Multiple sequence alignment - TraesCS2A01G329700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G329700 chr2A 100.000 5898 0 0 1 5898 562102269 562096372 0.000000e+00 10892.0
1 TraesCS2A01G329700 chr2A 98.157 651 11 1 4201 4850 561848859 561848209 0.000000e+00 1134.0
2 TraesCS2A01G329700 chr2A 82.258 372 29 14 4850 5195 561847954 561847594 2.690000e-73 287.0
3 TraesCS2A01G329700 chr2A 83.172 309 38 4 359 655 42930531 42930837 2.710000e-68 270.0
4 TraesCS2A01G329700 chr2A 83.172 309 37 5 361 656 722491545 722491239 9.740000e-68 268.0
5 TraesCS2A01G329700 chr2A 83.165 297 36 10 374 658 706503253 706502959 5.860000e-65 259.0
6 TraesCS2A01G329700 chr2A 83.217 286 35 7 383 657 61799300 61799017 3.530000e-62 250.0
7 TraesCS2A01G329700 chr2A 82.095 296 35 6 374 657 676173820 676173531 2.750000e-58 237.0
8 TraesCS2A01G329700 chr2A 87.838 148 16 2 3177 3323 619245735 619245881 7.860000e-39 172.0
9 TraesCS2A01G329700 chr2A 83.333 114 13 3 5697 5804 561847183 561847070 3.760000e-17 100.0
10 TraesCS2A01G329700 chr2A 92.000 50 4 0 5203 5252 561847561 561847512 2.950000e-08 71.3
11 TraesCS2A01G329700 chr2D 94.666 4331 168 21 1039 5344 426926221 426930513 0.000000e+00 6660.0
12 TraesCS2A01G329700 chr2D 97.613 419 7 1 5483 5898 426930511 426930929 0.000000e+00 715.0
13 TraesCS2A01G329700 chr2D 97.015 335 7 3 672 1003 426925536 426925870 1.440000e-155 560.0
14 TraesCS2A01G329700 chr2D 91.237 194 17 0 3 196 426924576 426924769 1.260000e-66 265.0
15 TraesCS2A01G329700 chr2D 93.750 160 7 1 204 360 426925078 426925237 2.750000e-58 237.0
16 TraesCS2A01G329700 chr2D 86.702 188 22 2 3 187 470546824 470547011 7.750000e-49 206.0
17 TraesCS2A01G329700 chr2D 86.207 145 18 2 3177 3320 476962731 476962874 7.910000e-34 156.0
18 TraesCS2A01G329700 chr2D 86.207 145 18 2 3177 3320 477072420 477072563 7.910000e-34 156.0
19 TraesCS2A01G329700 chr2D 92.537 67 3 2 2744 2809 426927596 426927661 1.750000e-15 95.3
20 TraesCS2A01G329700 chr2D 94.643 56 3 0 3268 3323 476984457 476984512 2.930000e-13 87.9
21 TraesCS2A01G329700 chr2B 92.950 2071 90 17 3134 5177 503752793 503754834 0.000000e+00 2964.0
22 TraesCS2A01G329700 chr2B 94.063 1297 55 8 1078 2367 503750715 503751996 0.000000e+00 1949.0
23 TraesCS2A01G329700 chr2B 92.903 465 28 5 1906 2367 33564421 33564883 0.000000e+00 671.0
24 TraesCS2A01G329700 chr2B 91.828 465 33 5 1906 2367 84216594 84217056 1.390000e-180 643.0
25 TraesCS2A01G329700 chr2B 97.097 310 7 2 660 967 503750072 503750381 6.770000e-144 521.0
26 TraesCS2A01G329700 chr2B 95.735 211 6 1 5691 5898 503754972 503755182 2.630000e-88 337.0
27 TraesCS2A01G329700 chr2B 81.718 454 33 9 2744 3149 503752204 503752655 3.410000e-87 333.0
28 TraesCS2A01G329700 chr2B 94.146 205 11 1 2447 2651 503752002 503752205 1.600000e-80 311.0
29 TraesCS2A01G329700 chr2B 93.564 202 12 1 2447 2648 33564889 33565089 3.450000e-77 300.0
30 TraesCS2A01G329700 chr2B 88.983 236 13 7 2270 2498 503752051 503752280 4.500000e-71 279.0
31 TraesCS2A01G329700 chr2B 82.724 301 23 11 2744 3018 84217264 84217561 2.120000e-59 241.0
32 TraesCS2A01G329700 chr2B 88.000 200 23 1 3 201 503749423 503749622 9.880000e-58 235.0
33 TraesCS2A01G329700 chr2B 96.364 110 4 0 5587 5696 503754832 503754941 1.310000e-41 182.0
34 TraesCS2A01G329700 chr2B 85.526 152 21 1 3172 3323 558295275 558295425 2.200000e-34 158.0
35 TraesCS2A01G329700 chr2B 89.888 89 5 2 281 366 503750003 503750090 1.740000e-20 111.0
36 TraesCS2A01G329700 chr6B 92.241 464 33 3 1906 2367 203235530 203235992 0.000000e+00 654.0
37 TraesCS2A01G329700 chr1B 91.595 464 36 3 1906 2367 31301115 31301577 6.450000e-179 638.0
38 TraesCS2A01G329700 chr1B 92.823 209 13 2 2448 2655 240275131 240274924 9.610000e-78 302.0
39 TraesCS2A01G329700 chr1B 92.308 208 14 2 2448 2654 589634700 589634494 1.610000e-75 294.0
40 TraesCS2A01G329700 chr1B 82.895 304 39 7 362 656 376610603 376610902 1.630000e-65 261.0
41 TraesCS2A01G329700 chr1B 83.113 302 22 11 2744 3018 31301785 31302084 1.270000e-61 248.0
42 TraesCS2A01G329700 chr1B 90.385 52 5 0 3 54 530055789 530055738 1.060000e-07 69.4
43 TraesCS2A01G329700 chr7B 91.379 464 36 4 1906 2367 627395129 627394668 3.000000e-177 632.0
44 TraesCS2A01G329700 chr7B 89.871 464 43 4 1906 2367 724080042 724080503 1.420000e-165 593.0
45 TraesCS2A01G329700 chr7B 89.871 464 43 4 1906 2367 724133896 724134357 1.420000e-165 593.0
46 TraesCS2A01G329700 chr7B 93.750 208 12 1 2447 2654 627394662 627394456 1.600000e-80 311.0
47 TraesCS2A01G329700 chr7B 87.866 239 16 7 2270 2501 627394613 627394381 9.740000e-68 268.0
48 TraesCS2A01G329700 chr7B 83.390 295 34 5 374 656 214076776 214076485 5.860000e-65 259.0
49 TraesCS2A01G329700 chr7B 83.893 298 20 11 2744 3015 627394460 627394165 5.860000e-65 259.0
50 TraesCS2A01G329700 chr7B 82.019 317 41 12 356 659 685970329 685970016 7.590000e-64 255.0
51 TraesCS2A01G329700 chr4B 90.948 464 39 3 1906 2367 650566680 650567142 6.490000e-174 621.0
52 TraesCS2A01G329700 chr4B 92.823 209 13 2 2448 2655 171196497 171196704 9.610000e-78 302.0
53 TraesCS2A01G329700 chr4B 93.171 205 13 1 2447 2651 650567148 650567351 3.450000e-77 300.0
54 TraesCS2A01G329700 chr4B 88.136 236 15 7 2270 2498 650567197 650567426 9.740000e-68 268.0
55 TraesCS2A01G329700 chr4B 82.917 240 13 11 2744 2957 650567350 650567587 2.170000e-44 191.0
56 TraesCS2A01G329700 chr3B 92.344 209 14 2 2448 2655 814726066 814726273 4.470000e-76 296.0
57 TraesCS2A01G329700 chr3B 83.062 307 38 4 363 657 449806546 449806850 3.500000e-67 267.0
58 TraesCS2A01G329700 chr3B 85.606 132 14 2 3196 3323 823270970 823270840 3.710000e-27 134.0
59 TraesCS2A01G329700 chr3B 94.118 51 3 0 5 55 576335724 576335674 1.760000e-10 78.7
60 TraesCS2A01G329700 chr3A 84.053 301 41 5 362 657 108476093 108475795 3.480000e-72 283.0
61 TraesCS2A01G329700 chr3A 82.550 149 16 6 519 658 600890449 600890302 8.030000e-24 122.0
62 TraesCS2A01G329700 chrUn 84.053 301 20 11 2744 3018 467114736 467114438 1.260000e-66 265.0
63 TraesCS2A01G329700 chr7A 81.562 320 43 6 352 659 234540842 234540527 3.530000e-62 250.0
64 TraesCS2A01G329700 chr5B 83.333 282 33 7 362 630 450041808 450042088 1.270000e-61 248.0
65 TraesCS2A01G329700 chr5B 83.113 302 21 16 2744 3018 698087772 698088070 1.270000e-61 248.0
66 TraesCS2A01G329700 chr5B 86.017 236 20 7 2270 2498 698087619 698087848 2.120000e-59 241.0
67 TraesCS2A01G329700 chr5B 85.185 135 15 2 3193 3323 90994176 90994309 3.710000e-27 134.0
68 TraesCS2A01G329700 chr5A 81.877 309 41 5 361 657 621863932 621864237 4.560000e-61 246.0
69 TraesCS2A01G329700 chr3D 82.007 289 39 3 378 655 171124549 171124263 3.550000e-57 233.0
70 TraesCS2A01G329700 chr3D 82.667 150 13 3 519 657 607879486 607879339 2.890000e-23 121.0
71 TraesCS2A01G329700 chr4A 82.042 284 38 3 383 655 595646978 595647259 4.600000e-56 230.0
72 TraesCS2A01G329700 chr1D 92.105 152 12 0 5338 5489 413215827 413215978 1.290000e-51 215.0
73 TraesCS2A01G329700 chr1D 79.736 227 31 5 445 659 379591740 379591517 3.680000e-32 150.0
74 TraesCS2A01G329700 chr4D 82.072 251 31 4 416 655 352524536 352524289 1.000000e-47 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G329700 chr2A 562096372 562102269 5897 True 10892.000 10892 100.000000 1 5898 1 chr2A.!!$R2 5897
1 TraesCS2A01G329700 chr2A 561847070 561848859 1789 True 398.075 1134 88.937000 4201 5804 4 chr2A.!!$R6 1603
2 TraesCS2A01G329700 chr2D 426924576 426930929 6353 False 1422.050 6660 94.469667 3 5898 6 chr2D.!!$F5 5895
3 TraesCS2A01G329700 chr2B 503749423 503755182 5759 False 722.200 2964 91.894400 3 5898 10 chr2B.!!$F4 5895
4 TraesCS2A01G329700 chr2B 33564421 33565089 668 False 485.500 671 93.233500 1906 2648 2 chr2B.!!$F2 742
5 TraesCS2A01G329700 chr2B 84216594 84217561 967 False 442.000 643 87.276000 1906 3018 2 chr2B.!!$F3 1112
6 TraesCS2A01G329700 chr1B 31301115 31302084 969 False 443.000 638 87.354000 1906 3018 2 chr1B.!!$F2 1112
7 TraesCS2A01G329700 chr7B 627394165 627395129 964 True 367.500 632 89.222000 1906 3015 4 chr7B.!!$R3 1109
8 TraesCS2A01G329700 chr4B 650566680 650567587 907 False 345.000 621 88.793000 1906 2957 4 chr4B.!!$F2 1051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 914 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.0 4.96 0.00 31.08 2.90 F
1004 1645 0.035820 TTCAATATATCCCGCCGGGC 60.036 55.0 19.91 9.54 43.94 6.13 F
1343 2301 0.906775 GGGGTTATCGGTGGTCTTCA 59.093 55.0 0.00 0.00 0.00 3.02 F
2693 3671 1.165907 TTGTGAAGGAACTGCTGCGG 61.166 55.0 6.98 6.98 40.86 5.69 F
3819 4998 0.975040 CCTACCTCTGCTGACCTGCT 60.975 60.0 0.00 0.00 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 2548 0.671251 AGAAGAGATGCGGATCGGTC 59.329 55.000 11.52 9.87 33.34 4.79 R
2679 3657 1.067071 GTACTACCGCAGCAGTTCCTT 60.067 52.381 0.00 0.00 0.00 3.36 R
3337 4516 0.896940 AGGGGCACATGTTTGCAGAG 60.897 55.000 10.16 0.00 44.94 3.35 R
4034 5233 1.000171 GGTACCGGAGTCGTCAAGTTT 60.000 52.381 9.46 0.00 33.95 2.66 R
