Multiple sequence alignment - TraesCS2A01G329800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G329800 chr2A 100.000 3521 0 0 1 3521 562107245 562103725 0.000000e+00 6503
1 TraesCS2A01G329800 chr2D 96.007 2154 62 8 620 2753 426919886 426922035 0.000000e+00 3480
2 TraesCS2A01G329800 chr2D 86.790 704 63 15 2820 3521 426922403 426923078 0.000000e+00 758
3 TraesCS2A01G329800 chr2D 96.266 241 9 0 151 391 521074222 521074462 2.550000e-106 396
4 TraesCS2A01G329800 chr2D 93.750 144 8 1 10 152 47658289 47658432 7.660000e-52 215
5 TraesCS2A01G329800 chr2D 91.724 145 11 1 9 152 78766171 78766027 2.140000e-47 200
6 TraesCS2A01G329800 chr2D 93.000 100 6 1 497 595 426917429 426917528 1.020000e-30 145
7 TraesCS2A01G329800 chr3A 82.547 1484 232 21 1046 2517 128578443 128579911 0.000000e+00 1280
8 TraesCS2A01G329800 chr1A 82.131 1483 240 21 1046 2517 389806140 389804672 0.000000e+00 1247
9 TraesCS2A01G329800 chr1A 90.972 144 12 1 10 152 11628172 11628315 3.590000e-45 193
10 TraesCS2A01G329800 chr1D 81.484 1523 238 31 1011 2517 309923779 309922285 0.000000e+00 1210
11 TraesCS2A01G329800 chr1D 91.667 144 11 1 10 152 293904601 293904744 7.710000e-47 198
12 TraesCS2A01G329800 chr1B 81.637 855 141 14 1197 2043 419953048 419952202 0.000000e+00 695
13 TraesCS2A01G329800 chr1B 85.567 485 70 0 2033 2517 419951956 419951472 3.140000e-140 508
14 TraesCS2A01G329800 chr1B 96.266 241 9 0 151 391 517526968 517526728 2.550000e-106 396
15 TraesCS2A01G329800 chr2B 88.471 425 16 11 492 891 503608881 503609297 1.900000e-132 483
16 TraesCS2A01G329800 chr2B 97.131 244 3 1 151 390 67896656 67896899 3.270000e-110 409
17 TraesCS2A01G329800 chr7A 97.095 241 7 0 151 391 306602631 306602871 1.180000e-109 407
18 TraesCS2A01G329800 chr7A 91.034 145 12 1 10 153 52957162 52957306 9.970000e-46 195
19 TraesCS2A01G329800 chr6A 97.095 241 7 0 151 391 235369972 235370212 1.180000e-109 407
20 TraesCS2A01G329800 chr6A 94.444 252 11 3 141 390 351609147 351609397 5.510000e-103 385
21 TraesCS2A01G329800 chr3D 96.266 241 9 0 151 391 595565650 595565890 2.550000e-106 396
22 TraesCS2A01G329800 chrUn 95.851 241 10 0 151 391 91756356 91756596 1.190000e-104 390
23 TraesCS2A01G329800 chr7D 95.851 241 10 0 151 391 137681605 137681845 1.190000e-104 390
24 TraesCS2A01G329800 chr7D 80.124 161 22 8 3315 3468 378327296 378327453 1.030000e-20 111
25 TraesCS2A01G329800 chr5D 91.892 148 11 1 6 152 362997598 362997451 4.610000e-49 206
26 TraesCS2A01G329800 chr4A 91.724 145 11 1 9 152 665604287 665604143 2.140000e-47 200
27 TraesCS2A01G329800 chr4A 72.634 486 100 27 2027 2494 634844491 634844021 2.850000e-26 130
28 TraesCS2A01G329800 chr7B 91.667 144 11 1 10 152 281384505 281384648 7.710000e-47 198
29 TraesCS2A01G329800 chr5B 90.541 148 11 3 6 152 429619628 429619483 3.590000e-45 193
30 TraesCS2A01G329800 chr3B 78.603 229 43 6 2021 2246 414493862 414494087 2.830000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G329800 chr2A 562103725 562107245 3520 True 6503.0 6503 100.000000 1 3521 1 chr2A.!!$R1 3520
1 TraesCS2A01G329800 chr2D 426917429 426923078 5649 False 1461.0 3480 91.932333 497 3521 3 chr2D.!!$F3 3024
2 TraesCS2A01G329800 chr3A 128578443 128579911 1468 False 1280.0 1280 82.547000 1046 2517 1 chr3A.!!$F1 1471
3 TraesCS2A01G329800 chr1A 389804672 389806140 1468 True 1247.0 1247 82.131000 1046 2517 1 chr1A.!!$R1 1471
4 TraesCS2A01G329800 chr1D 309922285 309923779 1494 True 1210.0 1210 81.484000 1011 2517 1 chr1D.!!$R1 1506
5 TraesCS2A01G329800 chr1B 419951472 419953048 1576 True 601.5 695 83.602000 1197 2517 2 chr1B.!!$R2 1320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 537 1.019278 AGTATCGCGTTGTTGGGCTG 61.019 55.0 5.77 0.0 0.0 4.85 F
1665 4019 0.243907 CGGACACAACGATGGAGAGT 59.756 55.0 0.00 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 4025 1.173043 CGGTTTGCTTTAGCCCATCA 58.827 50.0 0.0 0.0 41.18 3.07 R
2776 5417 0.108615 CAGTAGGTGGCAAGAGGACG 60.109 60.0 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.950205 TTTCGAAAGTACTCCCTCTGTT 57.050 40.909 6.47 0.00 0.00 3.16
22 23 4.516365 TTCGAAAGTACTCCCTCTGTTC 57.484 45.455 0.00 0.00 0.00 3.18
23 24 2.824341 TCGAAAGTACTCCCTCTGTTCC 59.176 50.000 0.00 0.00 0.00 3.62
24 25 2.826725 CGAAAGTACTCCCTCTGTTCCT 59.173 50.000 0.00 0.00 0.00 3.36
25 26 4.015084 CGAAAGTACTCCCTCTGTTCCTA 58.985 47.826 0.00 0.00 0.00 2.94
26 27 4.461781 CGAAAGTACTCCCTCTGTTCCTAA 59.538 45.833 0.00 0.00 0.00 2.69
27 28 5.047519 CGAAAGTACTCCCTCTGTTCCTAAA 60.048 44.000 0.00 0.00 0.00 1.85
28 29 6.351117 CGAAAGTACTCCCTCTGTTCCTAAAT 60.351 42.308 0.00 0.00 0.00 1.40
29 30 7.147949 CGAAAGTACTCCCTCTGTTCCTAAATA 60.148 40.741 0.00 0.00 0.00 1.40
30 31 7.421087 AAGTACTCCCTCTGTTCCTAAATAC 57.579 40.000 0.00 0.00 0.00 1.89
31 32 6.500336 AGTACTCCCTCTGTTCCTAAATACA 58.500 40.000 0.00 0.00 0.00 2.29
32 33 6.958192 AGTACTCCCTCTGTTCCTAAATACAA 59.042 38.462 0.00 0.00 0.00 2.41
33 34 6.301169 ACTCCCTCTGTTCCTAAATACAAG 57.699 41.667 0.00 0.00 0.00 3.16
34 35 5.785940 ACTCCCTCTGTTCCTAAATACAAGT 59.214 40.000 0.00 0.00 0.00 3.16
35 36 6.070710 ACTCCCTCTGTTCCTAAATACAAGTC 60.071 42.308 0.00 0.00 0.00 3.01
36 37 6.023603 TCCCTCTGTTCCTAAATACAAGTCT 58.976 40.000 0.00 0.00 0.00 3.24
37 38 6.500751 TCCCTCTGTTCCTAAATACAAGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
38 39 7.017254 TCCCTCTGTTCCTAAATACAAGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
39 40 7.334671 CCCTCTGTTCCTAAATACAAGTCTTTC 59.665 40.741 0.00 0.00 0.00 2.62
40 41 8.097662 CCTCTGTTCCTAAATACAAGTCTTTCT 58.902 37.037 0.00 0.00 0.00 2.52
55 56 8.624776 ACAAGTCTTTCTAAAGATTCAACAAGG 58.375 33.333 8.31 0.00 45.83 3.61
56 57 7.751768 AGTCTTTCTAAAGATTCAACAAGGG 57.248 36.000 8.31 0.00 45.83 3.95
57 58 7.518188 AGTCTTTCTAAAGATTCAACAAGGGA 58.482 34.615 8.31 0.00 45.83 4.20
58 59 7.445707 AGTCTTTCTAAAGATTCAACAAGGGAC 59.554 37.037 8.31 0.00 45.83 4.46
59 60 7.445707 GTCTTTCTAAAGATTCAACAAGGGACT 59.554 37.037 8.31 0.00 45.83 3.85
60 61 8.656806 TCTTTCTAAAGATTCAACAAGGGACTA 58.343 33.333 1.00 0.00 37.73 2.59
61 62 8.617290 TTTCTAAAGATTCAACAAGGGACTAC 57.383 34.615 0.00 0.00 38.49 2.73
62 63 7.311092 TCTAAAGATTCAACAAGGGACTACA 57.689 36.000 0.00 0.00 38.49 2.74
63 64 7.918076 TCTAAAGATTCAACAAGGGACTACAT 58.082 34.615 0.00 0.00 38.49 2.29
64 65 9.042450 TCTAAAGATTCAACAAGGGACTACATA 57.958 33.333 0.00 0.00 38.49 2.29
65 66 7.923414 AAAGATTCAACAAGGGACTACATAC 57.077 36.000 0.00 0.00 38.49 2.39
66 67 5.661458 AGATTCAACAAGGGACTACATACG 58.339 41.667 0.00 0.00 38.49 3.06
67 68 3.880047 TCAACAAGGGACTACATACGG 57.120 47.619 0.00 0.00 38.49 4.02
68 69 3.433343 TCAACAAGGGACTACATACGGA 58.567 45.455 0.00 0.00 38.49 4.69
69 70 3.446161 TCAACAAGGGACTACATACGGAG 59.554 47.826 0.00 0.00 38.49 4.63
70 71 1.755380 ACAAGGGACTACATACGGAGC 59.245 52.381 0.00 0.00 38.49 4.70
71 72 1.754803 CAAGGGACTACATACGGAGCA 59.245 52.381 0.00 0.00 38.49 4.26
72 73 2.154567 AGGGACTACATACGGAGCAA 57.845 50.000 0.00 0.00 36.02 3.91
73 74 2.463752 AGGGACTACATACGGAGCAAA 58.536 47.619 0.00 0.00 36.02 3.68
74 75 2.835764 AGGGACTACATACGGAGCAAAA 59.164 45.455 0.00 0.00 36.02 2.44
75 76 3.454812 AGGGACTACATACGGAGCAAAAT 59.545 43.478 0.00 0.00 36.02 1.82
76 77 3.560068 GGGACTACATACGGAGCAAAATG 59.440 47.826 0.00 0.00 0.00 2.32
77 78 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
78 79 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
79 80 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
80 81 6.216801 ACTACATACGGAGCAAAATGAGTA 57.783 37.500 0.00 0.00 0.00 2.59
81 82 6.636705 ACTACATACGGAGCAAAATGAGTAA 58.363 36.000 0.00 0.00 0.00 2.24
82 83 7.101054 ACTACATACGGAGCAAAATGAGTAAA 58.899 34.615 0.00 0.00 0.00 2.01
83 84 7.769044 ACTACATACGGAGCAAAATGAGTAAAT 59.231 33.333 0.00 0.00 0.00 1.40
84 85 7.016361 ACATACGGAGCAAAATGAGTAAATC 57.984 36.000 0.00 0.00 0.00 2.17
85 86 6.823689 ACATACGGAGCAAAATGAGTAAATCT 59.176 34.615 0.00 0.00 0.00 2.40
86 87 7.985184 ACATACGGAGCAAAATGAGTAAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
87 88 6.663944 ACGGAGCAAAATGAGTAAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
88 89 6.170506 ACGGAGCAAAATGAGTAAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
89 90 6.092259 ACGGAGCAAAATGAGTAAATCTACAC 59.908 38.462 0.00 0.00 0.00 2.90
90 91 6.313905 CGGAGCAAAATGAGTAAATCTACACT 59.686 38.462 0.00 0.00 0.00 3.55
