Multiple sequence alignment - TraesCS2A01G328900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G328900 chr2A 100.000 2909 0 0 1 2909 561007591 561010499 0.000000e+00 5373.0
1 TraesCS2A01G328900 chr2A 89.530 468 42 6 2393 2855 513840108 513839643 1.160000e-163 586.0
2 TraesCS2A01G328900 chr2A 89.507 467 40 8 2393 2855 459832570 459833031 1.500000e-162 582.0
3 TraesCS2A01G328900 chr3A 97.337 1990 41 8 922 2909 52208269 52206290 0.000000e+00 3371.0
4 TraesCS2A01G328900 chr3A 92.531 241 15 3 223 463 41081768 41081531 2.780000e-90 342.0
5 TraesCS2A01G328900 chr3A 94.531 128 7 0 924 1051 514262573 514262446 6.360000e-47 198.0
6 TraesCS2A01G328900 chr6A 99.162 1552 13 0 924 2475 573138867 573137316 0.000000e+00 2795.0
7 TraesCS2A01G328900 chr6A 97.394 1036 26 1 1452 2486 615024985 615026020 0.000000e+00 1762.0
8 TraesCS2A01G328900 chr6A 96.172 418 16 0 1003 1420 615024570 615024987 0.000000e+00 684.0
9 TraesCS2A01G328900 chr6A 86.313 358 26 7 504 861 559334420 559334086 4.580000e-98 368.0
10 TraesCS2A01G328900 chr6A 97.297 37 1 0 461 497 559334380 559334344 2.420000e-06 63.9
11 TraesCS2A01G328900 chr5B 95.892 1339 46 1 1046 2384 528591065 528589736 0.000000e+00 2159.0
12 TraesCS2A01G328900 chr5B 86.313 358 26 7 504 861 408434423 408434089 4.580000e-98 368.0
13 TraesCS2A01G328900 chr5B 92.593 243 13 5 222 463 385665693 385665931 7.720000e-91 344.0
14 TraesCS2A01G328900 chr5B 97.297 37 1 0 461 497 408434383 408434347 2.420000e-06 63.9
15 TraesCS2A01G328900 chr5D 95.678 1342 49 2 1046 2384 435279051 435277716 0.000000e+00 2148.0
16 TraesCS2A01G328900 chr5D 92.053 151 9 3 903 1051 526269762 526269911 2.940000e-50 209.0
17 TraesCS2A01G328900 chr5A 95.383 1343 43 4 1046 2384 549220056 549218729 0.000000e+00 2119.0
18 TraesCS2A01G328900 chr5A 85.475 358 29 7 504 861 582888824 582888490 4.610000e-93 351.0
19 TraesCS2A01G328900 chr5A 97.297 37 1 0 461 497 582888784 582888748 2.420000e-06 63.9
20 TraesCS2A01G328900 chr7D 93.037 517 22 2 2393 2909 428707682 428707180 0.000000e+00 743.0
21 TraesCS2A01G328900 chr7D 89.722 467 38 7 2393 2855 63876778 63877238 3.230000e-164 588.0
22 TraesCS2A01G328900 chr7D 96.183 131 5 0 921 1051 428708964 428708834 6.310000e-52 215.0
23 TraesCS2A01G328900 chr7A 90.751 519 36 7 2393 2909 662979578 662980086 0.000000e+00 682.0
24 TraesCS2A01G328900 chr7A 90.364 467 35 5 2393 2855 726764948 726764488 3.210000e-169 604.0
25 TraesCS2A01G328900 chr7A 89.286 476 35 10 2393 2855 693847058 693847530 1.500000e-162 582.0
26 TraesCS2A01G328900 chr7A 86.313 358 26 7 504 861 115802265 115801931 4.580000e-98 368.0
27 TraesCS2A01G328900 chr7A 97.297 37 1 0 461 497 115802225 115802189 2.420000e-06 63.9
28 TraesCS2A01G328900 chr1A 89.574 470 40 6 2393 2855 480839938 480840405 3.230000e-164 588.0
29 TraesCS2A01G328900 chr6B 86.313 358 26 7 504 861 143657629 143657295 4.580000e-98 368.0
30 TraesCS2A01G328900 chr6B 92.946 241 13 4 222 461 318842929 318842692 5.970000e-92 348.0
31 TraesCS2A01G328900 chr6B 92.623 244 13 5 222 463 19441823 19441583 2.150000e-91 346.0
32 TraesCS2A01G328900 chr6B 92.562 242 13 5 222 461 318954395 318954157 2.780000e-90 342.0
33 TraesCS2A01G328900 chr6B 97.297 37 1 0 461 497 143657589 143657553 2.420000e-06 63.9
34 TraesCS2A01G328900 chr4B 93.004 243 13 4 222 463 286229437 286229676 4.610000e-93 351.0
35 TraesCS2A01G328900 chr3B 85.475 358 29 7 504 861 748783884 748783550 4.610000e-93 351.0
36 TraesCS2A01G328900 chr3B 96.183 131 5 0 921 1051 82308825 82308955 6.310000e-52 215.0
37 TraesCS2A01G328900 chr3B 97.297 37 1 0 461 497 748783844 748783808 2.420000e-06 63.9
38 TraesCS2A01G328900 chr1D 92.369 249 15 1 624 868 468845706 468845954 4.610000e-93 351.0
39 TraesCS2A01G328900 chr1D 96.454 141 4 1 503 643 468845265 468845404 6.270000e-57 231.0
40 TraesCS2A01G328900 chr1D 100.000 34 0 0 461 494 468845306 468845339 2.420000e-06 63.9
41 TraesCS2A01G328900 chr7B 93.305 239 13 3 225 463 222698176 222697941 1.660000e-92 350.0
42 TraesCS2A01G328900 chr1B 92.593 243 14 4 222 463 225807807 225808046 2.150000e-91 346.0
43 TraesCS2A01G328900 chr1B 92.593 135 10 0 917 1051 536776337 536776471 8.230000e-46 195.0
44 TraesCS2A01G328900 chrUn 92.181 243 15 4 222 463 310228169 310228408 9.980000e-90 340.0
45 TraesCS2A01G328900 chrUn 92.568 148 11 0 504 651 204416340 204416487 2.270000e-51 213.0
46 TraesCS2A01G328900 chrUn 96.124 129 5 0 923 1051 439380671 439380543 8.170000e-51 211.0
47 TraesCS2A01G328900 chrUn 97.297 37 1 0 461 497 204416380 204416416 2.420000e-06 63.9
48 TraesCS2A01G328900 chr3D 94.656 131 7 0 921 1051 424471913 424472043 1.370000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G328900 chr2A 561007591 561010499 2908 False 5373.0 5373 100.000000 1 2909 1 chr2A.!!$F2 2908
1 TraesCS2A01G328900 chr3A 52206290 52208269 1979 True 3371.0 3371 97.337000 922 2909 1 chr3A.!!$R2 1987
2 TraesCS2A01G328900 chr6A 573137316 573138867 1551 True 2795.0 2795 99.162000 924 2475 1 chr6A.!!$R1 1551