5460 6988 0.179004 ACTTGTTCGGCAATCCACCA 60.179 50.000 0.00 0.00 36.36 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.630126 ATGTTCAGCCGCTCCCTCAT 61.630 55.000 0.00 0.00 0.00 2.90
72 74 0.172578 CTCATAACGTGTCCAGGCGA 59.827 55.000 0.00 0.00 0.00 5.54
201 203 2.047655 GTGGCGGATGTGAACGGA 60.048 61.111 0.00 0.00 0.00 4.69
202 204 1.449601 GTGGCGGATGTGAACGGAT 60.450 57.895 0.00 0.00 0.00 4.18
215 553 1.477685 AACGGATGAGTTGGGTCGGT 61.478 55.000 0.00 0.00 32.39 4.69
251 589 3.066342 CCTAAGCGAGATTAGACGGTTGA 59.934 47.826 9.42 0.00 46.59 3.18
256 594 2.159612 CGAGATTAGACGGTTGACACGA 60.160 50.000 0.00 0.00 34.93 4.35
257 595 3.169733 GAGATTAGACGGTTGACACGAC 58.830 50.000 0.00 0.00 34.93 4.34
313 651 2.094417 CGAGAGTCGCCCTTCAAATTTC 59.906 50.000 0.00 0.00 31.14 2.17
343 681 5.934043 TCATCTATGCGCATTTGCTTACTAT 59.066 36.000 30.42 1.96 39.32 2.12
344 682 7.096551 TCATCTATGCGCATTTGCTTACTATA 58.903 34.615 30.42 4.39 39.32 1.31
345 683 7.765819 TCATCTATGCGCATTTGCTTACTATAT 59.234 33.333 30.42 1.20 39.32 0.86
346 684 7.294676 TCTATGCGCATTTGCTTACTATATG 57.705 36.000 30.42 0.00 39.32 1.78
348 686 6.558771 ATGCGCATTTGCTTACTATATGAA 57.441 33.333 19.28 0.00 39.32 2.57
349 687 6.370433 TGCGCATTTGCTTACTATATGAAA 57.630 33.333 5.66 0.00 39.32 2.69
350 688 6.969366 TGCGCATTTGCTTACTATATGAAAT 58.031 32.000 5.66 0.00 39.32 2.17
351 689 8.093659 TGCGCATTTGCTTACTATATGAAATA 57.906 30.769 5.66 0.00 39.32 1.40
352 690 8.729756 TGCGCATTTGCTTACTATATGAAATAT 58.270 29.630 5.66 0.00 40.08 1.28
353 691 9.003112 GCGCATTTGCTTACTATATGAAATATG 57.997 33.333 0.30 0.00 38.36 1.78
369 707 8.887036 ATGAAATATGTCATACAGCGAACTAA 57.113 30.769 6.60 0.00 36.46 2.24
370 708 8.352752 TGAAATATGTCATACAGCGAACTAAG 57.647 34.615 0.00 0.00 0.00 2.18
371 709 6.771188 AATATGTCATACAGCGAACTAAGC 57.229 37.500 0.00 0.00 0.00 3.09
372 710 2.888594 TGTCATACAGCGAACTAAGCC 58.111 47.619 0.00 0.00 34.64 4.35
373 711 1.852895 GTCATACAGCGAACTAAGCCG 59.147 52.381 0.00 0.00 34.64 5.52
374 712 1.475280 TCATACAGCGAACTAAGCCGT 59.525 47.619 0.00 0.00 34.64 5.68
375 713 1.588404 CATACAGCGAACTAAGCCGTG 59.412 52.381 0.00 0.00 34.64 4.94
376 714 0.599558 TACAGCGAACTAAGCCGTGT 59.400 50.000 0.00 0.00 34.64 4.49
377 715 0.249741 ACAGCGAACTAAGCCGTGTT 60.250 50.000 0.00 0.00 34.64 3.32
378 716 0.865769 CAGCGAACTAAGCCGTGTTT 59.134 50.000 0.00 0.00 34.64 2.83
379 717 0.865769 AGCGAACTAAGCCGTGTTTG 59.134 50.000 0.00 0.00 34.64 2.93
380 718 0.110373 GCGAACTAAGCCGTGTTTGG 60.110 55.000 0.00 0.00 0.00 3.28
381 719 1.504359 CGAACTAAGCCGTGTTTGGA 58.496 50.000 0.00 0.00 0.00 3.53
382 720 2.073816 CGAACTAAGCCGTGTTTGGAT 58.926 47.619 0.00 0.00 0.00 3.41
383 721 2.159707 CGAACTAAGCCGTGTTTGGATG 60.160 50.000 0.00 0.00 0.00 3.51
384 722 1.821216 ACTAAGCCGTGTTTGGATGG 58.179 50.000 0.00 0.00 0.00 3.51
385 723 1.073284 ACTAAGCCGTGTTTGGATGGT 59.927 47.619 0.00 0.00 0.00 3.55
386 724 2.159382 CTAAGCCGTGTTTGGATGGTT 58.841 47.619 0.00 0.00 0.00 3.67
387 725 2.279935 AAGCCGTGTTTGGATGGTTA 57.720 45.000 0.00 0.00 0.00 2.85
388 726 1.821216 AGCCGTGTTTGGATGGTTAG 58.179 50.000 0.00 0.00 0.00 2.34
389 727 1.349688 AGCCGTGTTTGGATGGTTAGA 59.650 47.619 0.00 0.00 0.00 2.10
390 728 1.737793 GCCGTGTTTGGATGGTTAGAG 59.262 52.381 0.00 0.00 0.00 2.43
391 729 2.356135 CCGTGTTTGGATGGTTAGAGG 58.644 52.381 0.00 0.00 0.00 3.69
392 730 2.356135 CGTGTTTGGATGGTTAGAGGG 58.644 52.381 0.00 0.00 0.00 4.30
393 731 2.027561 CGTGTTTGGATGGTTAGAGGGA 60.028 50.000 0.00 0.00 0.00 4.20
394 732 3.344515 GTGTTTGGATGGTTAGAGGGAC 58.655 50.000 0.00 0.00 0.00 4.46
395 733 2.983192 TGTTTGGATGGTTAGAGGGACA 59.017 45.455 0.00 0.00 0.00 4.02
396 734 3.009033 TGTTTGGATGGTTAGAGGGACAG 59.991 47.826 0.00 0.00 0.00 3.51
397 735 2.642171 TGGATGGTTAGAGGGACAGT 57.358 50.000 0.00 0.00 0.00 3.55
398 736 3.769189 TGGATGGTTAGAGGGACAGTA 57.231 47.619 0.00 0.00 0.00 2.74
399 737 3.643237 TGGATGGTTAGAGGGACAGTAG 58.357 50.000 0.00 0.00 0.00 2.57
400 738 3.012502 TGGATGGTTAGAGGGACAGTAGT 59.987 47.826 0.00 0.00 0.00 2.73
401 739 4.231195 TGGATGGTTAGAGGGACAGTAGTA 59.769 45.833 0.00 0.00 0.00 1.82
402 740 5.103215 TGGATGGTTAGAGGGACAGTAGTAT 60.103 44.000 0.00 0.00 0.00 2.12
403 741 5.477637 GGATGGTTAGAGGGACAGTAGTATC 59.522 48.000 0.00 0.00 0.00 2.24
404 742 5.728937 TGGTTAGAGGGACAGTAGTATCT 57.271 43.478 0.00 0.00 0.00 1.98
405 743 5.692928 TGGTTAGAGGGACAGTAGTATCTC 58.307 45.833 0.00 0.00 0.00 2.75
406 744 5.432390 TGGTTAGAGGGACAGTAGTATCTCT 59.568 44.000 0.00 0.00 39.22 3.10
407 745 5.999600 GGTTAGAGGGACAGTAGTATCTCTC 59.000 48.000 0.00 0.00 37.90 3.20
408 746 6.409464 GGTTAGAGGGACAGTAGTATCTCTCA 60.409 46.154 8.44 0.00 37.90 3.27
409 747 5.718801 AGAGGGACAGTAGTATCTCTCAA 57.281 43.478 8.44 0.00 34.27 3.02
410 748 6.274322 AGAGGGACAGTAGTATCTCTCAAT 57.726 41.667 8.44 0.00 34.27 2.57
411 749 6.303839 AGAGGGACAGTAGTATCTCTCAATC 58.696 44.000 8.44 0.00 34.27 2.67
412 750 5.390387 AGGGACAGTAGTATCTCTCAATCC 58.610 45.833 0.00 0.00 0.00 3.01
413 751 5.103473 AGGGACAGTAGTATCTCTCAATCCA 60.103 44.000 0.00 0.00 0.00 3.41
414 752 5.777732 GGGACAGTAGTATCTCTCAATCCAT 59.222 44.000 0.00 0.00 0.00 3.41
415 753 6.071616 GGGACAGTAGTATCTCTCAATCCATC 60.072 46.154 0.00 0.00 0.00 3.51
416 754 6.491745 GGACAGTAGTATCTCTCAATCCATCA 59.508 42.308 0.00 0.00 0.00 3.07
417 755 7.309133 GGACAGTAGTATCTCTCAATCCATCAG 60.309 44.444 0.00 0.00 0.00 2.90
418 756 6.493115 ACAGTAGTATCTCTCAATCCATCAGG 59.507 42.308 0.00 0.00 0.00 3.86
438 776 1.064654 GATTCAAATCCTGGTGCTCGC 59.935 52.381 0.00 0.00 0.00 5.03
439 777 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
440 778 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
441 779 1.209261 TCAAATCCTGGTGCTCGCATA 59.791 47.619 0.00 0.00 0.00 3.14
442 780 2.016318 CAAATCCTGGTGCTCGCATAA 58.984 47.619 0.00 0.00 0.00 1.90
443 781 2.620115 CAAATCCTGGTGCTCGCATAAT 59.380 45.455 0.00 0.00 0.00 1.28
444 782 2.645838 ATCCTGGTGCTCGCATAATT 57.354 45.000 0.00 0.00 0.00 1.40
445 783 2.418368 TCCTGGTGCTCGCATAATTT 57.582 45.000 0.00 0.00 0.00 1.82
446 784 2.288666 TCCTGGTGCTCGCATAATTTC 58.711 47.619 0.00 0.00 0.00 2.17
447 785 2.092968 TCCTGGTGCTCGCATAATTTCT 60.093 45.455 0.00 0.00 0.00 2.52
448 786 2.032550 CCTGGTGCTCGCATAATTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
449 787 2.938451 CTGGTGCTCGCATAATTTCTGA 59.062 45.455 0.00 0.00 0.00 3.27
450 788 3.342719 TGGTGCTCGCATAATTTCTGAA 58.657 40.909 0.00 0.00 0.00 3.02
451 789 3.947196 TGGTGCTCGCATAATTTCTGAAT 59.053 39.130 0.00 0.00 0.00 2.57
452 790 4.398988 TGGTGCTCGCATAATTTCTGAATT 59.601 37.500 0.00 0.00 38.88 2.17
453 791 5.105797 TGGTGCTCGCATAATTTCTGAATTT 60.106 36.000 0.00 3.39 36.82 1.82
454 792 6.094742 TGGTGCTCGCATAATTTCTGAATTTA 59.905 34.615 7.08 7.08 36.82 1.40
455 793 7.141363 GGTGCTCGCATAATTTCTGAATTTAT 58.859 34.615 10.29 10.29 36.82 1.40
456 794 7.649306 GGTGCTCGCATAATTTCTGAATTTATT 59.351 33.333 12.46 3.73 36.82 1.40
457 795 9.023967 GTGCTCGCATAATTTCTGAATTTATTT 57.976 29.630 12.46 0.00 36.82 1.40
458 796 9.585099 TGCTCGCATAATTTCTGAATTTATTTT 57.415 25.926 12.46 0.00 36.82 1.82
470 808 9.581099 TTCTGAATTTATTTTAGGATTTTCGGC 57.419 29.630 0.00 0.00 0.00 5.54
471 809 8.744652 TCTGAATTTATTTTAGGATTTTCGGCA 58.255 29.630 0.00 0.00 0.00 5.69
472 810 9.364989 CTGAATTTATTTTAGGATTTTCGGCAA 57.635 29.630 0.00 0.00 0.00 4.52
473 811 9.883142 TGAATTTATTTTAGGATTTTCGGCAAT 57.117 25.926 0.00 0.00 0.00 3.56
475 813 7.532682 TTTATTTTAGGATTTTCGGCAATGC 57.467 32.000 0.00 0.00 0.00 3.56
476 814 4.527509 TTTTAGGATTTTCGGCAATGCA 57.472 36.364 7.79 0.00 0.00 3.96
477 815 3.502191 TTAGGATTTTCGGCAATGCAC 57.498 42.857 7.79 0.00 0.00 4.57
478 816 1.255882 AGGATTTTCGGCAATGCACA 58.744 45.000 7.79 0.00 0.00 4.57
479 817 1.826720 AGGATTTTCGGCAATGCACAT 59.173 42.857 7.79 0.00 0.00 3.21
480 818 2.234414 AGGATTTTCGGCAATGCACATT 59.766 40.909 7.79 0.00 0.00 2.71
481 819 2.604462 GGATTTTCGGCAATGCACATTC 59.396 45.455 7.79 0.00 0.00 2.67
482 820 2.808523 TTTTCGGCAATGCACATTCA 57.191 40.000 7.79 0.00 0.00 2.57
483 821 2.350899 TTTCGGCAATGCACATTCAG 57.649 45.000 7.79 0.00 0.00 3.02
484 822 1.246649 TTCGGCAATGCACATTCAGT 58.753 45.000 7.79 0.00 0.00 3.41
498 836 5.083533 ACATTCAGTGAGAGGAGATGTTC 57.916 43.478 0.91 0.00 0.00 3.18
507 845 3.274393 GGAGATGTTCCCGTCGATG 57.726 57.895 0.00 0.00 40.37 3.84
508 846 0.744874 GGAGATGTTCCCGTCGATGA 59.255 55.000 6.11 0.00 40.37 2.92
509 847 1.536284 GGAGATGTTCCCGTCGATGAC 60.536 57.143 6.11 0.00 40.37 3.06
519 857 3.427670 TCGATGACGATGCGCCTA 58.572 55.556 4.18 0.00 43.81 3.93
520 858 1.008881 TCGATGACGATGCGCCTAC 60.009 57.895 4.18 0.00 43.81 3.18
521 859 2.357543 CGATGACGATGCGCCTACG 61.358 63.158 4.18 10.77 42.66 3.51
522 860 2.016704 GATGACGATGCGCCTACGG 61.017 63.158 18.56 1.95 40.57 4.02
523 861 2.679132 GATGACGATGCGCCTACGGT 62.679 60.000 18.56 4.93 40.57 4.83
524 862 2.954020 ATGACGATGCGCCTACGGTG 62.954 60.000 18.56 0.00 40.57 4.94
525 863 3.405592 GACGATGCGCCTACGGTGA 62.406 63.158 18.56 0.00 40.57 4.02
526 864 2.954868 CGATGCGCCTACGGTGAC 60.955 66.667 4.18 0.00 40.57 3.67
527 865 2.494918 GATGCGCCTACGGTGACT 59.505 61.111 4.18 0.00 40.57 3.41
528 866 1.589196 GATGCGCCTACGGTGACTC 60.589 63.158 4.18 0.00 40.57 3.36
