Multiple sequence alignment - TraesCS2A01G330600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G330600 chr2A 100.000 2537 0 0 1 2537 563201480 563204016 0.000000e+00 4686
1 TraesCS2A01G330600 chr2A 91.565 735 43 6 1 723 66911569 66912296 0.000000e+00 996
2 TraesCS2A01G330600 chr2A 89.959 737 52 10 1 723 631956465 631955737 0.000000e+00 931
3 TraesCS2A01G330600 chr2A 85.990 414 55 3 1962 2373 677884365 677883953 8.330000e-120 440
4 TraesCS2A01G330600 chr2A 100.000 165 0 0 2373 2537 563210962 563211126 3.170000e-79 305
5 TraesCS2A01G330600 chr2D 90.250 1600 79 20 845 2373 425159195 425157602 0.000000e+00 2019
6 TraesCS2A01G330600 chr2D 94.180 378 21 1 1 377 67450604 67450227 2.190000e-160 575
7 TraesCS2A01G330600 chr2D 88.433 268 13 6 477 727 67449984 67449718 8.820000e-80 307
8 TraesCS2A01G330600 chr2B 94.348 867 40 3 828 1691 500455392 500454532 0.000000e+00 1321
9 TraesCS2A01G330600 chr2B 88.333 540 44 11 196 723 63058629 63059161 4.610000e-177 630
10 TraesCS2A01G330600 chr2B 88.630 387 41 3 1989 2373 500285171 500284786 3.820000e-128 468
11 TraesCS2A01G330600 chr4A 89.595 740 54 12 1 727 733663171 733663900 0.000000e+00 918
12 TraesCS2A01G330600 chr4A 89.445 739 58 8 1 726 415468051 415467320 0.000000e+00 915
13 TraesCS2A01G330600 chr4A 98.817 169 2 0 2369 2537 510806038 510806206 4.100000e-78 302
14 TraesCS2A01G330600 chr4A 99.394 165 1 0 2373 2537 510812591 510812755 1.480000e-77 300
15 TraesCS2A01G330600 chr7D 89.281 737 62 15 1 730 6580620 6579894 0.000000e+00 907
16 TraesCS2A01G330600 chr7D 86.124 418 55 3 1958 2373 199911993 199911577 4.980000e-122 448
17 TraesCS2A01G330600 chr7D 85.990 414 55 3 1962 2373 252066579 252066167 8.330000e-120 440
18 TraesCS2A01G330600 chr7A 89.084 742 62 13 1 730 7667084 7666350 0.000000e+00 904
19 TraesCS2A01G330600 chr7B 87.092 705 64 12 1 692 666517516 666518206 0.000000e+00 773
20 TraesCS2A01G330600 chr5D 87.791 516 33 12 221 723 331205530 331206028 6.090000e-161 577
21 TraesCS2A01G330600 chr3D 86.232 414 54 3 1962 2373 287297386 287296974 1.790000e-121 446
22 TraesCS2A01G330600 chr1D 86.024 415 54 4 1962 2373 70343959 70343546 2.320000e-120 442
23 TraesCS2A01G330600 chr1D 85.612 417 57 3 1959 2373 28071812 28072227 3.880000e-118 435
24 TraesCS2A01G330600 chrUn 85.990 414 55 3 1962 2373 415563148 415562736 8.330000e-120 440
25 TraesCS2A01G330600 chrUn 99.394 165 1 0 2373 2537 194759483 194759319 1.480000e-77 300
26 TraesCS2A01G330600 chr3A 87.812 320 37 2 31 349 658059417 658059099 8.570000e-100 374
27 TraesCS2A01G330600 chr3A 85.387 349 34 11 382 721 658059100 658058760 1.870000e-91 346
28 TraesCS2A01G330600 chr5A 99.394 165 1 0 2373 2537 409497663 409497499 1.480000e-77 300
29 TraesCS2A01G330600 chr5A 98.810 168 2 0 2370 2537 409504269 409504102 1.480000e-77 300
30 TraesCS2A01G330600 chr1B 99.394 165 1 0 2373 2537 165019520 165019356 1.480000e-77 300
31 TraesCS2A01G330600 chr1B 99.394 165 1 0 2373 2537 165030672 165030508 1.480000e-77 300
32 TraesCS2A01G330600 chr1A 99.394 165 1 0 2373 2537 237180425 237180589 1.480000e-77 300


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G330600 chr2A 563201480 563204016 2536 False 4686 4686 100.0000 1 2537 1 chr2A.!!$F2 2536
1 TraesCS2A01G330600 chr2A 66911569 66912296 727 False 996 996 91.5650 1 723 1 chr2A.!!$F1 722
2 TraesCS2A01G330600 chr2A 631955737 631956465 728 True 931 931 89.9590 1 723 1 chr2A.!!$R1 722
3 TraesCS2A01G330600 chr2D 425157602 425159195 1593 True 2019 2019 90.2500 845 2373 1 chr2D.!!$R1 1528
4 TraesCS2A01G330600 chr2D 67449718 67450604 886 True 441 575 91.3065 1 727 2 chr2D.!!$R2 726
5 TraesCS2A01G330600 chr2B 500454532 500455392 860 True 1321 1321 94.3480 828 1691 1 chr2B.!!$R2 863
6 TraesCS2A01G330600 chr2B 63058629 63059161 532 False 630 630 88.3330 196 723 1 chr2B.!!$F1 527
7 TraesCS2A01G330600 chr4A 733663171 733663900 729 False 918 918 89.5950 1 727 1 chr4A.!!$F3 726
8 TraesCS2A01G330600 chr4A 415467320 415468051 731 True 915 915 89.4450 1 726 1 chr4A.!!$R1 725
9 TraesCS2A01G330600 chr7D 6579894 6580620 726 True 907 907 89.2810 1 730 1 chr7D.!!$R1 729
