00 39.44 4.17
3541 3850 1.299850 GCAGTTCCGTTTGGCAACC 60.300 57.895 0.00 0.00 34.14 3.77
3546 3934 0.741915 TTCCGTTTGGCAACCAGTTC 59.258 50.000 0.00 0.00 33.81 3.01
3567 3955 4.442706 TCCATTCTGCTCTCCGTTAATTC 58.557 43.478 0.00 0.00 0.00 2.17
3572 3960 2.606725 CTGCTCTCCGTTAATTCAGCAG 59.393 50.000 4.46 4.46 45.69 4.24
3573 3961 2.233676 TGCTCTCCGTTAATTCAGCAGA 59.766 45.455 0.00 0.00 33.09 4.26
3574 3962 3.262420 GCTCTCCGTTAATTCAGCAGAA 58.738 45.455 0.00 0.00 38.31 3.02
3575 3963 3.308323 GCTCTCCGTTAATTCAGCAGAAG 59.692 47.826 0.00 0.00 37.14 2.85
3576 3964 3.861840 TCTCCGTTAATTCAGCAGAAGG 58.138 45.455 0.00 0.00 37.14 3.46
3577 3965 3.513912 TCTCCGTTAATTCAGCAGAAGGA 59.486 43.478 0.00 0.00 37.14 3.36
3578 3966 3.596214 TCCGTTAATTCAGCAGAAGGAC 58.404 45.455 0.00 0.00 37.14 3.85
3579 3967 3.007506 TCCGTTAATTCAGCAGAAGGACA 59.992 43.478 0.00 0.00 37.14 4.02
3588 3976 1.301293 CAGAAGGACAGGAAGGGCC 59.699 63.158 0.00 0.00 0.00 5.80
3654 4048 4.864916 CAGCGTGCTGTGTAAAATATCT 57.135 40.909 13.62 0.00 39.10 1.98
3662 4056 6.863126 GTGCTGTGTAAAATATCTGCTGTTTT 59.137 34.615 0.00 0.00 33.38 2.43
3671 4065 8.492673 AAAATATCTGCTGTTTTCATCTACGA 57.507 30.769 0.00 0.00 0.00 3.43
3682 4076 7.406553 TGTTTTCATCTACGACAGTTTCTTTG 58.593 34.615 0.00 0.00 0.00 2.77
3708 4102 2.146342 CCTTCGCTGAAGAAAAGCTCA 58.854 47.619 16.51 0.00 41.71 4.26
3713 4110 2.777094 GCTGAAGAAAAGCTCACTCCT 58.223 47.619 0.00 0.00 37.69 3.69
3731 4128 2.026822 TCCTGGTCTCCATTTCTTCAGC 60.027 50.000 0.00 0.00 30.82 4.26
3738 4135 1.352017 TCCATTTCTTCAGCAGCAGGA 59.648 47.619 0.00 0.00 0.00 3.86
3762 4160 0.178990 AAGGTCCAGGTTTGACTGCC 60.179 55.000 0.00 0.00 37.16 4.85
3785 4183 6.176183 CCCTTTGAGTGAGTCTTCAATGTAT 58.824 40.000 10.21 0.00 34.49 2.29
3786 4184 6.656693 CCCTTTGAGTGAGTCTTCAATGTATT 59.343 38.462 10.21 0.00 34.49 1.89
3787 4185 7.824289 CCCTTTGAGTGAGTCTTCAATGTATTA 59.176 37.037 10.21 0.00 34.49 0.98
3788 4186 8.660373 CCTTTGAGTGAGTCTTCAATGTATTAC 58.340 37.037 10.21 0.00 34.49 1.89
3789 4187 9.429359 CTTTGAGTGAGTCTTCAATGTATTACT 57.571 33.333 10.21 0.00 34.49 2.24
3790 4188 8.988064 TTGAGTGAGTCTTCAATGTATTACTC 57.012 34.615 6.57 0.00 34.49 2.59
3791 4189 7.548097 TGAGTGAGTCTTCAATGTATTACTCC 58.452 38.462 0.00 0.00 34.49 3.85
3792 4190 6.879400 AGTGAGTCTTCAATGTATTACTCCC 58.121 40.000 0.00 0.00 34.49 4.30
3793 4191 6.670027 AGTGAGTCTTCAATGTATTACTCCCT 59.330 38.462 0.00 0.00 34.49 4.20
3794 4192 6.981559 GTGAGTCTTCAATGTATTACTCCCTC 59.018 42.308 0.00 0.00 34.49 4.30
3795 4193 6.098409 TGAGTCTTCAATGTATTACTCCCTCC 59.902 42.308 0.00 0.00 33.94 4.30
3796 4194 5.069251 AGTCTTCAATGTATTACTCCCTCCG 59.931 44.000 0.00 0.00 0.00 4.63
3797 4195 4.960469 TCTTCAATGTATTACTCCCTCCGT 59.040 41.667 0.00 0.00 0.00 4.69
3798 4196 5.424252 TCTTCAATGTATTACTCCCTCCGTT 59.576 40.000 0.00 0.00 0.00 4.44
3799 4197 5.687166 TCAATGTATTACTCCCTCCGTTT 57.313 39.130 0.00 0.00 0.00 3.60
3800 4198 5.667466 TCAATGTATTACTCCCTCCGTTTC 58.333 41.667 0.00 0.00 0.00 2.78
3801 4199 5.188163 TCAATGTATTACTCCCTCCGTTTCA 59.812 40.000 0.00 0.00 0.00 2.69
3802 4200 5.687166 ATGTATTACTCCCTCCGTTTCAA 57.313 39.130 0.00 0.00 0.00 2.69
3803 4201 5.486735 TGTATTACTCCCTCCGTTTCAAA 57.513 39.130 0.00 0.00 0.00 2.69
3804 4202 6.057321 TGTATTACTCCCTCCGTTTCAAAT 57.943 37.500 0.00 0.00 0.00 2.32
3805 4203 6.478129 TGTATTACTCCCTCCGTTTCAAATT 58.522 36.000 0.00 0.00 0.00 1.82
3806 4204 7.622713 TGTATTACTCCCTCCGTTTCAAATTA 58.377 34.615 0.00 0.00 0.00 1.40
3807 4205 6.997239 ATTACTCCCTCCGTTTCAAATTAC 57.003 37.500 0.00 0.00 0.00 1.89
3808 4206 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
3809 4207 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
3810 4208 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
3811 4209 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
3812 4210 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
3813 4211 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