529 867 2.955751 GATGCGCCTACGGTGACTCC 62.956 65.000 4.18 0.00 40.57 3.85
545 883 7.605410 GGTGACTCCGTAAATTTAAAGATGA 57.395 36.000 0.00 0.00 0.00 2.92
546 884 7.461918 GGTGACTCCGTAAATTTAAAGATGAC 58.538 38.462 0.00 0.00 0.00 3.06
547 885 7.118680 GGTGACTCCGTAAATTTAAAGATGACA 59.881 37.037 0.00 0.00 0.00 3.58
548 886 8.500773 GTGACTCCGTAAATTTAAAGATGACAA 58.499 33.333 0.00 0.00 0.00 3.18
549 887 8.717821 TGACTCCGTAAATTTAAAGATGACAAG 58.282 33.333 0.00 0.00 0.00 3.16
550 888 7.527457 ACTCCGTAAATTTAAAGATGACAAGC 58.473 34.615 0.00 0.00 0.00 4.01
551 889 6.848451 TCCGTAAATTTAAAGATGACAAGCC 58.152 36.000 0.00 0.00 0.00 4.35
552 890 5.737290 CCGTAAATTTAAAGATGACAAGCCG 59.263 40.000 0.00 0.00 0.00 5.52
553 891 6.402766 CCGTAAATTTAAAGATGACAAGCCGA 60.403 38.462 0.00 0.00 0.00 5.54
554 892 6.464834 CGTAAATTTAAAGATGACAAGCCGAC 59.535 38.462 0.00 0.00 0.00 4.79
555 893 6.575162 AAATTTAAAGATGACAAGCCGACT 57.425 33.333 0.00 0.00 0.00 4.18
556 894 5.803020 ATTTAAAGATGACAAGCCGACTC 57.197 39.130 0.00 0.00 0.00 3.36
557 895 2.839486 AAAGATGACAAGCCGACTCA 57.161 45.000 0.00 0.00 0.00 3.41
558 896 2.376808 AAGATGACAAGCCGACTCAG 57.623 50.000 0.00 0.00 0.00 3.35
559 897 1.261480 AGATGACAAGCCGACTCAGT 58.739 50.000 0.00 0.00 0.00 3.41
560 898 1.203523 AGATGACAAGCCGACTCAGTC 59.796 52.381 0.00 0.00 33.64 3.51
561 899 1.203523 GATGACAAGCCGACTCAGTCT 59.796 52.381 2.61 0.00 33.97 3.24
562 900 0.598562 TGACAAGCCGACTCAGTCTC 59.401 55.000 2.61 0.00 33.97 3.36
563 901 0.885196 GACAAGCCGACTCAGTCTCT 59.115 55.000 2.61 0.00 31.55 3.10
564 902 0.885196 ACAAGCCGACTCAGTCTCTC 59.115 55.000 2.61 0.00 0.00 3.20
565 903 0.179176 CAAGCCGACTCAGTCTCTCG 60.179 60.000 2.61 0.00 0.00 4.04
569 907 2.389386 CGACTCAGTCTCTCGGAGG 58.611 63.158 2.61 0.00 41.46 4.30
570 908 0.391927 CGACTCAGTCTCTCGGAGGT 60.392 60.000 2.61 0.00 41.46 3.85
571 909 1.091537 GACTCAGTCTCTCGGAGGTG 58.908 60.000 4.96 0.00 41.46 4.00
572 910 0.963355 ACTCAGTCTCTCGGAGGTGC 60.963 60.000 4.96 0.00 41.46 5.01
573 911 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
574 912 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
575 913 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
576 914 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
577 915 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
578 916 2.158534 AGTCTCTCGGAGGTGCTCATAT 60.159 50.000 4.96 0.00 31.08 1.78
579 917 2.030363 GTCTCTCGGAGGTGCTCATATG 60.030 54.545 4.96 0.00 31.08 1.78
580 918 0.676184 TCTCGGAGGTGCTCATATGC 59.324 55.000 4.96 0.00 31.08 3.14
581 919 0.665670 CTCGGAGGTGCTCATATGCG 60.666 60.000 0.00 0.00 35.36 4.73
582 920 1.068083 CGGAGGTGCTCATATGCGT 59.932 57.895 0.00 0.00 35.36 5.24
583 921 1.217585 CGGAGGTGCTCATATGCGTG 61.218 60.000 0.00 0.00 35.36 5.34
584 922 0.179073 GGAGGTGCTCATATGCGTGT 60.179 55.000 0.00 0.00 35.36 4.49
585 923 0.933097 GAGGTGCTCATATGCGTGTG 59.067 55.000 0.00 0.00 35.36 3.82
586 924 0.250234 AGGTGCTCATATGCGTGTGT 59.750 50.000 2.35 0.00 35.36 3.72
587 925 0.374758 GGTGCTCATATGCGTGTGTG 59.625 55.000 2.35 1.53 35.36 3.82
588 926 0.247814 GTGCTCATATGCGTGTGTGC 60.248 55.000 19.16 19.16 36.76 4.57
589 927 1.011904 GCTCATATGCGTGTGTGCG 60.012 57.895 12.89 0.73 37.81 5.34
590 928 1.695893 GCTCATATGCGTGTGTGCGT 61.696 55.000 12.89 0.00 37.81 5.24
591 929 0.721154 CTCATATGCGTGTGTGCGTT 59.279 50.000 2.35 0.00 37.81 4.84
592 930 1.128507 CTCATATGCGTGTGTGCGTTT 59.871 47.619 2.35 0.00 37.81 3.60
593 931 2.338500 TCATATGCGTGTGTGCGTTTA 58.662 42.857 2.35 0.00 37.81 2.01
594 932 2.933260 TCATATGCGTGTGTGCGTTTAT 59.067 40.909 2.35 0.00 37.81 1.40
595 933 4.113354 TCATATGCGTGTGTGCGTTTATA 58.887 39.130 2.35 0.00 37.81 0.98
596 934 4.747605 TCATATGCGTGTGTGCGTTTATAT 59.252 37.500 2.35 0.00 37.81 0.86
597 935 2.796976 TGCGTGTGTGCGTTTATATG 57.203 45.000 0.00 0.00 37.81 1.78
598 936 1.395262 TGCGTGTGTGCGTTTATATGG 59.605 47.619 0.00 0.00 37.81 2.74
599 937 1.661617 GCGTGTGTGCGTTTATATGGA 59.338 47.619 0.00 0.00 0.00 3.41
600 938 2.286833 GCGTGTGTGCGTTTATATGGAT 59.713 45.455 0.00 0.00 0.00 3.41
601 939 3.844585 GCGTGTGTGCGTTTATATGGATG 60.845 47.826 0.00 0.00 0.00 3.51
602 940 3.553917 CGTGTGTGCGTTTATATGGATGA 59.446 43.478 0.00 0.00 0.00 2.92
603 941 4.318050 CGTGTGTGCGTTTATATGGATGAG 60.318 45.833 0.00 0.00 0.00 2.90
604 942 4.570772 GTGTGTGCGTTTATATGGATGAGT 59.429 41.667 0.00 0.00 0.00 3.41
605 943 4.570369 TGTGTGCGTTTATATGGATGAGTG 59.430 41.667 0.00 0.00 0.00 3.51
606 944 4.570772 GTGTGCGTTTATATGGATGAGTGT 59.429 41.667 0.00 0.00 0.00 3.55
607 945 5.751509 GTGTGCGTTTATATGGATGAGTGTA 59.248 40.000 0.00 0.00 0.00 2.90
608 946 6.423905 GTGTGCGTTTATATGGATGAGTGTAT 59.576 38.462 0.00 0.00 0.00 2.29
609 947 6.423604 TGTGCGTTTATATGGATGAGTGTATG 59.576 38.462 0.00 0.00 0.00 2.39
610 948 6.423905 GTGCGTTTATATGGATGAGTGTATGT 59.576 38.462 0.00 0.00 0.00 2.29
611 949 6.423604 TGCGTTTATATGGATGAGTGTATGTG 59.576 38.462 0.00 0.00 0.00 3.21
612 950 6.618592 GCGTTTATATGGATGAGTGTATGTGC 60.619 42.308 0.00 0.00 0.00 4.57
613 951 6.399986 CGTTTATATGGATGAGTGTATGTGCG 60.400 42.308 0.00 0.00 0.00 5.34
614 952 2.988010 ATGGATGAGTGTATGTGCGT 57.012 45.000 0.00 0.00 0.00 5.24
615 953 5.722021 ATATGGATGAGTGTATGTGCGTA 57.278 39.130 0.00 0.00 0.00 4.42
616 954 4.607293 ATGGATGAGTGTATGTGCGTAT 57.393 40.909 0.00 0.00 0.00 3.06
617 955 5.722021 ATGGATGAGTGTATGTGCGTATA 57.278 39.130 0.00 0.00 0.00 1.47
618 956 5.722021 TGGATGAGTGTATGTGCGTATAT 57.278 39.130 0.00 0.00 0.00 0.86
619 957 6.827586 TGGATGAGTGTATGTGCGTATATA 57.172 37.500 0.00 0.00 0.00 0.86
620 958 7.404671 TGGATGAGTGTATGTGCGTATATAT 57.595 36.000 0.00 0.00 0.00 0.86
621 959 7.257722 TGGATGAGTGTATGTGCGTATATATG 58.742 38.462 0.00 0.00 0.00 1.78
622 960 7.122055 TGGATGAGTGTATGTGCGTATATATGA 59.878 37.037 6.12 0.00 0.00 2.15
623 961 7.645735 GGATGAGTGTATGTGCGTATATATGAG 59.354 40.741 6.12 0.00 0.00 2.90
624 962 6.322491 TGAGTGTATGTGCGTATATATGAGC 58.678 40.000 6.12 1.54 0.00 4.26
625 963 5.332707 AGTGTATGTGCGTATATATGAGCG 58.667 41.667 6.12 0.00 0.00 5.03
631 969 1.927174 GCGTATATATGAGCGCTTGGG 59.073 52.381 13.26 0.00 45.48 4.12
632 970 2.674177 GCGTATATATGAGCGCTTGGGT 60.674 50.000 13.26 0.94 45.48 4.51
633 971 3.179830 CGTATATATGAGCGCTTGGGTC 58.820 50.000 13.26 0.00 43.52 4.46
634 972 2.370281 ATATATGAGCGCTTGGGTCG 57.630 50.000 13.26 0.00 46.20 4.79
635 973 0.317160 TATATGAGCGCTTGGGTCGG 59.683 55.000 13.26 0.00 46.20 4.79
636 974 1.686325 ATATGAGCGCTTGGGTCGGT 61.686 55.000 13.26 0.00 46.20 4.69
637 975 1.038681 TATGAGCGCTTGGGTCGGTA 61.039 55.000 13.26 0.00 46.20 4.02
638 976 2.508663 GAGCGCTTGGGTCGGTAC 60.509 66.667 13.26 0.00 37.81 3.34
639 977 2.995574 AGCGCTTGGGTCGGTACT 60.996 61.111 2.64 0.00 35.79 2.73
640 978 1.660560 GAGCGCTTGGGTCGGTACTA 61.661 60.000 13.26 0.00 37.81 1.82
641 979 1.216178 GCGCTTGGGTCGGTACTAA 59.784 57.895 0.00 0.00 0.00 2.24
642 980 0.179092 GCGCTTGGGTCGGTACTAAT 60.179 55.000 0.00 0.00 0.00 1.73
643 981 1.567504 CGCTTGGGTCGGTACTAATG 58.432 55.000 0.00 0.00 0.00 1.90
644 982 1.134907 CGCTTGGGTCGGTACTAATGT 60.135 52.381 0.00 0.00 0.00 2.71
645 983 2.675889 CGCTTGGGTCGGTACTAATGTT 60.676 50.000 0.00 0.00 0.00 2.71
646 984 2.934553 GCTTGGGTCGGTACTAATGTTC 59.065 50.000 0.00 0.00 0.00 3.18
647 985 3.618019 GCTTGGGTCGGTACTAATGTTCA 60.618 47.826 0.00 0.00 0.00 3.18
648 986 3.880047 TGGGTCGGTACTAATGTTCAG 57.120 47.619 0.00 0.00 0.00 3.02
649 987 3.433343 TGGGTCGGTACTAATGTTCAGA 58.567 45.455 0.00 0.00 0.00 3.27
650 988 3.833650 TGGGTCGGTACTAATGTTCAGAA 59.166 43.478 0.00 0.00 0.00 3.02
651 989 4.283978 TGGGTCGGTACTAATGTTCAGAAA 59.716 41.667 0.00 0.00 0.00 2.52
652 990 5.221682 TGGGTCGGTACTAATGTTCAGAAAA 60.222 40.000 0.00 0.00 0.00 2.29
653 991 5.702209 GGGTCGGTACTAATGTTCAGAAAAA 59.298 40.000 0.00 0.00 0.00 1.94
802 1442 2.359900 AGAACGCATCCAAATCTCACC 58.640 47.619 0.00 0.00 0.00 4.02
874 1515 0.538516 CCATTCCCAAACACCGGACA 60.539 55.000 9.46 0.00 0.00 4.02
950 1591 1.022982 GGAACCCGTGGACCGAAATC 61.023 60.000 0.00 0.00 39.56 2.17
1003 1644 2.483014 TTTCAATATATCCCGCCGGG 57.517 50.000 18.41 18.41 46.11 5.73
1004 1645 0.035820 TTCAATATATCCCGCCGGGC 60.036 55.000 19.91 9.54 43.94 6.13
1036 1677 1.770324 CCCCCATTCCCCATCTAGC 59.230 63.158 0.00 0.00 0.00 3.42
1037 1678 1.770324 CCCCATTCCCCATCTAGCC 59.230 63.158 0.00 0.00 0.00 3.93
1112 2068 2.483491 CGGTAGATTAGAGTCCGTAGCC 59.517 54.545 0.00 0.00 36.99 3.93
1116 2072 3.137533 AGATTAGAGTCCGTAGCCGTAC 58.862 50.000 0.00 0.00 0.00 3.67
1332 2290 2.544267 CGCGAGAAATCTTGGGGTTATC 59.456 50.000 0.00 0.00 36.85 1.75
1343 2301 0.906775 GGGGTTATCGGTGGTCTTCA 59.093 55.000 0.00 0.00 0.00 3.02
1377 2335 4.321156 CGCATCCATTTCTTGGTCTTTTGA 60.321 41.667 0.00 0.00 46.52 2.69
1443 2404 2.742774 GTTTTGCGCTTGTGGATTTCT 58.257 42.857 9.73 0.00 0.00 2.52
1448 2409 1.533625 CGCTTGTGGATTTCTGGGAA 58.466 50.000 0.00 0.00 0.00 3.97
1587 2548 2.807967 TGATGCGTTTCTTGGAGTTCTG 59.192 45.455 0.00 0.00 0.00 3.02
1642 2603 2.421107 GCAGATCTCCAAGATGCCTGAA 60.421 50.000 0.00 0.00 34.53 3.02