91 92 7.464710 CGGAGCAAAATGAGTAAATCTACACTC 60.465 40.741 0.00 0.00 41.31 3.51
92 93 7.550906 GGAGCAAAATGAGTAAATCTACACTCT 59.449 37.037 3.65 0.00 41.46 3.24
93 94 9.587772 GAGCAAAATGAGTAAATCTACACTCTA 57.412 33.333 3.65 0.00 41.46 2.43
94 95 9.944376 AGCAAAATGAGTAAATCTACACTCTAA 57.056 29.630 3.65 0.00 41.46 2.10
124 125 9.616634 ATGTTTATATACATCCGTACGTTGTAG 57.383 33.333 23.79 7.95 33.58 2.74
125 126 8.620416 TGTTTATATACATCCGTACGTTGTAGT 58.380 33.333 23.79 18.95 30.03 2.73
126 127 9.107367 GTTTATATACATCCGTACGTTGTAGTC 57.893 37.037 23.79 12.27 30.03 2.59
127 128 8.607441 TTATATACATCCGTACGTTGTAGTCT 57.393 34.615 23.79 14.92 30.03 3.24
128 129 9.705290 TTATATACATCCGTACGTTGTAGTCTA 57.295 33.333 23.79 16.07 30.03 2.59
129 130 8.783833 ATATACATCCGTACGTTGTAGTCTAT 57.216 34.615 23.79 17.08 30.03 1.98
130 131 5.824904 ACATCCGTACGTTGTAGTCTATT 57.175 39.130 15.21 0.00 0.00 1.73
131 132 6.199937 ACATCCGTACGTTGTAGTCTATTT 57.800 37.500 15.21 0.00 0.00 1.40
132 133 6.032094 ACATCCGTACGTTGTAGTCTATTTG 58.968 40.000 15.21 0.00 0.00 2.32
133 134 5.878332 TCCGTACGTTGTAGTCTATTTGA 57.122 39.130 15.21 0.00 0.00 2.69
134 135 6.252967 TCCGTACGTTGTAGTCTATTTGAA 57.747 37.500 15.21 0.00 0.00 2.69
135 136 6.676950 TCCGTACGTTGTAGTCTATTTGAAA 58.323 36.000 15.21 0.00 0.00 2.69
136 137 6.582295 TCCGTACGTTGTAGTCTATTTGAAAC 59.418 38.462 15.21 0.00 0.00 2.78
137 138 6.183360 CCGTACGTTGTAGTCTATTTGAAACC 60.183 42.308 15.21 0.00 0.00 3.27
138 139 6.583806 CGTACGTTGTAGTCTATTTGAAACCT 59.416 38.462 7.22 0.00 0.00 3.50
139 140 7.115378 CGTACGTTGTAGTCTATTTGAAACCTT 59.885 37.037 7.22 0.00 0.00 3.50
140 141 7.797038 ACGTTGTAGTCTATTTGAAACCTTT 57.203 32.000 0.00 0.00 0.00 3.11
141 142 8.891671 ACGTTGTAGTCTATTTGAAACCTTTA 57.108 30.769 0.00 0.00 0.00 1.85
142 143 9.328845 ACGTTGTAGTCTATTTGAAACCTTTAA 57.671 29.630 0.00 0.00 0.00 1.52
157 158 9.470399 TGAAACCTTTAAAAAGACTTACTTCCT 57.530 29.630 4.01 0.00 37.93 3.36
158 159 9.947669 GAAACCTTTAAAAAGACTTACTTCCTC 57.052 33.333 4.01 0.00 37.93 3.71
159 160 8.461249 AACCTTTAAAAAGACTTACTTCCTCC 57.539 34.615 4.01 0.00 37.93 4.30
160 161 7.813331 ACCTTTAAAAAGACTTACTTCCTCCT 58.187 34.615 4.01 0.00 37.93 3.69
161 162 8.280084 ACCTTTAAAAAGACTTACTTCCTCCTT 58.720 33.333 4.01 0.00 37.93 3.36
162 163 8.784994 CCTTTAAAAAGACTTACTTCCTCCTTC 58.215 37.037 4.01 0.00 37.93 3.46
163 164 8.687292 TTTAAAAAGACTTACTTCCTCCTTCC 57.313 34.615 0.00 0.00 37.93 3.46
164 165 5.906772 AAAAGACTTACTTCCTCCTTCCA 57.093 39.130 0.00 0.00 37.93 3.53
165 166 6.455690 AAAAGACTTACTTCCTCCTTCCAT 57.544 37.500 0.00 0.00 37.93 3.41
166 167 5.685520 AAGACTTACTTCCTCCTTCCATC 57.314 43.478 0.00 0.00 32.91 3.51
167 168 4.954089 AGACTTACTTCCTCCTTCCATCT 58.046 43.478 0.00 0.00 0.00 2.90
168 169 6.093617 AGACTTACTTCCTCCTTCCATCTA 57.906 41.667 0.00 0.00 0.00 1.98
169 170 6.688554 AGACTTACTTCCTCCTTCCATCTAT 58.311 40.000 0.00 0.00 0.00 1.98
170 171 7.827787 AGACTTACTTCCTCCTTCCATCTATA 58.172 38.462 0.00 0.00 0.00 1.31
171 172 8.461033 AGACTTACTTCCTCCTTCCATCTATAT 58.539 37.037 0.00 0.00 0.00 0.86
172 173 9.756571 GACTTACTTCCTCCTTCCATCTATATA 57.243 37.037 0.00 0.00 0.00 0.86
173 174 9.762381 ACTTACTTCCTCCTTCCATCTATATAG 57.238 37.037 3.10 3.10 0.00 1.31
174 175 9.196139 CTTACTTCCTCCTTCCATCTATATAGG 57.804 40.741 9.89 0.00 0.00 2.57
175 176 6.507568 ACTTCCTCCTTCCATCTATATAGGG 58.492 44.000 9.89 4.49 0.00 3.53
176 177 4.884961 TCCTCCTTCCATCTATATAGGGC 58.115 47.826 9.89 0.00 0.00 5.19
177 178 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
178 179 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
179 180 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
180 181 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
181 182 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
182 183 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
183 184 6.617371 CCTTCCATCTATATAGGGCCTAATGT 59.383 42.308 18.91 9.02 0.00 2.71
184 185 7.419518 CCTTCCATCTATATAGGGCCTAATGTG 60.420 44.444 18.91 10.40 0.00 3.21
185 186 6.512120 TCCATCTATATAGGGCCTAATGTGT 58.488 40.000 18.91 2.76 0.00 3.72
186 187 6.965866 TCCATCTATATAGGGCCTAATGTGTT 59.034 38.462 18.91 1.94 0.00 3.32
187 188 7.461043 TCCATCTATATAGGGCCTAATGTGTTT 59.539 37.037 18.91 1.12 0.00 2.83
188 189 8.109634 CCATCTATATAGGGCCTAATGTGTTTT 58.890 37.037 18.91 0.30 0.00 2.43
189 190 9.520515 CATCTATATAGGGCCTAATGTGTTTTT 57.479 33.333 18.91 0.00 0.00 1.94
190 191 9.740710 ATCTATATAGGGCCTAATGTGTTTTTC 57.259 33.333 18.91 0.00 0.00 2.29
191 192 8.719596 TCTATATAGGGCCTAATGTGTTTTTCA 58.280 33.333 18.91 0.00 0.00 2.69
192 193 9.349713 CTATATAGGGCCTAATGTGTTTTTCAA 57.650 33.333 18.91 0.00 0.00 2.69
193 194 4.871933 AGGGCCTAATGTGTTTTTCAAG 57.128 40.909 2.82 0.00 0.00 3.02
194 195 4.479158 AGGGCCTAATGTGTTTTTCAAGA 58.521 39.130 2.82 0.00 0.00 3.02
195 196 4.280929 AGGGCCTAATGTGTTTTTCAAGAC 59.719 41.667 2.82 0.00 0.00 3.01
196 197 4.556233 GGCCTAATGTGTTTTTCAAGACC 58.444 43.478 0.00 0.00 0.00 3.85
197 198 4.226761 GCCTAATGTGTTTTTCAAGACCG 58.773 43.478 0.00 0.00 0.00 4.79
198 199 4.226761 CCTAATGTGTTTTTCAAGACCGC 58.773 43.478 0.00 0.00 0.00 5.68
199 200 2.793278 ATGTGTTTTTCAAGACCGCC 57.207 45.000 0.00 0.00 0.00 6.13
200 201 1.757682 TGTGTTTTTCAAGACCGCCT 58.242 45.000 0.00 0.00 0.00 5.52
201 202 2.096248 TGTGTTTTTCAAGACCGCCTT 58.904 42.857 0.00 0.00 34.91 4.35
202 203 2.494073 TGTGTTTTTCAAGACCGCCTTT 59.506 40.909 0.00 0.00 31.42 3.11
203 204 2.857748 GTGTTTTTCAAGACCGCCTTTG 59.142 45.455 0.00 0.00 31.42 2.77
204 205 2.755655 TGTTTTTCAAGACCGCCTTTGA 59.244 40.909 0.00 0.00 31.42 2.69
205 206 3.113322 GTTTTTCAAGACCGCCTTTGAC 58.887 45.455 0.00 0.00 31.42 3.18
206 207 2.341846 TTTCAAGACCGCCTTTGACT 57.658 45.000 0.00 0.00 31.42 3.41
207 208 3.478857 TTTCAAGACCGCCTTTGACTA 57.521 42.857 0.00 0.00 31.42 2.59
208 209 3.695830 TTCAAGACCGCCTTTGACTAT 57.304 42.857 0.00 0.00 31.42 2.12
209 210 3.695830 TCAAGACCGCCTTTGACTATT 57.304 42.857 0.00 0.00 31.42 1.73
210 211 3.334691 TCAAGACCGCCTTTGACTATTG 58.665 45.455 0.00 0.00 31.42 1.90
211 212 3.007506 TCAAGACCGCCTTTGACTATTGA 59.992 43.478 0.00 0.00 31.42 2.57
212 213 3.914426 AGACCGCCTTTGACTATTGAT 57.086 42.857 0.00 0.00 0.00 2.57
213 214 5.105106 TCAAGACCGCCTTTGACTATTGATA 60.105 40.000 0.00 0.00 31.42 2.15
214 215 5.353394 AGACCGCCTTTGACTATTGATAA 57.647 39.130 0.00 0.00 0.00 1.75
215 216 5.360591 AGACCGCCTTTGACTATTGATAAG 58.639 41.667 0.00 0.00 0.00 1.73
216 217 5.128827 AGACCGCCTTTGACTATTGATAAGA 59.871 40.000 0.00 0.00 0.00 2.10
217 218 5.116882 ACCGCCTTTGACTATTGATAAGAC 58.883 41.667 0.00 0.00 0.00 3.01
218 219 5.104900 ACCGCCTTTGACTATTGATAAGACT 60.105 40.000 0.00 0.00 0.00 3.24
219 220 6.097839 ACCGCCTTTGACTATTGATAAGACTA 59.902 38.462 0.00 0.00 0.00 2.59
220 221 6.984474 CCGCCTTTGACTATTGATAAGACTAA 59.016 38.462 0.00 0.00 0.00 2.24
221 222 7.657761 CCGCCTTTGACTATTGATAAGACTAAT 59.342 37.037 0.00 0.00 0.00 1.73
222 223 9.692749 CGCCTTTGACTATTGATAAGACTAATA 57.307 33.333 0.00 0.00 0.00 0.98
278 279 2.669364 GAAAGCTCCTTTCACGTACGA 58.331 47.619 24.41 0.00 46.23 3.43
279 280 2.806608 AAGCTCCTTTCACGTACGAA 57.193 45.000 24.41 3.37 0.00 3.85
280 281 3.314541 AAGCTCCTTTCACGTACGAAT 57.685 42.857 24.41 0.00 0.00 3.34
281 282 3.314541 AGCTCCTTTCACGTACGAATT 57.685 42.857 24.41 0.00 0.00 2.17
282 283 3.660865 AGCTCCTTTCACGTACGAATTT 58.339 40.909 24.41 0.00 0.00 1.82
283 284 3.432252 AGCTCCTTTCACGTACGAATTTG 59.568 43.478 24.41 9.92 0.00 2.32
284 285 3.430895 GCTCCTTTCACGTACGAATTTGA 59.569 43.478 24.41 12.38 0.00 2.69
285 286 4.092968 GCTCCTTTCACGTACGAATTTGAT 59.907 41.667 24.41 0.00 0.00 2.57
286 287 5.524511 TCCTTTCACGTACGAATTTGATG 57.475 39.130 24.41 7.91 0.00 3.07
287 288 5.231702 TCCTTTCACGTACGAATTTGATGA 58.768 37.500 24.41 10.40 0.00 2.92
288 289 5.872617 TCCTTTCACGTACGAATTTGATGAT 59.127 36.000 24.41 0.00 0.00 2.45
289 290 5.959527 CCTTTCACGTACGAATTTGATGATG 59.040 40.000 24.41 5.52 0.00 3.07
290 291 6.402118 CCTTTCACGTACGAATTTGATGATGT 60.402 38.462 24.41 0.00 0.00 3.06
291 292 5.448926 TCACGTACGAATTTGATGATGTG 57.551 39.130 24.41 4.75 0.00 3.21
292 293 4.021822 CACGTACGAATTTGATGATGTGC 58.978 43.478 24.41 0.00 0.00 4.57
293 294 3.932710 ACGTACGAATTTGATGATGTGCT 59.067 39.130 24.41 0.00 0.00 4.40
294 295 4.391830 ACGTACGAATTTGATGATGTGCTT 59.608 37.500 24.41 0.00 0.00 3.91
295 296 5.106712 ACGTACGAATTTGATGATGTGCTTT 60.107 36.000 24.41 0.00 0.00 3.51