10 TraesCS2A01G330600 chr7A 7666350 7667084 734 True 904 904 89.0840 1 730 1 chr7A.!!$R1 729
11 TraesCS2A01G330600 chr7B 666517516 666518206 690 False 773 773 87.0920 1 692 1 chr7B.!!$F1 691
12 TraesCS2A01G330600 chr3A 658058760 658059417 657 True 360 374 86.5995 31 721 2 chr3A.!!$R1 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 795 0.395312 CACTTAACCAGGGTCACCGT 59.605 55.0 0.0 0.0 43.47 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2479 2718 0.035739 TCGGGTCTACAAAAGTGCCC 59.964 55.0 0.0 0.0 37.8 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 4.414846 AGGCCATCCATGAGTCTATTTTCT 59.585 41.667 5.01 0.00 33.74 2.52
124 125 3.046283 AGTCCTCTGGCCACACATATA 57.954 47.619 0.00 0.00 0.00 0.86
233 234 0.613777 CTAGGTTTGGACGCCTCCTT 59.386 55.000 3.30 0.00 37.48 3.36
454 578 8.946797 TCTAGGAAGAATCATCATCTCATGTA 57.053 34.615 0.00 0.00 0.00 2.29
464 588 7.846101 TCATCATCTCATGTAATAGTGGAGT 57.154 36.000 0.00 0.00 0.00 3.85
465 589 7.664758 TCATCATCTCATGTAATAGTGGAGTG 58.335 38.462 0.00 0.00 0.00 3.51
466 590 7.288621 TCATCATCTCATGTAATAGTGGAGTGT 59.711 37.037 0.00 0.00 0.00 3.55
468 592 7.267857 TCATCTCATGTAATAGTGGAGTGTTG 58.732 38.462 0.00 0.00 0.00 3.33
470 594 6.631016 TCTCATGTAATAGTGGAGTGTTGTC 58.369 40.000 0.00 0.00 0.00 3.18
471 595 6.210584 TCTCATGTAATAGTGGAGTGTTGTCA 59.789 38.462 0.00 0.00 0.00 3.58
472 596 6.946340 TCATGTAATAGTGGAGTGTTGTCAT 58.054 36.000 0.00 0.00 0.00 3.06
475 624 9.161629 CATGTAATAGTGGAGTGTTGTCATTTA 57.838 33.333 0.00 0.00 0.00 1.40
570 728 6.094193 AGCATGTGATATCATCTTCGAAGA 57.906 37.500 28.85 28.85 39.78 2.87
618 777 5.908341 AGCTTGGTTAAATTTTCGGTTTCA 58.092 33.333 0.00 0.00 0.00 2.69
635 794 0.682852 TCACTTAACCAGGGTCACCG 59.317 55.000 0.00 0.00 43.47 4.94
636 795 0.395312 CACTTAACCAGGGTCACCGT 59.605 55.000 0.00 0.00 43.47 4.83
658 817 2.320671 TGGCTGGGCTATCCACATT 58.679 52.632 0.00 0.00 41.46 2.71
738 903 2.632987 AAAACTAGAAGCACCCACGT 57.367 45.000 0.00 0.00 0.00 4.49
739 904 1.878953 AAACTAGAAGCACCCACGTG 58.121 50.000 9.08 9.08 43.35 4.49
740 905 0.756903 AACTAGAAGCACCCACGTGT 59.243 50.000 15.65 0.00 42.39 4.49
741 906 1.624336 ACTAGAAGCACCCACGTGTA 58.376 50.000 15.65 0.00 42.39 2.90
742 907 1.544691 ACTAGAAGCACCCACGTGTAG 59.455 52.381 15.65 8.07 42.39 2.74
743 908 0.892755 TAGAAGCACCCACGTGTAGG 59.107 55.000 15.65 12.05 42.39 3.18
775 940 2.323213 AAAAACACGTGTAGGGCGG 58.677 52.632 23.69 0.00 0.00 6.13
776 941 0.464193 AAAAACACGTGTAGGGCGGT 60.464 50.000 23.69 0.34 0.00 5.68
777 942 1.161563 AAAACACGTGTAGGGCGGTG 61.162 55.000 23.69 0.00 0.00 4.94
778 943 2.314415 AAACACGTGTAGGGCGGTGT 62.314 55.000 23.69 0.00 0.00 4.16
779 944 2.736995 CACGTGTAGGGCGGTGTG 60.737 66.667 7.58 0.00 0.00 3.82
780 945 3.228759 ACGTGTAGGGCGGTGTGT 61.229 61.111 0.00 0.00 0.00 3.72
781 946 1.902918 ACGTGTAGGGCGGTGTGTA 60.903 57.895 0.00 0.00 0.00 2.90
782 947 1.252904 ACGTGTAGGGCGGTGTGTAT 61.253 55.000 0.00 0.00 0.00 2.29
783 948 0.740149 CGTGTAGGGCGGTGTGTATA 59.260 55.000 0.00 0.00 0.00 1.47
784 949 1.338973 CGTGTAGGGCGGTGTGTATAT 59.661 52.381 0.00 0.00 0.00 0.86
785 950 2.750948 GTGTAGGGCGGTGTGTATATG 58.249 52.381 0.00 0.00 0.00 1.78
786 951 1.689813 TGTAGGGCGGTGTGTATATGG 59.310 52.381 0.00 0.00 0.00 2.74
787 952 1.965643 GTAGGGCGGTGTGTATATGGA 59.034 52.381 0.00 0.00 0.00 3.41
788 953 0.756903 AGGGCGGTGTGTATATGGAC 59.243 55.000 0.00 0.00 0.00 4.02
789 954 0.599204 GGGCGGTGTGTATATGGACG 60.599 60.000 0.00 0.00 0.00 4.79
790 955 0.599204 GGCGGTGTGTATATGGACGG 60.599 60.000 0.00 0.00 0.00 4.79
791 956 0.599204 GCGGTGTGTATATGGACGGG 60.599 60.000 0.00 0.00 0.00 5.28
792 957 0.748450 CGGTGTGTATATGGACGGGT 59.252 55.000 0.00 0.00 0.00 5.28
793 958 1.137479 CGGTGTGTATATGGACGGGTT 59.863 52.381 0.00 0.00 0.00 4.11
794 959 2.419021 CGGTGTGTATATGGACGGGTTT 60.419 50.000 0.00 0.00 0.00 3.27
795 960 3.613030 GGTGTGTATATGGACGGGTTTT 58.387 45.455 0.00 0.00 0.00 2.43
796 961 4.011698 GGTGTGTATATGGACGGGTTTTT 58.988 43.478 0.00 0.00 0.00 1.94
823 988 7.655236 AATTCGTTTTGAAATTCATCATGCA 57.345 28.000 0.00 0.00 40.71 3.96