3814 4212 2.409378 TCCGTTTCAAATTACTCGTCGC 59.591 45.455 0.00 0.00 0.00 5.19
3815 4213 2.156117 CCGTTTCAAATTACTCGTCGCA 59.844 45.455 0.00 0.00 0.00 5.10
3816 4214 3.143279 CGTTTCAAATTACTCGTCGCAC 58.857 45.455 0.00 0.00 0.00 5.34
3817 4215 3.362207 CGTTTCAAATTACTCGTCGCACA 60.362 43.478 0.00 0.00 0.00 4.57
3818 4216 4.520078 GTTTCAAATTACTCGTCGCACAA 58.480 39.130 0.00 0.00 0.00 3.33
3819 4217 4.797693 TTCAAATTACTCGTCGCACAAA 57.202 36.364 0.00 0.00 0.00 2.83
3820 4218 5.351233 TTCAAATTACTCGTCGCACAAAT 57.649 34.783 0.00 0.00 0.00 2.32
3821 4219 4.707563 TCAAATTACTCGTCGCACAAATG 58.292 39.130 0.00 0.00 0.00 2.32
3822 4220 3.740044 AATTACTCGTCGCACAAATGG 57.260 42.857 0.00 0.00 0.00 3.16
3823 4221 2.442212 TTACTCGTCGCACAAATGGA 57.558 45.000 0.00 0.00 0.00 3.41
3824 4222 2.665649 TACTCGTCGCACAAATGGAT 57.334 45.000 0.00 0.00 0.00 3.41
3825 4223 1.078709 ACTCGTCGCACAAATGGATG 58.921 50.000 0.00 0.00 0.00 3.51
3826 4224 0.247814 CTCGTCGCACAAATGGATGC 60.248 55.000 0.00 0.00 38.52 3.91
3827 4225 0.952984 TCGTCGCACAAATGGATGCA 60.953 50.000 0.00 0.00 42.17 3.96
3828 4226 0.099259 CGTCGCACAAATGGATGCAT 59.901 50.000 0.00 0.00 42.17 3.96
3829 4227 1.467883 CGTCGCACAAATGGATGCATT 60.468 47.619 6.63 6.63 42.17 3.56
3830 4228 2.609350 GTCGCACAAATGGATGCATTT 58.391 42.857 18.40 18.40 42.17 2.32
3831 4229 3.730362 CGTCGCACAAATGGATGCATTTA 60.730 43.478 22.75 6.44 42.17 1.40
3832 4230 3.792956 GTCGCACAAATGGATGCATTTAG 59.207 43.478 22.75 18.61 42.17 1.85
3833 4231 3.693578 TCGCACAAATGGATGCATTTAGA 59.306 39.130 22.75 16.46 42.17 2.10
3834 4232 4.157472 TCGCACAAATGGATGCATTTAGAA 59.843 37.500 22.75 9.33 42.17 2.10
3835 4233 5.045215 CGCACAAATGGATGCATTTAGAAT 58.955 37.500 22.75 8.15 42.17 2.40
3836 4234 5.521010 CGCACAAATGGATGCATTTAGAATT 59.479 36.000 22.75 0.00 42.17 2.17
3837 4235 6.696583 CGCACAAATGGATGCATTTAGAATTA 59.303 34.615 22.75 0.00 42.17 1.40
3838 4236 7.222417 CGCACAAATGGATGCATTTAGAATTAA 59.778 33.333 22.75 0.00 42.17 1.40
3839 4237 8.881743 GCACAAATGGATGCATTTAGAATTAAA 58.118 29.630 22.75 0.00 41.65 1.52
3867 4265 8.262601 ACATTTAGATACATCCATACCTGTGA 57.737 34.615 0.00 0.00 0.00 3.58
3868 4266 8.150945 ACATTTAGATACATCCATACCTGTGAC 58.849 37.037 0.00 0.00 0.00 3.67
3869 4267 7.669089 TTTAGATACATCCATACCTGTGACA 57.331 36.000 0.00 0.00 0.00 3.58
3870 4268 7.669089 TTAGATACATCCATACCTGTGACAA 57.331 36.000 0.00 0.00 0.00 3.18
3871 4269 6.166984 AGATACATCCATACCTGTGACAAG 57.833 41.667 0.00 0.00 0.00 3.16
3872 4270 5.663106 AGATACATCCATACCTGTGACAAGT 59.337 40.000 0.00 0.00 0.00 3.16
3873 4271 6.839134 AGATACATCCATACCTGTGACAAGTA 59.161 38.462 0.00 0.00 0.00 2.24
3874 4272 5.755409 ACATCCATACCTGTGACAAGTAA 57.245 39.130 0.00 0.00 0.00 2.24
3875 4273 6.313519 ACATCCATACCTGTGACAAGTAAT 57.686 37.500 0.00 0.00 0.00 1.89
3876 4274 6.721318 ACATCCATACCTGTGACAAGTAATT 58.279 36.000 0.00 0.00 0.00 1.40
3877 4275 6.823689 ACATCCATACCTGTGACAAGTAATTC 59.176 38.462 0.00 0.00 0.00 2.17
3878 4276 5.416083 TCCATACCTGTGACAAGTAATTCG 58.584 41.667 0.00 0.00 0.00 3.34
3879 4277 5.186215 TCCATACCTGTGACAAGTAATTCGA 59.814 40.000 0.00 0.00 0.00 3.71
3880 4278 5.872617 CCATACCTGTGACAAGTAATTCGAA 59.127 40.000 0.00 0.00 0.00 3.71
3881 4279 6.370442 CCATACCTGTGACAAGTAATTCGAAA 59.630 38.462 0.00 0.00 0.00 3.46
3882 4280 5.668558 ACCTGTGACAAGTAATTCGAAAC 57.331 39.130 0.00 0.00 0.00 2.78
3883 4281 4.210537 ACCTGTGACAAGTAATTCGAAACG 59.789 41.667 0.00 0.00 0.00 3.60
3884 4282 4.377022 CCTGTGACAAGTAATTCGAAACGG 60.377 45.833 0.00 0.00 0.00 4.44
3885 4283 4.370049 TGTGACAAGTAATTCGAAACGGA 58.630 39.130 0.00 0.00 0.00 4.69
3886 4284 4.446385 TGTGACAAGTAATTCGAAACGGAG 59.554 41.667 0.00 0.00 0.00 4.63
3887 4285 4.682860 GTGACAAGTAATTCGAAACGGAGA 59.317 41.667 0.00 0.00 0.00 3.71
3888 4286 5.176223 GTGACAAGTAATTCGAAACGGAGAA 59.824 40.000 0.00 0.00 0.00 2.87
3889 4287 5.754406 TGACAAGTAATTCGAAACGGAGAAA 59.246 36.000 0.00 0.00 0.00 2.52
