Multiple sequence alignment - TraesCS2A01G330000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G330000 chr2A 100.000 5091 0 0 1 5091 562514213 562509123 0.000000e+00 9402.0
1 TraesCS2A01G330000 chr2A 78.311 1125 119 58 1039 2112 744244913 744245963 1.210000e-170 610.0
2 TraesCS2A01G330000 chr2B 91.372 2944 151 49 568 3467 503448489 503451373 0.000000e+00 3934.0
3 TraesCS2A01G330000 chr2B 96.616 1566 49 3 3526 5090 503451378 503452940 0.000000e+00 2595.0
4 TraesCS2A01G330000 chr2B 91.532 555 27 12 1 545 503447887 503448431 0.000000e+00 747.0
5 TraesCS2A01G330000 chr2B 83.740 615 61 19 965 1562 503341599 503341007 3.470000e-151 545.0
6 TraesCS2A01G330000 chr2B 97.917 48 1 0 4518 4565 503452320 503452367 3.270000e-12 84.2
7 TraesCS2A01G330000 chr2D 92.206 2797 128 43 734 3499 426429597 426432334 0.000000e+00 3875.0
8 TraesCS2A01G330000 chr2D 96.885 1509 40 3 3583 5091 426432335 426433836 0.000000e+00 2519.0
9 TraesCS2A01G330000 chr2D 92.532 549 30 8 1 545 426428912 426429453 0.000000e+00 776.0
10 TraesCS2A01G330000 chr2D 77.729 1145 130 59 1791 2895 611771629 611772688 2.040000e-163 586.0
11 TraesCS2A01G330000 chr2D 100.000 48 0 0 4518 4565 426433215 426433262 7.020000e-14 89.8
12 TraesCS2A01G330000 chr3A 88.660 485 32 14 1 476 227067111 227067581 2.060000e-158 569.0
13 TraesCS2A01G330000 chr1D 88.454 485 33 13 1 476 15183712 15184182 9.570000e-157 564.0
14 TraesCS2A01G330000 chr1B 90.000 430 21 11 56 476 6412225 6412641 2.090000e-148 536.0
15 TraesCS2A01G330000 chr4B 80.769 546 90 6 4545 5089 1766819 1767350 3.670000e-111 412.0
16 TraesCS2A01G330000 chr5B 80.965 373 66 4 4720 5091 88977114 88977482 1.790000e-74 291.0
17 TraesCS2A01G330000 chr3B 79.459 370 63 7 4720 5087 823719939 823719581 3.040000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G330000 chr2A 562509123 562514213 5090 True 9402.00 9402 100.00000 1 5091 1 chr2A.!!$R1 5090
1 TraesCS2A01G330000 chr2A 744244913 744245963 1050 False 610.00 610 78.31100 1039 2112 1 chr2A.!!$F1 1073
2 TraesCS2A01G330000 chr2B 503447887 503452940 5053 False 1840.05 3934 94.35925 1 5090 4 chr2B.!!$F1 5089
3 TraesCS2A01G330000 chr2B 503341007 503341599 592 True 545.00 545 83.74000 965 1562 1 chr2B.!!$R1 597
4 TraesCS2A01G330000 chr2D 426428912 426433836 4924 False 1814.95 3875 95.40575 1 5091 4 chr2D.!!$F2 5090
5 TraesCS2A01G330000 chr2D 611771629 611772688 1059 False 586.00 586 77.72900 1791 2895 1 chr2D.!!$F1 1104
6 TraesCS2A01G330000 chr4B 1766819 1767350 531 False 412.00 412 80.76900 4545 5089 1 chr4B.!!$F1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 964 0.103026 CCGCAGCTGACATGCTAGTA 59.897 55.0 20.43 0.0 41.98 1.82 F
990 1057 0.316689 CGTCCAACCGCAGTGAAAAC 60.317 55.0 0.00 0.0 0.00 2.43 F
2396 2607 0.176680 ACTGCAAGAGGCTGGTATCG 59.823 55.0 0.00 0.0 44.93 2.92 F
3006 3226 0.109781 GAAAGCGCTGGCGAAAATCA 60.110 50.0 12.58 0.0 46.35 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 2366 0.508641 CGGAGAAGCTGTTGTTGTCG 59.491 55.0 0.00 0.0 0.00 4.35 R
2948 3168 0.674581 TGAATGTCAGCTTGCCCGAG 60.675 55.0 0.00 0.0 0.00 4.63 R
3938 4163 0.035439 GGTGGTGTCCGTGGATGAAT 60.035 55.0 0.00 0.0 0.00 2.57 R
4459 4685 0.250467 GGCACTGAAGAACTGGCAGA 60.250 55.0 23.66 0.0 33.94 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 149 1.563879 TGTCCATTGATCCGGGATGTT 59.436 47.619 15.70 0.00 32.43 2.71
148 152 3.753272 GTCCATTGATCCGGGATGTTATG 59.247 47.826 15.70 13.55 32.43 1.90
149 153 3.394274 TCCATTGATCCGGGATGTTATGT 59.606 43.478 15.70 0.00 0.00 2.29
150 154 4.595350 TCCATTGATCCGGGATGTTATGTA 59.405 41.667 15.70 0.00 0.00 2.29
189 193 8.893727 GCAGTGTACATATTTTATCCAAAGAGT 58.106 33.333 0.00 0.00 0.00 3.24