296 297 5.225743 CGTACGAATTTGATGATGTGCTTTG 59.774 40.000 10.44 0.00 0.00 2.77
297 298 5.125100 ACGAATTTGATGATGTGCTTTGT 57.875 34.783 0.00 0.00 0.00 2.83
298 299 4.919168 ACGAATTTGATGATGTGCTTTGTG 59.081 37.500 0.00 0.00 0.00 3.33
299 300 4.919168 CGAATTTGATGATGTGCTTTGTGT 59.081 37.500 0.00 0.00 0.00 3.72
300 301 6.085573 CGAATTTGATGATGTGCTTTGTGTA 58.914 36.000 0.00 0.00 0.00 2.90
301 302 6.581919 CGAATTTGATGATGTGCTTTGTGTAA 59.418 34.615 0.00 0.00 0.00 2.41
302 303 7.409661 CGAATTTGATGATGTGCTTTGTGTAAC 60.410 37.037 0.00 0.00 37.35 2.50
303 304 6.389830 TTTGATGATGTGCTTTGTGTAACT 57.610 33.333 0.00 0.00 38.04 2.24
304 305 6.389830 TTGATGATGTGCTTTGTGTAACTT 57.610 33.333 0.00 0.00 38.04 2.66
305 306 5.761003 TGATGATGTGCTTTGTGTAACTTG 58.239 37.500 0.00 0.00 38.04 3.16
306 307 3.963665 TGATGTGCTTTGTGTAACTTGC 58.036 40.909 0.00 0.00 38.04 4.01
307 308 3.379688 TGATGTGCTTTGTGTAACTTGCA 59.620 39.130 0.00 0.00 38.04 4.08
308 309 4.037803 TGATGTGCTTTGTGTAACTTGCAT 59.962 37.500 0.00 0.00 38.61 3.96
309 310 3.704512 TGTGCTTTGTGTAACTTGCATG 58.295 40.909 0.00 0.00 38.61 4.06
310 311 3.130164 TGTGCTTTGTGTAACTTGCATGT 59.870 39.130 0.00 0.00 38.61 3.21
311 312 3.730715 GTGCTTTGTGTAACTTGCATGTC 59.269 43.478 5.61 0.00 38.61 3.06
312 313 3.379688 TGCTTTGTGTAACTTGCATGTCA 59.620 39.130 5.61 0.00 38.04 3.58
313 314 4.037803 TGCTTTGTGTAACTTGCATGTCAT 59.962 37.500 5.61 0.00 38.04 3.06
314 315 5.240403 TGCTTTGTGTAACTTGCATGTCATA 59.760 36.000 5.61 0.00 38.04 2.15
315 316 6.072008 TGCTTTGTGTAACTTGCATGTCATAT 60.072 34.615 5.61 0.00 38.04 1.78
316 317 7.120432 TGCTTTGTGTAACTTGCATGTCATATA 59.880 33.333 5.61 0.00 38.04 0.86
317 318 8.131100 GCTTTGTGTAACTTGCATGTCATATAT 58.869 33.333 5.61 0.00 38.04 0.86
353 354 5.744666 CTTGGTCAAAGTTAACCTCGAAA 57.255 39.130 0.88 0.00 36.47 3.46
354 355 6.126568 CTTGGTCAAAGTTAACCTCGAAAA 57.873 37.500 0.88 0.00 36.47 2.29
355 356 6.512342 TTGGTCAAAGTTAACCTCGAAAAA 57.488 33.333 0.88 0.00 36.47 1.94
356 357 5.882553 TGGTCAAAGTTAACCTCGAAAAAC 58.117 37.500 0.88 0.00 36.47 2.43
357 358 4.965762 GGTCAAAGTTAACCTCGAAAAACG 59.034 41.667 0.88 0.00 44.09 3.60
367 368 2.773993 TCGAAAAACGATTAGGCCCT 57.226 45.000 0.00 0.00 46.45 5.19
368 369 3.891422 TCGAAAAACGATTAGGCCCTA 57.109 42.857 0.00 0.00 46.45 3.53
369 370 4.411256 TCGAAAAACGATTAGGCCCTAT 57.589 40.909 0.00 0.00 46.45 2.57
370 371 5.534207 TCGAAAAACGATTAGGCCCTATA 57.466 39.130 0.00 0.00 46.45 1.31
371 372 6.105397 TCGAAAAACGATTAGGCCCTATAT 57.895 37.500 0.00 0.00 46.45 0.86
372 373 7.230849 TCGAAAAACGATTAGGCCCTATATA 57.769 36.000 0.00 0.00 46.45 0.86
373 374 7.318141 TCGAAAAACGATTAGGCCCTATATAG 58.682 38.462 0.00 2.46 46.45 1.31
374 375 7.177216 TCGAAAAACGATTAGGCCCTATATAGA 59.823 37.037 11.53 0.00 46.45 1.98
375 376 7.980099 CGAAAAACGATTAGGCCCTATATAGAT 59.020 37.037 11.53 0.00 45.77 1.98
376 377 9.099454 GAAAAACGATTAGGCCCTATATAGATG 57.901 37.037 11.53 3.39 0.00 2.90
377 378 6.732896 AACGATTAGGCCCTATATAGATGG 57.267 41.667 11.53 6.04 0.00 3.51
378 379 6.027025 ACGATTAGGCCCTATATAGATGGA 57.973 41.667 11.53 0.00 0.00 3.41
379 380 6.441222 ACGATTAGGCCCTATATAGATGGAA 58.559 40.000 11.53 0.00 0.00 3.53
380 381 6.551601 ACGATTAGGCCCTATATAGATGGAAG 59.448 42.308 11.53 0.00 0.00 3.46
381 382 6.015010 CGATTAGGCCCTATATAGATGGAAGG 60.015 46.154 11.53 3.94 0.00 3.46
382 383 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
383 384 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
384 385 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
385 386 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
386 387 4.561752 CCCTATATAGATGGAAGGAGGGG 58.438 52.174 11.53 0.00 39.03 4.79
387 388 4.561752 CCTATATAGATGGAAGGAGGGGG 58.438 52.174 11.53 0.00 0.00 5.40
388 389 4.015163 CCTATATAGATGGAAGGAGGGGGT 60.015 50.000 11.53 0.00 0.00 4.95
389 390 5.198013 CCTATATAGATGGAAGGAGGGGGTA 59.802 48.000 11.53 0.00 0.00 3.69
390 391 5.858532 ATATAGATGGAAGGAGGGGGTAT 57.141 43.478 0.00 0.00 0.00 2.73
391 392 6.963154 ATATAGATGGAAGGAGGGGGTATA 57.037 41.667 0.00 0.00 0.00 1.47
392 393 5.858532 ATAGATGGAAGGAGGGGGTATAT 57.141 43.478 0.00 0.00 0.00 0.86
393 394 4.526991 AGATGGAAGGAGGGGGTATATT 57.473 45.455 0.00 0.00 0.00 1.28
394 395 4.856343 AGATGGAAGGAGGGGGTATATTT 58.144 43.478 0.00 0.00 0.00 1.40
395 396 6.002039 AGATGGAAGGAGGGGGTATATTTA 57.998 41.667 0.00 0.00 0.00 1.40
396 397 6.032693 AGATGGAAGGAGGGGGTATATTTAG 58.967 44.000 0.00 0.00 0.00 1.85
397 398 4.509321 TGGAAGGAGGGGGTATATTTAGG 58.491 47.826 0.00 0.00 0.00 2.69
398 399 4.175268 TGGAAGGAGGGGGTATATTTAGGA 59.825 45.833 0.00 0.00 0.00 2.94
399 400 5.167921 GGAAGGAGGGGGTATATTTAGGAA 58.832 45.833 0.00 0.00 0.00 3.36
400 401 5.796399 GGAAGGAGGGGGTATATTTAGGAAT 59.204 44.000 0.00 0.00 0.00 3.01
401 402 6.970041 GGAAGGAGGGGGTATATTTAGGAATA 59.030 42.308 0.00 0.00 32.56 1.75
402 403 7.127493 GGAAGGAGGGGGTATATTTAGGAATAG 59.873 44.444 0.00 0.00 31.58 1.73
403 404 7.386015 AGGAGGGGGTATATTTAGGAATAGA 57.614 40.000 0.00 0.00 31.58 1.98
404 405 7.431682 AGGAGGGGGTATATTTAGGAATAGAG 58.568 42.308 0.00 0.00 31.58 2.43
405 406 6.616137 GGAGGGGGTATATTTAGGAATAGAGG 59.384 46.154 0.00 0.00 31.58 3.69
406 407 6.522220 AGGGGGTATATTTAGGAATAGAGGG 58.478 44.000 0.00 0.00 31.58 4.30
407 408 6.284557 AGGGGGTATATTTAGGAATAGAGGGA 59.715 42.308 0.00 0.00 31.58 4.20
408 409 6.616137 GGGGGTATATTTAGGAATAGAGGGAG 59.384 46.154 0.00 0.00 31.58 4.30
409 410 7.197616 GGGGTATATTTAGGAATAGAGGGAGT 58.802 42.308 0.00 0.00 31.58 3.85
410 411 8.349882 GGGGTATATTTAGGAATAGAGGGAGTA 58.650 40.741 0.00 0.00 31.58 2.59
411 412 9.779951 GGGTATATTTAGGAATAGAGGGAGTAA 57.220 37.037 0.00 0.00 31.58 2.24
416 417 6.980416 TTAGGAATAGAGGGAGTAAGAAGC 57.020 41.667 0.00 0.00 0.00 3.86
417 418 4.884961 AGGAATAGAGGGAGTAAGAAGCA 58.115 43.478 0.00 0.00 0.00 3.91
418 419 5.281314 AGGAATAGAGGGAGTAAGAAGCAA 58.719 41.667 0.00 0.00 0.00 3.91
419 420 5.908247 AGGAATAGAGGGAGTAAGAAGCAAT 59.092 40.000 0.00 0.00 0.00 3.56
420 421 6.042666 AGGAATAGAGGGAGTAAGAAGCAATC 59.957 42.308 0.00 0.00 0.00 2.67
421 422 6.183361 GGAATAGAGGGAGTAAGAAGCAATCA 60.183 42.308 0.00 0.00 0.00 2.57
422 423 4.479786 AGAGGGAGTAAGAAGCAATCAC 57.520 45.455 0.00 0.00 0.00 3.06
423 424 3.198853 AGAGGGAGTAAGAAGCAATCACC 59.801 47.826 0.00 0.00 0.00 4.02
424 425 2.239907 AGGGAGTAAGAAGCAATCACCC 59.760 50.000 0.00 0.00 35.53 4.61
425 426 2.644676 GGAGTAAGAAGCAATCACCCC 58.355 52.381 0.00 0.00 0.00 4.95
426 427 2.239907 GGAGTAAGAAGCAATCACCCCT 59.760 50.000 0.00 0.00 0.00 4.79
427 428 3.308473 GGAGTAAGAAGCAATCACCCCTT 60.308 47.826 0.00 0.00 0.00 3.95
428 429 4.080526 GGAGTAAGAAGCAATCACCCCTTA 60.081 45.833 0.00 0.00 0.00 2.69
429 430 5.497474 GAGTAAGAAGCAATCACCCCTTAA 58.503 41.667 0.00 0.00 0.00 1.85
430 431 5.887754 AGTAAGAAGCAATCACCCCTTAAA 58.112 37.500 0.00 0.00 0.00 1.52
431 432 6.494059 AGTAAGAAGCAATCACCCCTTAAAT 58.506 36.000 0.00 0.00 0.00 1.40
432 433 7.639378 AGTAAGAAGCAATCACCCCTTAAATA 58.361 34.615 0.00 0.00 0.00 1.40
433 434 8.113462 AGTAAGAAGCAATCACCCCTTAAATAA 58.887 33.333 0.00 0.00 0.00 1.40
434 435 7.978099 AAGAAGCAATCACCCCTTAAATAAT 57.022 32.000 0.00 0.00 0.00 1.28
436 437 8.697507 AGAAGCAATCACCCCTTAAATAATAG 57.302 34.615 0.00 0.00 0.00 1.73
437 438 7.725844 AGAAGCAATCACCCCTTAAATAATAGG 59.274 37.037 0.00 0.00 0.00 2.57
438 439 6.922540 AGCAATCACCCCTTAAATAATAGGT 58.077 36.000 0.00 0.00 0.00 3.08
439 440 8.052621 AGCAATCACCCCTTAAATAATAGGTA 57.947 34.615 0.00 0.00 0.00 3.08
440 441 8.678798 AGCAATCACCCCTTAAATAATAGGTAT 58.321 33.333 0.00 0.00 0.00 2.73
441 442 9.969001 GCAATCACCCCTTAAATAATAGGTATA 57.031 33.333 0.00 0.00 0.00 1.47
444 445 9.869574 ATCACCCCTTAAATAATAGGTATAGGT 57.130 33.333 0.00 0.00 0.00 3.08
460 461 8.936764 AGGTATAGGTATAGACTAGGTCATCT 57.063 38.462 0.00 0.00 34.60 2.90
474 475 7.721286 CTAGGTCATCTAGCGATTGATTTTT 57.279 36.000 0.00 0.00 39.02 1.94
506 507 1.038130 AGCTAGAGTACCGGTGGCTG 61.038 60.000 19.93 5.01 0.00 4.85
509 510 4.468689 GAGTACCGGTGGCTGCCC 62.469 72.222 19.93 7.43 0.00 5.36
535 537 1.019278 AGTATCGCGTTGTTGGGCTG 61.019 55.000 5.77 0.00 0.00 4.85
765 3104 3.436704 CGTGAGGAATAACAACTGCACAT 59.563 43.478 0.00 0.00 0.00 3.21
766 3105 4.669965 CGTGAGGAATAACAACTGCACATG 60.670 45.833 0.00 0.00 0.00 3.21
774 3121 7.651704 GGAATAACAACTGCACATGTAGTTTTT 59.348 33.333 12.04 13.96 46.31 1.94