824 989 6.450845 TTCGTTTTGAAATTCATCATGCAC 57.549 33.333 0.00 0.00 32.37 4.57
825 990 4.616381 TCGTTTTGAAATTCATCATGCACG 59.384 37.500 0.00 0.44 32.22 5.34
826 991 4.201513 CGTTTTGAAATTCATCATGCACGG 60.202 41.667 0.00 0.00 0.00 4.94
827 992 3.507103 TTGAAATTCATCATGCACGGG 57.493 42.857 0.00 0.00 0.00 5.28
828 993 2.720915 TGAAATTCATCATGCACGGGA 58.279 42.857 0.00 0.00 0.00 5.14
829 994 2.423185 TGAAATTCATCATGCACGGGAC 59.577 45.455 0.00 0.00 0.00 4.46
830 995 2.127271 AATTCATCATGCACGGGACA 57.873 45.000 0.00 0.00 0.00 4.02
856 1021 0.875474 GTCCCCGTCGTCGAACAAAA 60.875 55.000 2.98 0.00 39.71 2.44
887 1052 4.329545 TGCCGTCTTCTGTGCCCC 62.330 66.667 0.00 0.00 0.00 5.80
961 1126 1.265454 CCACCTACCAGTCACTCCCC 61.265 65.000 0.00 0.00 0.00 4.81
977 1142 4.033776 CCCACGCACCCATCCACT 62.034 66.667 0.00 0.00 0.00 4.00
982 1147 1.742880 CGCACCCATCCACTCACAG 60.743 63.158 0.00 0.00 0.00 3.66
1104 1270 2.745698 CTGCTGTCCTGCTCCACA 59.254 61.111 0.00 0.00 0.00 4.17
1113 1279 1.221840 CTGCTCCACAACCGCCTAT 59.778 57.895 0.00 0.00 0.00 2.57
1219 1385 3.220999 CTCAGCCACGTCGAACCCA 62.221 63.158 0.00 0.00 0.00 4.51
1287 1453 3.140814 GAATGCCTTGGTCCCGCC 61.141 66.667 0.00 0.00 37.90 6.13
1323 1489 1.671328 GCGGAAAAGATCCTTGCCTAC 59.329 52.381 0.00 0.00 46.98 3.18
1353 1519 3.201290 CGCTGAAGATAAGATTGGCTGT 58.799 45.455 0.00 0.00 0.00 4.40
1416 1582 2.039818 AGTCGAGATGCCTCTTCGTA 57.960 50.000 0.00 0.00 37.28 3.43
1567 1733 7.338710 AGTTTAGCTGATCCTTTAGTAATGCA 58.661 34.615 0.00 0.00 0.00 3.96
1669 1842 4.162040 AGAAGAAGGGTAGGCATCATTG 57.838 45.455 0.00 0.00 0.00 2.82
1701 1874 5.589050 AGTTTGGTTTAGTCCTCTGTTTGTC 59.411 40.000 0.00 0.00 0.00 3.18
1702 1875 5.367945 TTGGTTTAGTCCTCTGTTTGTCT 57.632 39.130 0.00 0.00 0.00 3.41
1704 1877 5.123227 TGGTTTAGTCCTCTGTTTGTCTTG 58.877 41.667 0.00 0.00 0.00 3.02
1706 1879 2.938956 AGTCCTCTGTTTGTCTTGGG 57.061 50.000 0.00 0.00 0.00 4.12
1717 1909 1.544724 TGTCTTGGGTTTATGCAGGC 58.455 50.000 0.00 0.00 0.00 4.85
1792 2005 1.630878 CCAGACCTGGGCTACTTTCTT 59.369 52.381 0.00 0.00 46.81 2.52
1796 2009 4.216472 CAGACCTGGGCTACTTTCTTTTTC 59.784 45.833 0.00 0.00 0.00 2.29
1821 2034 6.121776 ACTGGCGTATGGGATGATTTATTA 57.878 37.500 0.00 0.00 0.00 0.98
1822 2035 6.721318 ACTGGCGTATGGGATGATTTATTAT 58.279 36.000 0.00 0.00 0.00 1.28
1823 2036 7.175104 ACTGGCGTATGGGATGATTTATTATT 58.825 34.615 0.00 0.00 0.00 1.40
1828 2041 8.892723 GCGTATGGGATGATTTATTATTGATGA 58.107 33.333 0.00 0.00 0.00 2.92
1841 2054 9.959749 TTTATTATTGATGAAAAATACGGAGGC 57.040 29.630 0.00 0.00 0.00 4.70
1888 2125 5.049129 GGTTCAGAGGATGAGTTTCAACAAG 60.049 44.000 0.00 0.00 39.68 3.16
1918 2155 4.069304 TCCACTTTACAAAGGATTGTCCG 58.931 43.478 6.66 0.00 46.78 4.79
1924 2161 0.591170 CAAAGGATTGTCCGTGCGTT 59.409 50.000 0.00 0.00 42.75 4.84
1962 2199 0.250234 TCTGGTCTGGAGATTTGCCG 59.750 55.000 0.00 0.00 0.00 5.69
1984 2221 3.119495 GGACATCCTTCAAAACATTCGGG 60.119 47.826 0.00 0.00 0.00 5.14
2007 2244 1.439353 CGCGTGGATCCTTCCCAATG 61.439 60.000 14.23 0.00 41.83 2.82
2021 2258 4.871871 TCCCAATGAAATACTTAGGCCA 57.128 40.909 5.01 0.00 0.00 5.36
2030 2267 4.810191 AATACTTAGGCCATCCGATCTC 57.190 45.455 5.01 0.00 37.47 2.75
2031 2268 1.343069 ACTTAGGCCATCCGATCTCC 58.657 55.000 5.01 0.00 37.47 3.71
2039 2276 2.058001 ATCCGATCTCCGTGTGGCA 61.058 57.895 0.00 0.00 36.31 4.92
2068 2305 4.625607 AAGGTTGACTTCCAGTTCCTAG 57.374 45.455 0.00 0.00 32.85 3.02
2081 2318 1.001068 GTTCCTAGAGGATAAGGCGGC 59.999 57.143 0.00 0.00 44.98 6.53
2111 2348 2.037208 CCCTTGGGACGGGCAAAT 59.963 61.111 0.00 0.00 34.32 2.32
2119 2356 1.062525 GACGGGCAAATGATCACGC 59.937 57.895 0.00 0.70 0.00 5.34
2126 2363 0.249155 CAAATGATCACGCCCATGGC 60.249 55.000 6.09 0.58 46.75 4.40
2172 2409 2.924421 CTTTCCTCCCAAGCCATCTAC 58.076 52.381 0.00 0.00 0.00 2.59
2187 2424 4.551388 CCATCTACTTTATCACTCCGCTC 58.449 47.826 0.00 0.00 0.00 5.03
2190 2427 3.693085 TCTACTTTATCACTCCGCTCGTT 59.307 43.478 0.00 0.00 0.00 3.85
2196 2433 2.600769 ACTCCGCTCGTTGTCCCT 60.601 61.111 0.00 0.00 0.00 4.20
2198 2435 2.282958 TCCGCTCGTTGTCCCTCT 60.283 61.111 0.00 0.00 0.00 3.69
2205 2442 1.218316 CGTTGTCCCTCTAGCACCC 59.782 63.158 0.00 0.00 0.00 4.61