221 225 0.850100 TCTTGGAACCAGGGAAAGCA 59.150 50.000 3.27 0.00 0.00 3.91
233 237 0.676782 GGAAAGCACACGGGTAGCAT 60.677 55.000 13.42 0.24 0.00 3.79
234 238 0.447801 GAAAGCACACGGGTAGCATG 59.552 55.000 13.42 0.00 0.00 4.06
246 250 2.648059 GGTAGCATGAGTCCAAGCATT 58.352 47.619 0.00 0.00 39.29 3.56
255 259 4.713553 TGAGTCCAAGCATTTCTGTTGTA 58.286 39.130 0.00 0.00 0.00 2.41
287 291 3.191162 GGCAACAAACATATCTGCTGTCA 59.809 43.478 0.00 0.00 33.49 3.58
318 322 7.651704 GTCTTTCAGCTGAGTATTATTCTCTCC 59.348 40.741 17.43 0.00 33.59 3.71
319 323 7.563188 TCTTTCAGCTGAGTATTATTCTCTCCT 59.437 37.037 17.43 0.00 33.59 3.69
328 332 7.829211 TGAGTATTATTCTCTCCTTTGTTTGGG 59.171 37.037 0.87 0.00 33.59 4.12
386 392 9.404848 CATGATGCTGACCATTAAGGATTATAT 57.595 33.333 0.00 0.00 41.22 0.86
444 453 7.601856 TGTTTCTGCCCAATAATTGAAGTTAG 58.398 34.615 0.00 0.00 0.00 2.34
450 459 5.743872 GCCCAATAATTGAAGTTAGCTTTCG 59.256 40.000 0.00 0.00 34.61 3.46
485 495 9.868277 ATGATTGAAGTTAACTTTGTTTGACAA 57.132 25.926 21.40 17.59 36.11 3.18
535 545 3.902515 CCTATGACGGAGGCAGATG 57.097 57.895 0.00 0.00 0.00 2.90
536 546 1.332195 CCTATGACGGAGGCAGATGA 58.668 55.000 0.00 0.00 0.00 2.92
537 547 1.898472 CCTATGACGGAGGCAGATGAT 59.102 52.381 0.00 0.00 0.00 2.45
545 555 3.320541 ACGGAGGCAGATGATTCTTAGAG 59.679 47.826 0.00 0.00 0.00 2.43
546 556 3.320541 CGGAGGCAGATGATTCTTAGAGT 59.679 47.826 0.00 0.00 0.00 3.24
547 557 4.630111 GGAGGCAGATGATTCTTAGAGTG 58.370 47.826 0.00 0.00 0.00 3.51
548 558 4.502950 GGAGGCAGATGATTCTTAGAGTGG 60.503 50.000 0.00 0.00 0.00 4.00
549 559 4.036518 AGGCAGATGATTCTTAGAGTGGT 58.963 43.478 0.00 0.00 0.00 4.16
550 560 4.472833 AGGCAGATGATTCTTAGAGTGGTT 59.527 41.667 0.00 0.00 0.00 3.67
551 561 5.663106 AGGCAGATGATTCTTAGAGTGGTTA 59.337 40.000 0.00 0.00 0.00 2.85
552 562 5.988561 GGCAGATGATTCTTAGAGTGGTTAG 59.011 44.000 0.00 0.00 0.00 2.34
553 563 6.407525 GGCAGATGATTCTTAGAGTGGTTAGT 60.408 42.308 0.00 0.00 0.00 2.24
554 564 7.044798 GCAGATGATTCTTAGAGTGGTTAGTT 58.955 38.462 0.00 0.00 0.00 2.24
556 566 9.522804 CAGATGATTCTTAGAGTGGTTAGTTAC 57.477 37.037 0.00 0.00 0.00 2.50
557 567 9.256228 AGATGATTCTTAGAGTGGTTAGTTACA 57.744 33.333 0.00 0.00 0.00 2.41
560 570 8.304596 TGATTCTTAGAGTGGTTAGTTACACAG 58.695 37.037 0.00 0.00 39.99 3.66
561 571 6.585695 TCTTAGAGTGGTTAGTTACACAGG 57.414 41.667 0.00 0.00 39.99 4.00
562 572 6.073314 TCTTAGAGTGGTTAGTTACACAGGT 58.927 40.000 0.00 0.00 39.99 4.00
563 573 4.868314 AGAGTGGTTAGTTACACAGGTC 57.132 45.455 0.00 0.00 39.99 3.85
564 574 3.255149 AGAGTGGTTAGTTACACAGGTCG 59.745 47.826 0.00 0.00 39.99 4.79
565 575 2.298163 AGTGGTTAGTTACACAGGTCGG 59.702 50.000 0.00 0.00 39.99 4.79
566 576 2.297033 GTGGTTAGTTACACAGGTCGGA 59.703 50.000 0.00 0.00 37.54 4.55
593 638 2.354203 GCTCCAGTCGAATCCTGACTTT 60.354 50.000 3.24 0.00 44.00 2.66
594 639 3.516615 CTCCAGTCGAATCCTGACTTTC 58.483 50.000 3.24 0.00 44.00 2.62
595 640 2.094700 TCCAGTCGAATCCTGACTTTCG 60.095 50.000 3.24 0.00 44.00 3.46
617 662 3.886123 CCCTAGGCAAATAATATCCCGG 58.114 50.000 2.05 0.00 0.00 5.73
618 663 3.371595 CCCTAGGCAAATAATATCCCGGG 60.372 52.174 16.85 16.85 0.00 5.73
619 664 3.521937 CCTAGGCAAATAATATCCCGGGA 59.478 47.826 29.18 29.18 0.00 5.14
620 665 4.018779 CCTAGGCAAATAATATCCCGGGAA 60.019 45.833 30.84 17.56 0.00 3.97
621 666 4.034285 AGGCAAATAATATCCCGGGAAG 57.966 45.455 30.84 10.89 0.00 3.46
622 667 3.089284 GGCAAATAATATCCCGGGAAGG 58.911 50.000 30.84 11.63 40.63 3.46
625 670 4.506802 GCAAATAATATCCCGGGAAGGAGT 60.507 45.833 30.84 17.54 45.00 3.85
643 688 1.360852 AGTGAGATCAGACTCCAGGGT 59.639 52.381 0.00 0.00 36.22 4.34