3890 4288 6.073980 TGACAAGTAATTCGAAACGGAGAAAG 60.074 38.462 0.00 0.00 0.00 2.62
3891 4289 5.756833 ACAAGTAATTCGAAACGGAGAAAGT 59.243 36.000 0.00 0.00 0.00 2.66
3892 4290 6.925165 ACAAGTAATTCGAAACGGAGAAAGTA 59.075 34.615 0.00 0.00 0.00 2.24
3930 4332 9.548208 CAAGCAAGTAATTAGCTTCTAAACTTC 57.452 33.333 7.31 0.00 46.01 3.01
3935 4337 7.548967 AGTAATTAGCTTCTAAACTTCGCTCT 58.451 34.615 0.00 0.00 32.49 4.09
3952 4354 1.079543 CTGGGCGGTCAGAACTGAG 60.080 63.158 4.67 0.00 40.75 3.35
4061 4771 2.526304 TCGTTCAAGGACCAAGACAG 57.474 50.000 0.00 0.00 0.00 3.51
4115 4825 2.159099 CGCCAGTAGCATGTTCCTTAGA 60.159 50.000 0.00 0.00 44.04 2.10
4116 4826 3.462021 GCCAGTAGCATGTTCCTTAGAG 58.538 50.000 0.00 0.00 42.97 2.43
4117 4827 3.462021 CCAGTAGCATGTTCCTTAGAGC 58.538 50.000 0.00 0.00 0.00 4.09
4118 4828 3.118629 CCAGTAGCATGTTCCTTAGAGCA 60.119 47.826 0.00 0.00 37.65 4.26
4119 4829 4.444022 CCAGTAGCATGTTCCTTAGAGCAT 60.444 45.833 0.00 0.00 43.95 3.79
4120 4830 4.749099 CAGTAGCATGTTCCTTAGAGCATC 59.251 45.833 0.00 0.00 41.51 3.91
4131 4841 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
4157 4867 2.046604 GGGGGCGTCTAAAAGCGT 60.047 61.111 0.00 0.00 0.00 5.07
4158 4868 2.104859 GGGGGCGTCTAAAAGCGTC 61.105 63.158 0.00 0.00 0.00 5.19
4159 4869 2.450345 GGGGCGTCTAAAAGCGTCG 61.450 63.158 0.00 0.00 33.04 5.12
4160 4870 2.394524 GGCGTCTAAAAGCGTCGC 59.605 61.111 9.80 9.80 44.95 5.19
4161 4871 2.394524 GCGTCTAAAAGCGTCGCC 59.605 61.111 14.86 0.00 40.83 5.54
4162 4872 2.092882 GCGTCTAAAAGCGTCGCCT 61.093 57.895 14.86 0.00 40.83 5.52
4163 4873 1.702299 CGTCTAAAAGCGTCGCCTG 59.298 57.895 14.86 0.00 0.00 4.85
4164 4874 1.683790 CGTCTAAAAGCGTCGCCTGG 61.684 60.000 14.86 0.91 0.00 4.45
4165 4875 1.079405 TCTAAAAGCGTCGCCTGGG 60.079 57.895 14.86 1.03 0.00 4.45
4166 4876 1.079405 CTAAAAGCGTCGCCTGGGA 60.079 57.895 14.86 0.00 0.00 4.37
4167 4877 1.079405 TAAAAGCGTCGCCTGGGAG 60.079 57.895 14.86 0.00 0.00 4.30
4168 4878 1.823169 TAAAAGCGTCGCCTGGGAGT 61.823 55.000 14.86 0.00 0.00 3.85
4169 4879 3.883744 AAAGCGTCGCCTGGGAGTG 62.884 63.158 14.86 0.00 0.00 3.51
4171 4881 4.803426 GCGTCGCCTGGGAGTGAG 62.803 72.222 5.75 0.00 0.00 3.51
4172 4882 4.803426 CGTCGCCTGGGAGTGAGC 62.803 72.222 0.00 0.00 0.00 4.26
4173 4883 4.459089 GTCGCCTGGGAGTGAGCC 62.459 72.222 0.00 0.00 0.00 4.70
4182 4892 3.353836 GAGTGAGCCGGCGCAAAA 61.354 61.111 34.87 9.90 37.52 2.44
4183 4893 2.903547 GAGTGAGCCGGCGCAAAAA 61.904 57.895 34.87 9.47 37.52 1.94
4246 4956 2.203098 GCCCCAGGCGCGTATTAA 60.203 61.111 8.43 0.00 39.62 1.40
4247 4957 1.820481 GCCCCAGGCGCGTATTAAA 60.820 57.895 8.43 0.00 39.62 1.52
4248 4958 1.378124 GCCCCAGGCGCGTATTAAAA 61.378 55.000 8.43 0.00 39.62 1.52
4249 4959 1.314730 CCCCAGGCGCGTATTAAAAT 58.685 50.000 8.43 0.00 0.00 1.82
4250 4960 2.496111 CCCCAGGCGCGTATTAAAATA 58.504 47.619 8.43 0.00 0.00 1.40
4251 4961 2.879646 CCCCAGGCGCGTATTAAAATAA 59.120 45.455 8.43 0.00 0.00 1.40
4252 4962 3.315749 CCCCAGGCGCGTATTAAAATAAA 59.684 43.478 8.43 0.00 0.00 1.40
4253 4963 4.202030 CCCCAGGCGCGTATTAAAATAAAA 60.202 41.667 8.43 0.00 0.00 1.52
4254 4964 5.341617 CCCAGGCGCGTATTAAAATAAAAA 58.658 37.500 8.43 0.00 0.00 1.94
4271 4981 3.665544 AAAAAGGACCGTTCGACGA 57.334 47.368 8.63 0.00 46.05 4.20
4272 4982 1.938625 AAAAAGGACCGTTCGACGAA 58.061 45.000 6.10 6.10 46.05 3.85
4273 4983 1.494824 AAAAGGACCGTTCGACGAAG 58.505 50.000 11.25 2.73 46.05 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 7.182761 CACGTCTAATCACCATCAAAGAAATC 58.817 38.462 0.00 0.00 0.00 2.17
21 22 3.063997 GGCACGTCTAATCACCATCAAAG 59.936 47.826 0.00 0.00 0.00 2.77
26 27 2.779755 TTGGCACGTCTAATCACCAT 57.220 45.000 0.00 0.00 0.00 3.55
30 31 4.068599 TGTGATTTTGGCACGTCTAATCA 58.931 39.130 0.00 0.00 39.07 2.57
31 32 4.678509 TGTGATTTTGGCACGTCTAATC 57.321 40.909 0.00 0.00 39.07 1.75
65 66 7.420800 CCCTCAATCTTTTATTGTGAGTATGC 58.579 38.462 0.00 0.00 35.07 3.14