1804 2765 3.112709 GAGAACGTGCCGCCAGTC 61.113 66.667 0.00 0.00 0.00 3.51
1843 2804 4.465446 CCGAGGAGGAGGAGCCCA 62.465 72.222 0.00 0.00 45.00 5.36
1900 2861 6.982141 GTGATATCACGGTGATTGTAAAGGTA 59.018 38.462 26.94 7.81 38.26 3.08
2020 2983 2.872245 TGCACTGTGCTGTTTAAGAGTC 59.128 45.455 30.43 0.65 45.31 3.36
2053 3016 5.169295 ACGTGTATAGTGCCTTTTCTTCTC 58.831 41.667 0.00 0.00 0.00 2.87
2185 3162 7.137490 TCAGCTATATGATTTTGTGCTATGC 57.863 36.000 0.00 0.00 0.00 3.14
2200 3177 1.873591 CTATGCTACATTTCCACCGGC 59.126 52.381 0.00 0.00 0.00 6.13
2443 3421 9.793259 AATAGATGTATTATTTCCGTGATTGGT 57.207 29.630 0.00 0.00 0.00 3.67
2600 3578 6.158598 TGAACGTAATGGTAACTAGTTGGTC 58.841 40.000 18.56 7.33 37.61 4.02
2643 3621 8.809478 GCTATAACTTTTAGTAGTGAGCAGAAC 58.191 37.037 0.00 0.00 33.09 3.01
2663 3641 3.633418 ACAGATGTACTACCTCTGGTCC 58.367 50.000 19.74 0.00 42.66 4.46
2675 3653 3.081804 CCTCTGGTCCGCTTTAATTGTT 58.918 45.455 0.00 0.00 0.00 2.83
2679 3657 3.215151 TGGTCCGCTTTAATTGTTGTGA 58.785 40.909 0.00 0.00 0.00 3.58
2693 3671 1.165907 TTGTGAAGGAACTGCTGCGG 61.166 55.000 6.98 6.98 40.86 5.69
2718 3696 1.597663 ACAAAGTTGTGTACAGCTCGC 59.402 47.619 0.00 0.00 40.49 5.03
2731 3709 3.000041 ACAGCTCGCGACAATAATTTCA 59.000 40.909 3.71 0.00 0.00 2.69
2806 3790 8.642908 TTGACTATTGGTATGAAGTATTGACG 57.357 34.615 0.00 0.00 0.00 4.35
2843 3828 6.488344 TGTGCTCATGAACCATTACTTTGTTA 59.512 34.615 0.00 0.00 0.00 2.41
3081 4105 8.090831 TGATGCCTGAGTATGATTCAGTTATAC 58.909 37.037 2.05 0.00 40.32 1.47
3125 4151 8.856247 GTTTTAGTTTTCGGCACTATTATTTGG 58.144 33.333 0.00 0.00 0.00 3.28
3145 4171 4.124238 TGGCTACCAGTATTGTTTATCGC 58.876 43.478 0.00 0.00 0.00 4.58
3165 4343 4.693566 TCGCAAACCGTTTCTTTCTATCAT 59.306 37.500 0.00 0.00 38.35 2.45
3300 4478 7.685481 TCTTTTGATATTACCTGACCAAGTGA 58.315 34.615 0.00 0.00 0.00 3.41
3337 4516 9.736023 CTCCAAAGTTGTTTATGCCTATAAATC 57.264 33.333 0.00 0.00 40.01 2.17
3372 4551 7.120923 TGTGCCCCTTATACTCTTAAGTAAG 57.879 40.000 1.63 3.32 41.25 2.34
3376 4555 6.325804 GCCCCTTATACTCTTAAGTAAGACCA 59.674 42.308 10.61 0.00 41.25 4.02
3405 4584 9.944376 AATGTTGTCTATATGCGTATATCCTTT 57.056 29.630 9.43 0.00 31.97 3.11
3446 4625 5.375417 TCTTTTGGTCATGCTGTACATTG 57.625 39.130 0.00 0.00 36.64 2.82
3458 4637 4.275689 TGCTGTACATTGTGCATTATAGCC 59.724 41.667 8.06 0.00 30.05 3.93
3459 4638 4.320494 GCTGTACATTGTGCATTATAGCCC 60.320 45.833 8.06 0.00 0.00 5.19
3477 4656 2.289565 CCCGAGGCTGGTAATTCTTTC 58.710 52.381 0.00 0.00 0.00 2.62
3509 4688 7.378995 GCTGTACATTGTGCTACTGTATACTAC 59.621 40.741 4.17 0.00 0.00 2.73
3546 4725 7.012327 GCATGCACCAGTTAGATGTCTATTTAA 59.988 37.037 14.21 0.00 0.00 1.52
3652 4831 7.524294 AATGTTTCTTGTGTGTCATTCAAAC 57.476 32.000 0.00 0.00 35.00 2.93
3653 4832 6.018589 TGTTTCTTGTGTGTCATTCAAACA 57.981 33.333 0.00 0.00 41.93 2.83
3691 4870 6.694445 TTGGGTTATTTTGATTGGTGGAAT 57.306 33.333 0.00 0.00 0.00 3.01
3764 4943 4.176271 GGCATGATTTCTTTAACAGTGCC 58.824 43.478 0.00 0.00 42.19 5.01
3819 4998 0.975040 CCTACCTCTGCTGACCTGCT 60.975 60.000 0.00 0.00 0.00 4.24
3839 5018 7.124147 ACCTGCTTTGGCTACATATTTGTTATT 59.876 33.333 0.00 0.00 39.59 1.40
3842 5021 9.149225 TGCTTTGGCTACATATTTGTTATTTTG 57.851 29.630 0.00 0.00 39.59 2.44
3843 5022 9.364989 GCTTTGGCTACATATTTGTTATTTTGA 57.635 29.630 0.00 0.00 37.28 2.69
3848 5027 9.816354 GGCTACATATTTGTTATTTTGATTGGT 57.184 29.630 0.00 0.00 37.28 3.67
3869 5068 7.814264 TGGTGCCATTCAAATGTTTATTTTT 57.186 28.000 2.31 0.00 34.34 1.94
3886 5085 7.938140 TTATTTTTGCAGCAGGTAGTTCTAT 57.062 32.000 0.00 0.00 0.00 1.98
3887 5086 9.456147 TTTATTTTTGCAGCAGGTAGTTCTATA 57.544 29.630 0.00 0.00 0.00 1.31
3932 5131 4.712763 CATGTTCTTTCTTTCTACGTGCC 58.287 43.478 0.00 0.00 0.00 5.01
3950 5149 2.432146 TGCCGCTCTTCTGACTATTGAT 59.568 45.455 0.00 0.00 0.00 2.57
4010 5209 2.116736 CTCGGCAGCAAAGCGAAACA 62.117 55.000 0.00 0.00 34.64 2.83
4024 5223 2.693069 CGAAACACCTGAGCAATCTCT 58.307 47.619 0.00 0.00 40.03 3.10
4055 5254 1.136147 CTTGACGACTCCGGTACCG 59.864 63.158 27.68 27.68 40.78 4.02
4136 5335 4.082733 GGTTCTGGCTTAACTGAAATGGTC 60.083 45.833 3.24 0.00 31.50 4.02
4217 5416 2.036475 GAGCTCACAGAAGACTCCAACA 59.964 50.000 9.40 0.00 0.00 3.33
4374 5573 2.941064 CTCATGTCCATGCGATGAGTTT 59.059 45.455 14.32 0.00 38.77 2.66
4909 6385 6.324819 AGATTCATTTTTGTTGCCGTATCAG 58.675 36.000 0.00 0.00 0.00 2.90
4969 6447 8.729805 TTGCATAAAATTTGGTTCTGTTTCTT 57.270 26.923 0.00 0.00 0.00 2.52
4970 6448 8.729805 TGCATAAAATTTGGTTCTGTTTCTTT 57.270 26.923 0.00 0.00 0.00 2.52
4971 6449 9.171877 TGCATAAAATTTGGTTCTGTTTCTTTT 57.828 25.926 0.00 0.00 0.00 2.27
5252 6780 8.278639 TGTTCACATGGTTATGTAATTAGGGAT 58.721 33.333 0.00 0.00 45.53 3.85
5253 6781 9.131791 GTTCACATGGTTATGTAATTAGGGATT 57.868 33.333 0.00 0.00 45.53 3.01
5272 6800 5.123979 GGGATTAAGAGAACATGTTCACACC 59.876 44.000 33.92 24.56 41.84 4.16
5292 6820 5.163561 ACACCGTTTCACATCTGACATTTTT 60.164 36.000 0.00 0.00 0.00 1.94
5297 6825 9.061610 CCGTTTCACATCTGACATTTTTATTAC 57.938 33.333 0.00 0.00 0.00 1.89
5341 6869 8.720562 GGCTTAAGAATACATTGTTGCAAAATT 58.279 29.630 6.67 0.00 0.00 1.82
5346 6874 8.776376 AGAATACATTGTTGCAAAATTTAGGG 57.224 30.769 0.00 0.00 0.00 3.53
5347 6875 6.983474 ATACATTGTTGCAAAATTTAGGGC 57.017 33.333 0.00 0.00 0.00 5.19
5348 6876 4.071423 ACATTGTTGCAAAATTTAGGGCC 58.929 39.130 0.00 0.00 0.00 5.80
5349 6877 2.849294 TGTTGCAAAATTTAGGGCCC 57.151 45.000 16.46 16.46 0.00 5.80
5350 6878 1.001406 TGTTGCAAAATTTAGGGCCCG 59.999 47.619 18.44 0.00 0.00 6.13
5351 6879 1.001520 GTTGCAAAATTTAGGGCCCGT 59.998 47.619 18.44 7.64 0.00 5.28
5352 6880 1.343069 TGCAAAATTTAGGGCCCGTT 58.657 45.000 18.44 7.57 0.00 4.44
5353 6881 1.273886 TGCAAAATTTAGGGCCCGTTC 59.726 47.619 18.44 0.00 0.00 3.95
5354 6882 1.734377 GCAAAATTTAGGGCCCGTTCG 60.734 52.381 18.44 6.69 0.00 3.95
5355 6883 1.135228 CAAAATTTAGGGCCCGTTCGG 60.135 52.381 18.44 4.08 0.00 4.30
5356 6884 0.038599 AAATTTAGGGCCCGTTCGGT 59.961 50.000 18.44 0.00 0.00 4.69
5357 6885 0.678684 AATTTAGGGCCCGTTCGGTG 60.679 55.000 18.44 3.35 0.00 4.94
5358 6886 1.844544 ATTTAGGGCCCGTTCGGTGT 61.845 55.000 18.44 0.00 0.00 4.16
5359 6887 2.453379 TTTAGGGCCCGTTCGGTGTC 62.453 60.000 18.44 3.53 0.00 3.67
5363 6891 4.754667 GCCCGTTCGGTGTCCCTC 62.755 72.222 10.36 0.00 0.00 4.30
5364 6892 4.078516 CCCGTTCGGTGTCCCTCC 62.079 72.222 10.36 0.00 0.00 4.30
5367 6895 3.692406 GTTCGGTGTCCCTCCGCT 61.692 66.667 0.00 0.00 46.49 5.52
5368 6896 3.379445 TTCGGTGTCCCTCCGCTC 61.379 66.667 0.00 0.00 46.49 5.03
5369 6897 4.671590 TCGGTGTCCCTCCGCTCA 62.672 66.667 0.00 0.00 46.49 4.26
5370 6898 3.691342 CGGTGTCCCTCCGCTCAA 61.691 66.667 0.00 0.00 41.48 3.02
5371 6899 2.047179 GGTGTCCCTCCGCTCAAC 60.047 66.667 0.00 0.00 0.00 3.18
5372 6900 2.432628 GTGTCCCTCCGCTCAACG 60.433 66.667 0.00 0.00 43.15 4.10
5383 6911 3.764466 CTCAACGGCTCCGCTCCT 61.764 66.667 8.41 0.00 44.19 3.69
5384 6912 3.997064 CTCAACGGCTCCGCTCCTG 62.997 68.421 8.41 1.54 44.19 3.86
5396 6924 3.522731 CTCCTGGAGCGGACGGAG 61.523 72.222 11.42 0.00 37.33 4.63
5399 6927 4.504916 CTGGAGCGGACGGAGCTG 62.505 72.222 6.28 0.00 46.13 4.24
5405 6933 2.571757 CGGACGGAGCTGCAGTTA 59.428 61.111 16.64 0.00 0.00 2.24
5406 6934 1.080093 CGGACGGAGCTGCAGTTAA 60.080 57.895 16.64 0.00 0.00 2.01
5407 6935 0.669318 CGGACGGAGCTGCAGTTAAA 60.669 55.000 16.64 0.00 0.00 1.52
5408 6936 1.519408 GGACGGAGCTGCAGTTAAAA 58.481 50.000 16.64 0.00 0.00 1.52
5409 6937 2.084546 GGACGGAGCTGCAGTTAAAAT 58.915 47.619 16.64 0.00 0.00 1.82
5410 6938 2.488153 GGACGGAGCTGCAGTTAAAATT 59.512 45.455 16.64 0.00 0.00 1.82
5411 6939 3.426292 GGACGGAGCTGCAGTTAAAATTC 60.426 47.826 16.64 3.70 0.00 2.17
5412 6940 3.412386 ACGGAGCTGCAGTTAAAATTCT 58.588 40.909 16.64 0.14 0.00 2.40
5413 6941 3.821033 ACGGAGCTGCAGTTAAAATTCTT 59.179 39.130 16.64 0.00 0.00 2.52
5414 6942 4.161333 CGGAGCTGCAGTTAAAATTCTTG 58.839 43.478 16.64 0.00 0.00 3.02
5415 6943 4.488879 GGAGCTGCAGTTAAAATTCTTGG 58.511 43.478 16.64 0.00 0.00 3.61
5416 6944 4.218417 GGAGCTGCAGTTAAAATTCTTGGA 59.782 41.667 16.64 0.00 0.00 3.53
5417 6945 5.382618 AGCTGCAGTTAAAATTCTTGGAG 57.617 39.130 16.64 0.00 0.00 3.86
5418 6946 3.922850 GCTGCAGTTAAAATTCTTGGAGC 59.077 43.478 16.64 0.76 32.76 4.70
5419 6947 4.159377 TGCAGTTAAAATTCTTGGAGCG 57.841 40.909 0.00 0.00 0.00 5.03
5420 6948 3.818210 TGCAGTTAAAATTCTTGGAGCGA 59.182 39.130 0.00 0.00 0.00 4.93
5421 6949 4.083324 TGCAGTTAAAATTCTTGGAGCGAG 60.083 41.667 0.00 0.00 0.00 5.03
5422 6950 4.406943 CAGTTAAAATTCTTGGAGCGAGC 58.593 43.478 0.00 0.00 0.00 5.03
5423 6951 4.072131 AGTTAAAATTCTTGGAGCGAGCA 58.928 39.130 0.00 0.00 0.00 4.26
5424 6952 4.518970 AGTTAAAATTCTTGGAGCGAGCAA 59.481 37.500 0.00 0.00 0.00 3.91
5425 6953 5.009610 AGTTAAAATTCTTGGAGCGAGCAAA 59.990 36.000 0.00 0.00 0.00 3.68
5426 6954 2.997485 AATTCTTGGAGCGAGCAAAC 57.003 45.000 0.00 0.00 0.00 2.93
5427 6955 1.896220 ATTCTTGGAGCGAGCAAACA 58.104 45.000 0.00 0.00 0.00 2.83
5428 6956 1.229428 TTCTTGGAGCGAGCAAACAG 58.771 50.000 0.00 0.00 0.00 3.16
5429 6957 0.603707 TCTTGGAGCGAGCAAACAGG 60.604 55.000 0.00 0.00 0.00 4.00
5430 6958 0.886490 CTTGGAGCGAGCAAACAGGT 60.886 55.000 0.00 0.00 0.00 4.00