644 689 1.754226 GTGAGATCAGACTCCAGGGTC 59.246 57.143 0.00 0.00 36.22 4.46
646 691 0.712979 AGATCAGACTCCAGGGTCCA 59.287 55.000 0.00 0.00 36.95 4.02
647 692 1.293458 AGATCAGACTCCAGGGTCCAT 59.707 52.381 0.00 0.00 36.95 3.41
650 695 1.909302 TCAGACTCCAGGGTCCATTTC 59.091 52.381 0.00 0.00 36.95 2.17
651 696 1.912043 CAGACTCCAGGGTCCATTTCT 59.088 52.381 0.00 0.00 36.95 2.52
652 697 3.107601 CAGACTCCAGGGTCCATTTCTA 58.892 50.000 0.00 0.00 36.95 2.10
674 719 0.668535 TATCCGCATCACTCGAGTGG 59.331 55.000 37.82 26.41 45.65 4.00
679 724 1.639298 GCATCACTCGAGTGGGTTGC 61.639 60.000 37.82 34.83 45.65 4.17
680 725 1.021390 CATCACTCGAGTGGGTTGCC 61.021 60.000 37.82 0.00 45.65 4.52
681 726 1.194781 ATCACTCGAGTGGGTTGCCT 61.195 55.000 37.82 15.92 45.65 4.75
682 727 1.669115 CACTCGAGTGGGTTGCCTG 60.669 63.158 33.36 8.50 42.10 4.85
683 728 2.743928 CTCGAGTGGGTTGCCTGC 60.744 66.667 3.62 0.00 0.00 4.85
684 729 4.329545 TCGAGTGGGTTGCCTGCC 62.330 66.667 0.00 0.00 0.00 4.85
685 730 4.335647 CGAGTGGGTTGCCTGCCT 62.336 66.667 0.00 0.00 0.00 4.75
686 731 2.954684 CGAGTGGGTTGCCTGCCTA 61.955 63.158 0.00 0.00 0.00 3.93
687 732 1.078143 GAGTGGGTTGCCTGCCTAG 60.078 63.158 0.00 0.00 0.00 3.02
703 748 1.135083 CCTAGACGGCAACTACCAGTG 60.135 57.143 0.00 0.00 0.00 3.66
705 750 1.004918 GACGGCAACTACCAGTGCT 60.005 57.895 0.00 0.00 0.00 4.40
706 751 1.291877 GACGGCAACTACCAGTGCTG 61.292 60.000 3.00 3.00 35.88 4.41
707 752 1.301716 CGGCAACTACCAGTGCTGT 60.302 57.895 0.00 0.00 29.84 4.40
708 753 1.568612 CGGCAACTACCAGTGCTGTG 61.569 60.000 0.00 0.00 29.84 3.66
709 754 1.576421 GCAACTACCAGTGCTGTGC 59.424 57.895 0.00 0.00 0.00 4.57
710 755 1.856265 GCAACTACCAGTGCTGTGCC 61.856 60.000 0.00 0.00 0.00 5.01
711 756 0.250467 CAACTACCAGTGCTGTGCCT 60.250 55.000 0.00 0.00 0.00 4.75
712 757 0.250467 AACTACCAGTGCTGTGCCTG 60.250 55.000 0.00 0.00 0.00 4.85
713 758 2.032528 TACCAGTGCTGTGCCTGC 59.967 61.111 0.00 0.00 0.00 4.85
714 759 3.881952 TACCAGTGCTGTGCCTGCG 62.882 63.158 0.00 0.00 0.00 5.18
741 786 1.003759 CTCTCGTCCCGTGATAACTCG 60.004 57.143 0.00 0.00 0.00 4.18
758 803 3.598562 GCTCGTCACATCGCGTCG 61.599 66.667 5.77 0.08 0.00 5.12
759 804 3.598562 CTCGTCACATCGCGTCGC 61.599 66.667 7.29 7.29 0.00 5.19
830 875 1.281656 CCGTCCAAAAGTTCCACGC 59.718 57.895 0.00 0.00 0.00 5.34
838 883 3.231160 CAAAAGTTCCACGCCGAATAAC 58.769 45.455 0.00 0.00 0.00 1.89
839 884 1.073177 AAGTTCCACGCCGAATAACG 58.927 50.000 0.00 0.00 42.18 3.18
840 885 1.059838 GTTCCACGCCGAATAACGC 59.940 57.895 0.00 0.00 41.07 4.84
841 886 2.446253 TTCCACGCCGAATAACGCG 61.446 57.895 3.53 3.53 43.06 6.01
842 887 2.815825 TTCCACGCCGAATAACGCGA 62.816 55.000 15.93 0.00 41.25 5.87
848 894 1.462869 CGCCGAATAACGCGAAAAAGT 60.463 47.619 15.93 0.00 41.25 2.66
915 961 2.187685 CCCGCAGCTGACATGCTA 59.812 61.111 20.43 0.00 41.98 3.49
916 962 1.886313 CCCGCAGCTGACATGCTAG 60.886 63.158 20.43 0.00 41.98 3.42
917 963 1.153489 CCGCAGCTGACATGCTAGT 60.153 57.895 20.43 0.00 41.98 2.57
918 964 0.103026 CCGCAGCTGACATGCTAGTA 59.897 55.000 20.43 0.00 41.98 1.82
919 965 1.485397 CGCAGCTGACATGCTAGTAG 58.515 55.000 20.43 0.00 41.98 2.57
920 966 1.216122 GCAGCTGACATGCTAGTAGC 58.784 55.000 20.43 15.56 41.98 3.58
921 967 1.863267 CAGCTGACATGCTAGTAGCC 58.137 55.000 19.41 4.52 41.51 3.93
922 968 1.411977 CAGCTGACATGCTAGTAGCCT 59.588 52.381 19.41 6.92 41.51 4.58
972 1038 1.435515 GTGCTGCTCCTCTAGTCCG 59.564 63.158 0.00 0.00 0.00 4.79
990 1057 0.316689 CGTCCAACCGCAGTGAAAAC 60.317 55.000 0.00 0.00 0.00 2.43
1013 1080 3.211564 CTGCCCCACAAAACAGCCG 62.212 63.158 0.00 0.00 0.00 5.52
1028 1095 3.136123 CCGGCCATTGACCAGCAG 61.136 66.667 2.24 0.00 0.00 4.24
1040 1107 2.739671 CAGCAGCAGCACGCACTA 60.740 61.111 3.17 0.00 46.13 2.74