67 68 6.547510 GGCCCTCAATCTTTTATTGTGAGTAT 59.452 38.462 0.00 0.00 35.07 2.12
100 107 9.629878 CTCAACTTTATAGAAGTAGAGGGACTA 57.370 37.037 0.00 0.00 41.55 2.59
102 109 8.296211 ACTCAACTTTATAGAAGTAGAGGGAC 57.704 38.462 0.00 0.00 0.00 4.46
103 110 8.114102 TGACTCAACTTTATAGAAGTAGAGGGA 58.886 37.037 0.00 0.00 0.00 4.20
104 111 8.192110 GTGACTCAACTTTATAGAAGTAGAGGG 58.808 40.741 0.00 0.00 0.00 4.30
105 112 8.962679 AGTGACTCAACTTTATAGAAGTAGAGG 58.037 37.037 0.00 0.00 0.00 3.69
116 123 8.793592 GTCCCAAAATAAGTGACTCAACTTTAT 58.206 33.333 0.00 0.00 40.77 1.40
117 124 7.776030 TGTCCCAAAATAAGTGACTCAACTTTA 59.224 33.333 0.00 0.00 40.77 1.85
118 125 6.605594 TGTCCCAAAATAAGTGACTCAACTTT 59.394 34.615 0.00 0.00 40.77 2.66
119 126 6.126409 TGTCCCAAAATAAGTGACTCAACTT 58.874 36.000 0.00 0.00 42.89 2.66
120 127 5.690865 TGTCCCAAAATAAGTGACTCAACT 58.309 37.500 0.00 0.00 0.00 3.16
121 128 6.385649 TTGTCCCAAAATAAGTGACTCAAC 57.614 37.500 0.00 0.00 0.00 3.18
122 129 6.040391 CCTTTGTCCCAAAATAAGTGACTCAA 59.960 38.462 0.00 0.00 0.00 3.02
123 130 5.534654 CCTTTGTCCCAAAATAAGTGACTCA 59.465 40.000 0.00 0.00 0.00 3.41
124 131 5.048013 CCCTTTGTCCCAAAATAAGTGACTC 60.048 44.000 0.00 0.00 0.00 3.36
125 132 4.832823 CCCTTTGTCCCAAAATAAGTGACT 59.167 41.667 0.00 0.00 0.00 3.41
126 133 4.830600 TCCCTTTGTCCCAAAATAAGTGAC 59.169 41.667 0.00 0.00 0.00 3.67
127 134 5.068215 TCCCTTTGTCCCAAAATAAGTGA 57.932 39.130 0.00 0.00 0.00 3.41
128 135 4.832823 ACTCCCTTTGTCCCAAAATAAGTG 59.167 41.667 0.00 0.00 0.00 3.16
129 136 5.074746 ACTCCCTTTGTCCCAAAATAAGT 57.925 39.130 0.00 0.00 0.00 2.24
130 137 6.007703 TGTACTCCCTTTGTCCCAAAATAAG 58.992 40.000 0.00 0.00 0.00 1.73
131 138 5.954757 TGTACTCCCTTTGTCCCAAAATAA 58.045 37.500 0.00 0.00 0.00 1.40
132 139 5.586155 TGTACTCCCTTTGTCCCAAAATA 57.414 39.130 0.00 0.00 0.00 1.40
133 140 4.463050 TGTACTCCCTTTGTCCCAAAAT 57.537 40.909 0.00 0.00 0.00 1.82
134 141 3.955524 TGTACTCCCTTTGTCCCAAAA 57.044 42.857 0.00 0.00 0.00 2.44
135 142 3.955524 TTGTACTCCCTTTGTCCCAAA 57.044 42.857 0.00 0.00 0.00 3.28
136 143 3.435890 CCTTTGTACTCCCTTTGTCCCAA 60.436 47.826 0.00 0.00 0.00 4.12
137 144 2.107552 CCTTTGTACTCCCTTTGTCCCA 59.892 50.000 0.00 0.00 0.00 4.37
138 145 2.374170 TCCTTTGTACTCCCTTTGTCCC 59.626 50.000 0.00 0.00 0.00 4.46
139 146 3.782656 TCCTTTGTACTCCCTTTGTCC 57.217 47.619 0.00 0.00 0.00 4.02
140 147 7.939784 ATAAATCCTTTGTACTCCCTTTGTC 57.060 36.000 0.00 0.00 0.00 3.18
141 148 9.816787 TTTATAAATCCTTTGTACTCCCTTTGT 57.183 29.630 0.00 0.00 0.00 2.83
143 150 9.475620 CCTTTATAAATCCTTTGTACTCCCTTT 57.524 33.333 0.00 0.00 0.00 3.11
144 151 8.842764 TCCTTTATAAATCCTTTGTACTCCCTT 58.157 33.333 0.00 0.00 0.00 3.95
145 152 8.401955 TCCTTTATAAATCCTTTGTACTCCCT 57.598 34.615 0.00 0.00 0.00 4.20
146 153 9.642343 ATTCCTTTATAAATCCTTTGTACTCCC 57.358 33.333 0.00 0.00 0.00 4.30
185 192 9.760660 CACGTAGAAGAAAAATCCTAAGAATTG 57.239 33.333 0.00 0.00 0.00 2.32
189 196 6.460781 TGCACGTAGAAGAAAAATCCTAAGA 58.539 36.000 0.00 0.00 0.00 2.10
192 199 6.653320 ACAATGCACGTAGAAGAAAAATCCTA 59.347 34.615 0.00 0.00 0.00 2.94
202 209 7.075121 TGTGAATAAAACAATGCACGTAGAAG 58.925 34.615 0.00 0.00 38.12 2.85
220 227 6.934048 TTACGGATTGCATTCATGTGAATA 57.066 33.333 10.55 0.00 42.41 1.75
225 232 6.266168 TCTTTTTACGGATTGCATTCATGT 57.734 33.333 10.55 10.04 0.00 3.21
228 235 6.526325 CGAATTCTTTTTACGGATTGCATTCA 59.474 34.615 10.55 0.00 0.00 2.57
245 252 9.014297 AGAACAAATGAATCCTAACGAATTCTT 57.986 29.630 3.52 0.07 0.00 2.52
247 254 9.922305 CTAGAACAAATGAATCCTAACGAATTC 57.078 33.333 0.00 0.00 0.00 2.17
250 257 9.667107 AATCTAGAACAAATGAATCCTAACGAA 57.333 29.630 0.00 0.00 0.00 3.85
252 259 9.922305 GAAATCTAGAACAAATGAATCCTAACG 57.078 33.333 0.00 0.00 0.00 3.18
304 312 7.255590 GGAAAACAGAGGAATTTTCACATGAGA 60.256 37.037 0.00 0.00 43.55 3.27
363 371 5.128499 TGGAAACAAGAAATGCAGGAAAAGA 59.872 36.000 0.00 0.00 37.44 2.52
381 498 4.320608 TGTGAAAGGCAGAAATGGAAAC 57.679 40.909 0.00 0.00 0.00 2.78