2229 2467 9.788960 CCCTCAATAATCTTAACAAGTTTAAGC 57.211 33.333 0.00 0.00 33.29 3.09
2231 2469 8.889849 TCAATAATCTTAACAAGTTTAAGCGC 57.110 30.769 0.00 0.00 33.29 5.92
2238 2476 1.259316 CAAGTTTAAGCGCGCATTCC 58.741 50.000 35.10 16.39 0.00 3.01
2252 2490 2.529632 GCATTCCTTTTTGAGGGGACT 58.470 47.619 0.00 0.00 46.31 3.85
2253 2491 3.697166 GCATTCCTTTTTGAGGGGACTA 58.303 45.455 0.00 0.00 46.31 2.59
2263 2501 1.975680 TGAGGGGACTAACAAGACCAC 59.024 52.381 0.00 0.00 44.43 4.16
2268 2506 1.003233 GGACTAACAAGACCACTGGGG 59.997 57.143 0.00 0.00 44.81 4.96
2276 2514 2.604382 ACCACTGGGGCCAAATGC 60.604 61.111 4.39 0.00 42.05 3.56
2351 2589 2.101582 TGCTAAACACGGGCAAATTTGT 59.898 40.909 19.03 0.00 0.00 2.83
2364 2603 2.986479 CAAATTTGTTGGGCGCTAAGAC 59.014 45.455 7.64 1.91 0.00 3.01
2368 2607 0.108992 TGTTGGGCGCTAAGACTACG 60.109 55.000 7.64 0.00 0.00 3.51
2373 2612 0.108945 GGCGCTAAGACTACGTTGGT 60.109 55.000 7.64 0.00 0.00 3.67
2374 2613 0.989890 GCGCTAAGACTACGTTGGTG 59.010 55.000 0.00 0.00 0.00 4.17
2375 2614 1.668047 GCGCTAAGACTACGTTGGTGT 60.668 52.381 0.00 0.00 0.00 4.16
2376 2615 2.669364 CGCTAAGACTACGTTGGTGTT 58.331 47.619 0.00 0.88 0.00 3.32
2377 2616 2.660236 CGCTAAGACTACGTTGGTGTTC 59.340 50.000 0.00 0.00 0.00 3.18
2378 2617 2.660236 GCTAAGACTACGTTGGTGTTCG 59.340 50.000 0.00 0.00 0.00 3.95
2379 2618 1.494824 AAGACTACGTTGGTGTTCGC 58.505 50.000 0.00 0.00 0.00 4.70
2380 2619 0.386476 AGACTACGTTGGTGTTCGCA 59.614 50.000 0.00 0.00 0.00 5.10
2381 2620 0.505655 GACTACGTTGGTGTTCGCAC 59.494 55.000 0.00 0.00 46.91 5.34
2394 2633 2.241537 CGCACACGAACACGTCAC 59.758 61.111 0.00 0.00 43.93 3.67
2395 2634 2.241537 GCACACGAACACGTCACG 59.758 61.111 0.00 0.00 38.21 4.35
2396 2635 2.510594 GCACACGAACACGTCACGT 61.511 57.895 0.00 0.00 42.36 4.49
2405 2644 2.949106 ACGTCACGTGTACCCTCG 59.051 61.111 16.51 13.30 39.18 4.63
2406 2645 1.597854 ACGTCACGTGTACCCTCGA 60.598 57.895 16.51 0.00 39.18 4.04
2407 2646 1.154338 CGTCACGTGTACCCTCGAC 60.154 63.158 16.51 2.42 0.00 4.20
2408 2647 1.154338 GTCACGTGTACCCTCGACG 60.154 63.158 16.51 5.37 39.03 5.12
2409 2648 2.503375 CACGTGTACCCTCGACGC 60.503 66.667 7.58 0.00 36.56 5.19
2410 2649 3.741476 ACGTGTACCCTCGACGCC 61.741 66.667 2.89 0.00 36.56 5.68
2411 2650 4.824166 CGTGTACCCTCGACGCCG 62.824 72.222 0.00 0.00 37.07 6.46
2412 2651 4.487412 GTGTACCCTCGACGCCGG 62.487 72.222 0.00 0.00 36.24 6.13
2431 2670 3.503363 GGTGATGCACCGCAGCTC 61.503 66.667 5.76 1.79 45.80 4.09
2432 2671 2.743538 GTGATGCACCGCAGCTCA 60.744 61.111 5.76 0.00 45.80 4.26
2433 2672 2.743538 TGATGCACCGCAGCTCAC 60.744 61.111 5.76 0.00 45.80 3.51
2434 2673 3.857854 GATGCACCGCAGCTCACG 61.858 66.667 0.00 0.00 43.65 4.35
2435 2674 4.687215 ATGCACCGCAGCTCACGT 62.687 61.111 5.06 0.00 43.65 4.49
2438 2677 4.700365 CACCGCAGCTCACGTCGA 62.700 66.667 0.00 0.00 0.00 4.20
2439 2678 3.973516 ACCGCAGCTCACGTCGAA 61.974 61.111 0.00 0.00 0.00 3.71
2440 2679 3.175240 CCGCAGCTCACGTCGAAG 61.175 66.667 0.00 0.00 0.00 3.79
2441 2680 3.175240 CGCAGCTCACGTCGAAGG 61.175 66.667 0.00 0.00 0.00 3.46
2442 2681 2.258591 GCAGCTCACGTCGAAGGA 59.741 61.111 0.00 0.00 0.00 3.36
2443 2682 1.803519 GCAGCTCACGTCGAAGGAG 60.804 63.158 0.00 7.74 0.00 3.69
2444 2683 1.876664 CAGCTCACGTCGAAGGAGA 59.123 57.895 16.63 7.92 0.00 3.71
2445 2684 0.455295 CAGCTCACGTCGAAGGAGAC 60.455 60.000 16.63 10.11 37.76 3.36
2446 2685 1.153997 GCTCACGTCGAAGGAGACC 60.154 63.158 16.63 0.00 37.85 3.85
2447 2686 1.507174 CTCACGTCGAAGGAGACCC 59.493 63.158 0.00 0.00 37.85 4.46
2448 2687 2.178521 CACGTCGAAGGAGACCCG 59.821 66.667 0.00 0.00 37.85 5.28
2449 2688 2.033141 ACGTCGAAGGAGACCCGA 59.967 61.111 0.00 0.00 37.85 5.14
2450 2689 2.331132 ACGTCGAAGGAGACCCGAC 61.331 63.158 0.00 0.00 46.67 4.79
2451 2690 2.883621 GTCGAAGGAGACCCGACC 59.116 66.667 0.00 0.00 45.39 4.79
2452 2691 2.749044 TCGAAGGAGACCCGACCG 60.749 66.667 0.00 0.00 37.58 4.79
2453 2692 2.749044 CGAAGGAGACCCGACCGA 60.749 66.667 0.00 0.00 37.58 4.69
2454 2693 2.883621 GAAGGAGACCCGACCGAC 59.116 66.667 0.00 0.00 37.58 4.79
2455 2694 1.975407 GAAGGAGACCCGACCGACA 60.975 63.158 0.00 0.00 37.58 4.35