1055 1130 1.661743 GCACTATAGCTCGCTCAGTCG 60.662 57.143 0.00 0.00 0.00 4.18
1077 1165 3.324117 CACACTCACTCACTCATTCCTG 58.676 50.000 0.00 0.00 0.00 3.86
1078 1166 2.289320 ACACTCACTCACTCATTCCTGC 60.289 50.000 0.00 0.00 0.00 4.85
1079 1167 1.973515 ACTCACTCACTCATTCCTGCA 59.026 47.619 0.00 0.00 0.00 4.41
1080 1168 2.289320 ACTCACTCACTCATTCCTGCAC 60.289 50.000 0.00 0.00 0.00 4.57
1131 1225 2.124983 CCTCCACGTCCATGGCAG 60.125 66.667 6.96 5.76 39.85 4.85
1183 1277 4.803426 CCTCCTGTCGCCGCTGAC 62.803 72.222 7.99 7.99 39.37 3.51
1207 1313 3.330853 CTCGTATTCGGCGGCAGC 61.331 66.667 10.53 0.00 44.18 5.25
1322 1446 1.377333 GCCCTACTGCAACTGGTCC 60.377 63.158 0.00 0.00 0.00 4.46
1341 1465 4.295119 ACGTCACCTGCACGGACC 62.295 66.667 8.91 0.00 41.73 4.46
1351 1478 2.760385 CACGGACCCCTCCTCCTC 60.760 72.222 0.00 0.00 33.79 3.71
1352 1479 4.444081 ACGGACCCCTCCTCCTCG 62.444 72.222 0.00 0.00 33.79 4.63
1353 1480 4.444081 CGGACCCCTCCTCCTCGT 62.444 72.222 0.00 0.00 33.79 4.18
1354 1481 2.442458 GGACCCCTCCTCCTCGTC 60.442 72.222 0.00 0.00 33.07 4.20
1355 1482 2.442458 GACCCCTCCTCCTCGTCC 60.442 72.222 0.00 0.00 0.00 4.79
1748 1881 0.614979 TCACCAGCCTCCACTACCTC 60.615 60.000 0.00 0.00 0.00 3.85
1844 1982 2.352805 CTGCAGGGGTCAGGGTTC 59.647 66.667 5.57 0.00 0.00 3.62
1901 2039 3.684693 GCTGGAGGCTCTTGATCTC 57.315 57.895 15.23 0.00 38.06 2.75
1910 2048 3.975312 AGGCTCTTGATCTCTCCATGAAT 59.025 43.478 0.00 0.00 0.00 2.57
2075 2249 4.785453 GCCTTCACCGGGGAGCTG 62.785 72.222 6.46 0.00 0.00 4.24
2120 2294 4.393155 TTGCAGGTCATCCGCGCT 62.393 61.111 5.56 0.00 37.71 5.92
2192 2366 1.376553 GCTGGAGCAGGTTCAGGTC 60.377 63.158 10.06 0.00 41.59 3.85
2340 2514 3.918294 TGAGCATCATCAACATCTCCA 57.082 42.857 0.00 0.00 42.56 3.86
2345 2519 4.157289 AGCATCATCAACATCTCCAACAAC 59.843 41.667 0.00 0.00 0.00 3.32
2396 2607 0.176680 ACTGCAAGAGGCTGGTATCG 59.823 55.000 0.00 0.00 44.93 2.92
2417 2628 4.329545 TCCCTGTCCAGCAACGGC 62.330 66.667 0.00 0.00 41.61 5.68
2540 2755 0.250295 ACCTGAAGCTTGCGTTGCTA 60.250 50.000 2.10 0.00 40.22 3.49
2755 2970 3.263941 CGTAGGGGTGTTTGCAGC 58.736 61.111 0.00 0.00 41.99 5.25
2759 2974 0.184933 TAGGGGTGTTTGCAGCTTGT 59.815 50.000 0.00 0.00 42.33 3.16
2948 3168 2.558313 GTGAAGCGGCTGTTCAGC 59.442 61.111 15.41 15.41 34.59 4.26
3006 3226 0.109781 GAAAGCGCTGGCGAAAATCA 60.110 50.000 12.58 0.00 46.35 2.57
3035 3255 1.636148 ATGTTGCCAAGATTGCAGGT 58.364 45.000 0.00 0.00 40.35 4.00
3041 3261 1.615392 GCCAAGATTGCAGGTTTCTGT 59.385 47.619 0.00 0.00 42.78 3.41
3045 3265 4.466828 CAAGATTGCAGGTTTCTGTTACG 58.533 43.478 0.00 0.00 42.78 3.18
3053 3273 1.606224 GGTTTCTGTTACGCGGAAGGA 60.606 52.381 12.47 6.83 42.79 3.36
3085 3305 9.196552 CAGCGTCATATATGAATACTTTCAGAA 57.803 33.333 16.97 0.00 44.75 3.02
3098 3318 8.691661 AATACTTTCAGAAAGGAAGCTTACAA 57.308 30.769 24.02 0.00 42.82 2.41
3119 3339 1.723542 GATATGATCTGTGCGCCGAAG 59.276 52.381 4.18 0.00 0.00 3.79
3207 3427 4.152647 TCACCATGATTATACTCCTCGCT 58.847 43.478 0.00 0.00 0.00 4.93
3296 3516 3.479006 GTTTGGAATTCATCGTGTCGTG 58.521 45.455 7.93 0.00 0.00 4.35
3302 3522 1.884075 TTCATCGTGTCGTGGGGGAG 61.884 60.000 0.00 0.00 0.00 4.30
3311 3531 2.432300 CGTGGGGGAGAAGGCGTAT 61.432 63.158 0.00 0.00 0.00 3.06
3335 3555 4.212214 CGATCTTCCTTGGATTCGGATTTC 59.788 45.833 8.39 0.00 0.00 2.17
3409 3634 1.215423 ACCAGGTTTTGAAGAGCCTGT 59.785 47.619 8.39 0.00 45.08 4.00
3410 3635 2.310538 CCAGGTTTTGAAGAGCCTGTT 58.689 47.619 8.39 0.00 45.08 3.16
3416 3641 4.506095 GGTTTTGAAGAGCCTGTTACCCTA 60.506 45.833 0.00 0.00 0.00 3.53
3417 3642 5.254115 GTTTTGAAGAGCCTGTTACCCTAT 58.746 41.667 0.00 0.00 0.00 2.57