446 734 2.731374 GCTAGGCCTAGGCGTCAG 59.269 66.667 35.44 24.06 43.06 3.51
447 735 3.217017 CGCTAGGCCTAGGCGTCA 61.217 66.667 35.44 15.49 43.06 4.35
448 736 3.196913 GACGCTAGGCCTAGGCGTC 62.197 68.421 41.03 41.03 45.36 5.19
449 737 3.217743 GACGCTAGGCCTAGGCGT 61.218 66.667 38.81 38.81 43.22 5.68
450 738 2.409241 GAAGACGCTAGGCCTAGGCG 62.409 65.000 34.89 34.89 43.06 5.52
451 739 1.364536 GAAGACGCTAGGCCTAGGC 59.635 63.158 35.44 26.55 41.06 3.93
453 741 0.386113 GGTGAAGACGCTAGGCCTAG 59.614 60.000 32.12 32.12 36.29 3.02
454 742 1.381928 CGGTGAAGACGCTAGGCCTA 61.382 60.000 13.09 13.09 0.00 3.93
455 743 2.711922 CGGTGAAGACGCTAGGCCT 61.712 63.158 11.78 11.78 0.00 5.19
459 747 1.030488 TCTCCCGGTGAAGACGCTAG 61.030 60.000 0.00 0.00 0.00 3.42
461 749 1.469335 TTTCTCCCGGTGAAGACGCT 61.469 55.000 0.00 0.00 0.00 5.07
462 750 0.601841 TTTTCTCCCGGTGAAGACGC 60.602 55.000 0.00 0.00 0.00 5.19
463 751 1.429463 CTTTTCTCCCGGTGAAGACG 58.571 55.000 0.00 0.00 0.00 4.18
464 752 1.346722 TCCTTTTCTCCCGGTGAAGAC 59.653 52.381 0.00 0.00 0.00 3.01
467 755 2.440253 TCTTTCCTTTTCTCCCGGTGAA 59.560 45.455 0.00 1.34 0.00 3.18
468 756 2.051692 TCTTTCCTTTTCTCCCGGTGA 58.948 47.619 0.00 0.00 0.00 4.02
469 757 2.561478 TCTTTCCTTTTCTCCCGGTG 57.439 50.000 0.00 0.00 0.00 4.94
470 758 4.288887 AGTTATCTTTCCTTTTCTCCCGGT 59.711 41.667 0.00 0.00 0.00 5.28
471 759 4.844884 AGTTATCTTTCCTTTTCTCCCGG 58.155 43.478 0.00 0.00 0.00 5.73
472 760 5.354513 GGAAGTTATCTTTCCTTTTCTCCCG 59.645 44.000 0.00 0.00 33.64 5.14
473 761 5.652891 GGGAAGTTATCTTTCCTTTTCTCCC 59.347 44.000 3.84 0.00 44.02 4.30
474 762 5.354513 CGGGAAGTTATCTTTCCTTTTCTCC 59.645 44.000 8.89 0.00 44.94 3.71
600 888 4.023792 CGGGCGGCGTATATATATGTAGAA 60.024 45.833 9.37 0.00 0.00 2.10
784 1083 2.210144 TACCCCACAAGCTGCCATCC 62.210 60.000 0.00 0.00 0.00 3.51
828 1127 3.861797 CACCCCGAGGAATCCCCG 61.862 72.222 0.00 0.00 40.87 5.73
928 1227 0.169009 GAAGCTCAATTCGGCCACAC 59.831 55.000 2.24 0.00 0.00 3.82
931 1230 1.003580 AGAAGAAGCTCAATTCGGCCA 59.996 47.619 2.24 0.00 34.27 5.36
932 1231 1.743996 AGAAGAAGCTCAATTCGGCC 58.256 50.000 0.00 0.00 34.27 6.13
977 1276 8.217799 CCATACTAATTCCAGAATCCTTAACCA 58.782 37.037 0.00 0.00 0.00 3.67
999 1298 6.678547 AGCTGTAAACCCCAAATTATCCATA 58.321 36.000 0.00 0.00 0.00 2.74
1021 1320 1.152673 CCAAATCCCTGCCCCTAGC 60.153 63.158 0.00 0.00 44.14 3.42
1076 1375 1.837090 CCCCCTCTAATCCCAACGG 59.163 63.158 0.00 0.00 0.00 4.44
1096 1395 5.793457 GTGTACACTGCAATTCGGTTAAATC 59.207 40.000 18.92 0.00 30.14 2.17
1217 1516 1.004044 AGCATGGCAGAGCTAACTTGT 59.996 47.619 14.65 0.00 39.78 3.16
1293 1592 1.918957 CCCAATCTTCTCCACCTCCTT 59.081 52.381 0.00 0.00 0.00 3.36
1309 1608 3.537337 TGACTCTTAATTCCCTCCCCAA 58.463 45.455 0.00 0.00 0.00 4.12
1402 1701 7.474936 GCTGGGACTTAATATCCTTTGGTCTAT 60.475 40.741 6.01 0.00 36.40 1.98
1415 1714 7.116075 TCTTGCAATAAAGCTGGGACTTAATA 58.884 34.615 0.00 0.00 34.99 0.98
1440 1739 8.336235 TCTATCATTGACCCCACTAAGAATTTT 58.664 33.333 0.00 0.00 0.00 1.82
1445 1744 5.307976 CCATCTATCATTGACCCCACTAAGA 59.692 44.000 0.00 0.00 0.00 2.10
1479 1778 3.627492 CCTTCACCCTAATCCTTTTCCCC 60.627 52.174 0.00 0.00 0.00 4.81
1507 1806 1.477923 GCAACCTACTCCACCCAAACA 60.478 52.381 0.00 0.00 0.00 2.83
1540 1839 0.396811 CCCTTGGTCCTAATAGCCCG 59.603 60.000 0.00 0.00 0.00 6.13
1732 2031 7.672240 TCATCCAAATTTACAAAACCCCTTAC 58.328 34.615 0.00 0.00 0.00 2.34
1761 2060 6.860023 ACTCATTTTCTTCATTTTGCTCTTCG 59.140 34.615 0.00 0.00 0.00 3.79
1989 2289 5.598416 ATCATAGTCTGTCGATGGTTCAA 57.402 39.130 0.00 0.00 31.59 2.69
2173 2473 6.990908 ACTACCTATCGCCCTTAAATTAGT 57.009 37.500 0.00 0.00 0.00 2.24
2314 2615 9.429359 ACGGCATGACATTCAAAATAAAAATAA 57.571 25.926 0.00 0.00 0.00 1.40
2327 2628 4.095483 AGAAATCTTCACGGCATGACATTC 59.905 41.667 0.00 0.00 36.92 2.67
2330 2631 2.743664 CAGAAATCTTCACGGCATGACA 59.256 45.455 0.00 0.00 36.92 3.58