3 TraesCS2A01G328900 chr6A 615024570 615026020 1450 False 1223.0 1762 96.783000 1003 2486 2 chr6A.!!$F1 1483
4 TraesCS2A01G328900 chr5B 528589736 528591065 1329 True 2159.0 2159 95.892000 1046 2384 1 chr5B.!!$R1 1338
5 TraesCS2A01G328900 chr5D 435277716 435279051 1335 True 2148.0 2148 95.678000 1046 2384 1 chr5D.!!$R1 1338
6 TraesCS2A01G328900 chr5A 549218729 549220056 1327 True 2119.0 2119 95.383000 1046 2384 1 chr5A.!!$R1 1338
7 TraesCS2A01G328900 chr7D 428707180 428708964 1784 True 479.0 743 94.610000 921 2909 2 chr7D.!!$R1 1988
8 TraesCS2A01G328900 chr7A 662979578 662980086 508 False 682.0 682 90.751000 2393 2909 1 chr7A.!!$F1 516
9 TraesCS2A01G328900 chr1D 468845265 468845954 689 False 215.3 351 96.274333 461 868 3 chr1D.!!$F1 407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.033208 GGCCCCATCTCCACATTTCA 60.033 55.0 0.0 0.0 0.0 2.69 F
973 974 0.175531 GCAAAACTGCCACACCACTT 59.824 50.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 1922 1.001487 CAATGCTCTTTCGTGCACCAA 60.001 47.619 12.15 0.81 41.8 3.67 R
2874 3590 1.490416 TAGCGGGTTAAAGTGGGCCA 61.490 55.000 0.00 0.00 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.940166 AAAATTTGATCATTTCTGCTTTTTGTC 57.060 25.926 0.00 0.00 0.00 3.18
45 46 8.665643 AATTTGATCATTTCTGCTTTTTGTCA 57.334 26.923 0.00 0.00 0.00 3.58
46 47 8.842358 ATTTGATCATTTCTGCTTTTTGTCAT 57.158 26.923 0.00 0.00 0.00 3.06
47 48 7.646446 TTGATCATTTCTGCTTTTTGTCATG 57.354 32.000 0.00 0.00 0.00 3.07
48 49 6.751157 TGATCATTTCTGCTTTTTGTCATGT 58.249 32.000 0.00 0.00 0.00 3.21
49 50 7.211573 TGATCATTTCTGCTTTTTGTCATGTT 58.788 30.769 0.00 0.00 0.00 2.71
50 51 6.831727 TCATTTCTGCTTTTTGTCATGTTG 57.168 33.333 0.00 0.00 0.00 3.33
51 52 5.754406 TCATTTCTGCTTTTTGTCATGTTGG 59.246 36.000 0.00 0.00 0.00 3.77
52 53 4.998671 TTCTGCTTTTTGTCATGTTGGA 57.001 36.364 0.00 0.00 0.00 3.53
53 54 4.998671 TCTGCTTTTTGTCATGTTGGAA 57.001 36.364 0.00 0.00 0.00 3.53
54 55 5.336150 TCTGCTTTTTGTCATGTTGGAAA 57.664 34.783 0.00 0.00 0.00 3.13
55 56 5.350633 TCTGCTTTTTGTCATGTTGGAAAG 58.649 37.500 0.00 1.84 0.00 2.62
56 57 3.870419 TGCTTTTTGTCATGTTGGAAAGC 59.130 39.130 21.24 21.24 45.44 3.51
57 58 3.248363 GCTTTTTGTCATGTTGGAAAGCC 59.752 43.478 19.18 8.90 41.68 4.35
58 59 4.440880 CTTTTTGTCATGTTGGAAAGCCA 58.559 39.130 0.00 0.00 44.17 4.75
59 60 3.731652 TTTGTCATGTTGGAAAGCCAG 57.268 42.857 0.00 0.00 46.91 4.85
60 61 2.363306 TGTCATGTTGGAAAGCCAGT 57.637 45.000 0.00 0.00 46.91 4.00
61 62 1.955778 TGTCATGTTGGAAAGCCAGTG 59.044 47.619 0.00 0.00 46.91 3.66
62 63 2.229792 GTCATGTTGGAAAGCCAGTGA 58.770 47.619 0.00 0.00 46.91 3.41
63 64 2.821969 GTCATGTTGGAAAGCCAGTGAT 59.178 45.455 0.00 0.00 46.91 3.06
64 65 4.009675 GTCATGTTGGAAAGCCAGTGATA 58.990 43.478 0.00 0.00 46.91 2.15
65 66 4.095483 GTCATGTTGGAAAGCCAGTGATAG 59.905 45.833 0.00 0.00 46.91 2.08
66 67 4.019411 TCATGTTGGAAAGCCAGTGATAGA 60.019 41.667 0.00 0.00 46.91 1.98
67 68 4.365514 TGTTGGAAAGCCAGTGATAGAA 57.634 40.909 0.00 0.00 46.91 2.10
68 69 4.326826 TGTTGGAAAGCCAGTGATAGAAG 58.673 43.478 0.00 0.00 46.91 2.85
69 70 4.202461 TGTTGGAAAGCCAGTGATAGAAGT 60.202 41.667 0.00 0.00 46.91 3.01
70 71 3.942829 TGGAAAGCCAGTGATAGAAGTG 58.057 45.455 0.00 0.00 39.92 3.16
71 72 3.582647 TGGAAAGCCAGTGATAGAAGTGA 59.417 43.478 0.00 0.00 39.92 3.41
72 73 4.225942 TGGAAAGCCAGTGATAGAAGTGAT 59.774 41.667 0.00 0.00 39.92 3.06
73 74 4.574013 GGAAAGCCAGTGATAGAAGTGATG 59.426 45.833 0.00 0.00 0.00 3.07
74 75 3.191078 AGCCAGTGATAGAAGTGATGC 57.809 47.619 0.00 0.00 0.00 3.91
75 76 2.158842 AGCCAGTGATAGAAGTGATGCC 60.159 50.000 0.00 0.00 0.00 4.40
76 77 2.420547 GCCAGTGATAGAAGTGATGCCA 60.421 50.000 0.00 0.00 0.00 4.92
77 78 3.877559 CCAGTGATAGAAGTGATGCCAA 58.122 45.455 0.00 0.00 0.00 4.52
78 79 3.624861 CCAGTGATAGAAGTGATGCCAAC 59.375 47.826 0.00 0.00 0.00 3.77
79 80 3.624861 CAGTGATAGAAGTGATGCCAACC 59.375 47.826 0.00 0.00 0.00 3.77
80 81 2.609459 GTGATAGAAGTGATGCCAACCG 59.391 50.000 0.00 0.00 0.00 4.44
81 82 2.236146 TGATAGAAGTGATGCCAACCGT 59.764 45.455 0.00 0.00 0.00 4.83
82 83 2.093306 TAGAAGTGATGCCAACCGTG 57.907 50.000 0.00 0.00 0.00 4.94
83 84 0.396435 AGAAGTGATGCCAACCGTGA 59.604 50.000 0.00 0.00 0.00 4.35
84 85 0.517316 GAAGTGATGCCAACCGTGAC 59.483 55.000 0.00 0.00 0.00 3.67
85 86 0.889186 AAGTGATGCCAACCGTGACC 60.889 55.000 0.00 0.00 0.00 4.02
86 87 1.302511 GTGATGCCAACCGTGACCT 60.303 57.895 0.00 0.00 0.00 3.85
87 88 0.889186 GTGATGCCAACCGTGACCTT 60.889 55.000 0.00 0.00 0.00 3.50
88 89 0.179004 TGATGCCAACCGTGACCTTT 60.179 50.000 0.00 0.00 0.00 3.11
89 90 0.240945 GATGCCAACCGTGACCTTTG 59.759 55.000 0.00 0.00 0.00 2.77
90 91 0.467290 ATGCCAACCGTGACCTTTGT 60.467 50.000 0.00 0.00 0.00 2.83
91 92 1.358759 GCCAACCGTGACCTTTGTG 59.641 57.895 0.00 0.00 0.00 3.33
92 93 2.029743 CCAACCGTGACCTTTGTGG 58.970 57.895 0.00 0.00 42.93 4.17
93 94 1.452145 CCAACCGTGACCTTTGTGGG 61.452 60.000 0.00 0.00 41.11 4.61
94 95 0.464735 CAACCGTGACCTTTGTGGGA 60.465 55.000 0.00 0.00 41.11 4.37
95 96 0.256464 AACCGTGACCTTTGTGGGAA 59.744 50.000 0.00 0.00 41.11 3.97