5431 6959 1.165907 TTGGAGCGAGCAAACAGGTG 61.166 55.000 0.00 0.00 0.00 4.00
5432 6960 2.558313 GAGCGAGCAAACAGGTGC 59.442 61.111 0.00 0.00 45.28 5.01
5438 6966 3.286751 GCAAACAGGTGCTCCGCA 61.287 61.111 0.00 0.00 41.51 5.69
5439 6967 2.949106 CAAACAGGTGCTCCGCAG 59.051 61.111 0.00 0.00 40.08 5.18
5440 6968 1.597854 CAAACAGGTGCTCCGCAGA 60.598 57.895 0.00 0.00 40.08 4.26
5441 6969 0.957395 CAAACAGGTGCTCCGCAGAT 60.957 55.000 0.00 0.00 40.08 2.90
5442 6970 0.674895 AAACAGGTGCTCCGCAGATC 60.675 55.000 0.00 0.00 40.08 2.75
5443 6971 2.202987 CAGGTGCTCCGCAGATCC 60.203 66.667 0.00 0.00 40.08 3.36
5444 6972 2.364842 AGGTGCTCCGCAGATCCT 60.365 61.111 0.00 0.00 40.08 3.24
5445 6973 1.075970 AGGTGCTCCGCAGATCCTA 60.076 57.895 0.00 0.00 40.08 2.94
5446 6974 1.112315 AGGTGCTCCGCAGATCCTAG 61.112 60.000 0.00 0.00 40.08 3.02
5447 6975 1.109920 GGTGCTCCGCAGATCCTAGA 61.110 60.000 0.00 0.00 40.08 2.43
5448 6976 0.747255 GTGCTCCGCAGATCCTAGAA 59.253 55.000 0.00 0.00 40.08 2.10
5449 6977 1.342819 GTGCTCCGCAGATCCTAGAAT 59.657 52.381 0.00 0.00 40.08 2.40
5450 6978 2.042464 TGCTCCGCAGATCCTAGAATT 58.958 47.619 0.00 0.00 33.32 2.17
5451 6979 2.435805 TGCTCCGCAGATCCTAGAATTT 59.564 45.455 0.00 0.00 33.32 1.82
5452 6980 3.118261 TGCTCCGCAGATCCTAGAATTTT 60.118 43.478 0.00 0.00 33.32 1.82
5453 6981 4.100963 TGCTCCGCAGATCCTAGAATTTTA 59.899 41.667 0.00 0.00 33.32 1.52
5454 6982 5.057149 GCTCCGCAGATCCTAGAATTTTAA 58.943 41.667 0.00 0.00 0.00 1.52
5455 6983 5.178438 GCTCCGCAGATCCTAGAATTTTAAG 59.822 44.000 0.00 0.00 0.00 1.85
5456 6984 5.611374 TCCGCAGATCCTAGAATTTTAAGG 58.389 41.667 0.00 0.00 0.00 2.69
5457 6985 5.365605 TCCGCAGATCCTAGAATTTTAAGGA 59.634 40.000 6.78 6.78 43.38 3.36
5458 6986 5.698545 CCGCAGATCCTAGAATTTTAAGGAG 59.301 44.000 9.43 0.33 42.53 3.69
5459 6987 5.178438 CGCAGATCCTAGAATTTTAAGGAGC 59.822 44.000 10.36 10.36 44.40 4.70
5463 6991 6.582929 ATCCTAGAATTTTAAGGAGCTGGT 57.417 37.500 0.00 0.00 42.53 4.00
5464 6992 5.745227 TCCTAGAATTTTAAGGAGCTGGTG 58.255 41.667 0.00 0.00 34.46 4.17
5465 6993 4.884164 CCTAGAATTTTAAGGAGCTGGTGG 59.116 45.833 0.00 0.00 31.64 4.61
5466 6994 4.657814 AGAATTTTAAGGAGCTGGTGGA 57.342 40.909 0.00 0.00 0.00 4.02
5467 6995 5.198602 AGAATTTTAAGGAGCTGGTGGAT 57.801 39.130 0.00 0.00 0.00 3.41
5468 6996 5.583932 AGAATTTTAAGGAGCTGGTGGATT 58.416 37.500 0.00 0.00 0.00 3.01
5469 6997 5.420104 AGAATTTTAAGGAGCTGGTGGATTG 59.580 40.000 0.00 0.00 0.00 2.67
5470 6998 2.128771 TTAAGGAGCTGGTGGATTGC 57.871 50.000 0.00 0.00 0.00 3.56
5471 6999 0.255890 TAAGGAGCTGGTGGATTGCC 59.744 55.000 0.00 0.00 0.00 4.52
5472 7000 2.825836 GGAGCTGGTGGATTGCCG 60.826 66.667 0.00 0.00 36.79 5.69
5473 7001 2.268920 GAGCTGGTGGATTGCCGA 59.731 61.111 0.00 0.00 36.79 5.54
5474 7002 1.377202 GAGCTGGTGGATTGCCGAA 60.377 57.895 0.00 0.00 36.79 4.30
5475 7003 1.648467 GAGCTGGTGGATTGCCGAAC 61.648 60.000 0.00 0.00 36.79 3.95
5476 7004 1.971167 GCTGGTGGATTGCCGAACA 60.971 57.895 0.00 0.00 36.79 3.18
5477 7005 1.523154 GCTGGTGGATTGCCGAACAA 61.523 55.000 0.00 0.00 44.01 2.83
5478 7006 0.523072 CTGGTGGATTGCCGAACAAG 59.477 55.000 0.00 0.00 42.87 3.16
5479 7007 0.179004 TGGTGGATTGCCGAACAAGT 60.179 50.000 0.00 0.00 42.87 3.16
5480 7008 0.521735 GGTGGATTGCCGAACAAGTC 59.478 55.000 0.00 0.00 42.87 3.01
5481 7009 0.521735 GTGGATTGCCGAACAAGTCC 59.478 55.000 0.00 0.00 42.87 3.85
5488 7016 1.689813 TGCCGAACAAGTCCTTACTCA 59.310 47.619 0.00 0.00 33.75 3.41
5771 7408 3.967332 CAAGTTCCCCTTGCAATTGAT 57.033 42.857 10.34 0.00 43.84 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.434359 GGCACTGGCAGTACCGAC 60.434 66.667 20.65 7.37 43.94 4.79
1 2 2.920384 TGGCACTGGCAGTACCGA 60.920 61.111 27.41 16.17 43.94 4.69
37 38 1.817099 GAGGGAGCGGCTGAACATG 60.817 63.158 7.50 0.00 0.00 3.21
57 58 1.794151 TTCGTCGCCTGGACACGTTA 61.794 55.000 14.97 5.11 46.42 3.18
72 74 4.421479 CTCGTGCGCCTCCTTCGT 62.421 66.667 4.18 0.00 0.00 3.85
106 108 3.365265 GGCAAGGGGAAGCACACG 61.365 66.667 0.00 0.00 0.00 4.49
161 163 2.811317 GCTTCCTCGCCAGTGACG 60.811 66.667 0.00 0.00 0.00 4.35
196 198 1.295423 CCGACCCAACTCATCCGTT 59.705 57.895 0.00 0.00 0.00 4.44
201 203 1.953686 CAACAAACCGACCCAACTCAT 59.046 47.619 0.00 0.00 0.00 2.90
202 204 1.065345 TCAACAAACCGACCCAACTCA 60.065 47.619 0.00 0.00 0.00 3.41
215 553 2.034053 CGCTTAGGGCAACTTCAACAAA 59.966 45.455 0.00 0.00 41.91 2.83
241 579 1.677576 AGTTGTCGTGTCAACCGTCTA 59.322 47.619 13.67 0.00 45.90 2.59
251 589 1.350193 GCATCGATCAGTTGTCGTGT 58.650 50.000 0.00 0.00 39.91 4.49
256 594 0.807667 GCCTCGCATCGATCAGTTGT 60.808 55.000 0.00 0.00 34.61 3.32
257 595 0.807275 TGCCTCGCATCGATCAGTTG 60.807 55.000 0.00 0.00 34.61 3.16
313 651 1.520494 ATGCGCATAGATGAAGGCTG 58.480 50.000 24.02 0.00 0.00 4.85
343 681 9.974980 TTAGTTCGCTGTATGACATATTTCATA 57.025 29.630 7.37 7.37 37.42 2.15
344 682 8.887036 TTAGTTCGCTGTATGACATATTTCAT 57.113 30.769 9.25 9.25 39.61 2.57
345 683 7.042725 GCTTAGTTCGCTGTATGACATATTTCA 60.043 37.037 0.00 0.00 0.00 2.69
346 684 7.284351 GCTTAGTTCGCTGTATGACATATTTC 58.716 38.462 0.00 0.00 0.00 2.17
348 686 5.696724 GGCTTAGTTCGCTGTATGACATATT 59.303 40.000 0.00 0.00 0.00 1.28
349 687 5.230942 GGCTTAGTTCGCTGTATGACATAT 58.769 41.667 0.00 0.00 0.00 1.78
350 688 4.617959 GGCTTAGTTCGCTGTATGACATA 58.382 43.478 0.00 0.00 0.00 2.29
351 689 3.458189 GGCTTAGTTCGCTGTATGACAT 58.542 45.455 0.00 0.00 0.00 3.06
352 690 2.734175 CGGCTTAGTTCGCTGTATGACA 60.734 50.000 0.00 0.00 0.00 3.58
353 691 1.852895 CGGCTTAGTTCGCTGTATGAC 59.147 52.381 0.00 0.00 0.00 3.06
354 692 1.475280 ACGGCTTAGTTCGCTGTATGA 59.525 47.619 0.00 0.00 44.63 2.15
355 693 1.588404 CACGGCTTAGTTCGCTGTATG 59.412 52.381 0.00 0.00 44.67 2.39
356 694 1.203994 ACACGGCTTAGTTCGCTGTAT 59.796 47.619 0.00 0.00 44.67 2.29
357 695 0.599558 ACACGGCTTAGTTCGCTGTA 59.400 50.000 0.00 0.00 44.67 2.74
359 697 0.865769 AAACACGGCTTAGTTCGCTG 59.134 50.000 0.00 0.00 39.62 5.18
360 698 0.865769 CAAACACGGCTTAGTTCGCT 59.134 50.000 0.00 0.00 0.00 4.93
361 699 0.110373 CCAAACACGGCTTAGTTCGC 60.110 55.000 0.00 0.00 0.00 4.70
362 700 1.504359 TCCAAACACGGCTTAGTTCG 58.496 50.000 0.00 0.00 0.00 3.95
363 701 2.161609 CCATCCAAACACGGCTTAGTTC 59.838 50.000 0.00 0.00 0.00 3.01
364 702 2.159382 CCATCCAAACACGGCTTAGTT 58.841 47.619 0.00 0.00 0.00 2.24
365 703 1.073284 ACCATCCAAACACGGCTTAGT 59.927 47.619 0.00 0.00 0.00 2.24
366 704 1.821216 ACCATCCAAACACGGCTTAG 58.179 50.000 0.00 0.00 0.00 2.18
367 705 2.279935 AACCATCCAAACACGGCTTA 57.720 45.000 0.00 0.00 0.00 3.09
368 706 2.159382 CTAACCATCCAAACACGGCTT 58.841 47.619 0.00 0.00 0.00 4.35
369 707 1.349688 TCTAACCATCCAAACACGGCT 59.650 47.619 0.00 0.00 0.00 5.52
370 708 1.737793 CTCTAACCATCCAAACACGGC 59.262 52.381 0.00 0.00 0.00 5.68
371 709 2.356135 CCTCTAACCATCCAAACACGG 58.644 52.381 0.00 0.00 0.00 4.94
372 710 2.027561 TCCCTCTAACCATCCAAACACG 60.028 50.000 0.00 0.00 0.00 4.49
373 711 3.244770 TGTCCCTCTAACCATCCAAACAC 60.245 47.826 0.00 0.00 0.00 3.32
374 712 2.983192 TGTCCCTCTAACCATCCAAACA 59.017 45.455 0.00 0.00 0.00 2.83
375 713 3.009143 ACTGTCCCTCTAACCATCCAAAC 59.991 47.826 0.00 0.00 0.00 2.93
376 714 3.256704 ACTGTCCCTCTAACCATCCAAA 58.743 45.455 0.00 0.00 0.00 3.28
377 715 2.915869 ACTGTCCCTCTAACCATCCAA 58.084 47.619 0.00 0.00 0.00 3.53
378 716 2.642171 ACTGTCCCTCTAACCATCCA 57.358 50.000 0.00 0.00 0.00 3.41
379 717 3.644335 ACTACTGTCCCTCTAACCATCC 58.356 50.000 0.00 0.00 0.00 3.51
380 718 6.308566 AGATACTACTGTCCCTCTAACCATC 58.691 44.000 0.00 0.00 0.00 3.51
381 719 6.103501 AGAGATACTACTGTCCCTCTAACCAT 59.896 42.308 0.00 0.00 35.11 3.55
382 720 5.432390 AGAGATACTACTGTCCCTCTAACCA 59.568 44.000 0.00 0.00 35.11 3.67
383 721 5.944135 AGAGATACTACTGTCCCTCTAACC 58.056 45.833 0.00 0.00 35.11 2.85
384 722 6.593807 TGAGAGATACTACTGTCCCTCTAAC 58.406 44.000 0.00 0.00 36.17 2.34
385 723 6.826632 TGAGAGATACTACTGTCCCTCTAA 57.173 41.667 0.00 0.00 36.17 2.10
386 724 6.826632 TTGAGAGATACTACTGTCCCTCTA 57.173 41.667 0.00 0.00 36.17 2.43
387 725 5.718801 TTGAGAGATACTACTGTCCCTCT 57.281 43.478 0.00 0.00 37.61 3.69
388 726 5.475564 GGATTGAGAGATACTACTGTCCCTC 59.524 48.000 0.00 0.00 30.60 4.30
389 727 5.103473 TGGATTGAGAGATACTACTGTCCCT 60.103 44.000 0.00 0.00 30.60 4.20
390 728 5.141182 TGGATTGAGAGATACTACTGTCCC 58.859 45.833 0.00 0.00 30.60 4.46
391 729 6.491745 TGATGGATTGAGAGATACTACTGTCC 59.508 42.308 0.00 0.00 30.60 4.02
392 730 7.309133 CCTGATGGATTGAGAGATACTACTGTC 60.309 44.444 0.00 0.00 34.57 3.51
393 731 6.493115 CCTGATGGATTGAGAGATACTACTGT 59.507 42.308 0.00 0.00 34.57 3.55
394 732 6.718912 TCCTGATGGATTGAGAGATACTACTG 59.281 42.308 0.00 0.00 37.46 2.74
395 733 6.857848 TCCTGATGGATTGAGAGATACTACT 58.142 40.000 0.00 0.00 37.46 2.57
418 756 1.064654 GCGAGCACCAGGATTTGAATC 59.935 52.381 0.00 0.00 34.66 2.52
419 757 1.098050 GCGAGCACCAGGATTTGAAT 58.902 50.000 0.00 0.00 0.00 2.57
420 758 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
421 759 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
422 760 1.667236 TATGCGAGCACCAGGATTTG 58.333 50.000 0.00 0.00 0.00 2.32