3418 3643 4.755266 TTGAAGAGCCTGTTACCCTATC 57.245 45.455 0.00 0.00 0.00 2.08
3419 3644 3.039011 TGAAGAGCCTGTTACCCTATCC 58.961 50.000 0.00 0.00 0.00 2.59
3420 3645 3.310193 GAAGAGCCTGTTACCCTATCCT 58.690 50.000 0.00 0.00 0.00 3.24
3482 3707 8.617290 ATTTGTTTTAGTAGTAACCTCACTGG 57.383 34.615 0.00 0.00 42.93 4.00
3485 3710 8.654485 TGTTTTAGTAGTAACCTCACTGGATA 57.346 34.615 0.00 0.00 39.71 2.59
3499 3724 6.428159 CCTCACTGGATAATTGCACCTTATAC 59.572 42.308 4.20 4.20 38.35 1.47
3500 3725 7.136822 TCACTGGATAATTGCACCTTATACT 57.863 36.000 10.38 0.00 0.00 2.12
3501 3726 7.573710 TCACTGGATAATTGCACCTTATACTT 58.426 34.615 10.38 0.00 0.00 2.24
3502 3727 7.715249 TCACTGGATAATTGCACCTTATACTTC 59.285 37.037 10.38 0.00 0.00 3.01
3503 3728 7.716998 CACTGGATAATTGCACCTTATACTTCT 59.283 37.037 10.38 0.00 0.00 2.85
3504 3729 7.934120 ACTGGATAATTGCACCTTATACTTCTC 59.066 37.037 10.38 0.00 0.00 2.87
3505 3730 6.929049 TGGATAATTGCACCTTATACTTCTCG 59.071 38.462 10.38 0.00 0.00 4.04
3506 3731 6.929606 GGATAATTGCACCTTATACTTCTCGT 59.070 38.462 0.00 0.00 0.00 4.18
3507 3732 8.086522 GGATAATTGCACCTTATACTTCTCGTA 58.913 37.037 0.00 0.00 0.00 3.43
3508 3733 9.472361 GATAATTGCACCTTATACTTCTCGTAA 57.528 33.333 0.00 0.00 0.00 3.18
3509 3734 9.826574 ATAATTGCACCTTATACTTCTCGTAAA 57.173 29.630 0.00 0.00 0.00 2.01
3510 3735 8.556213 AATTGCACCTTATACTTCTCGTAAAA 57.444 30.769 0.00 0.00 0.00 1.52
3511 3736 7.966246 TTGCACCTTATACTTCTCGTAAAAA 57.034 32.000 0.00 0.00 0.00 1.94
3550 3775 7.973048 ACATATCAAGAAGGTAGAGTTGGTA 57.027 36.000 0.00 0.00 0.00 3.25
3680 3905 2.633488 GTCTACAGCTTTGGGGTCATC 58.367 52.381 0.00 0.00 0.00 2.92
3737 3962 2.343758 GCGTCCAAGGACTGCTCA 59.656 61.111 20.77 0.00 42.54 4.26
3809 4034 1.000283 CAGATACTCGACCCCAGCATC 60.000 57.143 0.00 0.00 0.00 3.91
3901 4126 0.882042 CAGAGGCCGGACATGTATGC 60.882 60.000 11.69 1.32 0.00 3.14
3938 4163 0.682852 AGGCGCTGTAGTTTGTACCA 59.317 50.000 7.64 0.00 0.00 3.25
3986 4211 5.645067 TCTGAAGTTGCTATGTGATCTTTGG 59.355 40.000 0.00 0.00 0.00 3.28
4128 4353 1.400242 GCCTGTGTGATTCGCTTGTTC 60.400 52.381 0.00 0.00 0.00 3.18
4278 4503 7.951347 ACTTGCAAATATCTGAAAATCCTCT 57.049 32.000 0.00 0.00 0.00 3.69
4356 4581 6.429692 TCCATTACAGGACATAAACACACAAG 59.570 38.462 0.00 0.00 31.23 3.16
4497 4725 2.323999 CTCTCCATATGAGGGGCTCT 57.676 55.000 3.65 0.00 41.76 4.09
4576 4804 6.095300 CAGGCATGATAAACATAACTTCCACA 59.905 38.462 0.00 0.00 37.46 4.17
4604 4832 0.460284 CGGTGGTGCTCACTATGTCC 60.460 60.000 9.83 0.00 45.38 4.02
4646 4875 3.273434 TCAATCCTCCAAATCTTGCTCG 58.727 45.455 0.00 0.00 0.00 5.03
4736 4965 3.678056 ATGTCGCTGAGAAAGTACCAA 57.322 42.857 0.00 0.00 0.00 3.67
4748 4977 5.133221 AGAAAGTACCAACAGATTGTGCTT 58.867 37.500 0.00 0.00 33.60 3.91
4794 5023 2.199652 CCAGCAACGGGAAGGCAAA 61.200 57.895 0.00 0.00 0.00 3.68
4809 5038 1.073284 GGCAAAGTGTAGACCTCCCAA 59.927 52.381 0.00 0.00 0.00 4.12
5002 5231 4.377897 CGGGGATAATACCTCAGAACAAC 58.622 47.826 0.00 0.00 0.00 3.32
5026 5255 1.153647 CATTCTCGGCTACACGGCA 60.154 57.895 0.00 0.00 38.27 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.472163 CACAATCACACAGTTTTAACAGGAAC 59.528 38.462 0.00 0.00 0.00 3.62
145 149 4.643334 CACTGCCACACCTACTACTACATA 59.357 45.833 0.00 0.00 0.00 2.29
148 152 2.824341 ACACTGCCACACCTACTACTAC 59.176 50.000 0.00 0.00 0.00 2.73
149 153 3.165087 ACACTGCCACACCTACTACTA 57.835 47.619 0.00 0.00 0.00 1.82
150 154 2.011122 ACACTGCCACACCTACTACT 57.989 50.000 0.00 0.00 0.00 2.57
189 193 6.127054 CCTGGTTCCAAGATGAGAATGTACTA 60.127 42.308 0.00 0.00 0.00 1.82
221 225 0.902984 TGGACTCATGCTACCCGTGT 60.903 55.000 0.00 0.00 0.00 4.49
233 237 3.554934 ACAACAGAAATGCTTGGACTCA 58.445 40.909 0.00 0.00 0.00 3.41