96 97 0.256464 ACCGTGACCTTTGTGGGAAA 59.744 50.000 0.00 0.00 41.11 3.13
97 98 0.666374 CCGTGACCTTTGTGGGAAAC 59.334 55.000 0.00 0.00 41.11 2.78
98 99 1.384525 CGTGACCTTTGTGGGAAACA 58.615 50.000 0.00 0.00 41.11 2.83
106 107 4.892002 GTGGGAAACACGAGGGTT 57.108 55.556 0.00 0.00 40.85 4.11
107 108 2.327228 GTGGGAAACACGAGGGTTG 58.673 57.895 0.00 0.00 40.85 3.77
108 109 1.527380 TGGGAAACACGAGGGTTGC 60.527 57.895 0.00 0.00 0.00 4.17
109 110 2.265904 GGGAAACACGAGGGTTGCC 61.266 63.158 6.69 6.69 44.54 4.52
110 111 2.613506 GGAAACACGAGGGTTGCCG 61.614 63.158 0.00 0.00 36.75 5.69
111 112 3.249973 GAAACACGAGGGTTGCCGC 62.250 63.158 0.00 0.00 0.00 6.53
112 113 4.555709 AACACGAGGGTTGCCGCA 62.556 61.111 0.00 0.00 0.00 5.69
113 114 3.842925 AACACGAGGGTTGCCGCAT 62.843 57.895 0.00 0.00 0.00 4.73
114 115 3.055719 CACGAGGGTTGCCGCATT 61.056 61.111 0.00 0.00 0.00 3.56
115 116 2.746277 ACGAGGGTTGCCGCATTC 60.746 61.111 0.00 0.00 0.00 2.67
116 117 2.436646 CGAGGGTTGCCGCATTCT 60.437 61.111 0.00 0.00 0.00 2.40
117 118 2.040544 CGAGGGTTGCCGCATTCTT 61.041 57.895 0.00 0.00 0.00 2.52
118 119 1.803289 GAGGGTTGCCGCATTCTTC 59.197 57.895 0.00 0.00 0.00 2.87
119 120 0.678048 GAGGGTTGCCGCATTCTTCT 60.678 55.000 0.00 0.00 0.00 2.85
120 121 0.678048 AGGGTTGCCGCATTCTTCTC 60.678 55.000 0.00 0.00 0.00 2.87
121 122 0.960364 GGGTTGCCGCATTCTTCTCA 60.960 55.000 0.00 0.00 0.00 3.27
122 123 1.098050 GGTTGCCGCATTCTTCTCAT 58.902 50.000 0.00 0.00 0.00 2.90
123 124 2.288666 GGTTGCCGCATTCTTCTCATA 58.711 47.619 0.00 0.00 0.00 2.15
124 125 2.032178 GGTTGCCGCATTCTTCTCATAC 59.968 50.000 0.00 0.00 0.00 2.39
125 126 2.677836 GTTGCCGCATTCTTCTCATACA 59.322 45.455 0.00 0.00 0.00 2.29
126 127 2.554142 TGCCGCATTCTTCTCATACAG 58.446 47.619 0.00 0.00 0.00 2.74
127 128 2.168313 TGCCGCATTCTTCTCATACAGA 59.832 45.455 0.00 0.00 0.00 3.41
128 129 2.799412 GCCGCATTCTTCTCATACAGAG 59.201 50.000 0.00 0.00 46.14 3.35
129 130 3.388308 CCGCATTCTTCTCATACAGAGG 58.612 50.000 0.00 0.00 44.81 3.69
130 131 2.799412 CGCATTCTTCTCATACAGAGGC 59.201 50.000 0.00 0.00 44.81 4.70
131 132 3.137533 GCATTCTTCTCATACAGAGGCC 58.862 50.000 0.00 0.00 44.81 5.19
132 133 3.737850 CATTCTTCTCATACAGAGGCCC 58.262 50.000 0.00 0.00 44.81 5.80
133 134 1.794714 TCTTCTCATACAGAGGCCCC 58.205 55.000 0.00 0.00 44.81 5.80
134 135 1.008327 TCTTCTCATACAGAGGCCCCA 59.992 52.381 0.00 0.00 44.81 4.96
135 136 2.053244 CTTCTCATACAGAGGCCCCAT 58.947 52.381 0.00 0.00 44.81 4.00
136 137 1.722034 TCTCATACAGAGGCCCCATC 58.278 55.000 0.00 0.00 44.81 3.51
137 138 1.221523 TCTCATACAGAGGCCCCATCT 59.778 52.381 0.00 0.00 44.81 2.90
138 139 1.622811 CTCATACAGAGGCCCCATCTC 59.377 57.143 0.00 0.00 40.84 2.75
139 140 0.689623 CATACAGAGGCCCCATCTCC 59.310 60.000 0.00 0.00 31.96 3.71
140 141 0.268869 ATACAGAGGCCCCATCTCCA 59.731 55.000 0.00 0.00 31.96 3.86
141 142 0.691078 TACAGAGGCCCCATCTCCAC 60.691 60.000 0.00 0.00 31.96 4.02
142 143 1.997311 CAGAGGCCCCATCTCCACA 60.997 63.158 0.00 0.00 31.96 4.17
143 144 1.005289 AGAGGCCCCATCTCCACAT 59.995 57.895 0.00 0.00 31.96 3.21
144 145 0.625683 AGAGGCCCCATCTCCACATT 60.626 55.000 0.00 0.00 31.96 2.71
145 146 0.259938 GAGGCCCCATCTCCACATTT 59.740 55.000 0.00 0.00 0.00 2.32
146 147 0.259938 AGGCCCCATCTCCACATTTC 59.740 55.000 0.00 0.00 0.00 2.17
147 148 0.033208 GGCCCCATCTCCACATTTCA 60.033 55.000 0.00 0.00 0.00 2.69
148 149 1.412074 GGCCCCATCTCCACATTTCAT 60.412 52.381 0.00 0.00 0.00 2.57
149 150 2.391678 GCCCCATCTCCACATTTCATT 58.608 47.619 0.00 0.00 0.00 2.57
150 151 2.767960 GCCCCATCTCCACATTTCATTT 59.232 45.455 0.00 0.00 0.00 2.32
151 152 3.960102 GCCCCATCTCCACATTTCATTTA 59.040 43.478 0.00 0.00 0.00 1.40
152 153 4.590222 GCCCCATCTCCACATTTCATTTAT 59.410 41.667 0.00 0.00 0.00 1.40
153 154 5.070847 GCCCCATCTCCACATTTCATTTATT 59.929 40.000 0.00 0.00 0.00 1.40
154 155 6.267471 GCCCCATCTCCACATTTCATTTATTA 59.733 38.462 0.00 0.00 0.00 0.98
155 156 7.661040 CCCCATCTCCACATTTCATTTATTAC 58.339 38.462 0.00 0.00 0.00 1.89
156 157 7.506938 CCCCATCTCCACATTTCATTTATTACT 59.493 37.037 0.00 0.00 0.00 2.24
157 158 9.573166 CCCATCTCCACATTTCATTTATTACTA 57.427 33.333 0.00 0.00 0.00 1.82
161 162 9.613428 TCTCCACATTTCATTTATTACTACAGG 57.387 33.333 0.00 0.00 0.00 4.00
162 163 9.396022 CTCCACATTTCATTTATTACTACAGGT 57.604 33.333 0.00 0.00 0.00 4.00
203 204 8.964420 ACGATGTGAAAAATAAATAAGTGTGG 57.036 30.769 0.00 0.00 0.00 4.17
204 205 8.573035 ACGATGTGAAAAATAAATAAGTGTGGT 58.427 29.630 0.00 0.00 0.00 4.16
214 215 8.446599 AATAAATAAGTGTGGTAGTATGCACC 57.553 34.615 0.00 0.00 36.54 5.01
215 216 2.781681 AAGTGTGGTAGTATGCACCC 57.218 50.000 0.00 0.00 34.99 4.61
216 217 1.952621 AGTGTGGTAGTATGCACCCT 58.047 50.000 0.00 0.00 34.99 4.34
217 218 3.110293 AGTGTGGTAGTATGCACCCTA 57.890 47.619 0.00 0.00 34.99 3.53
218 219 2.764572 AGTGTGGTAGTATGCACCCTAC 59.235 50.000 13.66 13.66 34.99 3.18
219 220 2.764572 GTGTGGTAGTATGCACCCTACT 59.235 50.000 18.84 12.40 35.10 2.57
220 221 3.197116 GTGTGGTAGTATGCACCCTACTT 59.803 47.826 18.84 0.00 35.10 2.24