2456 2695 1.935327 GAAGGAGACCCGACCGACAG 61.935 65.000 0.00 0.00 37.58 3.51
2457 2696 4.131088 GGAGACCCGACCGACAGC 62.131 72.222 0.00 0.00 0.00 4.40
2458 2697 4.477975 GAGACCCGACCGACAGCG 62.478 72.222 0.00 0.00 37.24 5.18
2463 2702 4.246206 CCGACCGACAGCGCGATA 62.246 66.667 12.10 0.00 35.83 2.92
2464 2703 3.017314 CGACCGACAGCGCGATAC 61.017 66.667 12.10 0.00 35.83 2.24
2477 2716 2.566997 CGATACGCAAGACAGTCGG 58.433 57.895 0.00 0.00 43.62 4.79
2478 2717 1.472276 CGATACGCAAGACAGTCGGC 61.472 60.000 9.51 9.51 43.62 5.54
2479 2718 1.472276 GATACGCAAGACAGTCGGCG 61.472 60.000 29.42 29.42 45.58 6.46
2480 2719 2.884087 ATACGCAAGACAGTCGGCGG 62.884 60.000 32.12 20.53 44.84 6.13
2483 2722 4.680237 CAAGACAGTCGGCGGGCA 62.680 66.667 7.21 0.00 0.00 5.36
2484 2723 4.681978 AAGACAGTCGGCGGGCAC 62.682 66.667 7.21 0.00 0.00 5.01
2486 2725 4.681978 GACAGTCGGCGGGCACTT 62.682 66.667 7.21 0.00 0.00 3.16
2487 2726 4.250305 ACAGTCGGCGGGCACTTT 62.250 61.111 7.21 0.00 0.00 2.66
2488 2727 2.978010 CAGTCGGCGGGCACTTTT 60.978 61.111 7.21 0.00 0.00 2.27
2489 2728 2.978010 AGTCGGCGGGCACTTTTG 60.978 61.111 7.21 0.00 0.00 2.44
2490 2729 3.284449 GTCGGCGGGCACTTTTGT 61.284 61.111 7.21 0.00 0.00 2.83
2491 2730 1.962306 GTCGGCGGGCACTTTTGTA 60.962 57.895 7.21 0.00 0.00 2.41
2492 2731 1.669760 TCGGCGGGCACTTTTGTAG 60.670 57.895 7.21 0.00 0.00 2.74
2493 2732 1.669760 CGGCGGGCACTTTTGTAGA 60.670 57.895 0.00 0.00 0.00 2.59
2494 2733 1.873863 GGCGGGCACTTTTGTAGAC 59.126 57.895 0.00 0.00 0.00 2.59
2495 2734 1.583495 GGCGGGCACTTTTGTAGACC 61.583 60.000 0.00 0.00 0.00 3.85
2496 2735 1.583495 GCGGGCACTTTTGTAGACCC 61.583 60.000 0.00 0.00 39.18 4.46
2497 2736 2.551644 GGGCACTTTTGTAGACCCG 58.448 57.895 0.00 0.00 35.21 5.28
2498 2737 0.035739 GGGCACTTTTGTAGACCCGA 59.964 55.000 0.00 0.00 35.21 5.14
2499 2738 1.543871 GGGCACTTTTGTAGACCCGAA 60.544 52.381 0.00 0.00 35.21 4.30
2500 2739 1.804748 GGCACTTTTGTAGACCCGAAG 59.195 52.381 0.00 0.00 0.00 3.79
2501 2740 1.197036 GCACTTTTGTAGACCCGAAGC 59.803 52.381 0.00 0.00 0.00 3.86
2502 2741 1.804748 CACTTTTGTAGACCCGAAGCC 59.195 52.381 0.00 0.00 0.00 4.35
2503 2742 1.271217 ACTTTTGTAGACCCGAAGCCC 60.271 52.381 0.00 0.00 0.00 5.19
2504 2743 0.037160 TTTTGTAGACCCGAAGCCCC 59.963 55.000 0.00 0.00 0.00 5.80
2505 2744 1.128809 TTTGTAGACCCGAAGCCCCA 61.129 55.000 0.00 0.00 0.00 4.96
2506 2745 1.833787 TTGTAGACCCGAAGCCCCAC 61.834 60.000 0.00 0.00 0.00 4.61
2507 2746 1.988406 GTAGACCCGAAGCCCCACT 60.988 63.158 0.00 0.00 0.00 4.00
2508 2747 1.229400 TAGACCCGAAGCCCCACTT 60.229 57.895 0.00 0.00 42.98 3.16
2509 2748 1.550130 TAGACCCGAAGCCCCACTTG 61.550 60.000 0.00 0.00 39.29 3.16
2510 2749 4.660938 ACCCGAAGCCCCACTTGC 62.661 66.667 0.00 0.00 39.29 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.984161 GGGTGACAAACTTTTCATGTGATG 59.016 41.667 0.00 0.00 0.00 3.07
101 102 1.429930 TGTGTGGCCAGAGGACTTTA 58.570 50.000 5.11 0.00 0.00 1.85
124 125 4.082625 TCAGCAATGAAGCGTTGAATGAAT 60.083 37.500 3.71 0.00 40.15 2.57
233 234 4.842531 TGATCTTAAACATCCCTGCTGA 57.157 40.909 0.00 0.00 0.00 4.26
367 370 3.054361 AGTGTTTCAAGACAGACTGGGTT 60.054 43.478 7.51 0.00 0.00 4.11
417 540 8.316497 TGATTCTTCCTAGATTCAGATCTTGT 57.684 34.615 0.00 0.00 42.55 3.16
454 578 8.862325 TTGATAAATGACAACACTCCACTATT 57.138 30.769 0.00 0.00 0.00 1.73
475 624 8.913487 TGTGAGACATGCTTTATATCATTGAT 57.087 30.769 4.28 4.28 0.00 2.57
494 643 6.270000 TCTTGAACTATTCTTCCCTTGTGAGA 59.730 38.462 0.00 0.00 0.00 3.27
570 728 5.376625 TGAGCTTCTTTGTTTGTGTCCTAT 58.623 37.500 0.00 0.00 0.00 2.57
618 777 1.134228 AACGGTGACCCTGGTTAAGT 58.866 50.000 0.00 0.00 0.00 2.24
635 794 0.323360 TGGATAGCCCAGCCACAAAC 60.323 55.000 0.00 0.00 37.95 2.93
636 795 2.082834 TGGATAGCCCAGCCACAAA 58.917 52.632 0.00 0.00 37.95 2.83
658 817 9.974980 GAAGTTCAAATGAATACAAAAAGGGTA 57.025 29.630 0.00 0.00 36.33 3.69
757 922 0.464193 ACCGCCCTACACGTGTTTTT 60.464 50.000 28.55 3.69 0.00 1.94
758 923 1.146707 ACCGCCCTACACGTGTTTT 59.853 52.632 28.55 4.12 0.00 2.43
759 924 1.595929 CACCGCCCTACACGTGTTT 60.596 57.895 28.55 4.99 0.00 2.83