423 761 2.418368 TTATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 0.00 2.17
424 762 2.645838 ATTATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 0.00 3.01
425 763 2.645838 AATTATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
426 764 2.092968 AGAAATTATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
427 765 2.032550 CAGAAATTATGCGAGCACCAGG 59.967 50.000 0.00 0.00 0.00 4.45
428 766 2.938451 TCAGAAATTATGCGAGCACCAG 59.062 45.455 0.00 0.00 0.00 4.00
429 767 2.984562 TCAGAAATTATGCGAGCACCA 58.015 42.857 0.00 0.00 0.00 4.17
430 768 4.558538 ATTCAGAAATTATGCGAGCACC 57.441 40.909 0.00 0.00 0.00 5.01
431 769 8.566008 AATAAATTCAGAAATTATGCGAGCAC 57.434 30.769 0.00 0.00 33.93 4.40
432 770 9.585099 AAAATAAATTCAGAAATTATGCGAGCA 57.415 25.926 4.51 0.00 33.93 4.26
444 782 9.581099 GCCGAAAATCCTAAAATAAATTCAGAA 57.419 29.630 0.00 0.00 0.00 3.02
445 783 8.744652 TGCCGAAAATCCTAAAATAAATTCAGA 58.255 29.630 0.00 0.00 0.00 3.27
446 784 8.925161 TGCCGAAAATCCTAAAATAAATTCAG 57.075 30.769 0.00 0.00 0.00 3.02
447 785 9.883142 ATTGCCGAAAATCCTAAAATAAATTCA 57.117 25.926 0.00 0.00 0.00 2.57
449 787 8.611757 GCATTGCCGAAAATCCTAAAATAAATT 58.388 29.630 0.00 0.00 0.00 1.82
450 788 7.768120 TGCATTGCCGAAAATCCTAAAATAAAT 59.232 29.630 6.12 0.00 0.00 1.40
451 789 7.064016 GTGCATTGCCGAAAATCCTAAAATAAA 59.936 33.333 6.12 0.00 0.00 1.40
452 790 6.533367 GTGCATTGCCGAAAATCCTAAAATAA 59.467 34.615 6.12 0.00 0.00 1.40
453 791 6.039616 GTGCATTGCCGAAAATCCTAAAATA 58.960 36.000 6.12 0.00 0.00 1.40
454 792 4.869861 GTGCATTGCCGAAAATCCTAAAAT 59.130 37.500 6.12 0.00 0.00 1.82
455 793 4.241681 GTGCATTGCCGAAAATCCTAAAA 58.758 39.130 6.12 0.00 0.00 1.52
456 794 3.256879 TGTGCATTGCCGAAAATCCTAAA 59.743 39.130 6.12 0.00 0.00 1.85
457 795 2.822561 TGTGCATTGCCGAAAATCCTAA 59.177 40.909 6.12 0.00 0.00 2.69
458 796 2.441410 TGTGCATTGCCGAAAATCCTA 58.559 42.857 6.12 0.00 0.00 2.94
459 797 1.255882 TGTGCATTGCCGAAAATCCT 58.744 45.000 6.12 0.00 0.00 3.24
460 798 2.298411 ATGTGCATTGCCGAAAATCC 57.702 45.000 6.12 0.00 0.00 3.01
461 799 3.252400 TGAATGTGCATTGCCGAAAATC 58.748 40.909 6.12 0.00 0.00 2.17
462 800 3.255725 CTGAATGTGCATTGCCGAAAAT 58.744 40.909 6.12 0.00 0.00 1.82
463 801 2.035704 ACTGAATGTGCATTGCCGAAAA 59.964 40.909 6.12 0.00 0.00 2.29
464 802 1.612950 ACTGAATGTGCATTGCCGAAA 59.387 42.857 6.12 0.00 0.00 3.46
465 803 1.068402 CACTGAATGTGCATTGCCGAA 60.068 47.619 6.12 0.00 40.06 4.30
466 804 0.522626 CACTGAATGTGCATTGCCGA 59.477 50.000 6.12 0.00 40.06 5.54
467 805 0.522626 TCACTGAATGTGCATTGCCG 59.477 50.000 6.12 0.00 45.81 5.69
468 806 1.814394 TCTCACTGAATGTGCATTGCC 59.186 47.619 6.12 0.00 45.81 4.52
469 807 2.159421 CCTCTCACTGAATGTGCATTGC 60.159 50.000 0.46 0.46 45.81 3.56
470 808 3.340928 TCCTCTCACTGAATGTGCATTG 58.659 45.455 1.77 0.00 45.81 2.82
471 809 3.262660 TCTCCTCTCACTGAATGTGCATT 59.737 43.478 0.00 0.00 45.81 3.56
472 810 2.836372 TCTCCTCTCACTGAATGTGCAT 59.164 45.455 0.00 0.00 45.81 3.96
473 811 2.250924 TCTCCTCTCACTGAATGTGCA 58.749 47.619 0.00 0.00 45.81 4.57
474 812 3.196463 CATCTCCTCTCACTGAATGTGC 58.804 50.000 0.00 0.00 45.81 4.57
475 813 6.139590 GGAACATCTCCTCTCACTGAATGTG 61.140 48.000 0.00 0.00 43.42 3.21
476 814 4.081198 GGAACATCTCCTCTCACTGAATGT 60.081 45.833 0.00 0.00 41.61 2.71
477 815 4.440880 GGAACATCTCCTCTCACTGAATG 58.559 47.826 0.00 0.00 41.61 2.67
478 816 3.454082 GGGAACATCTCCTCTCACTGAAT 59.546 47.826 0.00 0.00 44.68 2.57
479 817 2.834549 GGGAACATCTCCTCTCACTGAA 59.165 50.000 0.00 0.00 44.68 3.02
480 818 2.461695 GGGAACATCTCCTCTCACTGA 58.538 52.381 0.00 0.00 44.68 3.41
481 819 1.135915 CGGGAACATCTCCTCTCACTG 59.864 57.143 0.00 0.00 44.68 3.66
482 820 1.272760 ACGGGAACATCTCCTCTCACT 60.273 52.381 0.00 0.00 44.68 3.41
483 821 1.135333 GACGGGAACATCTCCTCTCAC 59.865 57.143 0.00 0.00 44.68 3.51
484 822 1.475403 GACGGGAACATCTCCTCTCA 58.525 55.000 0.00 0.00 44.68 3.27
485 823 0.382515 CGACGGGAACATCTCCTCTC 59.617 60.000 0.00 0.00 44.68 3.20
486 824 0.034380 TCGACGGGAACATCTCCTCT 60.034 55.000 0.00 0.00 44.68 3.69
487 825 1.033574 ATCGACGGGAACATCTCCTC 58.966 55.000 0.00 0.00 44.68 3.71
488 826 0.747255 CATCGACGGGAACATCTCCT 59.253 55.000 0.00 0.00 44.68 3.69
489 827 0.744874 TCATCGACGGGAACATCTCC 59.255 55.000 0.00 0.00 44.54 3.71
490 828 1.841450 GTCATCGACGGGAACATCTC 58.159 55.000 0.00 0.00 0.00 2.75
503 841 2.357543 CGTAGGCGCATCGTCATCG 61.358 63.158 10.83 0.00 32.13 3.84
504 842 2.016704 CCGTAGGCGCATCGTCATC 61.017 63.158 10.83 0.00 46.14 2.92
505 843 2.027605 CCGTAGGCGCATCGTCAT 59.972 61.111 10.83 0.00 46.14 3.06
521 859 7.118680 TGTCATCTTTAAATTTACGGAGTCACC 59.881 37.037 0.00 0.00 43.93 4.02
522 860 8.025243 TGTCATCTTTAAATTTACGGAGTCAC 57.975 34.615 0.00 0.00 43.93 3.67
523 861 8.610248 TTGTCATCTTTAAATTTACGGAGTCA 57.390 30.769 0.00 0.00 43.93 3.41
524 862 7.692705 GCTTGTCATCTTTAAATTTACGGAGTC 59.307 37.037 0.00 0.00 43.93 3.36
526 864 6.967199 GGCTTGTCATCTTTAAATTTACGGAG 59.033 38.462 0.00 0.00 0.00 4.63
527 865 6.402766 CGGCTTGTCATCTTTAAATTTACGGA 60.403 38.462 0.00 0.00 0.00 4.69
528 866 5.737290 CGGCTTGTCATCTTTAAATTTACGG 59.263 40.000 0.00 0.00 0.00 4.02
529 867 6.464834 GTCGGCTTGTCATCTTTAAATTTACG 59.535 38.462 0.00 0.00 0.00 3.18
530 868 7.527457 AGTCGGCTTGTCATCTTTAAATTTAC 58.473 34.615 0.00 0.00 0.00 2.01
531 869 7.389330 TGAGTCGGCTTGTCATCTTTAAATTTA 59.611 33.333 0.00 0.00 0.00 1.40
532 870 6.206634 TGAGTCGGCTTGTCATCTTTAAATTT 59.793 34.615 0.00 0.00 0.00 1.82
533 871 5.705441 TGAGTCGGCTTGTCATCTTTAAATT 59.295 36.000 0.00 0.00 0.00 1.82
534 872 5.245531 TGAGTCGGCTTGTCATCTTTAAAT 58.754 37.500 0.00 0.00 0.00 1.40
535 873 4.637276 TGAGTCGGCTTGTCATCTTTAAA 58.363 39.130 0.00 0.00 0.00 1.52
536 874 4.245660 CTGAGTCGGCTTGTCATCTTTAA 58.754 43.478 0.00 0.00 0.00 1.52
537 875 3.258372 ACTGAGTCGGCTTGTCATCTTTA 59.742 43.478 0.00 0.00 0.00 1.85
538 876 2.037772 ACTGAGTCGGCTTGTCATCTTT 59.962 45.455 0.00 0.00 0.00 2.52
539 877 1.620819 ACTGAGTCGGCTTGTCATCTT 59.379 47.619 0.00 0.00 0.00 2.40
540 878 1.203523 GACTGAGTCGGCTTGTCATCT 59.796 52.381 15.92 0.00 32.61 2.90
541 879 1.203523 AGACTGAGTCGGCTTGTCATC 59.796 52.381 20.67 3.91 37.67 2.92
542 880 1.203523 GAGACTGAGTCGGCTTGTCAT 59.796 52.381 20.67 9.86 37.67 3.06
543 881 0.598562 GAGACTGAGTCGGCTTGTCA 59.401 55.000 20.67 2.56 37.67 3.58
544 882 0.885196 AGAGACTGAGTCGGCTTGTC 59.115 55.000 13.83 13.83 37.67 3.18
545 883 0.885196 GAGAGACTGAGTCGGCTTGT 59.115 55.000 6.99 0.00 37.67 3.16
546 884 0.179176 CGAGAGACTGAGTCGGCTTG 60.179 60.000 6.99 8.85 37.67 4.01
547 885 1.309499 CCGAGAGACTGAGTCGGCTT 61.309 60.000 6.99 0.00 46.18 4.35
548 886 1.747367 CCGAGAGACTGAGTCGGCT 60.747 63.158 6.99 8.75 46.18 5.52
549 887 2.795297 CCGAGAGACTGAGTCGGC 59.205 66.667 6.99 3.72 46.18 5.54
551 889 0.391927 ACCTCCGAGAGACTGAGTCG 60.392 60.000 6.99 0.00 37.67 4.18
552 890 1.091537 CACCTCCGAGAGACTGAGTC 58.908 60.000 3.98 3.98 0.00 3.36
553 891 0.963355 GCACCTCCGAGAGACTGAGT 60.963 60.000 0.00 0.00 0.00 3.41
554 892 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
555 893 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
556 894 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
557 895 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
558 896 1.681538 TATGAGCACCTCCGAGAGAC 58.318 55.000 0.00 0.00 0.00 3.36
559 897 2.234143 CATATGAGCACCTCCGAGAGA 58.766 52.381 0.00 0.00 0.00 3.10
560 898 1.336702 GCATATGAGCACCTCCGAGAG 60.337 57.143 6.97 0.00 0.00 3.20
561 899 0.676184 GCATATGAGCACCTCCGAGA 59.324 55.000 6.97 0.00 0.00 4.04
562 900 0.665670 CGCATATGAGCACCTCCGAG 60.666 60.000 6.97 0.00 0.00 4.63
563 901 1.363807 CGCATATGAGCACCTCCGA 59.636 57.895 6.97 0.00 0.00 4.55
564 902 1.068083 ACGCATATGAGCACCTCCG 59.932 57.895 6.97 0.02 0.00 4.63
565 903 0.179073 ACACGCATATGAGCACCTCC 60.179 55.000 6.97 0.00 0.00 4.30
566 904 0.933097 CACACGCATATGAGCACCTC 59.067 55.000 6.97 0.00 0.00 3.85
567 905 0.250234 ACACACGCATATGAGCACCT 59.750 50.000 6.97 0.00 0.00 4.00
568 906 0.374758 CACACACGCATATGAGCACC 59.625 55.000 6.97 0.00 0.00 5.01
569 907 0.247814 GCACACACGCATATGAGCAC 60.248 55.000 6.97 0.00 0.00 4.40
570 908 1.694955 CGCACACACGCATATGAGCA 61.695 55.000 6.97 0.00 0.00 4.26
571 909 1.011904 CGCACACACGCATATGAGC 60.012 57.895 6.97 0.00 0.00 4.26
572 910 0.721154 AACGCACACACGCATATGAG 59.279 50.000 6.97 5.79 36.19 2.90
573 911 1.152510 AAACGCACACACGCATATGA 58.847 45.000 6.97 0.00 36.19 2.15
574 912 2.796976 TAAACGCACACACGCATATG 57.203 45.000 0.00 0.00 36.19 1.78
575 913 4.084066 CCATATAAACGCACACACGCATAT 60.084 41.667 0.00 0.00 36.19 1.78
576 914 3.246463 CCATATAAACGCACACACGCATA 59.754 43.478 0.00 0.00 36.19 3.14
577 915 2.031560 CCATATAAACGCACACACGCAT 59.968 45.455 0.00 0.00 36.19 4.73
578 916 1.395262 CCATATAAACGCACACACGCA 59.605 47.619 0.00 0.00 36.19 5.24
579 917 1.661617 TCCATATAAACGCACACACGC 59.338 47.619 0.00 0.00 36.19 5.34
580 918 3.553917 TCATCCATATAAACGCACACACG 59.446 43.478 0.00 0.00 39.50 4.49
581 919 4.570772 ACTCATCCATATAAACGCACACAC 59.429 41.667 0.00 0.00 0.00 3.82
582 920 4.570369 CACTCATCCATATAAACGCACACA 59.430 41.667 0.00 0.00 0.00 3.72