221 222 3.841845 TGTGGTAGTATGCACCCTACTTT 59.158 43.478 18.84 0.00 35.10 2.66
222 223 5.024785 TGTGGTAGTATGCACCCTACTTTA 58.975 41.667 18.84 7.94 35.10 1.85
223 224 5.664006 TGTGGTAGTATGCACCCTACTTTAT 59.336 40.000 18.84 0.00 35.10 1.40
224 225 6.157297 TGTGGTAGTATGCACCCTACTTTATT 59.843 38.462 18.84 0.00 35.10 1.40
225 226 7.345132 TGTGGTAGTATGCACCCTACTTTATTA 59.655 37.037 18.84 0.00 35.10 0.98
226 227 8.373220 GTGGTAGTATGCACCCTACTTTATTAT 58.627 37.037 18.84 0.00 35.10 1.28
227 228 8.940982 TGGTAGTATGCACCCTACTTTATTATT 58.059 33.333 18.84 0.00 35.10 1.40
228 229 9.788889 GGTAGTATGCACCCTACTTTATTATTT 57.211 33.333 18.84 0.00 35.10 1.40
258 259 6.977244 ATATAGGGGAAAATGCATCCTACT 57.023 37.500 12.07 9.53 37.14 2.57
259 260 9.744125 ATATATAGGGGAAAATGCATCCTACTA 57.256 33.333 12.07 11.04 37.14 1.82
260 261 4.439253 AGGGGAAAATGCATCCTACTAC 57.561 45.455 0.00 0.00 37.14 2.73
261 262 3.138468 AGGGGAAAATGCATCCTACTACC 59.862 47.826 0.00 0.00 37.14 3.18
262 263 3.139077 GGGAAAATGCATCCTACTACCG 58.861 50.000 0.00 0.00 37.14 4.02
263 264 3.139077 GGAAAATGCATCCTACTACCGG 58.861 50.000 0.00 0.00 33.98 5.28
264 265 2.930826 AAATGCATCCTACTACCGGG 57.069 50.000 6.32 0.00 0.00 5.73
265 266 1.802553 AATGCATCCTACTACCGGGT 58.197 50.000 6.32 4.46 0.00 5.28
266 267 1.048601 ATGCATCCTACTACCGGGTG 58.951 55.000 10.66 0.00 35.71 4.61
267 268 0.324923 TGCATCCTACTACCGGGTGT 60.325 55.000 10.66 6.62 35.06 4.16
268 269 1.063792 TGCATCCTACTACCGGGTGTA 60.064 52.381 10.66 7.54 35.06 2.90
278 279 1.992538 ACCGGGTGTAGCTACTATCC 58.007 55.000 23.84 20.57 0.00 2.59
279 280 1.216175 ACCGGGTGTAGCTACTATCCA 59.784 52.381 23.84 0.95 0.00 3.41
280 281 2.158355 ACCGGGTGTAGCTACTATCCAT 60.158 50.000 23.84 10.73 0.00 3.41
281 282 2.897969 CCGGGTGTAGCTACTATCCATT 59.102 50.000 23.84 0.00 0.00 3.16
282 283 3.323979 CCGGGTGTAGCTACTATCCATTT 59.676 47.826 23.84 0.00 0.00 2.32
283 284 4.557205 CGGGTGTAGCTACTATCCATTTC 58.443 47.826 23.84 10.05 0.00 2.17
284 285 4.281182 CGGGTGTAGCTACTATCCATTTCT 59.719 45.833 23.84 0.00 0.00 2.52
285 286 5.565045 CGGGTGTAGCTACTATCCATTTCTC 60.565 48.000 23.84 9.20 0.00 2.87
286 287 5.304614 GGGTGTAGCTACTATCCATTTCTCA 59.695 44.000 23.84 0.00 0.00 3.27
287 288 6.014156 GGGTGTAGCTACTATCCATTTCTCAT 60.014 42.308 23.84 0.00 0.00 2.90
288 289 7.178628 GGGTGTAGCTACTATCCATTTCTCATA 59.821 40.741 23.84 0.00 0.00 2.15
289 290 8.754080 GGTGTAGCTACTATCCATTTCTCATAT 58.246 37.037 23.84 0.00 0.00 1.78
302 303 9.104713 TCCATTTCTCATATACTATCATGTGGT 57.895 33.333 0.00 0.00 0.00 4.16
316 317 9.504708 ACTATCATGTGGTAGTATGTACTCTAC 57.495 37.037 4.18 11.90 37.73 2.59
317 318 9.727859 CTATCATGTGGTAGTATGTACTCTACT 57.272 37.037 16.53 14.31 37.73 2.57
318 319 8.998277 ATCATGTGGTAGTATGTACTCTACTT 57.002 34.615 12.08 1.15 37.73 2.24
319 320 8.818622 TCATGTGGTAGTATGTACTCTACTTT 57.181 34.615 12.08 0.00 37.73 2.66
320 321 9.910267 TCATGTGGTAGTATGTACTCTACTTTA 57.090 33.333 12.08 5.77 37.73 1.85
402 403 8.441312 AAAAATTGCAAGTGAGTTCATGATTT 57.559 26.923 4.94 0.00 0.00 2.17
403 404 8.441312 AAAATTGCAAGTGAGTTCATGATTTT 57.559 26.923 4.94 0.00 0.00 1.82
404 405 8.441312 AAATTGCAAGTGAGTTCATGATTTTT 57.559 26.923 4.94 0.00 0.00 1.94
405 406 9.545105 AAATTGCAAGTGAGTTCATGATTTTTA 57.455 25.926 4.94 0.00 0.00 1.52
406 407 9.715121 AATTGCAAGTGAGTTCATGATTTTTAT 57.285 25.926 4.94 0.00 0.00 1.40
407 408 9.715121 ATTGCAAGTGAGTTCATGATTTTTATT 57.285 25.926 4.94 0.00 0.00 1.40
408 409 8.523523 TGCAAGTGAGTTCATGATTTTTATTG 57.476 30.769 0.00 0.27 0.00 1.90
409 410 8.143193 TGCAAGTGAGTTCATGATTTTTATTGT 58.857 29.630 0.00 0.00 0.00 2.71
410 411 9.624697 GCAAGTGAGTTCATGATTTTTATTGTA 57.375 29.630 0.00 0.00 0.00 2.41
439 440 9.639636 TGTGAAATACATACATATTTTTACGCG 57.360 29.630 3.53 3.53 35.38 6.01
440 441 9.852481 GTGAAATACATACATATTTTTACGCGA 57.148 29.630 15.93 0.00 35.38 5.87
455 456 7.815398 TTTTACGCGAAATAGAGTATTCACA 57.185 32.000 15.93 0.00 0.00 3.58
456 457 7.815398 TTTACGCGAAATAGAGTATTCACAA 57.185 32.000 15.93 0.00 0.00 3.33
457 458 7.815398 TTACGCGAAATAGAGTATTCACAAA 57.185 32.000 15.93 0.00 0.00 2.83
458 459 6.715344 ACGCGAAATAGAGTATTCACAAAA 57.285 33.333 15.93 0.00 0.00 2.44
459 460 7.303634 ACGCGAAATAGAGTATTCACAAAAT 57.696 32.000 15.93 0.00 0.00 1.82
460 461 8.415192 ACGCGAAATAGAGTATTCACAAAATA 57.585 30.769 15.93 0.00 0.00 1.40
461 462 9.042008 ACGCGAAATAGAGTATTCACAAAATAT 57.958 29.630 15.93 0.00 0.00 1.28
462 463 9.306280 CGCGAAATAGAGTATTCACAAAATATG 57.694 33.333 0.00 0.00 0.00 1.78
505 506 3.671411 ACGAGAGTCCGCGCAGTT 61.671 61.111 8.75 0.00 44.19 3.16
506 507 3.175240 CGAGAGTCCGCGCAGTTG 61.175 66.667 8.75 0.00 0.00 3.16
557 558 9.961266 CAATTTTTGCACATGTAGTAATGAATG 57.039 29.630 0.00 0.00 0.00 2.67
620 621 9.225773 TGAAAGGATATTCATTAACGGGGACCA 62.226 40.741 0.00 0.00 40.95 4.02
639 640 7.962441 GGGACCAATGCAAATATAATAAACCT 58.038 34.615 0.00 0.00 0.00 3.50
640 641 7.872483 GGGACCAATGCAAATATAATAAACCTG 59.128 37.037 0.00 0.00 0.00 4.00
641 642 8.421002 GGACCAATGCAAATATAATAAACCTGT 58.579 33.333 0.00 0.00 0.00 4.00