2350 2651 3.071479 GCAAGGATTCTTAACACGGTCA 58.929 45.455 0.00 0.00 0.00 4.02
2358 2659 9.859427 CTTTCAATATTGTGCAAGGATTCTTAA 57.141 29.630 14.97 0.00 0.00 1.85
2396 2697 9.872757 TGAAGAGTTCGTTTACAAAATTATGTC 57.127 29.630 0.00 0.00 34.75 3.06
2415 2716 5.746990 AACCTAGTTATGCTGTGAAGAGT 57.253 39.130 0.00 0.00 0.00 3.24
2455 2756 1.179152 TCCAGAAGTGCATGCATTGG 58.821 50.000 25.64 25.43 0.00 3.16
2485 2793 6.929049 TGATTCCTTATAACATGAAGTAGCCG 59.071 38.462 0.00 0.00 0.00 5.52
2594 2902 4.946784 ACAGGTAATTCAACAGAATCGC 57.053 40.909 0.00 0.00 30.96 4.58
2777 3085 4.060038 TCTGACGCTTCTTTCAGTTTCT 57.940 40.909 0.00 0.00 40.25 2.52
2916 3224 2.452600 TTTTGTCCTGAAGGTGGCTT 57.547 45.000 0.00 0.00 36.34 4.35
3039 3347 1.067565 AGCAACATCGTCGTGTCATCT 60.068 47.619 0.00 0.00 0.00 2.90
3042 3350 0.031449 TGAGCAACATCGTCGTGTCA 59.969 50.000 0.00 0.00 0.00 3.58
3050 3358 2.995939 TCTTGTAGCTTGAGCAACATCG 59.004 45.455 5.70 0.00 45.16 3.84
3099 3407 1.356059 TCTAGTCTGTCCACCTGCTCT 59.644 52.381 0.00 0.00 0.00 4.09
3221 3529 4.563580 CGAAGAACATCTTGAGGGAAAGGA 60.564 45.833 0.00 0.00 36.73 3.36
3291 3599 5.862860 AGACTAAAACAAGCGCTAACTAGTC 59.137 40.000 23.71 23.71 36.06 2.59
3318 3626 6.822073 TCAATCGACCGAATTTACATACAG 57.178 37.500 0.00 0.00 0.00 2.74
3372 3681 2.667536 CGTGGCAGCAGCTTCACT 60.668 61.111 18.42 0.00 41.70 3.41
3424 3733 4.675146 GCACACACATAATTTACAGCAGGG 60.675 45.833 0.00 0.00 0.00 4.45
3536 3845 1.200948 GAGCAGAATGGAACTGGTTGC 59.799 52.381 0.00 0.00 35.86 4.17
3540 3849 1.741732 CGGAGAGCAGAATGGAACTGG 60.742 57.143 0.00 0.00 35.86 4.00
3541 3850 1.066573 ACGGAGAGCAGAATGGAACTG 60.067 52.381 0.00 0.00 35.86 3.16
3546 3934 4.191544 TGAATTAACGGAGAGCAGAATGG 58.808 43.478 0.00 0.00 35.86 3.16
3567 3955 0.035630 CCCTTCCTGTCCTTCTGCTG 60.036 60.000 0.00 0.00 0.00 4.41
3572 3960 0.322906 CAAGGCCCTTCCTGTCCTTC 60.323 60.000 0.00 0.00 46.94 3.46
3573 3961 1.068352 ACAAGGCCCTTCCTGTCCTT 61.068 55.000 0.00 0.00 46.94 3.36
3574 3962 1.068352 AACAAGGCCCTTCCTGTCCT 61.068 55.000 0.00 0.00 46.94 3.85
3575 3963 0.178961 AAACAAGGCCCTTCCTGTCC 60.179 55.000 0.00 0.00 46.94 4.02
3576 3964 1.341209 CAAAACAAGGCCCTTCCTGTC 59.659 52.381 0.00 0.00 46.94 3.51
3577 3965 1.063266 TCAAAACAAGGCCCTTCCTGT 60.063 47.619 0.00 0.00 46.94 4.00
3578 3966 1.341209 GTCAAAACAAGGCCCTTCCTG 59.659 52.381 0.00 0.00 46.94 3.86
3588 3976 2.097466 AGGAACGTGCAGTCAAAACAAG 59.903 45.455 0.00 0.00 0.00 3.16
3654 4048 3.990092 ACTGTCGTAGATGAAAACAGCA 58.010 40.909 0.00 0.00 40.74 4.41
3662 4056 4.282449 TCCCAAAGAAACTGTCGTAGATGA 59.718 41.667 0.00 0.00 40.67 2.92
3671 4065 0.853530 AGGGCTCCCAAAGAAACTGT 59.146 50.000 7.82 0.00 38.92 3.55
3708 4102 3.251484 TGAAGAAATGGAGACCAGGAGT 58.749 45.455 0.00 0.00 36.75 3.85
3713 4110 2.877300 GCTGCTGAAGAAATGGAGACCA 60.877 50.000 0.00 0.00 38.19 4.02
3762 4160 7.678947 AATACATTGAAGACTCACTCAAAGG 57.321 36.000 0.00 0.00 0.00 3.11
3785 4183 6.117975 AGTAATTTGAAACGGAGGGAGTAA 57.882 37.500 0.00 0.00 0.00 2.24
3786 4184 5.622914 CGAGTAATTTGAAACGGAGGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
3787 4185 4.576879 GAGTAATTTGAAACGGAGGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
3788 4186 3.617263 CGAGTAATTTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
3789 4187 3.007182 ACGAGTAATTTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
3790 4188 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
3791 4189 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
3792 4190 3.481467 GCGACGAGTAATTTGAAACGGAG 60.481 47.826 0.00 0.00 0.00 4.63
3793 4191 2.409378 GCGACGAGTAATTTGAAACGGA 59.591 45.455 0.00 0.00 0.00 4.69
3794 4192 2.156117 TGCGACGAGTAATTTGAAACGG 59.844 45.455 0.00 0.00 0.00 4.44
3795 4193 3.143279 GTGCGACGAGTAATTTGAAACG 58.857 45.455 0.00 0.00 0.00 3.60
3796 4194 4.123276 TGTGCGACGAGTAATTTGAAAC 57.877 40.909 0.00 0.00 0.00 2.78
3797 4195 4.797693 TTGTGCGACGAGTAATTTGAAA 57.202 36.364 0.00 0.00 0.00 2.69