884 3231 4.016444 CTGGTAAAGGAAAATAGCCTGCA 58.984 43.478 0.00 0.00 35.50 4.41
903 3250 3.131478 GCATCGACCGGGTTTGGG 61.131 66.667 6.32 0.00 0.00 4.12
911 3258 1.901464 CCGGGTTTGGGTCAAGGTG 60.901 63.158 0.00 0.00 0.00 4.00
1084 3437 0.443869 CCGCCTCATCAAGAACAACG 59.556 55.000 0.00 0.00 0.00 4.10
1188 3541 3.165498 GGTAACAGCAAGACCGCG 58.835 61.111 0.00 0.00 36.85 6.46
1236 3589 1.594862 CTGAATTCTTCGATGCCGTCC 59.405 52.381 7.05 0.00 37.05 4.79
1254 3607 1.812093 CGCGGCGACTTTATTCCCA 60.812 57.895 19.16 0.00 0.00 4.37
1344 3697 2.185350 CTCCGCGTCCTGAAGCAT 59.815 61.111 4.92 0.00 35.53 3.79
1512 3866 0.250295 CGAAAGAGGTGAAGGTGGCA 60.250 55.000 0.00 0.00 0.00 4.92
1518 3872 2.594592 GTGAAGGTGGCAGCGGTT 60.595 61.111 11.51 0.38 0.00 4.44
1521 3875 1.003718 GAAGGTGGCAGCGGTTAGT 60.004 57.895 11.51 0.00 0.00 2.24
1563 3917 1.801178 GTGGAGGCGTTCTTGAAAGAG 59.199 52.381 0.77 0.00 36.22 2.85
1566 3920 3.260884 TGGAGGCGTTCTTGAAAGAGTAT 59.739 43.478 0.77 0.00 36.22 2.12
1665 4019 0.243907 CGGACACAACGATGGAGAGT 59.756 55.000 0.00 0.00 0.00 3.24
1669 4023 2.989840 GACACAACGATGGAGAGTCTTG 59.010 50.000 0.00 0.00 0.00 3.02
1671 4025 3.181465 ACACAACGATGGAGAGTCTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
1698 4052 3.181506 GGCTAAAGCAAACCGAGATGAAG 60.182 47.826 4.07 0.00 44.36 3.02
1803 4157 1.867363 ACATCTACTTCCCCTTCGCT 58.133 50.000 0.00 0.00 0.00 4.93
1816 4170 2.060004 CTTCGCTATCGTCCTCGCCA 62.060 60.000 0.00 0.00 36.96 5.69
1845 4199 3.803715 GCATCGCCATCTACACCATACTT 60.804 47.826 0.00 0.00 0.00 2.24
1853 4207 0.325860 TACACCATACTTCCCCGGCT 60.326 55.000 0.00 0.00 0.00 5.52
1854 4208 1.205460 ACACCATACTTCCCCGGCTT 61.205 55.000 0.00 0.00 0.00 4.35
2028 4388 4.047059 TCCGTCTTCGCCGTGACC 62.047 66.667 7.23 0.00 35.54 4.02
2187 4803 3.884350 CGCGAGCCGTACCTGCTA 61.884 66.667 0.00 0.00 39.69 3.49
2528 5145 7.609056 ACGAAGAAAAGCAATTAGTAGGAGTA 58.391 34.615 0.00 0.00 0.00 2.59
2535 5152 9.569122 AAAAGCAATTAGTAGGAGTAAAGTGAA 57.431 29.630 0.00 0.00 0.00 3.18
2618 5235 5.455525 CAGAACGGTGAATTGAGTTTGTTTC 59.544 40.000 0.00 0.00 0.00 2.78
2631 5248 6.831769 TGAGTTTGTTTCGAATGCTAGAATC 58.168 36.000 0.00 0.00 0.00 2.52
2633 5250 7.173218 TGAGTTTGTTTCGAATGCTAGAATCTT 59.827 33.333 0.00 0.00 0.00 2.40
2634 5251 8.547967 AGTTTGTTTCGAATGCTAGAATCTTA 57.452 30.769 0.00 0.00 0.00 2.10
2636 5253 9.774742 GTTTGTTTCGAATGCTAGAATCTTATT 57.225 29.630 0.00 0.00 0.00 1.40
2696 5313 3.040965 TGCAAGGCAGGAAAAGAGG 57.959 52.632 0.00 0.00 33.32 3.69
2698 5315 1.253593 GCAAGGCAGGAAAAGAGGGG 61.254 60.000 0.00 0.00 0.00 4.79
2699 5316 0.613012 CAAGGCAGGAAAAGAGGGGG 60.613 60.000 0.00 0.00 0.00 5.40
2777 5418 7.774224 TGAAAAACGAACATGTTTGATATCG 57.226 32.000 28.80 20.53 41.01 2.92
2778 5419 7.356540 TGAAAAACGAACATGTTTGATATCGT 58.643 30.769 28.80 21.15 41.01 3.73
2779 5420 7.532546 TGAAAAACGAACATGTTTGATATCGTC 59.467 33.333 28.80 17.60 41.01 4.20
2780 5421 5.464965 AACGAACATGTTTGATATCGTCC 57.535 39.130 28.80 4.85 38.35 4.79
2781 5422 4.755411 ACGAACATGTTTGATATCGTCCT 58.245 39.130 28.80 3.67 36.35 3.85
2782 5423 4.804139 ACGAACATGTTTGATATCGTCCTC 59.196 41.667 28.80 4.22 36.35 3.71
2783 5424 5.043903 CGAACATGTTTGATATCGTCCTCT 58.956 41.667 19.51 0.00 0.00 3.69
2784 5425 5.520288 CGAACATGTTTGATATCGTCCTCTT 59.480 40.000 19.51 0.00 0.00 2.85
2785 5426 6.508563 CGAACATGTTTGATATCGTCCTCTTG 60.509 42.308 19.51 0.00 0.00 3.02
2786 5427 4.572389 ACATGTTTGATATCGTCCTCTTGC 59.428 41.667 0.00 0.00 0.00 4.01
2787 5428 3.531538 TGTTTGATATCGTCCTCTTGCC 58.468 45.455 0.00 0.00 0.00 4.52
2788 5429 3.055458 TGTTTGATATCGTCCTCTTGCCA 60.055 43.478 0.00 0.00 0.00 4.92
2789 5430 2.890808 TGATATCGTCCTCTTGCCAC 57.109 50.000 0.00 0.00 0.00 5.01
2790 5431 1.412710 TGATATCGTCCTCTTGCCACC 59.587 52.381 0.00 0.00 0.00 4.61
2791 5432 1.689273 GATATCGTCCTCTTGCCACCT 59.311 52.381 0.00 0.00 0.00 4.00
2792 5433 2.447408 TATCGTCCTCTTGCCACCTA 57.553 50.000 0.00 0.00 0.00 3.08
2793 5434 0.824759 ATCGTCCTCTTGCCACCTAC 59.175 55.000 0.00 0.00 0.00 3.18
2794 5435 0.251653 TCGTCCTCTTGCCACCTACT 60.252 55.000 0.00 0.00 0.00 2.57
2795 5436 0.108615 CGTCCTCTTGCCACCTACTG 60.109 60.000 0.00 0.00 0.00 2.74
2796 5437 0.391793 GTCCTCTTGCCACCTACTGC 60.392 60.000 0.00 0.00 0.00 4.40
2797 5438 1.078143 CCTCTTGCCACCTACTGCC 60.078 63.158 0.00 0.00 0.00 4.85
2798 5439 1.679311 CTCTTGCCACCTACTGCCA 59.321 57.895 0.00 0.00 0.00 4.92
2799 5440 0.392193 CTCTTGCCACCTACTGCCAG 60.392 60.000 0.00 0.00 0.00 4.85
2800 5441 2.034066 TTGCCACCTACTGCCAGC 59.966 61.111 0.00 0.00 0.00 4.85
2801 5442 3.899981 TTGCCACCTACTGCCAGCG 62.900 63.158 0.00 0.00 0.00 5.18
2803 5444 3.706373 CCACCTACTGCCAGCGGT 61.706 66.667 9.42 9.42 39.18 5.68
2804 5445 2.125512 CACCTACTGCCAGCGGTC 60.126 66.667 7.52 0.00 36.80 4.79
2805 5446 3.760035 ACCTACTGCCAGCGGTCG 61.760 66.667 7.52 1.41 36.80 4.79
2806 5447 4.514577 CCTACTGCCAGCGGTCGG 62.515 72.222 7.52 7.61 36.80 4.79
2807 5448 3.449227 CTACTGCCAGCGGTCGGA 61.449 66.667 7.52 0.00 36.80 4.55
2808 5449 3.701604 CTACTGCCAGCGGTCGGAC 62.702 68.421 7.52 0.00 36.80 4.79
2848 5765 5.074515 TGGGGAAAAAGAGGTATGTCTTCTT 59.925 40.000 0.00 0.00 42.90 2.52
2867 5784 0.476771 TGCGAAAGAAGACCCCCTTT 59.523 50.000 0.00 0.00 34.68 3.11
2868 5785 1.700739 TGCGAAAGAAGACCCCCTTTA 59.299 47.619 0.00 0.00 34.68 1.85
2876 5793 9.032624 CGAAAGAAGACCCCCTTTATATATAGA 57.967 37.037 2.08 0.00 34.68 1.98
2897 5814 6.399639 AGAACAAAAATCCAACCGTTATGT 57.600 33.333 0.00 0.00 0.00 2.29
2899 5816 7.364970 AGAACAAAAATCCAACCGTTATGTAC 58.635 34.615 0.00 0.00 0.00 2.90
2910 5827 2.671396 CCGTTATGTACTGGTTGTGCTC 59.329 50.000 0.00 0.00 32.31 4.26
2913 5830 5.165676 CGTTATGTACTGGTTGTGCTCTAA 58.834 41.667 0.00 0.00 32.31 2.10
2914 5831 5.288712 CGTTATGTACTGGTTGTGCTCTAAG 59.711 44.000 0.00 0.00 32.31 2.18
2915 5832 3.040147 TGTACTGGTTGTGCTCTAAGC 57.960 47.619 0.00 0.00 42.82 3.09
2916 5833 1.993370 GTACTGGTTGTGCTCTAAGCG 59.007 52.381 0.00 0.00 46.26 4.68
2917 5834 0.320771 ACTGGTTGTGCTCTAAGCGG 60.321 55.000 0.00 0.00 46.26 5.52
2918 5835 0.320771 CTGGTTGTGCTCTAAGCGGT 60.321 55.000 0.00 0.00 46.26 5.68
2919 5836 0.970640 TGGTTGTGCTCTAAGCGGTA 59.029 50.000 0.00 0.00 46.26 4.02
2920 5837 1.553248 TGGTTGTGCTCTAAGCGGTAT 59.447 47.619 0.00 0.00 46.26 2.73
2921 5838 2.027561 TGGTTGTGCTCTAAGCGGTATT 60.028 45.455 0.00 0.00 46.26 1.89
2922 5839 2.351726 GGTTGTGCTCTAAGCGGTATTG 59.648 50.000 0.00 0.00 46.26 1.90
2923 5840 1.651987 TGTGCTCTAAGCGGTATTGC 58.348 50.000 0.00 0.00 46.26 3.56
2924 5841 0.938008 GTGCTCTAAGCGGTATTGCC 59.062 55.000 0.00 0.00 46.26 4.52
2925 5842 0.830648 TGCTCTAAGCGGTATTGCCT 59.169 50.000 0.00 0.00 46.26 4.75
2926 5843 1.202533 TGCTCTAAGCGGTATTGCCTC 60.203 52.381 0.00 0.00 46.26 4.70
2927 5844 1.069358 GCTCTAAGCGGTATTGCCTCT 59.931 52.381 0.00 0.00 32.78 3.69
2928 5845 2.864489 GCTCTAAGCGGTATTGCCTCTC 60.864 54.545 0.00 0.00 29.45 3.20
2929 5846 1.337071 TCTAAGCGGTATTGCCTCTCG 59.663 52.381 0.00 0.00 29.45 4.04
2930 5847 0.387929 TAAGCGGTATTGCCTCTCGG 59.612 55.000 0.00 0.00 29.45 4.63
2931 5848 2.280186 GCGGTATTGCCTCTCGGG 60.280 66.667 0.00 0.00 38.36 5.14
2932 5849 2.792947 GCGGTATTGCCTCTCGGGA 61.793 63.158 0.00 0.00 37.23 5.14
2933 5850 1.364171 CGGTATTGCCTCTCGGGAG 59.636 63.158 4.93 4.93 39.18 4.30
2956 5873 2.919666 GGTACTACCGCTTAACACGA 57.080 50.000 0.00 0.00 0.00 4.35
2969 5888 4.548457 GCTTAACACGATAAAAGCGACAAC 59.452 41.667 0.00 0.00 35.47 3.32
2977 5896 2.101209 AAAAGCGACAACGAGCACCG 62.101 55.000 0.00 0.00 42.66 4.94
2979 5898 3.764049 GCGACAACGAGCACCGAC 61.764 66.667 5.53 0.00 42.66 4.79
2986 5905 1.389609 AACGAGCACCGACCCGATAT 61.390 55.000 5.53 0.00 41.76 1.63
2994 5913 3.770666 CACCGACCCGATATTAGCATAG 58.229 50.000 0.00 0.00 0.00 2.23
2997 5916 5.012239 ACCGACCCGATATTAGCATAGTAA 58.988 41.667 0.00 0.00 0.00 2.24
3001 5920 7.548075 CCGACCCGATATTAGCATAGTAATTTT 59.452 37.037 0.00 0.00 0.00 1.82
3005 5924 7.120579 CCCGATATTAGCATAGTAATTTTGCCA 59.879 37.037 0.00 0.00 37.07 4.92
3006 5925 8.177663 CCGATATTAGCATAGTAATTTTGCCAG 58.822 37.037 0.00 0.00 37.07 4.85
3010 5929 5.116084 AGCATAGTAATTTTGCCAGAGGA 57.884 39.130 0.00 0.00 37.07 3.71
3030 5949 3.585862 GAACATACAGAGAAACCAGCGA 58.414 45.455 0.00 0.00 0.00 4.93
3041 5960 2.989422 AACCAGCGATAGTTTTGCAC 57.011 45.000 0.00 0.00 37.17 4.57
3084 6003 3.498927 ACGAAGTGGTACCATCGTTAG 57.501 47.619 29.28 19.70 45.33 2.34