583 921 4.570772 ACACTCATCCATATAAACGCACAC 59.429 41.667 0.00 0.00 0.00 3.82
584 922 4.765273 ACACTCATCCATATAAACGCACA 58.235 39.130 0.00 0.00 0.00 4.57
585 923 6.423905 ACATACACTCATCCATATAAACGCAC 59.576 38.462 0.00 0.00 0.00 5.34
586 924 6.423604 CACATACACTCATCCATATAAACGCA 59.576 38.462 0.00 0.00 0.00 5.24
587 925 6.618592 GCACATACACTCATCCATATAAACGC 60.619 42.308 0.00 0.00 0.00 4.84
588 926 6.399986 CGCACATACACTCATCCATATAAACG 60.400 42.308 0.00 0.00 0.00 3.60
589 927 6.423905 ACGCACATACACTCATCCATATAAAC 59.576 38.462 0.00 0.00 0.00 2.01
590 928 6.521162 ACGCACATACACTCATCCATATAAA 58.479 36.000 0.00 0.00 0.00 1.40
591 929 6.096673 ACGCACATACACTCATCCATATAA 57.903 37.500 0.00 0.00 0.00 0.98
592 930 5.722021 ACGCACATACACTCATCCATATA 57.278 39.130 0.00 0.00 0.00 0.86
593 931 4.607293 ACGCACATACACTCATCCATAT 57.393 40.909 0.00 0.00 0.00 1.78
594 932 5.722021 ATACGCACATACACTCATCCATA 57.278 39.130 0.00 0.00 0.00 2.74
595 933 2.988010 ACGCACATACACTCATCCAT 57.012 45.000 0.00 0.00 0.00 3.41
596 934 5.722021 ATATACGCACATACACTCATCCA 57.278 39.130 0.00 0.00 0.00 3.41
597 935 7.480810 TCATATATACGCACATACACTCATCC 58.519 38.462 0.00 0.00 0.00 3.51
598 936 7.166638 GCTCATATATACGCACATACACTCATC 59.833 40.741 1.66 0.00 0.00 2.92
599 937 6.975197 GCTCATATATACGCACATACACTCAT 59.025 38.462 1.66 0.00 0.00 2.90
600 938 6.322491 GCTCATATATACGCACATACACTCA 58.678 40.000 1.66 0.00 0.00 3.41
601 939 5.452623 CGCTCATATATACGCACATACACTC 59.547 44.000 6.32 0.00 0.00 3.51
602 940 5.332707 CGCTCATATATACGCACATACACT 58.667 41.667 6.32 0.00 0.00 3.55
603 941 5.606335 CGCTCATATATACGCACATACAC 57.394 43.478 6.32 0.00 0.00 2.90
612 950 3.179830 GACCCAAGCGCTCATATATACG 58.820 50.000 12.06 0.00 0.00 3.06
613 951 3.179830 CGACCCAAGCGCTCATATATAC 58.820 50.000 12.06 0.00 0.00 1.47
614 952 2.165641 CCGACCCAAGCGCTCATATATA 59.834 50.000 12.06 0.00 0.00 0.86
615 953 1.066858 CCGACCCAAGCGCTCATATAT 60.067 52.381 12.06 0.00 0.00 0.86
616 954 0.317160 CCGACCCAAGCGCTCATATA 59.683 55.000 12.06 0.00 0.00 0.86
617 955 1.069765 CCGACCCAAGCGCTCATAT 59.930 57.895 12.06 0.00 0.00 1.78
618 956 1.038681 TACCGACCCAAGCGCTCATA 61.039 55.000 12.06 0.00 0.00 2.15
619 957 2.355986 TACCGACCCAAGCGCTCAT 61.356 57.895 12.06 0.00 0.00 2.90
620 958 2.992689 TACCGACCCAAGCGCTCA 60.993 61.111 12.06 0.00 0.00 4.26
621 959 1.660560 TAGTACCGACCCAAGCGCTC 61.661 60.000 12.06 0.00 0.00 5.03
622 960 1.252904 TTAGTACCGACCCAAGCGCT 61.253 55.000 2.64 2.64 0.00 5.92
623 961 0.179092 ATTAGTACCGACCCAAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
624 962 1.134907 ACATTAGTACCGACCCAAGCG 60.135 52.381 0.00 0.00 0.00 4.68
625 963 2.685850 ACATTAGTACCGACCCAAGC 57.314 50.000 0.00 0.00 0.00 4.01
626 964 4.081862 TCTGAACATTAGTACCGACCCAAG 60.082 45.833 0.00 0.00 0.00 3.61
627 965 3.833650 TCTGAACATTAGTACCGACCCAA 59.166 43.478 0.00 0.00 0.00 4.12
628 966 3.433343 TCTGAACATTAGTACCGACCCA 58.567 45.455 0.00 0.00 0.00 4.51
629 967 4.460948 TTCTGAACATTAGTACCGACCC 57.539 45.455 0.00 0.00 0.00 4.46
630 968 6.790285 TTTTTCTGAACATTAGTACCGACC 57.210 37.500 0.00 0.00 0.00 4.79
656 994 9.897744 CAATAATCGTGTATGGCATATTTCTTT 57.102 29.630 10.92 5.52 0.00 2.52
657 995 8.514594 CCAATAATCGTGTATGGCATATTTCTT 58.485 33.333 10.92 4.40 0.00 2.52
658 996 7.882791 TCCAATAATCGTGTATGGCATATTTCT 59.117 33.333 10.92 0.00 0.00 2.52
874 1515 3.717294 GGTGGACGGGCAGGATGT 61.717 66.667 0.00 0.00 39.31 3.06
1018 1659 1.770324 GCTAGATGGGGAATGGGGG 59.230 63.158 0.00 0.00 0.00 5.40
1019 1660 1.770324 GGCTAGATGGGGAATGGGG 59.230 63.158 0.00 0.00 0.00 4.96
1020 1661 1.376466 CGGCTAGATGGGGAATGGG 59.624 63.158 0.00 0.00 0.00 4.00
1021 1662 1.276421 CTACGGCTAGATGGGGAATGG 59.724 57.143 0.00 0.00 0.00 3.16
1022 1663 1.338200 GCTACGGCTAGATGGGGAATG 60.338 57.143 0.00 0.00 35.22 2.67
1023 1664 0.977395 GCTACGGCTAGATGGGGAAT 59.023 55.000 0.00 0.00 35.22 3.01
1024 1665 2.437625 GCTACGGCTAGATGGGGAA 58.562 57.895 0.00 0.00 35.22 3.97
1025 1666 4.192950 GCTACGGCTAGATGGGGA 57.807 61.111 0.00 0.00 35.22 4.81
1035 1676 4.764308 AGGGTTTATAGTACTAGCTACGGC 59.236 45.833 8.85 0.00 39.06 5.68
1036 1677 6.597280 CCTAGGGTTTATAGTACTAGCTACGG 59.403 46.154 8.85 0.16 31.96 4.02
1037 1678 6.597280 CCCTAGGGTTTATAGTACTAGCTACG 59.403 46.154 20.88 0.00 31.96 3.51
1112 2068 1.447314 GCTTCGAACCCCTGGTACG 60.447 63.158 0.00 0.00 33.12 3.67
1116 2072 4.778143 CCCGCTTCGAACCCCTGG 62.778 72.222 0.00 0.00 0.00 4.45
1332 2290 1.200020 GGAAAGCAATGAAGACCACCG 59.800 52.381 0.00 0.00 0.00 4.94
1377 2335 3.981212 AGAAATGGATGGGGAAAATCGT 58.019 40.909 0.00 0.00 0.00 3.73
1443 2404 2.538141 CCTTCCAGCCCTGTTCCCA 61.538 63.158 0.00 0.00 0.00 4.37
1448 2409 1.333636 CGAGATCCTTCCAGCCCTGT 61.334 60.000 0.00 0.00 0.00 4.00
1587 2548 0.671251 AGAAGAGATGCGGATCGGTC 59.329 55.000 11.52 9.87 33.34 4.79
1642 2603 2.761208 CGTCCTCTTGAGTTCCCTATGT 59.239 50.000 0.00 0.00 0.00 2.29
1804 2765 1.448540 CGTAGCCTTCACAGCCCAG 60.449 63.158 0.00 0.00 0.00 4.45
1900 2861 7.771927 ACTTGATCTGAAGAAATTGGTCATT 57.228 32.000 0.07 0.00 0.00 2.57
2020 2983 5.239744 AGGCACTATACACGTTCATCTAGAG 59.760 44.000 0.00 0.00 36.02 2.43
2185 3162 1.468520 CAAGTGCCGGTGGAAATGTAG 59.531 52.381 1.90 0.00 0.00 2.74
2200 3177 6.992063 AGAGCTACCAACAATAATCAAGTG 57.008 37.500 0.00 0.00 0.00 3.16
2435 3413 4.023193 CCAAAACCTGACAGTACCAATCAC 60.023 45.833 0.93 0.00 0.00 3.06
2443 3421 3.673543 AAACCCCAAAACCTGACAGTA 57.326 42.857 0.93 0.00 0.00 2.74
2527 3505 9.121517 CAGAAGTAGCACAAAATTATTCAAGTG 57.878 33.333 0.00 0.00 0.00 3.16
2663 3641 5.399301 CAGTTCCTTCACAACAATTAAAGCG 59.601 40.000 0.00 0.00 0.00 4.68
2675 3653 1.597854 CCGCAGCAGTTCCTTCACA 60.598 57.895 0.00 0.00 0.00 3.58
2679 3657 1.067071 GTACTACCGCAGCAGTTCCTT 60.067 52.381 0.00 0.00 0.00 3.36
2718 3696 7.776933 TTCCTCTGATCTGAAATTATTGTCG 57.223 36.000 3.72 0.00 0.00 4.35
2731 3709 6.876257 GCACGGAAATAATATTCCTCTGATCT 59.124 38.462 4.71 0.00 45.54 2.75
2806 3790 4.965814 TCATGAGCACAAGAATATCCTCC 58.034 43.478 0.00 0.00 0.00 4.30
2958 3963 1.107945 GAGGTAGCCTCTCCACTCAC 58.892 60.000 7.86 0.00 46.41 3.51
2959 3964 3.598273 GAGGTAGCCTCTCCACTCA 57.402 57.895 7.86 0.00 46.41 3.41
3090 4114 9.662947 AGTGCCGAAAACTAAAACTAATATAGT 57.337 29.630 0.00 0.00 41.73 2.12
3111 4135 4.461198 ACTGGTAGCCAAATAATAGTGCC 58.539 43.478 0.00 0.00 30.80 5.01
3125 4151 5.728351 TTGCGATAAACAATACTGGTAGC 57.272 39.130 0.00 0.00 0.00 3.58
3145 4171 7.133891 ACTGATGATAGAAAGAAACGGTTTG 57.866 36.000 11.43 0.00 0.00 2.93
3218 4396 4.805192 GTGTGCATTTATTGGTATGCTTGG 59.195 41.667 8.33 0.00 45.66 3.61
3243 4421 5.568624 GCAGCTTAGGAAAATAGCCCAAAAA 60.569 40.000 0.00 0.00 35.53 1.94
3327 4506 6.204359 CACATGTTTGCAGAGATTTATAGGC 58.796 40.000 0.00 0.00 0.00 3.93
3337 4516 0.896940 AGGGGCACATGTTTGCAGAG 60.897 55.000 10.16 0.00 44.94 3.35
3372 4551 5.064707 ACGCATATAGACAACATTGTTGGTC 59.935 40.000 28.10 22.02 42.43 4.02
3376 4555 9.151471 GGATATACGCATATAGACAACATTGTT 57.849 33.333 0.00 0.00 42.43 2.83
3405 4584 8.902806 CCAAAAGAGGATAATGCAAACTATACA 58.097 33.333 0.00 0.00 0.00 2.29
3428 4607 2.228582 GCACAATGTACAGCATGACCAA 59.771 45.455 0.33 0.00 39.69 3.67
3446 4625 2.544726 GCCTCGGGCTATAATGCAC 58.455 57.895 7.58 0.00 46.69 4.57
3458 4637 2.289565 GGAAAGAATTACCAGCCTCGG 58.710 52.381 0.00 0.00 0.00 4.63
3459 4638 2.985896 TGGAAAGAATTACCAGCCTCG 58.014 47.619 0.00 0.00 0.00 4.63
3466 4645 7.801716 TGTACAGCATATGGAAAGAATTACC 57.198 36.000 4.56 0.00 0.00 2.85
3467 4646 9.669353 CAATGTACAGCATATGGAAAGAATTAC 57.331 33.333 4.56 0.00 36.67 1.89
3477 4656 5.049886 CAGTAGCACAATGTACAGCATATGG 60.050 44.000 4.56 0.00 36.67 2.74
3509 4688 4.132336 ACTGGTGCATGCTATTGTATCAG 58.868 43.478 20.33 15.05 43.57 2.90
3591 4770 9.529325 GATAGTACATGCTACAACAGTTGATTA 57.471 33.333 20.56 1.98 0.00 1.75
3595 4774 7.035612 TGAGATAGTACATGCTACAACAGTTG 58.964 38.462 12.03 12.03 0.00 3.16
3646 4825 9.434420 CCCAAGCTCAAAAATATATTGTTTGAA 57.566 29.630 22.18 13.82 39.92 2.69
3669 4848 7.986553 ATATTCCACCAATCAAAATAACCCA 57.013 32.000 0.00 0.00 0.00 4.51
3705 4884 7.351223 GTTGATATGCACTCAGAGCTTAATTC 58.649 38.462 0.00 0.00 0.00 2.17
3718 4897 7.255590 GCCATAGTAAAATGGTTGATATGCACT 60.256 37.037 4.89 0.00 46.93 4.40
3752 4931 3.059188 CAGTGGTAACGGCACTGTTAAAG 60.059 47.826 0.00 0.00 40.81 1.85
3764 4943 7.837202 TGTAAATTAGGATTCAGTGGTAACG 57.163 36.000 0.00 0.00 42.51 3.18
3842 5021 7.614124 AATAAACATTTGAATGGCACCAATC 57.386 32.000 8.44 0.00 40.70 2.67
3843 5022 7.999450 AAATAAACATTTGAATGGCACCAAT 57.001 28.000 8.44 0.00 40.70 3.16
3844 5023 7.814264 AAAATAAACATTTGAATGGCACCAA 57.186 28.000 8.44 0.00 40.70 3.67
3846 5025 6.581919 GCAAAAATAAACATTTGAATGGCACC 59.418 34.615 8.44 0.00 40.70 5.01
3848 5027 7.268199 TGCAAAAATAAACATTTGAATGGCA 57.732 28.000 8.44 0.00 40.70 4.92
3869 5068 3.300388 AGCTATAGAACTACCTGCTGCA 58.700 45.455 3.21 0.88 0.00 4.41
3932 5131 6.238049 CCTGAAAATCAATAGTCAGAAGAGCG 60.238 42.308 1.16 0.00 39.94 5.03
4034 5233 1.000171 GGTACCGGAGTCGTCAAGTTT 60.000 52.381 9.46 0.00 33.95 2.66
4055 5254 4.792804 GGAGTGCCCTGCTCTGCC 62.793 72.222 0.00 0.00 35.16 4.85