642 643 9.816354 GACCAATGCAAATATAATAAACCTGTT 57.184 29.630 0.00 0.00 0.00 3.16
657 658 4.920640 ACCTGTTACTAGATGGATCACG 57.079 45.455 0.00 0.00 0.00 4.35
658 659 4.279145 ACCTGTTACTAGATGGATCACGT 58.721 43.478 0.00 0.00 0.00 4.49
659 660 5.443283 ACCTGTTACTAGATGGATCACGTA 58.557 41.667 0.00 0.00 0.00 3.57
660 661 6.069331 ACCTGTTACTAGATGGATCACGTAT 58.931 40.000 0.00 0.00 0.00 3.06
661 662 6.016192 ACCTGTTACTAGATGGATCACGTATG 60.016 42.308 0.00 0.00 0.00 2.39
662 663 5.769367 TGTTACTAGATGGATCACGTATGC 58.231 41.667 0.00 0.00 0.00 3.14
663 664 5.535030 TGTTACTAGATGGATCACGTATGCT 59.465 40.000 0.00 0.00 0.00 3.79
664 665 6.040504 TGTTACTAGATGGATCACGTATGCTT 59.959 38.462 0.00 0.00 0.00 3.91
665 666 7.229907 TGTTACTAGATGGATCACGTATGCTTA 59.770 37.037 0.00 0.00 0.00 3.09
666 667 6.015027 ACTAGATGGATCACGTATGCTTAC 57.985 41.667 0.00 0.00 0.00 2.34
667 668 5.770663 ACTAGATGGATCACGTATGCTTACT 59.229 40.000 0.00 0.00 0.00 2.24
668 669 6.940867 ACTAGATGGATCACGTATGCTTACTA 59.059 38.462 0.00 0.00 0.00 1.82
669 670 6.260870 AGATGGATCACGTATGCTTACTAG 57.739 41.667 8.02 0.00 0.00 2.57
670 671 5.770663 AGATGGATCACGTATGCTTACTAGT 59.229 40.000 0.00 0.00 0.00 2.57
671 672 5.847111 TGGATCACGTATGCTTACTAGTT 57.153 39.130 0.00 0.00 0.00 2.24
672 673 5.828747 TGGATCACGTATGCTTACTAGTTC 58.171 41.667 0.00 5.09 0.00 3.01
673 674 5.221130 GGATCACGTATGCTTACTAGTTCC 58.779 45.833 0.00 9.30 0.00 3.62
674 675 5.009811 GGATCACGTATGCTTACTAGTTCCT 59.990 44.000 0.00 0.00 0.00 3.36
675 676 6.206243 GGATCACGTATGCTTACTAGTTCCTA 59.794 42.308 0.00 0.00 0.00 2.94
676 677 6.615264 TCACGTATGCTTACTAGTTCCTAG 57.385 41.667 0.00 0.00 39.72 3.02
678 679 6.037940 TCACGTATGCTTACTAGTTCCTAGTG 59.962 42.308 12.94 2.74 45.52 2.74
679 680 5.884792 ACGTATGCTTACTAGTTCCTAGTGT 59.115 40.000 12.94 0.00 45.52 3.55
680 681 6.376581 ACGTATGCTTACTAGTTCCTAGTGTT 59.623 38.462 12.94 0.00 45.52 3.32
681 682 6.691818 CGTATGCTTACTAGTTCCTAGTGTTG 59.308 42.308 12.94 5.41 45.52 3.33
682 683 6.852420 ATGCTTACTAGTTCCTAGTGTTGA 57.148 37.500 12.94 0.00 45.52 3.18
683 684 6.022163 TGCTTACTAGTTCCTAGTGTTGAC 57.978 41.667 12.94 1.28 45.52 3.18
684 685 5.773680 TGCTTACTAGTTCCTAGTGTTGACT 59.226 40.000 12.94 0.00 45.52 3.41
685 686 6.944290 TGCTTACTAGTTCCTAGTGTTGACTA 59.056 38.462 12.94 0.00 45.52 2.59
686 687 7.614583 TGCTTACTAGTTCCTAGTGTTGACTAT 59.385 37.037 12.94 0.00 45.52 2.12
687 688 9.118300 GCTTACTAGTTCCTAGTGTTGACTATA 57.882 37.037 12.94 0.00 45.52 1.31
691 692 9.176460 ACTAGTTCCTAGTGTTGACTATAACTC 57.824 37.037 3.21 0.00 44.47 3.01
692 693 9.175312 CTAGTTCCTAGTGTTGACTATAACTCA 57.825 37.037 10.84 0.00 39.36 3.41
693 694 7.828712 AGTTCCTAGTGTTGACTATAACTCAC 58.171 38.462 0.00 0.00 36.75 3.51
694 695 7.450634 AGTTCCTAGTGTTGACTATAACTCACA 59.549 37.037 0.00 0.00 36.75 3.58
695 696 7.154435 TCCTAGTGTTGACTATAACTCACAC 57.846 40.000 0.00 0.00 34.05 3.82
696 697 6.717997 TCCTAGTGTTGACTATAACTCACACA 59.282 38.462 0.00 0.00 34.05 3.72
697 698 6.807230 CCTAGTGTTGACTATAACTCACACAC 59.193 42.308 0.00 10.10 34.05 3.82
698 699 6.406692 AGTGTTGACTATAACTCACACACT 57.593 37.500 14.41 14.41 36.39 3.55
699 700 6.817184 AGTGTTGACTATAACTCACACACTT 58.183 36.000 14.41 6.77 37.05 3.16
700 701 7.272978 AGTGTTGACTATAACTCACACACTTT 58.727 34.615 14.41 4.13 37.05 2.66
701 702 7.769044 AGTGTTGACTATAACTCACACACTTTT 59.231 33.333 14.41 3.74 37.05 2.27
702 703 9.037737 GTGTTGACTATAACTCACACACTTTTA 57.962 33.333 0.00 0.00 32.63 1.52
703 704 9.602568 TGTTGACTATAACTCACACACTTTTAA 57.397 29.630 0.00 0.00 0.00 1.52
733 734 6.707440 ACCATGTGTTCACTTCATTTTACA 57.293 33.333 4.59 0.00 0.00 2.41
734 735 7.106439 ACCATGTGTTCACTTCATTTTACAA 57.894 32.000 4.59 0.00 0.00 2.41
735 736 7.725251 ACCATGTGTTCACTTCATTTTACAAT 58.275 30.769 4.59 0.00 0.00 2.71
736 737 8.203485 ACCATGTGTTCACTTCATTTTACAATT 58.797 29.630 4.59 0.00 0.00 2.32
737 738 8.489559 CCATGTGTTCACTTCATTTTACAATTG 58.510 33.333 3.24 3.24 0.00 2.32
738 739 9.033481 CATGTGTTCACTTCATTTTACAATTGT 57.967 29.630 16.68 16.68 0.00 2.71
740 741 9.509855 TGTGTTCACTTCATTTTACAATTGTAC 57.490 29.630 17.85 5.19 0.00 2.90
741 742 9.509855 GTGTTCACTTCATTTTACAATTGTACA 57.490 29.630 17.85 9.11 0.00 2.90
751 752 9.959749 CATTTTACAATTGTACAAACTAGGTGT 57.040 29.630 17.85 11.71 0.00 4.16
752 753 9.959749 ATTTTACAATTGTACAAACTAGGTGTG 57.040 29.630 17.85 3.88 0.00 3.82
753 754 8.508883 TTTACAATTGTACAAACTAGGTGTGT 57.491 30.769 17.85 8.95 37.74 3.72
754 755 8.508883 TTACAATTGTACAAACTAGGTGTGTT 57.491 30.769 17.85 0.00 35.43 3.32
755 756 6.791303 ACAATTGTACAAACTAGGTGTGTTG 58.209 36.000 13.23 10.51 35.43 3.33
756 757 4.886247 TTGTACAAACTAGGTGTGTTGC 57.114 40.909 5.64 2.60 35.43 4.17
757 758 3.875125 TGTACAAACTAGGTGTGTTGCA 58.125 40.909 10.68 0.00 35.43 4.08
758 759 3.623960 TGTACAAACTAGGTGTGTTGCAC 59.376 43.478 10.68 2.80 46.97 4.57
768 769 4.542075 TGTTGCACAACAGCCGTA 57.458 50.000 12.02 0.00 45.42 4.02
769 770 2.781911 TGTTGCACAACAGCCGTAA 58.218 47.368 12.02 0.00 45.42 3.18
770 771 1.313772 TGTTGCACAACAGCCGTAAT 58.686 45.000 12.02 0.00 45.42 1.89