3116 6035 4.739716 GCACTACCGCAAATTATTTGATGG 59.260 41.667 20.37 20.35 43.26 3.51
3125 6044 5.694910 GCAAATTATTTGATGGCATCCAGAG 59.305 40.000 23.92 6.23 43.26 3.35
3142 6061 0.320697 GAGAAACCCACGGTAGTGCT 59.679 55.000 0.00 0.00 46.62 4.40
3143 6062 0.763035 AGAAACCCACGGTAGTGCTT 59.237 50.000 0.00 0.00 46.62 3.91
3172 6091 3.444742 TCTTCGCGGAAGTATCACCTAAA 59.555 43.478 6.13 0.00 40.24 1.85
3173 6092 3.155093 TCGCGGAAGTATCACCTAAAC 57.845 47.619 6.13 0.00 0.00 2.01
3195 6114 3.368013 CGGTACTATCACCAGTTGCAAGA 60.368 47.826 0.00 0.00 38.61 3.02
3204 6123 3.006967 CACCAGTTGCAAGAGGTACTACT 59.993 47.826 19.27 0.00 41.55 2.57
3226 6145 5.221843 ACTGTGATTTACCTGAAGCCTAACA 60.222 40.000 0.00 0.00 0.00 2.41
3237 6156 5.486526 CTGAAGCCTAACAGAGAACTCAAT 58.513 41.667 4.64 0.00 36.38 2.57
3271 6190 3.396260 GTACAACCAGCAGAAGTACCA 57.604 47.619 0.00 0.00 31.32 3.25
3278 6197 2.622436 CAGCAGAAGTACCACCTAAGC 58.378 52.381 0.00 0.00 0.00 3.09
3280 6199 1.203994 GCAGAAGTACCACCTAAGCGA 59.796 52.381 0.00 0.00 0.00 4.93
3312 6231 1.685224 CCTCTGCCAGTAAGCCCAA 59.315 57.895 0.00 0.00 0.00 4.12
3324 6243 0.675633 AAGCCCAATGCACAACAGAC 59.324 50.000 0.00 0.00 44.83 3.51
3333 6252 0.512952 GCACAACAGACGAATCGCTT 59.487 50.000 1.15 0.00 0.00 4.68
3338 6257 2.724977 ACAGACGAATCGCTTCAAGA 57.275 45.000 1.15 0.00 0.00 3.02
3355 6274 2.756760 CAAGATTGGGGAAGGACATGTG 59.243 50.000 1.15 0.00 0.00 3.21
3375 6294 5.750524 TGTGGGTGCATATAGTTTGTGTAT 58.249 37.500 0.00 0.00 0.00 2.29
3378 6297 5.588246 TGGGTGCATATAGTTTGTGTATGTG 59.412 40.000 0.00 0.00 33.74 3.21
3403 6322 6.381498 TGATTCCAACTATACCTTCCAACA 57.619 37.500 0.00 0.00 0.00 3.33
3404 6323 6.177610 TGATTCCAACTATACCTTCCAACAC 58.822 40.000 0.00 0.00 0.00 3.32
3406 6325 3.055675 TCCAACTATACCTTCCAACACGG 60.056 47.826 0.00 0.00 0.00 4.94
3431 6350 9.244292 GGAAACCCTCTTAATAGAACAGATTTT 57.756 33.333 0.00 0.00 0.00 1.82
3497 6416 6.170846 TCTTTACTCTTTCTTTCTTCGGGT 57.829 37.500 0.00 0.00 0.00 5.28
3501 6420 8.913487 TTTACTCTTTCTTTCTTCGGGTAATT 57.087 30.769 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.262335 GGAACAGAGGGAGTACTTTCGAAA 60.262 45.833 10.71 10.71 0.00 3.46
1 2 3.257624 GGAACAGAGGGAGTACTTTCGAA 59.742 47.826 0.00 0.00 0.00 3.71
2 3 2.824341 GGAACAGAGGGAGTACTTTCGA 59.176 50.000 0.00 0.00 0.00 3.71
3 4 2.826725 AGGAACAGAGGGAGTACTTTCG 59.173 50.000 0.00 0.00 0.00 3.46
4 5 5.997384 TTAGGAACAGAGGGAGTACTTTC 57.003 43.478 0.00 0.00 0.00 2.62
5 6 6.954352 ATTTAGGAACAGAGGGAGTACTTT 57.046 37.500 0.00 0.00 0.00 2.66
6 7 6.958192 TGTATTTAGGAACAGAGGGAGTACTT 59.042 38.462 0.00 0.00 0.00 2.24
7 8 6.500336 TGTATTTAGGAACAGAGGGAGTACT 58.500 40.000 0.00 0.00 0.00 2.73
8 9 6.786967 TGTATTTAGGAACAGAGGGAGTAC 57.213 41.667 0.00 0.00 0.00 2.73
9 10 6.958192 ACTTGTATTTAGGAACAGAGGGAGTA 59.042 38.462 0.00 0.00 0.00 2.59
10 11 5.785940 ACTTGTATTTAGGAACAGAGGGAGT 59.214 40.000 0.00 0.00 0.00 3.85
11 12 6.155393 AGACTTGTATTTAGGAACAGAGGGAG 59.845 42.308 0.00 0.00 0.00 4.30
12 13 6.023603 AGACTTGTATTTAGGAACAGAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
13 14 6.301169 AGACTTGTATTTAGGAACAGAGGG 57.699 41.667 0.00 0.00 0.00 4.30
14 15 8.097662 AGAAAGACTTGTATTTAGGAACAGAGG 58.902 37.037 0.00 0.00 0.00 3.69
29 30 8.624776 CCTTGTTGAATCTTTAGAAAGACTTGT 58.375 33.333 6.85 0.00 46.80 3.16
30 31 8.078596 CCCTTGTTGAATCTTTAGAAAGACTTG 58.921 37.037 6.85 0.00 46.80 3.16
31 32 7.998964 TCCCTTGTTGAATCTTTAGAAAGACTT 59.001 33.333 6.85 3.80 46.80 3.01
32 33 7.445707 GTCCCTTGTTGAATCTTTAGAAAGACT 59.554 37.037 6.85 0.00 46.80 3.24
33 34 7.445707 AGTCCCTTGTTGAATCTTTAGAAAGAC 59.554 37.037 6.85 0.00 46.80 3.01
35 36 7.751768 AGTCCCTTGTTGAATCTTTAGAAAG 57.248 36.000 0.00 0.00 37.36 2.62
36 37 8.215050 TGTAGTCCCTTGTTGAATCTTTAGAAA 58.785 33.333 0.00 0.00 0.00 2.52
37 38 7.741785 TGTAGTCCCTTGTTGAATCTTTAGAA 58.258 34.615 0.00 0.00 0.00 2.10
38 39 7.311092 TGTAGTCCCTTGTTGAATCTTTAGA 57.689 36.000 0.00 0.00 0.00 2.10
39 40 9.099454 GTATGTAGTCCCTTGTTGAATCTTTAG 57.901 37.037 0.00 0.00 0.00 1.85
40 41 7.762615 CGTATGTAGTCCCTTGTTGAATCTTTA 59.237 37.037 0.00 0.00 0.00 1.85
41 42 6.594159 CGTATGTAGTCCCTTGTTGAATCTTT 59.406 38.462 0.00 0.00 0.00 2.52
42 43 6.106673 CGTATGTAGTCCCTTGTTGAATCTT 58.893 40.000 0.00 0.00 0.00 2.40
43 44 5.395324 CCGTATGTAGTCCCTTGTTGAATCT 60.395 44.000 0.00 0.00 0.00 2.40
44 45 4.809426 CCGTATGTAGTCCCTTGTTGAATC 59.191 45.833 0.00 0.00 0.00 2.52
45 46 4.468510 TCCGTATGTAGTCCCTTGTTGAAT 59.531 41.667 0.00 0.00 0.00 2.57
46 47 3.833650 TCCGTATGTAGTCCCTTGTTGAA 59.166 43.478 0.00 0.00 0.00 2.69
47 48 3.433343 TCCGTATGTAGTCCCTTGTTGA 58.567 45.455 0.00 0.00 0.00 3.18
48 49 3.782046 CTCCGTATGTAGTCCCTTGTTG 58.218 50.000 0.00 0.00 0.00 3.33
49 50 2.167900 GCTCCGTATGTAGTCCCTTGTT 59.832 50.000 0.00 0.00 0.00 2.83
50 51 1.755380 GCTCCGTATGTAGTCCCTTGT 59.245 52.381 0.00 0.00 0.00 3.16
51 52 1.754803 TGCTCCGTATGTAGTCCCTTG 59.245 52.381 0.00 0.00 0.00 3.61
52 53 2.154567 TGCTCCGTATGTAGTCCCTT 57.845 50.000 0.00 0.00 0.00 3.95
53 54 2.154567 TTGCTCCGTATGTAGTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
54 55 2.973694 TTTGCTCCGTATGTAGTCCC 57.026 50.000 0.00 0.00 0.00 4.46
55 56 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
56 57 5.109903 ACTCATTTTGCTCCGTATGTAGTC 58.890 41.667 0.00 0.00 0.00 2.59
57 58 5.086104 ACTCATTTTGCTCCGTATGTAGT 57.914 39.130 0.00 0.00 0.00 2.73
58 59 7.534085 TTTACTCATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
59 60 7.985184 AGATTTACTCATTTTGCTCCGTATGTA 59.015 33.333 0.00 0.00 0.00 2.29
60 61 6.823689 AGATTTACTCATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
61 62 7.251704 AGATTTACTCATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
62 63 7.985184 TGTAGATTTACTCATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
63 64 7.277098 GTGTAGATTTACTCATTTTGCTCCGTA 59.723 37.037 0.00 0.00 0.00 4.02
64 65 6.092259 GTGTAGATTTACTCATTTTGCTCCGT 59.908 38.462 0.00 0.00 0.00 4.69
65 66 6.313905 AGTGTAGATTTACTCATTTTGCTCCG 59.686 38.462 0.00 0.00 0.00 4.63
66 67 7.550906 AGAGTGTAGATTTACTCATTTTGCTCC 59.449 37.037 7.09 0.00 44.41 4.70
67 68 8.485976 AGAGTGTAGATTTACTCATTTTGCTC 57.514 34.615 7.09 0.00 44.41 4.26
68 69 9.944376 TTAGAGTGTAGATTTACTCATTTTGCT 57.056 29.630 7.09 0.00 44.41 3.91
98 99 9.616634 CTACAACGTACGGATGTATATAAACAT 57.383 33.333 26.10 8.14 42.75 2.71
99 100 8.620416 ACTACAACGTACGGATGTATATAAACA 58.380 33.333 26.10 11.55 32.11 2.83
100 101 9.107367 GACTACAACGTACGGATGTATATAAAC 57.893 37.037 26.10 15.00 32.11 2.01
101 102 9.056005 AGACTACAACGTACGGATGTATATAAA 57.944 33.333 26.10 12.61 32.11 1.40
102 103 8.607441 AGACTACAACGTACGGATGTATATAA 57.393 34.615 26.10 13.13 32.11 0.98
103 104 9.875691 ATAGACTACAACGTACGGATGTATATA 57.124 33.333 26.10 20.40 32.11 0.86
104 105 8.783833 ATAGACTACAACGTACGGATGTATAT 57.216 34.615 26.10 20.18 32.11 0.86
105 106 8.607441 AATAGACTACAACGTACGGATGTATA 57.393 34.615 26.10 19.27 32.11 1.47
106 107 7.502120 AATAGACTACAACGTACGGATGTAT 57.498 36.000 26.10 19.09 32.11 2.29
107 108 6.925610 AATAGACTACAACGTACGGATGTA 57.074 37.500 25.02 25.02 0.00 2.29
108 109 5.824904 AATAGACTACAACGTACGGATGT 57.175 39.130 25.38 25.38 0.00 3.06
109 110 6.260377 TCAAATAGACTACAACGTACGGATG 58.740 40.000 21.06 19.40 0.00 3.51
110 111 6.441093 TCAAATAGACTACAACGTACGGAT 57.559 37.500 21.06 4.99 0.00 4.18
111 112 5.878332 TCAAATAGACTACAACGTACGGA 57.122 39.130 21.06 0.65 0.00 4.69
112 113 6.183360 GGTTTCAAATAGACTACAACGTACGG 60.183 42.308 21.06 5.00 0.00 4.02
113 114 6.583806 AGGTTTCAAATAGACTACAACGTACG 59.416 38.462 15.01 15.01 0.00 3.67
114 115 7.880059 AGGTTTCAAATAGACTACAACGTAC 57.120 36.000 0.00 0.00 0.00 3.67
115 116 8.891671 AAAGGTTTCAAATAGACTACAACGTA 57.108 30.769 0.00 0.00 0.00 3.57
116 117 7.797038 AAAGGTTTCAAATAGACTACAACGT 57.203 32.000 0.00 0.00 0.00 3.99
131 132 9.470399 AGGAAGTAAGTCTTTTTAAAGGTTTCA 57.530 29.630 2.63 0.00 36.40 2.69
132 133 9.947669 GAGGAAGTAAGTCTTTTTAAAGGTTTC 57.052 33.333 2.63 0.00 36.40 2.78
133 134 8.910944 GGAGGAAGTAAGTCTTTTTAAAGGTTT 58.089 33.333 2.63 1.34 36.40 3.27
134 135 8.280084 AGGAGGAAGTAAGTCTTTTTAAAGGTT 58.720 33.333 2.63 0.66 36.40 3.50
135 136 7.813331 AGGAGGAAGTAAGTCTTTTTAAAGGT 58.187 34.615 2.63 0.00 36.40 3.50
136 137 8.693120 AAGGAGGAAGTAAGTCTTTTTAAAGG 57.307 34.615 2.63 0.00 36.40 3.11
137 138 8.784994 GGAAGGAGGAAGTAAGTCTTTTTAAAG 58.215 37.037 0.00 0.00 36.40 1.85