4168 5367 3.260884 TGGCGAAGAATAGACCTTGAAGT 59.739 43.478 0.00 0.00 0.00 3.01
4217 5416 1.376609 GCGCTGGATCGATGGGTTTT 61.377 55.000 0.54 0.00 0.00 2.43
4909 6385 6.819397 AACATAAGCTTCTGGTACCTTTTC 57.181 37.500 14.36 0.00 0.00 2.29
4969 6447 2.892852 CCTCCAGGTGCTCAAATCAAAA 59.107 45.455 0.00 0.00 0.00 2.44
4970 6448 2.517959 CCTCCAGGTGCTCAAATCAAA 58.482 47.619 0.00 0.00 0.00 2.69
4971 6449 2.205022 CCTCCAGGTGCTCAAATCAA 57.795 50.000 0.00 0.00 0.00 2.57
5024 6502 3.016736 GGCAAACTGCTGCTCCTAATTA 58.983 45.455 0.00 0.00 44.28 1.40
5025 6503 1.821136 GGCAAACTGCTGCTCCTAATT 59.179 47.619 0.00 0.00 44.28 1.40
5026 6504 1.005215 AGGCAAACTGCTGCTCCTAAT 59.995 47.619 0.00 0.00 44.28 1.73
5027 6505 0.401738 AGGCAAACTGCTGCTCCTAA 59.598 50.000 0.00 0.00 44.28 2.69
5252 6780 4.699637 ACGGTGTGAACATGTTCTCTTAA 58.300 39.130 32.57 14.54 40.14 1.85
5253 6781 4.330944 ACGGTGTGAACATGTTCTCTTA 57.669 40.909 32.57 14.89 40.14 2.10
5258 6786 3.181505 TGTGAAACGGTGTGAACATGTTC 60.182 43.478 28.10 28.10 42.39 3.18
5259 6787 2.750166 TGTGAAACGGTGTGAACATGTT 59.250 40.909 11.78 11.78 42.39 2.71
5261 6789 3.250762 AGATGTGAAACGGTGTGAACATG 59.749 43.478 1.89 0.00 42.39 3.21
5262 6790 3.250762 CAGATGTGAAACGGTGTGAACAT 59.749 43.478 0.00 0.00 42.39 2.71
5263 6791 2.611751 CAGATGTGAAACGGTGTGAACA 59.388 45.455 0.00 0.00 42.39 3.18
5264 6792 2.869801 TCAGATGTGAAACGGTGTGAAC 59.130 45.455 0.00 0.00 42.39 3.18
5266 6794 2.159028 TGTCAGATGTGAAACGGTGTGA 60.159 45.455 0.00 0.00 42.39 3.58
5267 6795 2.209273 TGTCAGATGTGAAACGGTGTG 58.791 47.619 0.00 0.00 42.39 3.82
5268 6796 2.613026 TGTCAGATGTGAAACGGTGT 57.387 45.000 0.00 0.00 42.39 4.16
5272 6800 9.825972 AGTAATAAAAATGTCAGATGTGAAACG 57.174 29.630 0.00 0.00 42.39 3.60
5313 6841 6.588719 TGCAACAATGTATTCTTAAGCCTT 57.411 33.333 0.00 0.00 0.00 4.35
5329 6857 2.548920 CGGGCCCTAAATTTTGCAACAA 60.549 45.455 22.43 0.00 0.00 2.83
5334 6862 1.734377 CGAACGGGCCCTAAATTTTGC 60.734 52.381 22.43 0.00 0.00 3.68
5341 6869 2.924101 ACACCGAACGGGCCCTAA 60.924 61.111 22.43 0.00 40.62 2.69
5342 6870 3.384532 GACACCGAACGGGCCCTA 61.385 66.667 22.43 0.00 40.62 3.53
5346 6874 4.754667 GAGGGACACCGAACGGGC 62.755 72.222 17.44 6.37 43.47 6.13
5347 6875 4.078516 GGAGGGACACCGAACGGG 62.079 72.222 17.44 8.83 43.47 5.28
5354 6882 2.047179 GTTGAGCGGAGGGACACC 60.047 66.667 0.00 0.00 35.10 4.16
5355 6883 2.432628 CGTTGAGCGGAGGGACAC 60.433 66.667 0.00 0.00 36.85 3.67
5379 6907 3.522731 CTCCGTCCGCTCCAGGAG 61.523 72.222 12.81 12.81 41.68 3.69
5382 6910 4.504916 CAGCTCCGTCCGCTCCAG 62.505 72.222 0.00 0.00 35.07 3.86
5387 6915 3.642778 TAACTGCAGCTCCGTCCGC 62.643 63.158 15.27 0.00 0.00 5.54
5388 6916 0.669318 TTTAACTGCAGCTCCGTCCG 60.669 55.000 15.27 0.00 0.00 4.79
5389 6917 1.519408 TTTTAACTGCAGCTCCGTCC 58.481 50.000 15.27 0.00 0.00 4.79
5390 6918 3.437049 AGAATTTTAACTGCAGCTCCGTC 59.563 43.478 15.27 3.00 0.00 4.79
5391 6919 3.412386 AGAATTTTAACTGCAGCTCCGT 58.588 40.909 15.27 0.00 0.00 4.69
5392 6920 4.161333 CAAGAATTTTAACTGCAGCTCCG 58.839 43.478 15.27 0.00 0.00 4.63
5393 6921 4.218417 TCCAAGAATTTTAACTGCAGCTCC 59.782 41.667 15.27 0.00 0.00 4.70
5394 6922 5.376854 TCCAAGAATTTTAACTGCAGCTC 57.623 39.130 15.27 0.00 0.00 4.09
5395 6923 4.321527 GCTCCAAGAATTTTAACTGCAGCT 60.322 41.667 15.27 3.62 0.00 4.24
5396 6924 3.922850 GCTCCAAGAATTTTAACTGCAGC 59.077 43.478 15.27 0.00 0.00 5.25
5397 6925 4.083324 TCGCTCCAAGAATTTTAACTGCAG 60.083 41.667 13.48 13.48 0.00 4.41
5398 6926 3.818210 TCGCTCCAAGAATTTTAACTGCA 59.182 39.130 0.00 0.00 0.00 4.41
5399 6927 4.406943 CTCGCTCCAAGAATTTTAACTGC 58.593 43.478 0.00 0.00 0.00 4.40
5400 6928 4.083324 TGCTCGCTCCAAGAATTTTAACTG 60.083 41.667 0.00 0.00 0.00 3.16
5401 6929 4.072131 TGCTCGCTCCAAGAATTTTAACT 58.928 39.130 0.00 0.00 0.00 2.24
5402 6930 4.419522 TGCTCGCTCCAAGAATTTTAAC 57.580 40.909 0.00 0.00 0.00 2.01
5403 6931 5.219633 GTTTGCTCGCTCCAAGAATTTTAA 58.780 37.500 0.00 0.00 0.00 1.52
5404 6932 4.277174 TGTTTGCTCGCTCCAAGAATTTTA 59.723 37.500 0.00 0.00 0.00 1.52
5405 6933 3.068024 TGTTTGCTCGCTCCAAGAATTTT 59.932 39.130 0.00 0.00 0.00 1.82
5406 6934 2.622942 TGTTTGCTCGCTCCAAGAATTT 59.377 40.909 0.00 0.00 0.00 1.82
5407 6935 2.227388 CTGTTTGCTCGCTCCAAGAATT 59.773 45.455 0.00 0.00 0.00 2.17
5408 6936 1.808945 CTGTTTGCTCGCTCCAAGAAT 59.191 47.619 0.00 0.00 0.00 2.40
5409 6937 1.229428 CTGTTTGCTCGCTCCAAGAA 58.771 50.000 0.00 0.00 0.00 2.52
5410 6938 0.603707 CCTGTTTGCTCGCTCCAAGA 60.604 55.000 0.00 0.00 0.00 3.02
5411 6939 0.886490 ACCTGTTTGCTCGCTCCAAG 60.886 55.000 0.00 0.00 0.00 3.61
5412 6940 1.148273 ACCTGTTTGCTCGCTCCAA 59.852 52.632 0.00 0.00 0.00 3.53
5413 6941 1.597854 CACCTGTTTGCTCGCTCCA 60.598 57.895 0.00 0.00 0.00 3.86
5414 6942 2.970974 GCACCTGTTTGCTCGCTCC 61.971 63.158 0.00 0.00 39.59 4.70
5415 6943 2.558313 GCACCTGTTTGCTCGCTC 59.442 61.111 0.00 0.00 39.59 5.03
5431 6959 9.778426 TCCTTAAAATTCTAGGATCTGCGGAGC 62.778 44.444 0.98 0.98 43.38 4.70
5432 6960 5.698545 CCTTAAAATTCTAGGATCTGCGGAG 59.301 44.000 0.00 0.00 0.00 4.63
5433 6961 5.365605 TCCTTAAAATTCTAGGATCTGCGGA 59.634 40.000 0.00 0.00 33.23 5.54
5434 6962 5.611374 TCCTTAAAATTCTAGGATCTGCGG 58.389 41.667 0.00 0.00 33.23 5.69
5435 6963 5.178438 GCTCCTTAAAATTCTAGGATCTGCG 59.822 44.000 0.00 0.00 37.44 5.18
5436 6964 6.204495 CAGCTCCTTAAAATTCTAGGATCTGC 59.796 42.308 15.48 10.66 42.19 4.26
5437 6965 6.709846 CCAGCTCCTTAAAATTCTAGGATCTG 59.290 42.308 18.31 18.31 45.37 2.90
5438 6966 6.388394 ACCAGCTCCTTAAAATTCTAGGATCT 59.612 38.462 0.00 0.00 37.44 2.75
5439 6967 6.484977 CACCAGCTCCTTAAAATTCTAGGATC 59.515 42.308 0.00 0.00 37.44 3.36
5440 6968 6.360618 CACCAGCTCCTTAAAATTCTAGGAT 58.639 40.000 0.00 0.00 37.44 3.24
5441 6969 5.339200 CCACCAGCTCCTTAAAATTCTAGGA 60.339 44.000 0.00 0.00 36.65 2.94
5442 6970 4.884164 CCACCAGCTCCTTAAAATTCTAGG 59.116 45.833 0.00 0.00 0.00 3.02
5443 6971 5.745227 TCCACCAGCTCCTTAAAATTCTAG 58.255 41.667 0.00 0.00 0.00 2.43
5444 6972 5.772393 TCCACCAGCTCCTTAAAATTCTA 57.228 39.130 0.00 0.00 0.00 2.10
5445 6973 4.657814 TCCACCAGCTCCTTAAAATTCT 57.342 40.909 0.00 0.00 0.00 2.40
5446 6974 5.654497 CAATCCACCAGCTCCTTAAAATTC 58.346 41.667 0.00 0.00 0.00 2.17
5447 6975 4.081476 GCAATCCACCAGCTCCTTAAAATT 60.081 41.667 0.00 0.00 0.00 1.82
5448 6976 3.448660 GCAATCCACCAGCTCCTTAAAAT 59.551 43.478 0.00 0.00 0.00 1.82
5449 6977 2.825532 GCAATCCACCAGCTCCTTAAAA 59.174 45.455 0.00 0.00 0.00 1.52
5450 6978 2.446435 GCAATCCACCAGCTCCTTAAA 58.554 47.619 0.00 0.00 0.00 1.52
5451 6979 1.340991 GGCAATCCACCAGCTCCTTAA 60.341 52.381 0.00 0.00 0.00 1.85
5452 6980 0.255890 GGCAATCCACCAGCTCCTTA 59.744 55.000 0.00 0.00 0.00 2.69
5453 6981 1.000396 GGCAATCCACCAGCTCCTT 60.000 57.895 0.00 0.00 0.00 3.36
5454 6982 2.679716 GGCAATCCACCAGCTCCT 59.320 61.111 0.00 0.00 0.00 3.69
5455 6983 2.819984 TTCGGCAATCCACCAGCTCC 62.820 60.000 0.00 0.00 0.00 4.70
5456 6984 1.377202 TTCGGCAATCCACCAGCTC 60.377 57.895 0.00 0.00 0.00 4.09
5457 6985 1.675641 GTTCGGCAATCCACCAGCT 60.676 57.895 0.00 0.00 0.00 4.24
5458 6986 1.523154 TTGTTCGGCAATCCACCAGC 61.523 55.000 0.00 0.00 31.07 4.85
5459 6987 0.523072 CTTGTTCGGCAATCCACCAG 59.477 55.000 0.00 0.00 36.36 4.00
5460 6988 0.179004 ACTTGTTCGGCAATCCACCA 60.179 50.000 0.00 0.00 36.36 4.17
5461 6989 0.521735 GACTTGTTCGGCAATCCACC 59.478 55.000 0.00 0.00 36.36 4.61
5462 6990 0.521735 GGACTTGTTCGGCAATCCAC 59.478 55.000 12.34 0.00 36.36 4.02
5463 6991 0.400213 AGGACTTGTTCGGCAATCCA 59.600 50.000 16.03 0.00 36.36 3.41
5464 6992 1.534729 AAGGACTTGTTCGGCAATCC 58.465 50.000 0.00 10.71 36.36 3.01
5465 6993 3.335579 AGTAAGGACTTGTTCGGCAATC 58.664 45.455 0.00 0.00 36.36 2.67
5466 6994 3.244422 TGAGTAAGGACTTGTTCGGCAAT 60.244 43.478 0.00 0.00 35.45 3.56
5467 6995 2.103432 TGAGTAAGGACTTGTTCGGCAA 59.897 45.455 0.00 0.00 35.45 4.52
5468 6996 1.689813 TGAGTAAGGACTTGTTCGGCA 59.310 47.619 0.00 0.00 35.45 5.69
5469 6997 2.288886 ACTGAGTAAGGACTTGTTCGGC 60.289 50.000 0.00 0.00 35.45 5.54
5470 6998 3.662247 ACTGAGTAAGGACTTGTTCGG 57.338 47.619 0.00 0.82 35.45 4.30
5471 6999 5.117355 TGTACTGAGTAAGGACTTGTTCG 57.883 43.478 0.00 0.00 40.87 3.95
5472 7000 9.654663 AATTATGTACTGAGTAAGGACTTGTTC 57.345 33.333 0.00 0.00 40.87 3.18
5473 7001 9.654663 GAATTATGTACTGAGTAAGGACTTGTT 57.345 33.333 0.00 0.00 40.87 2.83
5474 7002 9.036980 AGAATTATGTACTGAGTAAGGACTTGT 57.963 33.333 0.00 0.00 40.87 3.16
5475 7003 9.877178 AAGAATTATGTACTGAGTAAGGACTTG 57.123 33.333 0.00 0.00 40.87 3.16
5477 7005 8.697292 GGAAGAATTATGTACTGAGTAAGGACT 58.303 37.037 0.00 0.00 40.87 3.85
5478 7006 8.475639 TGGAAGAATTATGTACTGAGTAAGGAC 58.524 37.037 0.00 0.00 40.62 3.85
5479 7007 8.603898 TGGAAGAATTATGTACTGAGTAAGGA 57.396 34.615 0.00 0.00 0.00 3.36
5480 7008 9.319143 CTTGGAAGAATTATGTACTGAGTAAGG 57.681 37.037 0.00 0.00 0.00 2.69
5481 7009 9.877178 ACTTGGAAGAATTATGTACTGAGTAAG 57.123 33.333 0.00 0.00 0.00 2.34
5771 7408 9.121658 AGAGTGATGTAAGTTGAGTATATCGAA 57.878 33.333 0.00 0.00 0.00 3.71
5819 7459 3.369576 GCCTCCATCGGTTTTCTTAGACT 60.370 47.826 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.