3798 4196 4.797693 TTTGTGCGACGAGTAATTTGAA 57.202 36.364 0.00 0.00 0.00 2.69
3799 4197 4.377943 CCATTTGTGCGACGAGTAATTTGA 60.378 41.667 0.00 0.00 0.00 2.69
3800 4198 3.845775 CCATTTGTGCGACGAGTAATTTG 59.154 43.478 0.00 0.00 0.00 2.32
3801 4199 3.749088 TCCATTTGTGCGACGAGTAATTT 59.251 39.130 0.00 0.00 0.00 1.82
3802 4200 3.331150 TCCATTTGTGCGACGAGTAATT 58.669 40.909 0.00 0.00 0.00 1.40
3803 4201 2.967362 TCCATTTGTGCGACGAGTAAT 58.033 42.857 0.00 0.00 0.00 1.89
3804 4202 2.442212 TCCATTTGTGCGACGAGTAA 57.558 45.000 0.00 0.00 0.00 2.24
3805 4203 2.267426 CATCCATTTGTGCGACGAGTA 58.733 47.619 0.00 0.00 0.00 2.59
3806 4204 1.078709 CATCCATTTGTGCGACGAGT 58.921 50.000 0.00 0.00 0.00 4.18
3807 4205 0.247814 GCATCCATTTGTGCGACGAG 60.248 55.000 0.00 0.00 0.00 4.18
3808 4206 0.952984 TGCATCCATTTGTGCGACGA 60.953 50.000 0.00 0.00 44.11 4.20
3809 4207 0.099259 ATGCATCCATTTGTGCGACG 59.901 50.000 0.00 0.00 44.11 5.12
3810 4208 2.282701 AATGCATCCATTTGTGCGAC 57.717 45.000 0.00 0.00 44.11 5.19
3841 4239 9.374711 TCACAGGTATGGATGTATCTAAATGTA 57.625 33.333 0.00 0.00 0.00 2.29
3842 4240 8.150945 GTCACAGGTATGGATGTATCTAAATGT 58.849 37.037 0.00 0.00 0.00 2.71
3843 4241 8.150296 TGTCACAGGTATGGATGTATCTAAATG 58.850 37.037 0.00 0.00 0.00 2.32
3844 4242 8.262601 TGTCACAGGTATGGATGTATCTAAAT 57.737 34.615 0.00 0.00 0.00 1.40
3845 4243 7.669089 TGTCACAGGTATGGATGTATCTAAA 57.331 36.000 0.00 0.00 0.00 1.85
3846 4244 7.344612 ACTTGTCACAGGTATGGATGTATCTAA 59.655 37.037 0.00 0.00 0.00 2.10
3847 4245 6.839134 ACTTGTCACAGGTATGGATGTATCTA 59.161 38.462 0.00 0.00 0.00 1.98
3848 4246 5.663106 ACTTGTCACAGGTATGGATGTATCT 59.337 40.000 0.00 0.00 0.00 1.98
3849 4247 5.918608 ACTTGTCACAGGTATGGATGTATC 58.081 41.667 0.00 0.00 0.00 2.24
3850 4248 5.957771 ACTTGTCACAGGTATGGATGTAT 57.042 39.130 0.00 0.00 0.00 2.29
3851 4249 6.860790 TTACTTGTCACAGGTATGGATGTA 57.139 37.500 0.00 0.00 0.00 2.29
3852 4250 5.755409 TTACTTGTCACAGGTATGGATGT 57.245 39.130 0.00 0.00 0.00 3.06
3853 4251 6.018751 CGAATTACTTGTCACAGGTATGGATG 60.019 42.308 0.00 0.00 0.00 3.51
3854 4252 6.049149 CGAATTACTTGTCACAGGTATGGAT 58.951 40.000 0.00 0.00 0.00 3.41
3855 4253 5.186215 TCGAATTACTTGTCACAGGTATGGA 59.814 40.000 0.00 0.00 0.00 3.41
3856 4254 5.416083 TCGAATTACTTGTCACAGGTATGG 58.584 41.667 0.00 0.00 0.00 2.74
3857 4255 6.961359 TTCGAATTACTTGTCACAGGTATG 57.039 37.500 0.00 0.00 0.00 2.39
3858 4256 6.090358 CGTTTCGAATTACTTGTCACAGGTAT 59.910 38.462 0.00 0.00 0.00 2.73
3859 4257 5.403166 CGTTTCGAATTACTTGTCACAGGTA 59.597 40.000 0.00 0.00 0.00 3.08
3860 4258 4.210537 CGTTTCGAATTACTTGTCACAGGT 59.789 41.667 0.00 0.00 0.00 4.00
3861 4259 4.377022 CCGTTTCGAATTACTTGTCACAGG 60.377 45.833 0.00 0.00 0.00 4.00
3862 4260 4.446385 TCCGTTTCGAATTACTTGTCACAG 59.554 41.667 0.00 0.00 0.00 3.66
3863 4261 4.370049 TCCGTTTCGAATTACTTGTCACA 58.630 39.130 0.00 0.00 0.00 3.58
3864 4262 4.682860 TCTCCGTTTCGAATTACTTGTCAC 59.317 41.667 0.00 0.00 0.00 3.67
3865 4263 4.873817 TCTCCGTTTCGAATTACTTGTCA 58.126 39.130 0.00 0.00 0.00 3.58
3866 4264 5.834239 TTCTCCGTTTCGAATTACTTGTC 57.166 39.130 0.00 0.00 0.00 3.18
3867 4265 5.756833 ACTTTCTCCGTTTCGAATTACTTGT 59.243 36.000 0.00 0.00 0.00 3.16
3868 4266 6.224420 ACTTTCTCCGTTTCGAATTACTTG 57.776 37.500 0.00 0.00 0.00 3.16
3869 4267 7.150640 ACTACTTTCTCCGTTTCGAATTACTT 58.849 34.615 0.00 0.00 0.00 2.24
3870 4268 6.685657 ACTACTTTCTCCGTTTCGAATTACT 58.314 36.000 0.00 0.00 0.00 2.24
3871 4269 6.583806 TGACTACTTTCTCCGTTTCGAATTAC 59.416 38.462 0.00 0.00 0.00 1.89
3872 4270 6.680810 TGACTACTTTCTCCGTTTCGAATTA 58.319 36.000 0.00 0.00 0.00 1.40
3873 4271 5.535333 TGACTACTTTCTCCGTTTCGAATT 58.465 37.500 0.00 0.00 0.00 2.17
3874 4272 5.130292 TGACTACTTTCTCCGTTTCGAAT 57.870 39.130 0.00 0.00 0.00 3.34
3875 4273 4.572985 TGACTACTTTCTCCGTTTCGAA 57.427 40.909 0.00 0.00 0.00 3.71
3876 4274 4.778534 ATGACTACTTTCTCCGTTTCGA 57.221 40.909 0.00 0.00 0.00 3.71