771 772 2.495084 TGTTGCACAACAGCCGTAATA 58.505 42.857 12.02 0.00 45.42 0.98
772 773 2.482336 TGTTGCACAACAGCCGTAATAG 59.518 45.455 12.02 0.00 45.42 1.73
773 774 2.739913 GTTGCACAACAGCCGTAATAGA 59.260 45.455 8.61 0.00 40.84 1.98
774 775 3.260475 TGCACAACAGCCGTAATAGAT 57.740 42.857 0.00 0.00 0.00 1.98
775 776 3.605634 TGCACAACAGCCGTAATAGATT 58.394 40.909 0.00 0.00 0.00 2.40
776 777 4.006989 TGCACAACAGCCGTAATAGATTT 58.993 39.130 0.00 0.00 0.00 2.17
777 778 5.179533 TGCACAACAGCCGTAATAGATTTA 58.820 37.500 0.00 0.00 0.00 1.40
778 779 5.293324 TGCACAACAGCCGTAATAGATTTAG 59.707 40.000 0.00 0.00 0.00 1.85
779 780 5.293569 GCACAACAGCCGTAATAGATTTAGT 59.706 40.000 0.00 0.00 0.00 2.24
780 781 6.183360 GCACAACAGCCGTAATAGATTTAGTT 60.183 38.462 0.00 0.00 0.00 2.24
781 782 7.010738 GCACAACAGCCGTAATAGATTTAGTTA 59.989 37.037 0.00 0.00 0.00 2.24
782 783 9.042008 CACAACAGCCGTAATAGATTTAGTTAT 57.958 33.333 0.00 0.00 0.00 1.89
825 826 8.588290 ATTGTTTACCATTGCTAATTAGTGGA 57.412 30.769 21.48 7.16 34.13 4.02
826 827 7.385778 TGTTTACCATTGCTAATTAGTGGAC 57.614 36.000 21.48 12.75 34.13 4.02
827 828 6.376018 TGTTTACCATTGCTAATTAGTGGACC 59.624 38.462 21.48 10.09 34.13 4.46
828 829 4.584638 ACCATTGCTAATTAGTGGACCA 57.415 40.909 21.48 6.62 34.13 4.02
829 830 4.526970 ACCATTGCTAATTAGTGGACCAG 58.473 43.478 21.48 6.58 34.13 4.00
830 831 3.316308 CCATTGCTAATTAGTGGACCAGC 59.684 47.826 13.91 0.08 31.59 4.85
831 832 2.710096 TGCTAATTAGTGGACCAGCC 57.290 50.000 13.91 0.00 37.10 4.85
832 833 1.912731 TGCTAATTAGTGGACCAGCCA 59.087 47.619 13.91 0.00 46.96 4.75
844 845 5.913137 TGGACCAGCCATAACAAAATTAG 57.087 39.130 0.00 0.00 43.33 1.73
845 846 5.329399 TGGACCAGCCATAACAAAATTAGT 58.671 37.500 0.00 0.00 43.33 2.24
846 847 5.777732 TGGACCAGCCATAACAAAATTAGTT 59.222 36.000 0.00 2.32 43.33 2.24
847 848 6.071616 TGGACCAGCCATAACAAAATTAGTTC 60.072 38.462 0.00 0.00 43.33 3.01
848 849 6.152831 GGACCAGCCATAACAAAATTAGTTCT 59.847 38.462 0.00 0.00 36.34 3.01
849 850 7.338449 GGACCAGCCATAACAAAATTAGTTCTA 59.662 37.037 0.00 0.00 36.34 2.10
850 851 8.823220 ACCAGCCATAACAAAATTAGTTCTAT 57.177 30.769 0.00 0.00 0.00 1.98
851 852 9.255029 ACCAGCCATAACAAAATTAGTTCTATT 57.745 29.630 0.00 0.00 0.00 1.73
973 974 0.175531 GCAAAACTGCCACACCACTT 59.824 50.000 0.00 0.00 0.00 3.16
1005 1076 0.887836 ATCGGCATCGCAGCATGATT 60.888 50.000 0.00 0.00 38.34 2.57
1473 1644 1.669115 CACTGACCCCAAGCACGAG 60.669 63.158 0.00 0.00 0.00 4.18
2408 3113 4.307432 CCCTGATAAATAGCACGGTACTG 58.693 47.826 0.00 0.00 0.00 2.74
2499 3212 4.217550 CCATGATAAGTTTTTGACCCGTGT 59.782 41.667 0.00 0.00 0.00 4.49
2501 3214 4.200874 TGATAAGTTTTTGACCCGTGTGT 58.799 39.130 0.00 0.00 0.00 3.72
2502 3215 2.931512 AAGTTTTTGACCCGTGTGTG 57.068 45.000 0.00 0.00 0.00 3.82
2503 3216 1.828979 AGTTTTTGACCCGTGTGTGT 58.171 45.000 0.00 0.00 0.00 3.72
2504 3217 1.470890 AGTTTTTGACCCGTGTGTGTG 59.529 47.619 0.00 0.00 0.00 3.82
2505 3218 1.200484 GTTTTTGACCCGTGTGTGTGT 59.800 47.619 0.00 0.00 0.00 3.72
2506 3219 0.805614 TTTTGACCCGTGTGTGTGTG 59.194 50.000 0.00 0.00 0.00 3.82
2507 3220 1.027255 TTTGACCCGTGTGTGTGTGG 61.027 55.000 0.00 0.00 0.00 4.17
2509 3222 4.183858 ACCCGTGTGTGTGTGGGG 62.184 66.667 0.65 0.00 46.38 4.96
2510 3223 4.947147 CCCGTGTGTGTGTGGGGG 62.947 72.222 0.00 0.00 38.03 5.40
2668 3381 5.379732 TCCCCGATAATTTTTGTGTGAAC 57.620 39.130 0.00 0.00 0.00 3.18
2885 3601 1.896465 CCCGAAAAATGGCCCACTTTA 59.104 47.619 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.940166 GACAAAAAGCAGAAATGATCAAATTTT 57.060 25.926 0.00 0.00 29.89 1.82
19 20 9.111613 TGACAAAAAGCAGAAATGATCAAATTT 57.888 25.926 0.00 0.00 32.43 1.82
20 21 8.665643 TGACAAAAAGCAGAAATGATCAAATT 57.334 26.923 0.00 0.00 0.00 1.82
21 22 8.717821 CATGACAAAAAGCAGAAATGATCAAAT 58.282 29.630 0.00 0.00 0.00 2.32
22 23 7.711772 ACATGACAAAAAGCAGAAATGATCAAA 59.288 29.630 0.00 0.00 0.00 2.69
23 24 7.211573 ACATGACAAAAAGCAGAAATGATCAA 58.788 30.769 0.00 0.00 0.00 2.57
24 25 6.751157 ACATGACAAAAAGCAGAAATGATCA 58.249 32.000 0.00 0.00 0.00 2.92
25 26 7.359765 CCAACATGACAAAAAGCAGAAATGATC 60.360 37.037 0.00 0.00 0.00 2.92
26 27 6.425721 CCAACATGACAAAAAGCAGAAATGAT 59.574 34.615 0.00 0.00 0.00 2.45
27 28 5.754406 CCAACATGACAAAAAGCAGAAATGA 59.246 36.000 0.00 0.00 0.00 2.57
28 29 5.754406 TCCAACATGACAAAAAGCAGAAATG 59.246 36.000 0.00 0.00 0.00 2.32
29 30 5.916318 TCCAACATGACAAAAAGCAGAAAT 58.084 33.333 0.00 0.00 0.00 2.17
30 31 5.336150 TCCAACATGACAAAAAGCAGAAA 57.664 34.783 0.00 0.00 0.00 2.52
31 32 4.998671 TCCAACATGACAAAAAGCAGAA 57.001 36.364 0.00 0.00 0.00 3.02
32 33 4.998671 TTCCAACATGACAAAAAGCAGA 57.001 36.364 0.00 0.00 0.00 4.26
33 34 4.025480 GCTTTCCAACATGACAAAAAGCAG 60.025 41.667 22.89 4.01 44.83 4.24
34 35 3.870419 GCTTTCCAACATGACAAAAAGCA 59.130 39.130 22.89 0.00 44.83 3.91
35 36 3.248363 GGCTTTCCAACATGACAAAAAGC 59.752 43.478 21.22 21.22 44.77 3.51
36 37 4.440880 TGGCTTTCCAACATGACAAAAAG 58.559 39.130 0.00 5.48 39.99 2.27
37 38 4.081198 ACTGGCTTTCCAACATGACAAAAA 60.081 37.500 0.00 0.00 42.91 1.94