234 238 5.886960 ATACAACAGAAATGCTTGGACTC 57.113 39.130 0.00 0.00 0.00 3.36
246 250 6.544197 TGTTGCCTTTCAGTAATACAACAGAA 59.456 34.615 0.00 0.00 36.92 3.02
255 259 8.246180 CAGATATGTTTGTTGCCTTTCAGTAAT 58.754 33.333 0.00 0.00 0.00 1.89
267 271 7.148356 ACAGTATGACAGCAGATATGTTTGTTG 60.148 37.037 2.05 0.00 39.69 3.33
318 322 3.004734 CCACAAGTCTAGCCCAAACAAAG 59.995 47.826 0.00 0.00 0.00 2.77
319 323 2.955660 CCACAAGTCTAGCCCAAACAAA 59.044 45.455 0.00 0.00 0.00 2.83
328 332 2.611292 CAGCATAAGCCACAAGTCTAGC 59.389 50.000 0.00 0.00 43.56 3.42
414 423 3.940209 TTATTGGGCAGAAACAAGCAG 57.060 42.857 0.00 0.00 0.00 4.24
444 453 0.532115 ATCATGGCCCAAACGAAAGC 59.468 50.000 0.00 0.00 0.00 3.51
450 459 3.683365 AACTTCAATCATGGCCCAAAC 57.317 42.857 0.00 0.00 0.00 2.93
535 545 7.760340 CCTGTGTAACTAACCACTCTAAGAATC 59.240 40.741 0.00 0.00 38.04 2.52
536 546 7.234988 ACCTGTGTAACTAACCACTCTAAGAAT 59.765 37.037 0.00 0.00 38.04 2.40
537 547 6.552350 ACCTGTGTAACTAACCACTCTAAGAA 59.448 38.462 0.00 0.00 38.04 2.52
545 555 2.297033 TCCGACCTGTGTAACTAACCAC 59.703 50.000 0.00 0.00 38.04 4.16
546 556 2.559668 CTCCGACCTGTGTAACTAACCA 59.440 50.000 0.00 0.00 38.04 3.67
547 557 2.560105 ACTCCGACCTGTGTAACTAACC 59.440 50.000 0.00 0.00 38.04 2.85
548 558 3.254166 TCACTCCGACCTGTGTAACTAAC 59.746 47.826 0.00 0.00 38.04 2.34
549 559 3.489355 TCACTCCGACCTGTGTAACTAA 58.511 45.455 0.00 0.00 38.04 2.24
550 560 3.144657 TCACTCCGACCTGTGTAACTA 57.855 47.619 0.00 0.00 38.04 2.24
551 561 1.991121 TCACTCCGACCTGTGTAACT 58.009 50.000 0.00 0.00 38.04 2.24
552 562 2.607187 CATCACTCCGACCTGTGTAAC 58.393 52.381 0.00 0.00 35.82 2.50
553 563 1.067142 GCATCACTCCGACCTGTGTAA 60.067 52.381 0.00 0.00 35.82 2.41
554 564 0.530744 GCATCACTCCGACCTGTGTA 59.469 55.000 0.00 0.00 35.82 2.90
556 566 0.459237 GAGCATCACTCCGACCTGTG 60.459 60.000 0.00 0.00 39.75 3.66
557 567 1.893786 GAGCATCACTCCGACCTGT 59.106 57.895 0.00 0.00 39.75 4.00
565 575 2.468831 GATTCGACTGGAGCATCACTC 58.531 52.381 0.00 0.00 45.45 3.51
566 576 1.137872 GGATTCGACTGGAGCATCACT 59.862 52.381 0.00 0.00 36.25 3.41
606 651 4.097418 CTCACTCCTTCCCGGGATATTAT 58.903 47.826 27.48 7.73 34.56 1.28
607 652 3.141460 TCTCACTCCTTCCCGGGATATTA 59.859 47.826 27.48 8.51 34.56 0.98
609 654 1.503784 TCTCACTCCTTCCCGGGATAT 59.496 52.381 27.48 5.24 34.56 1.63
610 655 0.931468 TCTCACTCCTTCCCGGGATA 59.069 55.000 27.48 14.50 34.56 2.59
611 656 0.266152 ATCTCACTCCTTCCCGGGAT 59.734 55.000 27.48 5.68 34.56 3.85
613 658 0.687757 TGATCTCACTCCTTCCCGGG 60.688 60.000 16.85 16.85 0.00 5.73
614 659 0.749649 CTGATCTCACTCCTTCCCGG 59.250 60.000 0.00 0.00 0.00 5.73
615 660 1.407258 GTCTGATCTCACTCCTTCCCG 59.593 57.143 0.00 0.00 0.00 5.14
616 661 2.693074 GAGTCTGATCTCACTCCTTCCC 59.307 54.545 11.59 0.00 34.09 3.97
622 667 2.031120 CCCTGGAGTCTGATCTCACTC 58.969 57.143 13.45 13.45 38.71 3.51
625 670 1.342474 GGACCCTGGAGTCTGATCTCA 60.342 57.143 12.89 0.00 36.95 3.27
639 684 3.515901 GCGGATAGATAGAAATGGACCCT 59.484 47.826 0.00 0.00 0.00 4.34
640 685 3.260884 TGCGGATAGATAGAAATGGACCC 59.739 47.826 0.00 0.00 0.00 4.46
641 686 4.537135 TGCGGATAGATAGAAATGGACC 57.463 45.455 0.00 0.00 0.00 4.46
643 688 5.481824 AGTGATGCGGATAGATAGAAATGGA 59.518 40.000 0.00 0.00 0.00 3.41
644 689 5.728471 AGTGATGCGGATAGATAGAAATGG 58.272 41.667 0.00 0.00 0.00 3.16
646 691 5.416013 TCGAGTGATGCGGATAGATAGAAAT 59.584 40.000 0.00 0.00 0.00 2.17
647 692 4.760204 TCGAGTGATGCGGATAGATAGAAA 59.240 41.667 0.00 0.00 0.00 2.52
650 695 3.687212 ACTCGAGTGATGCGGATAGATAG 59.313 47.826 19.30 0.00 0.00 2.08
651 696 3.676093 ACTCGAGTGATGCGGATAGATA 58.324 45.455 19.30 0.00 0.00 1.98