760 925 2.029964 CACCGCCCTACACGTGTT 59.970 61.111 28.55 11.17 0.00 3.32
761 926 3.228759 ACACCGCCCTACACGTGT 61.229 61.111 26.52 26.52 0.00 4.49
762 927 2.144833 TACACACCGCCCTACACGTG 62.145 60.000 15.48 15.48 0.00 4.49
763 928 1.252904 ATACACACCGCCCTACACGT 61.253 55.000 0.00 0.00 0.00 4.49
764 929 0.740149 TATACACACCGCCCTACACG 59.260 55.000 0.00 0.00 0.00 4.49
765 930 2.547218 CCATATACACACCGCCCTACAC 60.547 54.545 0.00 0.00 0.00 2.90
766 931 1.689813 CCATATACACACCGCCCTACA 59.310 52.381 0.00 0.00 0.00 2.74
767 932 1.965643 TCCATATACACACCGCCCTAC 59.034 52.381 0.00 0.00 0.00 3.18
768 933 1.965643 GTCCATATACACACCGCCCTA 59.034 52.381 0.00 0.00 0.00 3.53
769 934 0.756903 GTCCATATACACACCGCCCT 59.243 55.000 0.00 0.00 0.00 5.19
770 935 0.599204 CGTCCATATACACACCGCCC 60.599 60.000 0.00 0.00 0.00 6.13
771 936 0.599204 CCGTCCATATACACACCGCC 60.599 60.000 0.00 0.00 0.00 6.13
772 937 0.599204 CCCGTCCATATACACACCGC 60.599 60.000 0.00 0.00 0.00 5.68
773 938 0.748450 ACCCGTCCATATACACACCG 59.252 55.000 0.00 0.00 0.00 4.94
774 939 2.994186 AACCCGTCCATATACACACC 57.006 50.000 0.00 0.00 0.00 4.16
797 962 9.201127 TGCATGATGAATTTCAAAACGAATTTA 57.799 25.926 2.68 0.00 32.32 1.40
798 963 8.011106 GTGCATGATGAATTTCAAAACGAATTT 58.989 29.630 2.68 0.00 32.32 1.82
799 964 7.512297 GTGCATGATGAATTTCAAAACGAATT 58.488 30.769 2.68 0.00 32.32 2.17
800 965 6.183360 CGTGCATGATGAATTTCAAAACGAAT 60.183 34.615 0.00 0.00 34.44 3.34
801 966 5.116831 CGTGCATGATGAATTTCAAAACGAA 59.883 36.000 0.00 0.00 34.44 3.85
802 967 4.616381 CGTGCATGATGAATTTCAAAACGA 59.384 37.500 0.00 0.00 34.44 3.85
803 968 4.201513 CCGTGCATGATGAATTTCAAAACG 60.202 41.667 7.72 7.34 33.34 3.60
804 969 4.091800 CCCGTGCATGATGAATTTCAAAAC 59.908 41.667 7.72 0.00 0.00 2.43
805 970 4.021632 TCCCGTGCATGATGAATTTCAAAA 60.022 37.500 7.72 0.00 0.00 2.44
806 971 3.509184 TCCCGTGCATGATGAATTTCAAA 59.491 39.130 7.72 0.00 0.00 2.69
807 972 3.087781 TCCCGTGCATGATGAATTTCAA 58.912 40.909 7.72 0.00 0.00 2.69
808 973 2.423185 GTCCCGTGCATGATGAATTTCA 59.577 45.455 7.72 0.75 0.00 2.69
809 974 2.423185 TGTCCCGTGCATGATGAATTTC 59.577 45.455 7.72 0.00 0.00 2.17
810 975 2.445427 TGTCCCGTGCATGATGAATTT 58.555 42.857 7.72 0.00 0.00 1.82
811 976 2.127271 TGTCCCGTGCATGATGAATT 57.873 45.000 7.72 0.00 0.00 2.17
812 977 1.951602 CATGTCCCGTGCATGATGAAT 59.048 47.619 7.72 0.00 44.60 2.57
813 978 1.381522 CATGTCCCGTGCATGATGAA 58.618 50.000 7.72 0.00 44.60 2.57
814 979 0.464193 CCATGTCCCGTGCATGATGA 60.464 55.000 7.72 0.36 44.60 2.92
815 980 2.027325 CCATGTCCCGTGCATGATG 58.973 57.895 7.72 2.86 44.60 3.07
816 981 1.825191 GCCATGTCCCGTGCATGAT 60.825 57.895 7.72 0.00 44.60 2.45
817 982 2.438254 GCCATGTCCCGTGCATGA 60.438 61.111 7.72 0.00 44.60 3.07
818 983 3.520862 GGCCATGTCCCGTGCATG 61.521 66.667 0.00 0.00 42.29 4.06
819 984 4.820744 GGGCCATGTCCCGTGCAT 62.821 66.667 4.39 0.00 36.38 3.96
840 1005 1.199859 CGTTTTGTTCGACGACGGG 59.800 57.895 7.55 0.00 41.53 5.28
856 1021 2.264794 GGCAGACGGGATTGTCGT 59.735 61.111 0.00 0.00 43.70 4.34
887 1052 3.522731 CAGCGGAGAGGACGGAGG 61.523 72.222 0.00 0.00 0.00 4.30
915 1080 6.325286 AGCTATTCGAGGAAGAAACTTATCCT 59.675 38.462 0.00 0.00 46.14 3.24
961 1126 2.436646 GAGTGGATGGGTGCGTGG 60.437 66.667 0.00 0.00 0.00 4.94
977 1142 1.398958 GCCCCTTTTTGGTGCTGTGA 61.399 55.000 0.00 0.00 0.00 3.58
982 1147 4.680237 GCCGCCCCTTTTTGGTGC 62.680 66.667 0.00 0.00 31.87 5.01
1104 1270 3.489513 GGGGGCTCATAGGCGGTT 61.490 66.667 0.00 0.00 42.43 4.44
1219 1385 0.538584 TCCTTGATGAGCTGCACGAT 59.461 50.000 1.02 0.00 0.00 3.73
1323 1489 0.249447 TATCTTCAGCGCGTGGATGG 60.249 55.000 8.43 2.53 31.40 3.51
1353 1519 0.180171 CCATGATACCGTCAAGCCCA 59.820 55.000 0.00 0.00 40.97 5.36
1646 1819 3.914426 TGATGCCTACCCTTCTTCTTC 57.086 47.619 0.00 0.00 0.00 2.87
1648 1821 3.117738 CCAATGATGCCTACCCTTCTTCT 60.118 47.826 0.00 0.00 0.00 2.85
1649 1822 3.217626 CCAATGATGCCTACCCTTCTTC 58.782 50.000 0.00 0.00 0.00 2.87
1650 1823 2.582636 ACCAATGATGCCTACCCTTCTT 59.417 45.455 0.00 0.00 0.00 2.52
1669 1842 6.051179 AGGACTAAACCAAACTAGATCACC 57.949 41.667 0.00 0.00 0.00 4.02
1701 1874 0.887933 AACGCCTGCATAAACCCAAG 59.112 50.000 0.00 0.00 0.00 3.61