38 39 3.450457 ACTGGCTTTCCAACATGACAAAA 59.550 39.130 0.00 0.00 42.91 2.44
39 40 3.030291 ACTGGCTTTCCAACATGACAAA 58.970 40.909 0.00 0.00 42.91 2.83
40 41 2.361757 CACTGGCTTTCCAACATGACAA 59.638 45.455 0.00 0.00 42.91 3.18
41 42 1.955778 CACTGGCTTTCCAACATGACA 59.044 47.619 0.00 0.00 42.91 3.58
42 43 2.229792 TCACTGGCTTTCCAACATGAC 58.770 47.619 0.00 0.00 42.91 3.06
43 44 2.655090 TCACTGGCTTTCCAACATGA 57.345 45.000 0.00 0.00 42.91 3.07
44 45 4.264253 TCTATCACTGGCTTTCCAACATG 58.736 43.478 0.00 0.00 42.91 3.21
45 46 4.574674 TCTATCACTGGCTTTCCAACAT 57.425 40.909 0.00 0.00 42.91 2.71
46 47 4.202461 ACTTCTATCACTGGCTTTCCAACA 60.202 41.667 0.00 0.00 42.91 3.33
47 48 4.154918 CACTTCTATCACTGGCTTTCCAAC 59.845 45.833 0.00 0.00 42.91 3.77
48 49 4.041567 TCACTTCTATCACTGGCTTTCCAA 59.958 41.667 0.00 0.00 42.91 3.53
49 50 3.582647 TCACTTCTATCACTGGCTTTCCA 59.417 43.478 0.00 0.00 40.85 3.53
50 51 4.207891 TCACTTCTATCACTGGCTTTCC 57.792 45.455 0.00 0.00 0.00 3.13
51 52 4.034975 GCATCACTTCTATCACTGGCTTTC 59.965 45.833 0.00 0.00 0.00 2.62
52 53 3.944015 GCATCACTTCTATCACTGGCTTT 59.056 43.478 0.00 0.00 0.00 3.51
53 54 3.539604 GCATCACTTCTATCACTGGCTT 58.460 45.455 0.00 0.00 0.00 4.35
54 55 2.158842 GGCATCACTTCTATCACTGGCT 60.159 50.000 0.00 0.00 0.00 4.75
55 56 2.216898 GGCATCACTTCTATCACTGGC 58.783 52.381 0.00 0.00 0.00 4.85
56 57 3.548745 TGGCATCACTTCTATCACTGG 57.451 47.619 0.00 0.00 0.00 4.00
57 58 3.624861 GGTTGGCATCACTTCTATCACTG 59.375 47.826 0.00 0.00 0.00 3.66
58 59 3.679917 CGGTTGGCATCACTTCTATCACT 60.680 47.826 0.00 0.00 0.00 3.41
59 60 2.609459 CGGTTGGCATCACTTCTATCAC 59.391 50.000 0.00 0.00 0.00 3.06
60 61 2.236146 ACGGTTGGCATCACTTCTATCA 59.764 45.455 0.00 0.00 0.00 2.15
61 62 2.609459 CACGGTTGGCATCACTTCTATC 59.391 50.000 0.00 0.00 0.00 2.08
62 63 2.236146 TCACGGTTGGCATCACTTCTAT 59.764 45.455 0.00 0.00 0.00 1.98
63 64 1.621317 TCACGGTTGGCATCACTTCTA 59.379 47.619 0.00 0.00 0.00 2.10
64 65 0.396435 TCACGGTTGGCATCACTTCT 59.604 50.000 0.00 0.00 0.00 2.85
65 66 0.517316 GTCACGGTTGGCATCACTTC 59.483 55.000 0.00 0.00 0.00 3.01
66 67 0.889186 GGTCACGGTTGGCATCACTT 60.889 55.000 0.00 0.00 0.00 3.16
67 68 1.302511 GGTCACGGTTGGCATCACT 60.303 57.895 0.00 0.00 0.00 3.41
68 69 0.889186 AAGGTCACGGTTGGCATCAC 60.889 55.000 0.00 0.00 0.00 3.06
69 70 0.179004 AAAGGTCACGGTTGGCATCA 60.179 50.000 0.00 0.00 0.00 3.07
70 71 0.240945 CAAAGGTCACGGTTGGCATC 59.759 55.000 0.00 0.00 0.00 3.91
71 72 0.467290 ACAAAGGTCACGGTTGGCAT 60.467 50.000 0.00 0.00 0.00 4.40
72 73 1.077357 ACAAAGGTCACGGTTGGCA 60.077 52.632 0.00 0.00 0.00 4.92
73 74 1.358759 CACAAAGGTCACGGTTGGC 59.641 57.895 0.00 0.00 0.00 4.52
74 75 1.452145 CCCACAAAGGTCACGGTTGG 61.452 60.000 0.00 0.00 34.66 3.77
75 76 0.464735 TCCCACAAAGGTCACGGTTG 60.465 55.000 0.00 0.00 34.66 3.77
76 77 0.256464 TTCCCACAAAGGTCACGGTT 59.744 50.000 0.00 0.00 34.66 4.44
77 78 0.256464 TTTCCCACAAAGGTCACGGT 59.744 50.000 0.00 0.00 34.66 4.83
78 79 0.666374 GTTTCCCACAAAGGTCACGG 59.334 55.000 0.00 0.00 34.66 4.94
79 80 1.064952 GTGTTTCCCACAAAGGTCACG 59.935 52.381 0.00 0.00 43.92 4.35
80 81 1.064952 CGTGTTTCCCACAAAGGTCAC 59.935 52.381 0.00 0.00 44.78 3.67
81 82 1.065345 TCGTGTTTCCCACAAAGGTCA 60.065 47.619 0.00 0.00 44.78 4.02
82 83 1.602377 CTCGTGTTTCCCACAAAGGTC 59.398 52.381 0.00 0.00 44.78 3.85
83 84 1.675552 CTCGTGTTTCCCACAAAGGT 58.324 50.000 0.00 0.00 44.78 3.50
84 85 0.951558 CCTCGTGTTTCCCACAAAGG 59.048 55.000 0.00 0.00 44.78 3.11
85 86 0.951558 CCCTCGTGTTTCCCACAAAG 59.048 55.000 0.00 0.00 44.78 2.77
86 87 0.256464 ACCCTCGTGTTTCCCACAAA 59.744 50.000 0.00 0.00 44.78 2.83
87 88 0.256464 AACCCTCGTGTTTCCCACAA 59.744 50.000 0.00 0.00 44.78 3.33
88 89 0.464735 CAACCCTCGTGTTTCCCACA 60.465 55.000 0.00 0.00 44.78 4.17
89 90 1.792118 GCAACCCTCGTGTTTCCCAC 61.792 60.000 0.00 0.00 40.89 4.61
90 91 1.527380 GCAACCCTCGTGTTTCCCA 60.527 57.895 0.00 0.00 0.00 4.37
91 92 2.265904 GGCAACCCTCGTGTTTCCC 61.266 63.158 0.00 0.00 0.00 3.97
92 93 2.613506 CGGCAACCCTCGTGTTTCC 61.614 63.158 0.00 0.00 0.00 3.13
93 94 2.943653 CGGCAACCCTCGTGTTTC 59.056 61.111 0.00 0.00 0.00 2.78
94 95 3.284449 GCGGCAACCCTCGTGTTT 61.284 61.111 0.00 0.00 0.00 2.83
95 96 3.842925 ATGCGGCAACCCTCGTGTT 62.843 57.895 6.82 0.00 0.00 3.32
96 97 3.842925 AATGCGGCAACCCTCGTGT 62.843 57.895 6.82 0.00 0.00 4.49
97 98 3.039202 GAATGCGGCAACCCTCGTG 62.039 63.158 6.82 0.00 0.00 4.35
98 99 2.746277 GAATGCGGCAACCCTCGT 60.746 61.111 6.82 0.00 0.00 4.18
99 100 1.982073 GAAGAATGCGGCAACCCTCG 61.982 60.000 6.82 0.00 0.00 4.63
100 101 0.678048 AGAAGAATGCGGCAACCCTC 60.678 55.000 6.82 2.01 0.00 4.30
101 102 0.678048 GAGAAGAATGCGGCAACCCT 60.678 55.000 6.82 1.24 0.00 4.34
102 103 0.960364 TGAGAAGAATGCGGCAACCC 60.960 55.000 6.82 0.00 0.00 4.11
103 104 1.098050 ATGAGAAGAATGCGGCAACC 58.902 50.000 6.82 1.36 0.00 3.77
104 105 2.677836 TGTATGAGAAGAATGCGGCAAC 59.322 45.455 6.82 4.49 0.00 4.17
105 106 2.938451 CTGTATGAGAAGAATGCGGCAA 59.062 45.455 6.82 0.00 0.00 4.52
106 107 2.168313 TCTGTATGAGAAGAATGCGGCA 59.832 45.455 4.58 4.58 0.00 5.69