138 139 8.276477 TGGAAGGAGGAAGTAAGTCTTTTTAAA 58.724 33.333 0.00 0.00 36.40 1.52
139 140 7.808218 TGGAAGGAGGAAGTAAGTCTTTTTAA 58.192 34.615 0.00 0.00 36.40 1.52
140 141 7.383156 TGGAAGGAGGAAGTAAGTCTTTTTA 57.617 36.000 0.00 0.00 36.40 1.52
141 142 6.262056 TGGAAGGAGGAAGTAAGTCTTTTT 57.738 37.500 0.00 0.00 36.40 1.94
142 143 5.906772 TGGAAGGAGGAAGTAAGTCTTTT 57.093 39.130 0.00 0.00 36.40 2.27
143 144 5.788014 AGATGGAAGGAGGAAGTAAGTCTTT 59.212 40.000 0.00 0.00 36.40 2.52
144 145 5.346270 AGATGGAAGGAGGAAGTAAGTCTT 58.654 41.667 0.00 0.00 39.32 3.01
145 146 4.954089 AGATGGAAGGAGGAAGTAAGTCT 58.046 43.478 0.00 0.00 0.00 3.24
146 147 6.987403 ATAGATGGAAGGAGGAAGTAAGTC 57.013 41.667 0.00 0.00 0.00 3.01
147 148 9.762381 CTATATAGATGGAAGGAGGAAGTAAGT 57.238 37.037 3.44 0.00 0.00 2.24
148 149 9.196139 CCTATATAGATGGAAGGAGGAAGTAAG 57.804 40.741 11.53 0.00 0.00 2.34
149 150 8.123130 CCCTATATAGATGGAAGGAGGAAGTAA 58.877 40.741 11.53 0.00 0.00 2.24
150 151 7.653503 CCCTATATAGATGGAAGGAGGAAGTA 58.346 42.308 11.53 0.00 0.00 2.24
151 152 6.507568 CCCTATATAGATGGAAGGAGGAAGT 58.492 44.000 11.53 0.00 0.00 3.01
152 153 5.365314 GCCCTATATAGATGGAAGGAGGAAG 59.635 48.000 11.53 0.00 0.00 3.46
153 154 5.281314 GCCCTATATAGATGGAAGGAGGAA 58.719 45.833 11.53 0.00 0.00 3.36
154 155 4.327010 GGCCCTATATAGATGGAAGGAGGA 60.327 50.000 11.53 0.00 0.00 3.71
155 156 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
156 157 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
157 158 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
158 159 6.617371 ACATTAGGCCCTATATAGATGGAAGG 59.383 42.308 11.53 3.94 0.00 3.46
159 160 7.126421 ACACATTAGGCCCTATATAGATGGAAG 59.874 40.741 11.53 3.88 0.00 3.46
160 161 6.965866 ACACATTAGGCCCTATATAGATGGAA 59.034 38.462 11.53 0.00 0.00 3.53
161 162 6.512120 ACACATTAGGCCCTATATAGATGGA 58.488 40.000 11.53 0.00 0.00 3.41
162 163 6.814954 ACACATTAGGCCCTATATAGATGG 57.185 41.667 11.53 6.04 0.00 3.51
163 164 9.520515 AAAAACACATTAGGCCCTATATAGATG 57.479 33.333 11.53 8.07 0.00 2.90
164 165 9.740710 GAAAAACACATTAGGCCCTATATAGAT 57.259 33.333 11.53 0.00 0.00 1.98
165 166 8.719596 TGAAAAACACATTAGGCCCTATATAGA 58.280 33.333 11.53 0.00 0.00 1.98
166 167 8.918202 TGAAAAACACATTAGGCCCTATATAG 57.082 34.615 0.00 2.46 0.00 1.31
167 168 9.349713 CTTGAAAAACACATTAGGCCCTATATA 57.650 33.333 0.00 0.00 0.00 0.86
168 169 8.058847 TCTTGAAAAACACATTAGGCCCTATAT 58.941 33.333 0.00 0.00 0.00 0.86
169 170 7.338449 GTCTTGAAAAACACATTAGGCCCTATA 59.662 37.037 0.00 0.00 0.00 1.31
170 171 6.152831 GTCTTGAAAAACACATTAGGCCCTAT 59.847 38.462 0.00 0.00 0.00 2.57
171 172 5.475564 GTCTTGAAAAACACATTAGGCCCTA 59.524 40.000 0.00 0.00 0.00 3.53
172 173 4.280929 GTCTTGAAAAACACATTAGGCCCT 59.719 41.667 0.00 0.00 0.00 5.19
173 174 4.556233 GTCTTGAAAAACACATTAGGCCC 58.444 43.478 0.00 0.00 0.00 5.80
174 175 4.556233 GGTCTTGAAAAACACATTAGGCC 58.444 43.478 0.00 0.00 0.00 5.19
175 176 4.226761 CGGTCTTGAAAAACACATTAGGC 58.773 43.478 0.00 0.00 0.00 3.93
176 177 4.226761 GCGGTCTTGAAAAACACATTAGG 58.773 43.478 0.00 0.00 0.00 2.69
177 178 4.023193 AGGCGGTCTTGAAAAACACATTAG 60.023 41.667 0.00 0.00 0.00 1.73
178 179 3.886505 AGGCGGTCTTGAAAAACACATTA 59.113 39.130 0.00 0.00 0.00 1.90
179 180 2.693074 AGGCGGTCTTGAAAAACACATT 59.307 40.909 0.00 0.00 0.00 2.71
180 181 2.306847 AGGCGGTCTTGAAAAACACAT 58.693 42.857 0.00 0.00 0.00 3.21
181 182 1.757682 AGGCGGTCTTGAAAAACACA 58.242 45.000 0.00 0.00 0.00 3.72
182 183 2.857748 CAAAGGCGGTCTTGAAAAACAC 59.142 45.455 0.00 0.00 35.55 3.32
183 184 2.755655 TCAAAGGCGGTCTTGAAAAACA 59.244 40.909 0.00 0.00 35.55 2.83
184 185 3.113322 GTCAAAGGCGGTCTTGAAAAAC 58.887 45.455 0.00 0.00 35.55 2.43
185 186 3.020984 AGTCAAAGGCGGTCTTGAAAAA 58.979 40.909 0.00 0.00 35.55 1.94
186 187 2.650322 AGTCAAAGGCGGTCTTGAAAA 58.350 42.857 0.00 0.00 35.55 2.29
187 188 2.341846 AGTCAAAGGCGGTCTTGAAA 57.658 45.000 0.00 0.00 35.55 2.69
188 189 3.695830 ATAGTCAAAGGCGGTCTTGAA 57.304 42.857 0.00 0.00 35.55 2.69
189 190 3.007506 TCAATAGTCAAAGGCGGTCTTGA 59.992 43.478 0.00 0.00 35.55 3.02
190 191 3.334691 TCAATAGTCAAAGGCGGTCTTG 58.665 45.455 0.00 0.00 35.55 3.02
191 192 3.695830 TCAATAGTCAAAGGCGGTCTT 57.304 42.857 0.00 0.00 37.28 3.01
192 193 3.914426 ATCAATAGTCAAAGGCGGTCT 57.086 42.857 0.00 0.00 0.00 3.85
193 194 5.234543 GTCTTATCAATAGTCAAAGGCGGTC 59.765 44.000 0.00 0.00 0.00 4.79
194 195 5.104900 AGTCTTATCAATAGTCAAAGGCGGT 60.105 40.000 0.00 0.00 0.00 5.68
195 196 5.360591 AGTCTTATCAATAGTCAAAGGCGG 58.639 41.667 0.00 0.00 0.00 6.13
196 197 8.594881 ATTAGTCTTATCAATAGTCAAAGGCG 57.405 34.615 0.00 0.00 0.00 5.52
258 259 2.669364 TCGTACGTGAAAGGAGCTTTC 58.331 47.619 16.05 0.00 46.88 2.62
259 260 2.806608 TCGTACGTGAAAGGAGCTTT 57.193 45.000 16.05 0.00 36.29 3.51
260 261 2.806608 TTCGTACGTGAAAGGAGCTT 57.193 45.000 16.05 0.00 0.00 3.74
261 262 3.314541 AATTCGTACGTGAAAGGAGCT 57.685 42.857 16.05 0.00 0.00 4.09
262 263 3.430895 TCAAATTCGTACGTGAAAGGAGC 59.569 43.478 16.05 0.00 0.00 4.70
263 264 5.347635 TCATCAAATTCGTACGTGAAAGGAG 59.652 40.000 16.05 1.92 0.00 3.69
264 265 5.231702 TCATCAAATTCGTACGTGAAAGGA 58.768 37.500 16.05 7.82 0.00 3.36
265 266 5.524511 TCATCAAATTCGTACGTGAAAGG 57.475 39.130 16.05 6.14 0.00 3.11
266 267 6.462636 CACATCATCAAATTCGTACGTGAAAG 59.537 38.462 16.05 8.72 0.00 2.62
267 268 6.303370 CACATCATCAAATTCGTACGTGAAA 58.697 36.000 16.05 2.41 0.00 2.69
268 269 5.670094 GCACATCATCAAATTCGTACGTGAA 60.670 40.000 16.05 3.23 0.00 3.18
269 270 4.201676 GCACATCATCAAATTCGTACGTGA 60.202 41.667 16.05 11.86 0.00 4.35
270 271 4.021822 GCACATCATCAAATTCGTACGTG 58.978 43.478 16.05 6.20 0.00 4.49
271 272 3.932710 AGCACATCATCAAATTCGTACGT 59.067 39.130 16.05 0.00 0.00 3.57
272 273 4.520743 AGCACATCATCAAATTCGTACG 57.479 40.909 9.53 9.53 0.00 3.67
273 274 6.032775 CACAAAGCACATCATCAAATTCGTAC 59.967 38.462 0.00 0.00 0.00 3.67
274 275 6.085573 CACAAAGCACATCATCAAATTCGTA 58.914 36.000 0.00 0.00 0.00 3.43
275 276 4.919168 CACAAAGCACATCATCAAATTCGT 59.081 37.500 0.00 0.00 0.00 3.85
276 277 4.919168 ACACAAAGCACATCATCAAATTCG 59.081 37.500 0.00 0.00 0.00 3.34
277 278 7.596248 AGTTACACAAAGCACATCATCAAATTC 59.404 33.333 0.00 0.00 0.00 2.17
278 279 7.436118 AGTTACACAAAGCACATCATCAAATT 58.564 30.769 0.00 0.00 0.00 1.82
279 280 6.985117 AGTTACACAAAGCACATCATCAAAT 58.015 32.000 0.00 0.00 0.00 2.32
280 281 6.389830 AGTTACACAAAGCACATCATCAAA 57.610 33.333 0.00 0.00 0.00 2.69
281 282 6.207928 CAAGTTACACAAAGCACATCATCAA 58.792 36.000 0.00 0.00 0.00 2.57
282 283 5.761003 CAAGTTACACAAAGCACATCATCA 58.239 37.500 0.00 0.00 0.00 3.07
283 284 4.618489 GCAAGTTACACAAAGCACATCATC 59.382 41.667 0.00 0.00 0.00 2.92
284 285 4.037803 TGCAAGTTACACAAAGCACATCAT 59.962 37.500 0.00 0.00 0.00 2.45
285 286 3.379688 TGCAAGTTACACAAAGCACATCA 59.620 39.130 0.00 0.00 0.00 3.07
286 287 3.963665 TGCAAGTTACACAAAGCACATC 58.036 40.909 0.00 0.00 0.00 3.06
287 288 4.202141 ACATGCAAGTTACACAAAGCACAT 60.202 37.500 0.00 0.00 34.54 3.21
288 289 3.130164 ACATGCAAGTTACACAAAGCACA 59.870 39.130 0.00 0.00 34.54 4.57
289 290 3.705604 ACATGCAAGTTACACAAAGCAC 58.294 40.909 0.00 0.00 34.54 4.40
290 291 3.379688 TGACATGCAAGTTACACAAAGCA 59.620 39.130 0.00 0.00 36.34 3.91
291 292 3.963665 TGACATGCAAGTTACACAAAGC 58.036 40.909 0.00 0.00 0.00 3.51
316 317 9.243105 ACTTTGACCAAGTGTTATAGCAATAAT 57.757 29.630 0.00 0.00 44.70 1.28
317 318 8.630054 ACTTTGACCAAGTGTTATAGCAATAA 57.370 30.769 0.00 0.00 44.70 1.40
318 319 8.630054 AACTTTGACCAAGTGTTATAGCAATA 57.370 30.769 0.00 0.00 45.77 1.90
319 320 7.524717 AACTTTGACCAAGTGTTATAGCAAT 57.475 32.000 0.00 0.00 45.77 3.56
320 321 6.952773 AACTTTGACCAAGTGTTATAGCAA 57.047 33.333 0.00 0.00 45.77 3.91
321 322 7.040961 GGTTAACTTTGACCAAGTGTTATAGCA 60.041 37.037 5.42 0.00 45.77 3.49
322 323 7.174426 AGGTTAACTTTGACCAAGTGTTATAGC 59.826 37.037 5.42 9.72 45.77 2.97
323 324 8.617290 AGGTTAACTTTGACCAAGTGTTATAG 57.383 34.615 5.42 0.00 45.77 1.31
324 325 7.385752 CGAGGTTAACTTTGACCAAGTGTTATA 59.614 37.037 5.42 0.00 45.77 0.98
325 326 6.204108 CGAGGTTAACTTTGACCAAGTGTTAT 59.796 38.462 5.42 0.00 45.77 1.89
326 327 5.524646 CGAGGTTAACTTTGACCAAGTGTTA 59.475 40.000 5.42 0.00 45.77 2.41
327 328 4.334481 CGAGGTTAACTTTGACCAAGTGTT 59.666 41.667 5.42 0.00 45.77 3.32
328 329 3.875134 CGAGGTTAACTTTGACCAAGTGT 59.125 43.478 5.42 0.00 45.77 3.55
329 330 4.124238 TCGAGGTTAACTTTGACCAAGTG 58.876 43.478 5.42 0.00 45.77 3.16