652 697 2.509569 ACTCGAGTGATGCGGATAGAT 58.490 47.619 19.30 0.00 0.00 1.98
674 719 2.125106 CCGTCTAGGCAGGCAACC 60.125 66.667 0.00 0.00 37.17 3.77
683 728 1.135083 CACTGGTAGTTGCCGTCTAGG 60.135 57.143 0.00 0.00 44.97 3.02
684 729 1.736032 GCACTGGTAGTTGCCGTCTAG 60.736 57.143 0.00 0.00 0.00 2.43
685 730 0.245539 GCACTGGTAGTTGCCGTCTA 59.754 55.000 0.00 0.00 0.00 2.59
686 731 1.004918 GCACTGGTAGTTGCCGTCT 60.005 57.895 0.00 0.00 0.00 4.18
687 732 1.004918 AGCACTGGTAGTTGCCGTC 60.005 57.895 0.00 0.00 0.00 4.79
709 754 4.869440 CGAGAGGAGCAGCGCAGG 62.869 72.222 11.47 1.51 0.00 4.85
710 755 4.127040 ACGAGAGGAGCAGCGCAG 62.127 66.667 11.47 1.31 0.00 5.18
711 756 4.121669 GACGAGAGGAGCAGCGCA 62.122 66.667 11.47 0.00 0.00 6.09
712 757 4.863925 GGACGAGAGGAGCAGCGC 62.864 72.222 0.00 0.00 0.00 5.92
713 758 4.200283 GGGACGAGAGGAGCAGCG 62.200 72.222 0.00 0.00 0.00 5.18
741 786 3.598562 CGACGCGATGTGACGAGC 61.599 66.667 15.93 0.00 36.63 5.03
758 803 3.967715 GTCCTTCCTGTTGGACGC 58.032 61.111 0.00 0.00 43.06 5.19
761 806 0.771127 CCCTTGTCCTTCCTGTTGGA 59.229 55.000 0.00 0.00 41.36 3.53
762 807 0.895559 GCCCTTGTCCTTCCTGTTGG 60.896 60.000 0.00 0.00 0.00 3.77
830 875 2.337352 GCAACTTTTTCGCGTTATTCGG 59.663 45.455 5.77 0.00 40.26 4.30
838 883 2.428403 CGGGGCAACTTTTTCGCG 60.428 61.111 0.00 0.00 0.00 5.87
839 884 1.371267 GACGGGGCAACTTTTTCGC 60.371 57.895 0.00 0.00 0.00 4.70
840 885 1.284715 GGACGGGGCAACTTTTTCG 59.715 57.895 0.00 0.00 0.00 3.46
841 886 0.747852 TTGGACGGGGCAACTTTTTC 59.252 50.000 0.00 0.00 0.00 2.29
842 887 0.462375 GTTGGACGGGGCAACTTTTT 59.538 50.000 0.00 0.00 0.00 1.94
848 894 3.172106 TCAGGTTGGACGGGGCAA 61.172 61.111 0.00 0.00 0.00 4.52
903 949 1.786937 AGGCTACTAGCATGTCAGCT 58.213 50.000 10.27 0.00 44.75 4.24
904 950 3.296322 CTAGGCTACTAGCATGTCAGC 57.704 52.381 10.27 0.00 44.75 4.26
914 960 3.437213 TGTGCTTTCCACTAGGCTACTA 58.563 45.455 0.00 0.00 44.92 1.82
915 961 2.257207 TGTGCTTTCCACTAGGCTACT 58.743 47.619 0.00 0.00 44.92 2.57
916 962 2.762535 TGTGCTTTCCACTAGGCTAC 57.237 50.000 0.00 0.00 44.92 3.58
917 963 2.571653 ACATGTGCTTTCCACTAGGCTA 59.428 45.455 0.00 0.00 44.92 3.93
918 964 1.352352 ACATGTGCTTTCCACTAGGCT 59.648 47.619 0.00 0.00 44.92 4.58
919 965 1.740025 GACATGTGCTTTCCACTAGGC 59.260 52.381 1.15 0.00 44.92 3.93
920 966 3.057969 TGACATGTGCTTTCCACTAGG 57.942 47.619 1.15 0.00 44.92 3.02
921 967 4.095483 GGATTGACATGTGCTTTCCACTAG 59.905 45.833 1.15 0.00 44.92 2.57
922 968 4.009675 GGATTGACATGTGCTTTCCACTA 58.990 43.478 1.15 0.00 44.92 2.74
962 1008 1.807886 CGGTTGGACGGACTAGAGG 59.192 63.158 0.00 0.00 0.00 3.69
972 1038 0.736053 TGTTTTCACTGCGGTTGGAC 59.264 50.000 0.00 0.00 0.00 4.02
990 1057 1.108727 TGTTTTGTGGGGCAGAGCTG 61.109 55.000 0.00 0.00 0.00 4.24
1013 1080 2.677524 TGCTGCTGGTCAATGGCC 60.678 61.111 0.00 0.00 0.00 5.36
1028 1095 1.543941 CGAGCTATAGTGCGTGCTGC 61.544 60.000 0.84 0.00 46.70 5.25
1040 1107 1.064946 GTGCGACTGAGCGAGCTAT 59.935 57.895 0.00 0.00 40.67 2.97
1055 1130 2.072298 GGAATGAGTGAGTGAGTGTGC 58.928 52.381 0.00 0.00 0.00 4.57
1183 1277 0.387367 CGCCGAATACGAGGAGATGG 60.387 60.000 0.00 0.00 42.66 3.51
1322 1446 4.293648 TCCGTGCAGGTGACGTGG 62.294 66.667 7.43 0.00 41.99 4.94
1748 1881 4.308458 TGGTTGCCGGACAGGTCG 62.308 66.667 5.05 0.00 43.70 4.79
1844 1982 3.544167 CTCGGGTATCTCGCCGCTG 62.544 68.421 0.00 0.00 32.60 5.18
1901 2039 2.103094 TCCGGTCAAGCTATTCATGGAG 59.897 50.000 0.00 0.00 0.00 3.86
1910 2048 2.280552 AACGGCTCCGGTCAAGCTA 61.281 57.895 12.85 0.00 44.69 3.32
2192 2366 0.508641 CGGAGAAGCTGTTGTTGTCG 59.491 55.000 0.00 0.00 0.00 4.35
2222 2396 1.301558 GATCAGGCCGATGCTCTGG 60.302 63.158 13.68 0.00 36.80 3.86