1702 1875 1.333177 AAACGCCTGCATAAACCCAA 58.667 45.000 0.00 0.00 0.00 4.12
1704 1877 2.685897 TCATAAACGCCTGCATAAACCC 59.314 45.455 0.00 0.00 0.00 4.11
1706 1879 4.342772 CAGTCATAAACGCCTGCATAAAC 58.657 43.478 0.00 0.00 0.00 2.01
1717 1909 1.006832 CTTCCGGCCAGTCATAAACG 58.993 55.000 2.24 0.00 0.00 3.60
1742 1934 1.197721 CAAAGTGAACCCGACATGCTC 59.802 52.381 0.00 0.00 0.00 4.26
1792 2005 0.609151 TCCCATACGCCAGTCGAAAA 59.391 50.000 0.00 0.00 41.67 2.29
1796 2009 0.318441 ATCATCCCATACGCCAGTCG 59.682 55.000 0.00 0.00 45.38 4.18
1821 2034 3.315191 CGGCCTCCGTATTTTTCATCAAT 59.685 43.478 0.00 0.00 42.73 2.57
1822 2035 2.680841 CGGCCTCCGTATTTTTCATCAA 59.319 45.455 0.00 0.00 42.73 2.57
1823 2036 2.285083 CGGCCTCCGTATTTTTCATCA 58.715 47.619 0.00 0.00 42.73 3.07
1841 2054 0.940126 GGCATCACAGTATTCAGCGG 59.060 55.000 0.00 0.00 0.00 5.52
1876 2113 4.761739 TGGATGGATGACTTGTTGAAACTC 59.238 41.667 0.00 0.00 0.00 3.01
1888 2125 5.253330 TCCTTTGTAAAGTGGATGGATGAC 58.747 41.667 3.90 0.00 34.20 3.06
1918 2155 5.484173 TGATTTCATCCATAAGAACGCAC 57.516 39.130 0.00 0.00 0.00 5.34
1924 2161 8.277197 AGACCAGATTTGATTTCATCCATAAGA 58.723 33.333 0.00 0.00 0.00 2.10
1947 2184 0.036388 TGTCCGGCAAATCTCCAGAC 60.036 55.000 0.00 0.00 32.88 3.51
1962 2199 3.119495 CCCGAATGTTTTGAAGGATGTCC 60.119 47.826 0.00 0.00 0.00 4.02
2007 2244 5.153950 AGATCGGATGGCCTAAGTATTTC 57.846 43.478 3.32 0.00 0.00 2.17
2021 2258 2.021068 CTGCCACACGGAGATCGGAT 62.021 60.000 0.00 0.00 44.45 4.18
2030 2267 0.318107 CTTTTTGAGCTGCCACACGG 60.318 55.000 0.00 0.00 0.00 4.94
2031 2268 0.318107 CCTTTTTGAGCTGCCACACG 60.318 55.000 0.00 0.00 0.00 4.49
2039 2276 3.631250 TGGAAGTCAACCTTTTTGAGCT 58.369 40.909 0.00 0.00 32.03 4.09
2068 2305 3.750373 TTGCCGCCGCCTTATCCTC 62.750 63.158 0.00 0.00 0.00 3.71
2081 2318 1.659794 CAAGGGACCAACTTTGCCG 59.340 57.895 0.00 0.00 0.00 5.69
2135 2372 0.468226 AAGCACCGACTTGACCAAGA 59.532 50.000 15.84 0.00 40.79 3.02
2145 2382 0.955919 CTTGGGAGGAAAGCACCGAC 60.956 60.000 0.00 0.00 34.73 4.79
2172 2409 2.599082 GACAACGAGCGGAGTGATAAAG 59.401 50.000 0.00 0.00 0.00 1.85
2187 2424 1.218316 GGGTGCTAGAGGGACAACG 59.782 63.158 0.00 0.00 38.05 4.10
2190 2427 0.116342 TTGAGGGTGCTAGAGGGACA 59.884 55.000 0.00 0.00 38.05 4.02
2196 2433 7.432148 TGTTAAGATTATTGAGGGTGCTAGA 57.568 36.000 0.00 0.00 0.00 2.43
2198 2435 7.630082 ACTTGTTAAGATTATTGAGGGTGCTA 58.370 34.615 0.00 0.00 0.00 3.49
2205 2442 9.000018 GCGCTTAAACTTGTTAAGATTATTGAG 58.000 33.333 0.00 0.00 34.74 3.02
2238 2476 4.519350 GGTCTTGTTAGTCCCCTCAAAAAG 59.481 45.833 0.00 0.00 0.00 2.27
2252 2490 1.063070 TGGCCCCAGTGGTCTTGTTA 61.063 55.000 8.74 0.00 40.46 2.41
2253 2491 1.943730 TTGGCCCCAGTGGTCTTGTT 61.944 55.000 8.74 0.00 40.46 2.83
2263 2501 1.891722 GACCTTGCATTTGGCCCCAG 61.892 60.000 0.00 0.00 43.89 4.45
2268 2506 2.078392 CCAATTGACCTTGCATTTGGC 58.922 47.619 7.12 0.00 40.36 4.52
2276 2514 1.271379 ACGGAGTCCCAATTGACCTTG 60.271 52.381 7.12 0.00 29.74 3.61
2351 2589 0.604578 AACGTAGTCTTAGCGCCCAA 59.395 50.000 2.29 0.00 45.00 4.12
2364 2603 0.231279 GTGTGCGAACACCAACGTAG 59.769 55.000 16.40 0.00 46.86 3.51
2368 2607 3.401095 TCGTGTGCGAACACCAAC 58.599 55.556 21.10 0.00 46.86 3.77
2388 2627 1.597854 TCGAGGGTACACGTGACGT 60.598 57.895 25.01 4.10 42.36 4.34
2389 2628 1.154338 GTCGAGGGTACACGTGACG 60.154 63.158 25.01 16.05 0.00 4.35
2390 2629 1.154338 CGTCGAGGGTACACGTGAC 60.154 63.158 25.01 15.43 0.00 3.67
2391 2630 2.969806 GCGTCGAGGGTACACGTGA 61.970 63.158 25.01 2.68 35.91 4.35
2392 2631 2.503375 GCGTCGAGGGTACACGTG 60.503 66.667 15.48 15.48 35.91 4.49
2393 2632 3.741476 GGCGTCGAGGGTACACGT 61.741 66.667 7.31 0.00 35.91 4.49
2394 2633 4.824166 CGGCGTCGAGGGTACACG 62.824 72.222 1.44 0.00 39.00 4.49
2395 2634 4.487412 CCGGCGTCGAGGGTACAC 62.487 72.222 12.93 0.00 39.00 2.90
2415 2654 2.743538 TGAGCTGCGGTGCATCAC 60.744 61.111 0.00 0.00 38.13 3.06
2416 2655 2.743538 GTGAGCTGCGGTGCATCA 60.744 61.111 0.00 0.00 38.13 3.07
2417 2656 3.857854 CGTGAGCTGCGGTGCATC 61.858 66.667 0.00 0.00 38.13 3.91
2418 2657 4.687215 ACGTGAGCTGCGGTGCAT 62.687 61.111 11.28 0.00 38.13 3.96