331 332 5.744666 TTTCGAGGTTAACTTTGACCAAG 57.255 39.130 7.15 0.00 39.14 3.61
332 333 6.324042 GTTTTTCGAGGTTAACTTTGACCAA 58.676 36.000 7.15 1.78 39.14 3.67
333 334 5.447548 CGTTTTTCGAGGTTAACTTTGACCA 60.448 40.000 7.15 0.00 39.14 4.02
334 335 4.965762 CGTTTTTCGAGGTTAACTTTGACC 59.034 41.667 7.15 0.00 42.86 4.02
335 336 5.798910 TCGTTTTTCGAGGTTAACTTTGAC 58.201 37.500 7.15 0.00 44.01 3.18
349 350 7.318141 TCTATATAGGGCCTAATCGTTTTTCG 58.682 38.462 18.91 0.00 41.41 3.46
350 351 9.099454 CATCTATATAGGGCCTAATCGTTTTTC 57.901 37.037 18.91 0.00 0.00 2.29
351 352 8.047310 CCATCTATATAGGGCCTAATCGTTTTT 58.953 37.037 18.91 0.30 0.00 1.94
352 353 7.402071 TCCATCTATATAGGGCCTAATCGTTTT 59.598 37.037 18.91 1.12 0.00 2.43
353 354 6.901300 TCCATCTATATAGGGCCTAATCGTTT 59.099 38.462 18.91 1.94 0.00 3.60
354 355 6.441222 TCCATCTATATAGGGCCTAATCGTT 58.559 40.000 18.91 2.76 0.00 3.85
355 356 6.027025 TCCATCTATATAGGGCCTAATCGT 57.973 41.667 18.91 3.18 0.00 3.73
356 357 6.015010 CCTTCCATCTATATAGGGCCTAATCG 60.015 46.154 18.91 8.75 0.00 3.34
357 358 7.076446 TCCTTCCATCTATATAGGGCCTAATC 58.924 42.308 18.91 0.00 0.00 1.75
358 359 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
359 360 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
360 361 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
361 362 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
362 363 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
363 364 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
364 365 4.561752 CCCCTCCTTCCATCTATATAGGG 58.438 52.174 9.89 4.49 41.81 3.53
365 366 4.015163 ACCCCCTCCTTCCATCTATATAGG 60.015 50.000 9.89 0.00 0.00 2.57
366 367 5.227917 ACCCCCTCCTTCCATCTATATAG 57.772 47.826 3.10 3.10 0.00 1.31
367 368 6.963154 ATACCCCCTCCTTCCATCTATATA 57.037 41.667 0.00 0.00 0.00 0.86
368 369 5.858532 ATACCCCCTCCTTCCATCTATAT 57.141 43.478 0.00 0.00 0.00 0.86
369 370 6.963154 ATATACCCCCTCCTTCCATCTATA 57.037 41.667 0.00 0.00 0.00 1.31
370 371 5.858532 ATATACCCCCTCCTTCCATCTAT 57.141 43.478 0.00 0.00 0.00 1.98
371 372 5.650167 AATATACCCCCTCCTTCCATCTA 57.350 43.478 0.00 0.00 0.00 1.98
372 373 4.526991 AATATACCCCCTCCTTCCATCT 57.473 45.455 0.00 0.00 0.00 2.90
373 374 5.191921 CCTAAATATACCCCCTCCTTCCATC 59.808 48.000 0.00 0.00 0.00 3.51
374 375 5.108752 CCTAAATATACCCCCTCCTTCCAT 58.891 45.833 0.00 0.00 0.00 3.41
375 376 4.175268 TCCTAAATATACCCCCTCCTTCCA 59.825 45.833 0.00 0.00 0.00 3.53
376 377 4.771338 TCCTAAATATACCCCCTCCTTCC 58.229 47.826 0.00 0.00 0.00 3.46
377 378 6.971932 ATTCCTAAATATACCCCCTCCTTC 57.028 41.667 0.00 0.00 0.00 3.46
378 379 7.797298 TCTATTCCTAAATATACCCCCTCCTT 58.203 38.462 0.00 0.00 0.00 3.36
379 380 7.386015 TCTATTCCTAAATATACCCCCTCCT 57.614 40.000 0.00 0.00 0.00 3.69
380 381 6.616137 CCTCTATTCCTAAATATACCCCCTCC 59.384 46.154 0.00 0.00 0.00 4.30
381 382 6.616137 CCCTCTATTCCTAAATATACCCCCTC 59.384 46.154 0.00 0.00 0.00 4.30
382 383 6.284557 TCCCTCTATTCCTAAATATACCCCCT 59.715 42.308 0.00 0.00 0.00 4.79
383 384 6.518534 TCCCTCTATTCCTAAATATACCCCC 58.481 44.000 0.00 0.00 0.00 5.40
384 385 7.197616 ACTCCCTCTATTCCTAAATATACCCC 58.802 42.308 0.00 0.00 0.00 4.95
385 386 9.779951 TTACTCCCTCTATTCCTAAATATACCC 57.220 37.037 0.00 0.00 0.00 3.69
390 391 9.091220 GCTTCTTACTCCCTCTATTCCTAAATA 57.909 37.037 0.00 0.00 0.00 1.40
391 392 7.569111 TGCTTCTTACTCCCTCTATTCCTAAAT 59.431 37.037 0.00 0.00 0.00 1.40
392 393 6.901300 TGCTTCTTACTCCCTCTATTCCTAAA 59.099 38.462 0.00 0.00 0.00 1.85
393 394 6.441222 TGCTTCTTACTCCCTCTATTCCTAA 58.559 40.000 0.00 0.00 0.00 2.69
394 395 6.027025 TGCTTCTTACTCCCTCTATTCCTA 57.973 41.667 0.00 0.00 0.00 2.94
395 396 4.884961 TGCTTCTTACTCCCTCTATTCCT 58.115 43.478 0.00 0.00 0.00 3.36
396 397 5.615925 TTGCTTCTTACTCCCTCTATTCC 57.384 43.478 0.00 0.00 0.00 3.01
397 398 6.704050 GTGATTGCTTCTTACTCCCTCTATTC 59.296 42.308 0.00 0.00 0.00 1.75
398 399 6.408662 GGTGATTGCTTCTTACTCCCTCTATT 60.409 42.308 0.00 0.00 0.00 1.73
399 400 5.071115 GGTGATTGCTTCTTACTCCCTCTAT 59.929 44.000 0.00 0.00 0.00 1.98
400 401 4.406003 GGTGATTGCTTCTTACTCCCTCTA 59.594 45.833 0.00 0.00 0.00 2.43
401 402 3.198853 GGTGATTGCTTCTTACTCCCTCT 59.801 47.826 0.00 0.00 0.00 3.69
402 403 3.536570 GGTGATTGCTTCTTACTCCCTC 58.463 50.000 0.00 0.00 0.00 4.30
403 404 2.239907 GGGTGATTGCTTCTTACTCCCT 59.760 50.000 0.00 0.00 0.00 4.20
404 405 2.644676 GGGTGATTGCTTCTTACTCCC 58.355 52.381 0.00 0.00 0.00 4.30
405 406 2.239907 AGGGGTGATTGCTTCTTACTCC 59.760 50.000 0.00 0.00 31.96 3.85
406 407 3.636153 AGGGGTGATTGCTTCTTACTC 57.364 47.619 0.00 0.00 0.00 2.59
407 408 5.514500 TTAAGGGGTGATTGCTTCTTACT 57.486 39.130 0.00 0.00 0.00 2.24
408 409 6.775594 ATTTAAGGGGTGATTGCTTCTTAC 57.224 37.500 0.00 0.00 0.00 2.34
410 411 7.978099 ATTATTTAAGGGGTGATTGCTTCTT 57.022 32.000 0.00 0.00 0.00 2.52
411 412 7.725844 CCTATTATTTAAGGGGTGATTGCTTCT 59.274 37.037 0.00 0.00 0.00 2.85
412 413 7.505923 ACCTATTATTTAAGGGGTGATTGCTTC 59.494 37.037 0.00 0.00 37.18 3.86
413 414 7.362234 ACCTATTATTTAAGGGGTGATTGCTT 58.638 34.615 0.00 0.00 37.18 3.91
414 415 6.922540 ACCTATTATTTAAGGGGTGATTGCT 58.077 36.000 0.00 0.00 37.18 3.91
415 416 8.879427 ATACCTATTATTTAAGGGGTGATTGC 57.121 34.615 0.00 0.00 37.18 3.56
418 419 9.869574 ACCTATACCTATTATTTAAGGGGTGAT 57.130 33.333 0.00 0.00 37.18 3.06
435 436 8.936764 AGATGACCTAGTCTATACCTATACCT 57.063 38.462 0.00 0.00 33.15 3.08
437 438 9.768662 GCTAGATGACCTAGTCTATACCTATAC 57.231 40.741 0.00 0.00 45.26 1.47
438 439 8.640651 CGCTAGATGACCTAGTCTATACCTATA 58.359 40.741 0.00 0.00 45.26 1.31
439 440 7.345132 TCGCTAGATGACCTAGTCTATACCTAT 59.655 40.741 0.00 0.00 45.26 2.57
440 441 6.666980 TCGCTAGATGACCTAGTCTATACCTA 59.333 42.308 0.00 0.00 45.26 3.08
441 442 5.484644 TCGCTAGATGACCTAGTCTATACCT 59.515 44.000 0.00 0.00 45.26 3.08
442 443 5.732633 TCGCTAGATGACCTAGTCTATACC 58.267 45.833 0.00 0.00 45.26 2.73
443 444 7.549842 TCAATCGCTAGATGACCTAGTCTATAC 59.450 40.741 0.00 0.00 45.26 1.47
444 445 7.621796 TCAATCGCTAGATGACCTAGTCTATA 58.378 38.462 0.00 0.00 45.26 1.31
445 446 6.477253 TCAATCGCTAGATGACCTAGTCTAT 58.523 40.000 0.00 0.00 45.26 1.98
446 447 5.866207 TCAATCGCTAGATGACCTAGTCTA 58.134 41.667 0.00 0.00 45.26 2.59
447 448 4.720046 TCAATCGCTAGATGACCTAGTCT 58.280 43.478 0.00 0.00 45.26 3.24
448 449 5.637006 ATCAATCGCTAGATGACCTAGTC 57.363 43.478 0.00 0.00 45.26 2.59
449 450 6.412362 AAATCAATCGCTAGATGACCTAGT 57.588 37.500 0.00 0.00 45.26 2.57
450 451 7.721286 AAAAATCAATCGCTAGATGACCTAG 57.279 36.000 0.00 0.00 46.05 3.02
474 475 5.597594 GGTACTCTAGCTCTAGCCCTAAAAA 59.402 44.000 0.00 0.00 43.38 1.94
475 476 5.139001 GGTACTCTAGCTCTAGCCCTAAAA 58.861 45.833 0.00 0.00 43.38 1.52
476 477 4.727677 GGTACTCTAGCTCTAGCCCTAAA 58.272 47.826 0.00 0.00 43.38 1.85
477 478 3.244491 CGGTACTCTAGCTCTAGCCCTAA 60.244 52.174 0.00 0.00 43.38 2.69
478 479 2.302445 CGGTACTCTAGCTCTAGCCCTA 59.698 54.545 0.00 0.00 43.38 3.53
479 480 1.072648 CGGTACTCTAGCTCTAGCCCT 59.927 57.143 0.00 0.00 43.38 5.19
480 481 1.525941 CGGTACTCTAGCTCTAGCCC 58.474 60.000 0.00 0.00 43.38 5.19
481 482 1.202794 ACCGGTACTCTAGCTCTAGCC 60.203 57.143 4.49 0.00 43.38 3.93
482 483 1.874872 CACCGGTACTCTAGCTCTAGC 59.125 57.143 6.87 0.00 42.49 3.42
483 484 2.496111 CCACCGGTACTCTAGCTCTAG 58.504 57.143 6.87 0.00 34.56 2.43
484 485 1.476471 GCCACCGGTACTCTAGCTCTA 60.476 57.143 6.87 0.00 0.00 2.43
485 486 0.752376 GCCACCGGTACTCTAGCTCT 60.752 60.000 6.87 0.00 0.00 4.09
486 487 0.752376 AGCCACCGGTACTCTAGCTC 60.752 60.000 6.87 0.00 0.00 4.09
487 488 1.038130 CAGCCACCGGTACTCTAGCT 61.038 60.000 6.87 6.17 0.00 3.32
488 489 1.437986 CAGCCACCGGTACTCTAGC 59.562 63.158 6.87 3.62 0.00 3.42
489 490 1.437986 GCAGCCACCGGTACTCTAG 59.562 63.158 6.87 0.00 0.00 2.43
490 491 2.056223 GGCAGCCACCGGTACTCTA 61.056 63.158 6.87 0.00 0.00 2.43
491 492 3.391382 GGCAGCCACCGGTACTCT 61.391 66.667 6.87 0.94 0.00 3.24
492 493 4.468689 GGGCAGCCACCGGTACTC 62.469 72.222 15.19 0.00 0.00 2.59
494 495 4.778143 CTGGGCAGCCACCGGTAC 62.778 72.222 15.19 1.82 0.00 3.34
506 507 1.878522 CGCGATACTCACACTGGGC 60.879 63.158 0.00 0.00 0.00 5.36
509 510 1.698165 ACAACGCGATACTCACACTG 58.302 50.000 15.93 0.00 0.00 3.66
514 515 1.017177 GCCCAACAACGCGATACTCA 61.017 55.000 15.93 0.00 0.00 3.41
643 2977 4.699522 GGGCCTGCGGAGAACGTT 62.700 66.667 5.10 0.00 46.52 3.99
658 2992 2.672996 CTGTTGTTCGCCAGGGGG 60.673 66.667 3.14 0.00 37.18 5.40