2340 2514 2.746277 GCCGGAGATGGCGTTGTT 60.746 61.111 5.05 0.00 46.75 2.83
2417 2628 1.735376 CTGGTATCGTCCCGGTGAGG 61.735 65.000 0.00 3.41 40.63 3.86
2517 2732 1.069636 CAACGCAAGCTTCAGGTTCTC 60.070 52.381 0.00 0.00 45.62 2.87
2540 2755 0.940991 GCCGGTTGTACGAGACGTTT 60.941 55.000 1.90 0.00 41.54 3.60
2672 2887 1.484240 AGTGCTAGTCCCTGATGCTTC 59.516 52.381 0.00 0.00 0.00 3.86
2738 2953 0.889186 AAGCTGCAAACACCCCTACG 60.889 55.000 1.02 0.00 0.00 3.51
2755 2970 4.130118 GTTGCCATGTATCCTCCTACAAG 58.870 47.826 0.00 0.00 35.37 3.16
2759 2974 2.705658 CCTGTTGCCATGTATCCTCCTA 59.294 50.000 0.00 0.00 0.00 2.94
2807 3022 2.755103 GGTGATCTTGATTGGGTGGAAC 59.245 50.000 0.00 0.00 0.00 3.62
2948 3168 0.674581 TGAATGTCAGCTTGCCCGAG 60.675 55.000 0.00 0.00 0.00 4.63
3006 3226 3.130264 TGGCAACATTCTTGTGCCT 57.870 47.368 14.48 0.00 46.17 4.75
3035 3255 1.614903 TCTCCTTCCGCGTAACAGAAA 59.385 47.619 4.92 0.00 0.00 2.52
3041 3261 0.609957 TGACCTCTCCTTCCGCGTAA 60.610 55.000 4.92 0.00 0.00 3.18
3045 3265 2.185608 GCTGACCTCTCCTTCCGC 59.814 66.667 0.00 0.00 0.00 5.54
3053 3273 5.991933 ATTCATATATGACGCTGACCTCT 57.008 39.130 15.10 0.00 36.36 3.69
3085 3305 7.714377 CACAGATCATATCTTGTAAGCTTCCTT 59.286 37.037 0.00 0.00 37.58 3.36
3098 3318 0.961753 TCGGCGCACAGATCATATCT 59.038 50.000 10.83 0.00 41.15 1.98
3119 3339 1.635663 CGTTCCATCCCACAGCGAAC 61.636 60.000 0.00 0.00 0.00 3.95
3125 3345 1.676968 CCTGTCGTTCCATCCCACA 59.323 57.895 0.00 0.00 0.00 4.17
3164 3384 3.151912 AGATATGCCAATCCTTGAGCC 57.848 47.619 0.00 0.00 0.00 4.70
3207 3427 0.740516 TTCAGATCGCGATGCAGCAA 60.741 50.000 29.09 8.79 36.85 3.91
3281 3501 0.392461 CCCCCACGACACGATGAATT 60.392 55.000 0.00 0.00 0.00 2.17
3296 3516 1.186267 ATCGATACGCCTTCTCCCCC 61.186 60.000 0.00 0.00 0.00 5.40
3302 3522 3.053455 CAAGGAAGATCGATACGCCTTC 58.947 50.000 17.49 15.55 36.43 3.46
3311 3531 2.384828 TCCGAATCCAAGGAAGATCGA 58.615 47.619 18.05 0.00 33.64 3.59
3335 3555 2.535534 CGCGATGTAGCACTTGTCATTG 60.536 50.000 0.00 0.00 36.85 2.82
3409 3634 7.583416 GCAAATGCATAGGATAGGATAGGGTAA 60.583 40.741 0.00 0.00 41.59 2.85
3410 3635 6.126768 GCAAATGCATAGGATAGGATAGGGTA 60.127 42.308 0.00 0.00 41.59 3.69
3482 3707 7.948278 ACGAGAAGTATAAGGTGCAATTATC 57.052 36.000 8.33 2.99 0.00 1.75
3485 3710 8.556213 TTTTACGAGAAGTATAAGGTGCAATT 57.444 30.769 0.00 0.00 34.88 2.32
3523 3748 9.656323 ACCAACTCTACCTTCTTGATATGTATA 57.344 33.333 0.00 0.00 0.00 1.47
3524 3749 8.554490 ACCAACTCTACCTTCTTGATATGTAT 57.446 34.615 0.00 0.00 0.00 2.29
3574 3799 6.824305 ACTTCAGTACAATTTTATGCAGCT 57.176 33.333 0.00 0.00 0.00 4.24
3680 3905 2.664081 GGTGACCAGCTCCAGGAGG 61.664 68.421 18.83 5.07 0.00 4.30
3737 3962 1.826385 GCACCCAGCTAACAATGTCT 58.174 50.000 0.00 0.00 41.15 3.41
3901 4126 1.563435 CTGCAGCGACCTCACAACTG 61.563 60.000 0.00 0.00 0.00 3.16
3938 4163 0.035439 GGTGGTGTCCGTGGATGAAT 60.035 55.000 0.00 0.00 0.00 2.57
4356 4581 6.015265 GGTTTGTACTCTAGTCCCTATCATCC 60.015 46.154 0.00 0.00 0.00 3.51
4457 4683 1.805869 CACTGAAGAACTGGCAGAGG 58.194 55.000 23.66 0.00 33.94 3.69
4458 4684 1.155042 GCACTGAAGAACTGGCAGAG 58.845 55.000 23.66 9.38 33.94 3.35
4459 4685 0.250467 GGCACTGAAGAACTGGCAGA 60.250 55.000 23.66 0.00 33.94 4.26
4576 4804 4.722700 GCACCACCGGCCACATCT 62.723 66.667 0.00 0.00 0.00 2.90
4736 4965 2.233271 CCTCCACAAAGCACAATCTGT 58.767 47.619 0.00 0.00 0.00 3.41
4748 4977 3.961414 GTTCCGGGGCCTCCACAA 61.961 66.667 0.84 0.00 34.36 3.33
4794 5023 1.625508 GGGGATTGGGAGGTCTACACT 60.626 57.143 0.00 0.00 0.00 3.55
4809 5038 2.951787 GCATGGTCTTTGACATGGGGAT 60.952 50.000 0.00 0.00 33.68 3.85
5002 5231 3.736252 CCGTGTAGCCGAGAATGAAATAG 59.264 47.826 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.