2421 2660 4.700365 TCGACGTGAGCTGCGGTG 62.700 66.667 11.28 4.12 0.00 4.94
2422 2661 3.898627 CTTCGACGTGAGCTGCGGT 62.899 63.158 11.28 0.00 0.00 5.68
2423 2662 3.175240 CTTCGACGTGAGCTGCGG 61.175 66.667 11.28 0.00 0.00 5.69
2424 2663 3.175240 CCTTCGACGTGAGCTGCG 61.175 66.667 0.00 0.00 0.00 5.18
2425 2664 1.803519 CTCCTTCGACGTGAGCTGC 60.804 63.158 0.00 0.00 0.00 5.25
2426 2665 0.455295 GTCTCCTTCGACGTGAGCTG 60.455 60.000 0.00 0.00 0.00 4.24
2427 2666 1.587933 GGTCTCCTTCGACGTGAGCT 61.588 60.000 0.00 0.00 34.75 4.09
2428 2667 1.153997 GGTCTCCTTCGACGTGAGC 60.154 63.158 0.00 0.00 34.75 4.26
2429 2668 1.507174 GGGTCTCCTTCGACGTGAG 59.493 63.158 0.00 0.00 34.75 3.51
2430 2669 2.330372 CGGGTCTCCTTCGACGTGA 61.330 63.158 0.00 0.00 34.75 4.35
2431 2670 2.178521 CGGGTCTCCTTCGACGTG 59.821 66.667 0.00 0.00 34.75 4.49
2432 2671 2.033141 TCGGGTCTCCTTCGACGT 59.967 61.111 0.00 0.00 34.75 4.34
2433 2672 2.484203 GTCGGGTCTCCTTCGACG 59.516 66.667 0.00 0.00 42.60 5.12
2435 2674 2.749044 CGGTCGGGTCTCCTTCGA 60.749 66.667 0.00 0.00 0.00 3.71
2436 2675 2.749044 TCGGTCGGGTCTCCTTCG 60.749 66.667 0.00 0.00 0.00 3.79
2437 2676 1.935327 CTGTCGGTCGGGTCTCCTTC 61.935 65.000 0.00 0.00 0.00 3.46
2438 2677 1.977544 CTGTCGGTCGGGTCTCCTT 60.978 63.158 0.00 0.00 0.00 3.36
2439 2678 2.361357 CTGTCGGTCGGGTCTCCT 60.361 66.667 0.00 0.00 0.00 3.69
2440 2679 4.131088 GCTGTCGGTCGGGTCTCC 62.131 72.222 0.00 0.00 0.00 3.71
2441 2680 4.477975 CGCTGTCGGTCGGGTCTC 62.478 72.222 0.00 0.00 0.00 3.36
2446 2685 4.246206 TATCGCGCTGTCGGTCGG 62.246 66.667 5.56 0.00 35.95 4.79
2447 2686 3.017314 GTATCGCGCTGTCGGTCG 61.017 66.667 5.56 0.00 35.95 4.79
2448 2687 3.017314 CGTATCGCGCTGTCGGTC 61.017 66.667 5.56 0.00 35.95 4.79
2459 2698 1.472276 GCCGACTGTCTTGCGTATCG 61.472 60.000 6.21 0.00 0.00 2.92
2460 2699 1.472276 CGCCGACTGTCTTGCGTATC 61.472 60.000 24.23 0.00 41.95 2.24
2461 2700 1.516386 CGCCGACTGTCTTGCGTAT 60.516 57.895 24.23 0.00 41.95 3.06
2462 2701 2.126618 CGCCGACTGTCTTGCGTA 60.127 61.111 24.23 0.00 41.95 4.42
2466 2705 4.680237 TGCCCGCCGACTGTCTTG 62.680 66.667 6.21 0.00 0.00 3.02
2467 2706 4.681978 GTGCCCGCCGACTGTCTT 62.682 66.667 6.21 0.00 0.00 3.01
2469 2708 4.681978 AAGTGCCCGCCGACTGTC 62.682 66.667 0.00 0.00 0.00 3.51
2470 2709 3.767630 AAAAGTGCCCGCCGACTGT 62.768 57.895 0.00 0.00 0.00 3.55
2471 2710 2.978010 AAAAGTGCCCGCCGACTG 60.978 61.111 0.00 0.00 0.00 3.51
2472 2711 2.386064 TACAAAAGTGCCCGCCGACT 62.386 55.000 0.00 0.00 0.00 4.18
2473 2712 1.908066 CTACAAAAGTGCCCGCCGAC 61.908 60.000 0.00 0.00 0.00 4.79
2474 2713 1.669760 CTACAAAAGTGCCCGCCGA 60.670 57.895 0.00 0.00 0.00 5.54
2475 2714 1.669760 TCTACAAAAGTGCCCGCCG 60.670 57.895 0.00 0.00 0.00 6.46
2476 2715 1.583495 GGTCTACAAAAGTGCCCGCC 61.583 60.000 0.00 0.00 0.00 6.13
2477 2716 1.583495 GGGTCTACAAAAGTGCCCGC 61.583 60.000 0.00 0.00 33.87 6.13
2478 2717 2.551644 GGGTCTACAAAAGTGCCCG 58.448 57.895 0.00 0.00 33.87 6.13
2479 2718 0.035739 TCGGGTCTACAAAAGTGCCC 59.964 55.000 0.00 0.00 37.80 5.36
2480 2719 1.804748 CTTCGGGTCTACAAAAGTGCC 59.195 52.381 0.00 0.00 0.00 5.01
2481 2720 1.197036 GCTTCGGGTCTACAAAAGTGC 59.803 52.381 0.00 0.00 0.00 4.40
2482 2721 1.804748 GGCTTCGGGTCTACAAAAGTG 59.195 52.381 0.00 0.00 0.00 3.16
2483 2722 1.271217 GGGCTTCGGGTCTACAAAAGT 60.271 52.381 0.00 0.00 0.00 2.66
2484 2723 1.450025 GGGCTTCGGGTCTACAAAAG 58.550 55.000 0.00 0.00 0.00 2.27
2485 2724 0.037160 GGGGCTTCGGGTCTACAAAA 59.963 55.000 0.00 0.00 0.00 2.44
2486 2725 1.128809 TGGGGCTTCGGGTCTACAAA 61.129 55.000 0.00 0.00 0.00 2.83
2487 2726 1.536907 TGGGGCTTCGGGTCTACAA 60.537 57.895 0.00 0.00 0.00 2.41
2488 2727 2.120940 TGGGGCTTCGGGTCTACA 59.879 61.111 0.00 0.00 0.00 2.74
2489 2728 1.551019 AAGTGGGGCTTCGGGTCTAC 61.551 60.000 0.00 0.00 30.06 2.59
2490 2729 1.229400 AAGTGGGGCTTCGGGTCTA 60.229 57.895 0.00 0.00 30.06 2.59
2491 2730 2.529389 AAGTGGGGCTTCGGGTCT 60.529 61.111 0.00 0.00 30.06 3.85
2492 2731 2.359975 CAAGTGGGGCTTCGGGTC 60.360 66.667 0.00 0.00 34.69 4.46
2493 2732 4.660938 GCAAGTGGGGCTTCGGGT 62.661 66.667 0.00 0.00 34.69 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.