765 3104 8.974060 ACTTCCTATTGAGTTCAAAAACTACA 57.026 30.769 0.00 0.00 45.80 2.74
774 3121 7.450634 ACAGTACTGTACTTCCTATTGAGTTCA 59.549 37.037 26.91 0.00 42.90 3.18
862 3209 4.016444 TGCAGGCTATTTTCCTTTACCAG 58.984 43.478 0.00 0.00 0.00 4.00
884 3231 2.046314 CAAACCCGGTCGATGCCT 60.046 61.111 0.00 0.00 0.00 4.75
897 3244 0.534203 TCGAGCACCTTGACCCAAAC 60.534 55.000 0.00 0.00 0.00 2.93
903 3250 6.809196 CCTCTATTTATATCGAGCACCTTGAC 59.191 42.308 0.00 0.00 0.00 3.18
911 3258 4.202172 GCTCCCCCTCTATTTATATCGAGC 60.202 50.000 0.00 0.00 33.07 5.03
943 3290 5.976458 ACAAGCTTCTTGTTTTGATTTGGA 58.024 33.333 6.40 0.00 0.00 3.53
1084 3437 1.010574 CGAGGAGAGATGCGACGAC 60.011 63.158 0.00 0.00 0.00 4.34
1188 3541 4.688419 TCGACGTCGACAACCGCC 62.688 66.667 34.97 0.00 44.22 6.13
1236 3589 1.812093 TGGGAATAAAGTCGCCGCG 60.812 57.895 6.39 6.39 0.00 6.46
1254 3607 1.080705 CGCGACGAGGAAGAAAGGT 60.081 57.895 0.00 0.00 0.00 3.50
1344 3697 2.054232 TGGCTTTTAAACACGTCCCA 57.946 45.000 0.00 0.00 0.00 4.37
1512 3866 2.901839 TGGAAAAGTCCTACTAACCGCT 59.098 45.455 0.00 0.00 45.22 5.52
1518 3872 3.896888 TCACCGTTGGAAAAGTCCTACTA 59.103 43.478 5.93 0.00 44.70 1.82
1521 3875 3.558321 CCATCACCGTTGGAAAAGTCCTA 60.558 47.826 0.00 0.00 45.22 2.94
1563 3917 1.689352 CCGCGTCGAACCCAACATAC 61.689 60.000 4.92 0.00 0.00 2.39
1566 3920 4.224274 ACCGCGTCGAACCCAACA 62.224 61.111 4.92 0.00 0.00 3.33
1665 4019 3.153369 TGCTTTAGCCCATCAACAAGA 57.847 42.857 0.00 0.00 41.18 3.02
1669 4023 2.671070 CGGTTTGCTTTAGCCCATCAAC 60.671 50.000 0.00 0.00 41.18 3.18
1671 4025 1.173043 CGGTTTGCTTTAGCCCATCA 58.827 50.000 0.00 0.00 41.18 3.07
1698 4052 2.228138 TCGGGTAATGGCACGTATTC 57.772 50.000 0.00 0.00 36.53 1.75
1803 4157 1.512996 GGACGATGGCGAGGACGATA 61.513 60.000 0.00 0.00 42.66 2.92
1816 4170 1.524008 TAGATGGCGATGCGGACGAT 61.524 55.000 0.00 0.00 0.00 3.73
2528 5145 3.580895 ACCCAAAACCAACACTTCACTTT 59.419 39.130 0.00 0.00 0.00 2.66
2535 5152 8.715190 AACTAAATATACCCAAAACCAACACT 57.285 30.769 0.00 0.00 0.00 3.55
2753 5370 7.356540 ACGATATCAAACATGTTCGTTTTTCA 58.643 30.769 12.39 0.00 36.98 2.69
2754 5371 7.007099 GGACGATATCAAACATGTTCGTTTTTC 59.993 37.037 18.85 8.69 39.63 2.29
2757 5398 5.642063 AGGACGATATCAAACATGTTCGTTT 59.358 36.000 18.85 10.18 39.63 3.60
2774 5415 0.824759 GTAGGTGGCAAGAGGACGAT 59.175 55.000 0.00 0.00 0.00 3.73
2775 5416 0.251653 AGTAGGTGGCAAGAGGACGA 60.252 55.000 0.00 0.00 0.00 4.20
2776 5417 0.108615 CAGTAGGTGGCAAGAGGACG 60.109 60.000 0.00 0.00 0.00 4.79
2777 5418 0.391793 GCAGTAGGTGGCAAGAGGAC 60.392 60.000 0.00 0.00 0.00 3.85
2778 5419 1.983224 GCAGTAGGTGGCAAGAGGA 59.017 57.895 0.00 0.00 0.00 3.71
2779 5420 4.625800 GCAGTAGGTGGCAAGAGG 57.374 61.111 0.00 0.00 0.00 3.69
2786 5427 3.665675 GACCGCTGGCAGTAGGTGG 62.666 68.421 31.20 18.96 37.07 4.61
2787 5428 2.125512 GACCGCTGGCAGTAGGTG 60.126 66.667 31.20 13.34 37.07 4.00
2788 5429 3.760035 CGACCGCTGGCAGTAGGT 61.760 66.667 28.13 28.13 40.11 3.08
2789 5430 4.514577 CCGACCGCTGGCAGTAGG 62.515 72.222 23.23 23.23 0.00 3.18
2790 5431 3.449227 TCCGACCGCTGGCAGTAG 61.449 66.667 17.16 10.26 0.00 2.57
2791 5432 3.755628 GTCCGACCGCTGGCAGTA 61.756 66.667 17.16 0.00 0.00 2.74
2809 5450 1.930520 CCCATTCCTACCAAGGGGG 59.069 63.158 0.00 0.00 42.74 5.40
2811 5452 1.304891 TTCCCCATTCCTACCAAGGG 58.695 55.000 0.00 0.00 43.84 3.95
2812 5453 3.466395 TTTTCCCCATTCCTACCAAGG 57.534 47.619 0.00 0.00 45.21 3.61
2813 5454 4.672899 TCTTTTTCCCCATTCCTACCAAG 58.327 43.478 0.00 0.00 0.00 3.61
2814 5455 4.510205 CCTCTTTTTCCCCATTCCTACCAA 60.510 45.833 0.00 0.00 0.00 3.67
2815 5456 3.011257 CCTCTTTTTCCCCATTCCTACCA 59.989 47.826 0.00 0.00 0.00 3.25
2816 5457 3.011369 ACCTCTTTTTCCCCATTCCTACC 59.989 47.826 0.00 0.00 0.00 3.18
2817 5458 4.317530 ACCTCTTTTTCCCCATTCCTAC 57.682 45.455 0.00 0.00 0.00 3.18
2818 5459 5.494706 ACATACCTCTTTTTCCCCATTCCTA 59.505 40.000 0.00 0.00 0.00 2.94
2819 5460 4.294970 ACATACCTCTTTTTCCCCATTCCT 59.705 41.667 0.00 0.00 0.00 3.36
2820 5461 4.610333 ACATACCTCTTTTTCCCCATTCC 58.390 43.478 0.00 0.00 0.00 3.01
2821 5462 5.510430 AGACATACCTCTTTTTCCCCATTC 58.490 41.667 0.00 0.00 0.00 2.67
2822 5463 5.536497 AGACATACCTCTTTTTCCCCATT 57.464 39.130 0.00 0.00 0.00 3.16
2823 5464 5.254032 AGAAGACATACCTCTTTTTCCCCAT 59.746 40.000 0.00 0.00 30.21 4.00
2824 5465 4.601857 AGAAGACATACCTCTTTTTCCCCA 59.398 41.667 0.00 0.00 30.21 4.96
2825 5466 5.180810 AGAAGACATACCTCTTTTTCCCC 57.819 43.478 0.00 0.00 30.21 4.81
2848 5765 0.476771 AAAGGGGGTCTTCTTTCGCA 59.523 50.000 0.00 0.00 33.94 5.10
2876 5793 7.142680 CAGTACATAACGGTTGGATTTTTGTT 58.857 34.615 3.07 0.00 0.00 2.83
2897 5814 1.067142 CCGCTTAGAGCACAACCAGTA 60.067 52.381 0.50 0.00 42.58 2.74
2899 5816 0.320771 ACCGCTTAGAGCACAACCAG 60.321 55.000 0.50 0.00 42.58 4.00
2925 5842 0.179062 GTAGTACCGCTCTCCCGAGA 60.179 60.000 0.00 0.00 39.74 4.04
2926 5843 1.165284 GGTAGTACCGCTCTCCCGAG 61.165 65.000 2.90 0.00 40.35 4.63
2927 5844 1.153086 GGTAGTACCGCTCTCCCGA 60.153 63.158 2.90 0.00 0.00 5.14
2928 5845 3.429925 GGTAGTACCGCTCTCCCG 58.570 66.667 2.90 0.00 0.00 5.14
2951 5868 2.396601 TCGTTGTCGCTTTTATCGTGT 58.603 42.857 0.00 0.00 36.96 4.49
2956 5873 1.463444 GGTGCTCGTTGTCGCTTTTAT 59.537 47.619 0.00 0.00 36.96 1.40
2969 5888 0.594602 TAATATCGGGTCGGTGCTCG 59.405 55.000 0.00 0.00 40.90 5.03
2977 5896 8.175716 GCAAAATTACTATGCTAATATCGGGTC 58.824 37.037 0.00 0.00 37.12 4.46
2979 5898 7.120579 TGGCAAAATTACTATGCTAATATCGGG 59.879 37.037 0.00 0.00 39.94 5.14
2986 5905 6.658849 TCCTCTGGCAAAATTACTATGCTAA 58.341 36.000 0.00 0.00 39.94 3.09
2994 5913 6.374333 TCTGTATGTTCCTCTGGCAAAATTAC 59.626 38.462 0.00 0.00 0.00 1.89
2997 5916 4.922206 TCTGTATGTTCCTCTGGCAAAAT 58.078 39.130 0.00 0.00 0.00 1.82
3001 5920 2.820178 TCTCTGTATGTTCCTCTGGCA 58.180 47.619 0.00 0.00 0.00 4.92
3005 5924 4.323104 GCTGGTTTCTCTGTATGTTCCTCT 60.323 45.833 0.00 0.00 0.00 3.69
3006 5925 3.935828 GCTGGTTTCTCTGTATGTTCCTC 59.064 47.826 0.00 0.00 0.00 3.71
3010 5929 3.678056 TCGCTGGTTTCTCTGTATGTT 57.322 42.857 0.00 0.00 0.00 2.71
3030 5949 3.067106 CTCTGGTGTCGTGCAAAACTAT 58.933 45.455 0.00 0.00 0.00 2.12
3041 5960 0.456312 GTACTTCCGCTCTGGTGTCG 60.456 60.000 0.00 0.00 39.52 4.35
3066 5985 2.928116 GCACTAACGATGGTACCACTTC 59.072 50.000 19.09 11.29 0.00 3.01
3070 5989 2.100252 GCTAGCACTAACGATGGTACCA 59.900 50.000 18.99 18.99 0.00 3.25
3072 5991 2.382519 CGCTAGCACTAACGATGGTAC 58.617 52.381 16.45 0.00 0.00 3.34
3076 5995 2.217112 GCCGCTAGCACTAACGATG 58.783 57.895 16.45 0.00 42.97 3.84
3111 6030 1.064463 GGGTTTCTCTGGATGCCATCA 60.064 52.381 7.06 0.00 30.82 3.07
3116 6035 1.026718 CCGTGGGTTTCTCTGGATGC 61.027 60.000 0.00 0.00 0.00 3.91
3125 6044 0.872388 CAAGCACTACCGTGGGTTTC 59.128 55.000 0.00 0.00 41.51 2.78
3155 6074 2.199236 CCGTTTAGGTGATACTTCCGC 58.801 52.381 0.00 0.00 34.51 5.54
3172 6091 1.897133 TGCAACTGGTGATAGTACCGT 59.103 47.619 0.00 0.00 43.87 4.83
3173 6092 2.665649 TGCAACTGGTGATAGTACCG 57.334 50.000 0.00 0.00 43.87 4.02
3195 6114 6.351117 GCTTCAGGTAAATCACAGTAGTACCT 60.351 42.308 0.00 0.00 44.27 3.08
3204 6123 5.012664 TCTGTTAGGCTTCAGGTAAATCACA 59.987 40.000 15.71 0.00 33.13 3.58
3226 6145 4.096682 GCGACTACTACCATTGAGTTCTCT 59.903 45.833 1.53 0.00 0.00 3.10
3237 6156 1.468520 GTTGTACCGCGACTACTACCA 59.531 52.381 8.23 0.00 0.00 3.25
3278 6197 2.095668 CAGAGGCTAAGCGGTAGTATCG 60.096 54.545 0.00 0.00 31.78 2.92
3280 6199 1.614413 GCAGAGGCTAAGCGGTAGTAT 59.386 52.381 0.00 0.00 36.96 2.12
3312 6231 0.443869 GCGATTCGTCTGTTGTGCAT 59.556 50.000 8.03 0.00 0.00 3.96
3324 6243 1.331756 CCCCAATCTTGAAGCGATTCG 59.668 52.381 9.12 0.62 0.00 3.34
3333 6252 2.649312 ACATGTCCTTCCCCAATCTTGA 59.351 45.455 0.00 0.00 0.00 3.02
3338 6257 0.336048 CCCACATGTCCTTCCCCAAT 59.664 55.000 0.00 0.00 0.00 3.16
3355 6274 5.588648 ACACATACACAAACTATATGCACCC 59.411 40.000 0.00 0.00 30.78 4.61
3403 6322 5.482878 TCTGTTCTATTAAGAGGGTTTCCGT 59.517 40.000 0.00 0.00 38.33 4.69
3404 6323 5.974108 TCTGTTCTATTAAGAGGGTTTCCG 58.026 41.667 0.00 0.00 38.33 4.30
3468 6387 8.338986 CGAAGAAAGAAAGAGTAAAGAAGCTTT 58.661 33.333 0.00 0.00 33.62 3.51
3469 6388 7.041712 CCGAAGAAAGAAAGAGTAAAGAAGCTT 60.042 37.037 0.00 0.00 0.00 3.74
3470 6389 6.425417 CCGAAGAAAGAAAGAGTAAAGAAGCT 59.575 38.462 0.00 0.00 0.00 3.74
3471 6390 6.347806 CCCGAAGAAAGAAAGAGTAAAGAAGC 60.348 42.308 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.