3877 4275 5.003214 CGTAATGACTACTTTCTCCGTTTCG 59.997 44.000 0.00 0.00 0.00 3.46
3878 4276 5.287992 CCGTAATGACTACTTTCTCCGTTTC 59.712 44.000 0.00 0.00 0.00 2.78
3879 4277 5.047802 TCCGTAATGACTACTTTCTCCGTTT 60.048 40.000 0.00 0.00 0.00 3.60
3880 4278 4.460382 TCCGTAATGACTACTTTCTCCGTT 59.540 41.667 0.00 0.00 0.00 4.44
3881 4279 4.012374 TCCGTAATGACTACTTTCTCCGT 58.988 43.478 0.00 0.00 0.00 4.69
3882 4280 4.142534 TGTCCGTAATGACTACTTTCTCCG 60.143 45.833 0.00 0.00 36.21 4.63
3883 4281 5.320549 TGTCCGTAATGACTACTTTCTCC 57.679 43.478 0.00 0.00 36.21 3.71
3884 4282 5.288952 GCTTGTCCGTAATGACTACTTTCTC 59.711 44.000 0.00 0.00 36.21 2.87
3885 4283 5.169295 GCTTGTCCGTAATGACTACTTTCT 58.831 41.667 0.00 0.00 36.21 2.52
3886 4284 4.927425 TGCTTGTCCGTAATGACTACTTTC 59.073 41.667 0.00 0.00 36.21 2.62
3887 4285 4.890088 TGCTTGTCCGTAATGACTACTTT 58.110 39.130 0.00 0.00 36.21 2.66
3888 4286 4.530710 TGCTTGTCCGTAATGACTACTT 57.469 40.909 0.00 0.00 36.21 2.24
3889 4287 4.021368 ACTTGCTTGTCCGTAATGACTACT 60.021 41.667 0.00 0.00 36.21 2.57
3890 4288 4.243270 ACTTGCTTGTCCGTAATGACTAC 58.757 43.478 0.00 0.00 36.21 2.73
3891 4289 4.530710 ACTTGCTTGTCCGTAATGACTA 57.469 40.909 0.00 0.00 36.21 2.59
3892 4290 3.402628 ACTTGCTTGTCCGTAATGACT 57.597 42.857 0.00 0.00 36.21 3.41
3935 4337 3.059982 CTCAGTTCTGACCGCCCA 58.940 61.111 0.00 0.00 0.00 5.36
3952 4354 2.526120 GCATCGCCGTTACAGGAGC 61.526 63.158 0.00 0.00 0.00 4.70
3976 4678 0.179012 TGTGTTTCCTCCGGGTTTCC 60.179 55.000 0.00 0.00 0.00 3.13
3992 4694 2.046507 GGGTCAGAGCTGCCTGTG 60.047 66.667 14.79 3.26 35.71 3.66
4140 4850 2.046604 ACGCTTTTAGACGCCCCC 60.047 61.111 0.00 0.00 0.00 5.40
4141 4851 2.450345 CGACGCTTTTAGACGCCCC 61.450 63.158 0.00 0.00 0.00 5.80
4142 4852 3.078560 CGACGCTTTTAGACGCCC 58.921 61.111 0.00 0.00 0.00 6.13
4143 4853 2.394524 GCGACGCTTTTAGACGCC 59.605 61.111 13.73 0.00 42.79 5.68
4144 4854 2.092882 AGGCGACGCTTTTAGACGC 61.093 57.895 20.77 0.00 46.79 5.19
4145 4855 1.683790 CCAGGCGACGCTTTTAGACG 61.684 60.000 20.77 0.00 0.00 4.18
4146 4856 1.359459 CCCAGGCGACGCTTTTAGAC 61.359 60.000 20.77 0.32 0.00 2.59
4147 4857 1.079405 CCCAGGCGACGCTTTTAGA 60.079 57.895 20.77 0.00 0.00 2.10
4148 4858 1.079405 TCCCAGGCGACGCTTTTAG 60.079 57.895 20.77 3.02 0.00 1.85
4149 4859 1.079405 CTCCCAGGCGACGCTTTTA 60.079 57.895 20.77 0.00 0.00 1.52
4150 4860 2.358737 CTCCCAGGCGACGCTTTT 60.359 61.111 20.77 2.89 0.00 2.27
4151 4861 3.626924 ACTCCCAGGCGACGCTTT 61.627 61.111 20.77 5.64 0.00 3.51
4152 4862 4.379243 CACTCCCAGGCGACGCTT 62.379 66.667 20.77 9.77 0.00 4.68
4154 4864 4.803426 CTCACTCCCAGGCGACGC 62.803 72.222 12.43 12.43 0.00 5.19
4155 4865 4.803426 GCTCACTCCCAGGCGACG 62.803 72.222 0.00 0.00 0.00 5.12
4156 4866 4.459089 GGCTCACTCCCAGGCGAC 62.459 72.222 0.00 0.00 0.00 5.19
4165 4875 2.903547 TTTTTGCGCCGGCTCACTC 61.904 57.895 26.68 8.64 40.82 3.51
4166 4876 2.904866 TTTTTGCGCCGGCTCACT 60.905 55.556 26.68 0.00 40.82 3.41
4229 4939 1.378124 TTTTAATACGCGCCTGGGGC 61.378 55.000 24.41 24.41 46.75 5.80
4230 4940 1.314730 ATTTTAATACGCGCCTGGGG 58.685 50.000 5.73 6.36 0.00 4.96
4231 4941 4.555348 TTTATTTTAATACGCGCCTGGG 57.445 40.909 5.73 0.00 0.00 4.45
4253 4963 1.862827 CTTCGTCGAACGGTCCTTTTT 59.137 47.619 2.90 0.00 42.81 1.94
4254 4964 1.202452 ACTTCGTCGAACGGTCCTTTT 60.202 47.619 2.90 0.00 42.81 2.27
4255 4965 0.386838 ACTTCGTCGAACGGTCCTTT 59.613 50.000 2.90 0.00 42.81 3.11
4256 4966 0.386838 AACTTCGTCGAACGGTCCTT 59.613 50.000 2.90 0.00 42.81 3.36
4257 4967 1.238439 TAACTTCGTCGAACGGTCCT 58.762 50.000 2.90 0.00 42.81 3.85
4258 4968 1.916000 CATAACTTCGTCGAACGGTCC 59.084 52.381 2.90 0.00 42.81 4.46
4259 4969 2.855180 TCATAACTTCGTCGAACGGTC 58.145 47.619 2.90 0.00 42.81 4.79
4260 4970 2.995466 TCATAACTTCGTCGAACGGT 57.005 45.000 2.90 0.00 42.81 4.83
4261 4971 5.937165 TTTATCATAACTTCGTCGAACGG 57.063 39.130 2.90 0.00 42.81 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.