107 108 2.799412 CTCTGTATGAGAAGAATGCGGC 59.201 50.000 0.00 0.00 45.39 6.53
108 109 3.388308 CCTCTGTATGAGAAGAATGCGG 58.612 50.000 0.00 0.00 45.39 5.69
109 110 2.799412 GCCTCTGTATGAGAAGAATGCG 59.201 50.000 0.00 0.00 45.39 4.73
110 111 3.137533 GGCCTCTGTATGAGAAGAATGC 58.862 50.000 0.00 0.00 45.39 3.56
111 112 3.495806 GGGGCCTCTGTATGAGAAGAATG 60.496 52.174 0.84 0.00 45.39 2.67
112 113 2.708325 GGGGCCTCTGTATGAGAAGAAT 59.292 50.000 0.84 0.00 45.39 2.40
113 114 2.119495 GGGGCCTCTGTATGAGAAGAA 58.881 52.381 0.84 0.00 45.39 2.52
114 115 1.008327 TGGGGCCTCTGTATGAGAAGA 59.992 52.381 3.07 0.00 45.39 2.87
115 116 1.500474 TGGGGCCTCTGTATGAGAAG 58.500 55.000 3.07 0.00 45.39 2.85
116 117 2.050144 GATGGGGCCTCTGTATGAGAA 58.950 52.381 3.07 0.00 45.39 2.87
117 118 1.221523 AGATGGGGCCTCTGTATGAGA 59.778 52.381 3.07 0.00 45.39 3.27
118 119 1.622811 GAGATGGGGCCTCTGTATGAG 59.377 57.143 3.07 0.00 42.30 2.90
119 120 1.722034 GAGATGGGGCCTCTGTATGA 58.278 55.000 3.07 0.00 0.00 2.15
120 121 0.689623 GGAGATGGGGCCTCTGTATG 59.310 60.000 3.07 0.00 0.00 2.39
121 122 0.268869 TGGAGATGGGGCCTCTGTAT 59.731 55.000 3.07 0.00 0.00 2.29
122 123 0.691078 GTGGAGATGGGGCCTCTGTA 60.691 60.000 3.07 0.00 0.00 2.74
123 124 1.997874 GTGGAGATGGGGCCTCTGT 60.998 63.158 3.07 0.00 0.00 3.41
124 125 1.351080 ATGTGGAGATGGGGCCTCTG 61.351 60.000 3.07 0.00 0.00 3.35
125 126 0.625683 AATGTGGAGATGGGGCCTCT 60.626 55.000 3.07 0.00 0.00 3.69
126 127 0.259938 AAATGTGGAGATGGGGCCTC 59.740 55.000 0.84 0.00 0.00 4.70
127 128 0.259938 GAAATGTGGAGATGGGGCCT 59.740 55.000 0.84 0.00 0.00 5.19
128 129 0.033208 TGAAATGTGGAGATGGGGCC 60.033 55.000 0.00 0.00 0.00 5.80
129 130 2.077687 ATGAAATGTGGAGATGGGGC 57.922 50.000 0.00 0.00 0.00 5.80
130 131 6.736110 AATAAATGAAATGTGGAGATGGGG 57.264 37.500 0.00 0.00 0.00 4.96
131 132 8.469309 AGTAATAAATGAAATGTGGAGATGGG 57.531 34.615 0.00 0.00 0.00 4.00
135 136 9.613428 CCTGTAGTAATAAATGAAATGTGGAGA 57.387 33.333 0.00 0.00 0.00 3.71
136 137 9.396022 ACCTGTAGTAATAAATGAAATGTGGAG 57.604 33.333 0.00 0.00 0.00 3.86
178 179 8.573035 ACCACACTTATTTATTTTTCACATCGT 58.427 29.630 0.00 0.00 0.00 3.73
179 180 8.964420 ACCACACTTATTTATTTTTCACATCG 57.036 30.769 0.00 0.00 0.00 3.84
188 189 8.899771 GGTGCATACTACCACACTTATTTATTT 58.100 33.333 0.00 0.00 38.12 1.40
189 190 7.501225 GGGTGCATACTACCACACTTATTTATT 59.499 37.037 0.00 0.00 40.03 1.40
190 191 6.996282 GGGTGCATACTACCACACTTATTTAT 59.004 38.462 0.00 0.00 40.03 1.40
191 192 6.157297 AGGGTGCATACTACCACACTTATTTA 59.843 38.462 0.00 0.00 42.75 1.40
192 193 5.045140 AGGGTGCATACTACCACACTTATTT 60.045 40.000 0.00 0.00 42.75 1.40
193 194 4.473559 AGGGTGCATACTACCACACTTATT 59.526 41.667 0.00 0.00 42.75 1.40
194 195 4.037927 AGGGTGCATACTACCACACTTAT 58.962 43.478 0.00 0.00 42.75 1.73
195 196 3.446968 AGGGTGCATACTACCACACTTA 58.553 45.455 0.00 0.00 42.75 2.24
196 197 2.266279 AGGGTGCATACTACCACACTT 58.734 47.619 0.00 0.00 42.75 3.16
197 198 1.952621 AGGGTGCATACTACCACACT 58.047 50.000 0.00 0.00 40.69 3.55
198 199 2.764572 AGTAGGGTGCATACTACCACAC 59.235 50.000 20.54 6.36 40.25 3.82
199 200 3.110293 AGTAGGGTGCATACTACCACA 57.890 47.619 20.54 0.00 40.25 4.17
200 201 4.482952 AAAGTAGGGTGCATACTACCAC 57.517 45.455 20.54 5.79 40.25 4.16
201 202 6.818281 AATAAAGTAGGGTGCATACTACCA 57.182 37.500 20.54 11.14 40.25 3.25
202 203 9.788889 AAATAATAAAGTAGGGTGCATACTACC 57.211 33.333 20.54 4.70 40.25 3.18
232 233 9.744125 AGTAGGATGCATTTTCCCCTATATATA 57.256 33.333 12.76 0.00 33.45 0.86
233 234 8.644432 AGTAGGATGCATTTTCCCCTATATAT 57.356 34.615 12.76 0.00 33.45 0.86
234 235 8.989131 GTAGTAGGATGCATTTTCCCCTATATA 58.011 37.037 12.76 7.78 33.45 0.86
235 236 6.977244 AGTAGGATGCATTTTCCCCTATAT 57.023 37.500 12.76 4.52 33.45 0.86
236 237 6.214819 GGTAGTAGGATGCATTTTCCCCTATA 59.785 42.308 12.76 5.79 33.45 1.31
237 238 5.014228 GGTAGTAGGATGCATTTTCCCCTAT 59.986 44.000 12.76 6.52 33.45 2.57
238 239 4.349930 GGTAGTAGGATGCATTTTCCCCTA 59.650 45.833 0.00 3.63 33.45 3.53
239 240 3.138468 GGTAGTAGGATGCATTTTCCCCT 59.862 47.826 0.00 4.75 33.45 4.79
240 241 3.487372 GGTAGTAGGATGCATTTTCCCC 58.513 50.000 0.00 0.00 33.45 4.81
241 242 3.139077 CGGTAGTAGGATGCATTTTCCC 58.861 50.000 0.00 0.00 33.45 3.97
242 243 3.139077 CCGGTAGTAGGATGCATTTTCC 58.861 50.000 0.00 0.00 0.00 3.13
243 244 3.139077 CCCGGTAGTAGGATGCATTTTC 58.861 50.000 0.00 0.00 0.00 2.29
244 245 2.508300 ACCCGGTAGTAGGATGCATTTT 59.492 45.455 0.00 0.00 0.00 1.82
245 246 2.124411 ACCCGGTAGTAGGATGCATTT 58.876 47.619 0.00 0.00 0.00 2.32
246 247 1.416401 CACCCGGTAGTAGGATGCATT 59.584 52.381 0.00 0.00 0.00 3.56
247 248 1.048601 CACCCGGTAGTAGGATGCAT 58.951 55.000 0.00 0.00 0.00 3.96
248 249 0.324923 ACACCCGGTAGTAGGATGCA 60.325 55.000 0.00 0.00 0.00 3.96
249 250 1.612463 CTACACCCGGTAGTAGGATGC 59.388 57.143 18.15 0.00 43.73 3.91
258 259 2.442878 TGGATAGTAGCTACACCCGGTA 59.557 50.000 25.28 8.54 0.00 4.02
259 260 1.216175 TGGATAGTAGCTACACCCGGT 59.784 52.381 25.28 6.48 0.00 5.28
260 261 1.991121 TGGATAGTAGCTACACCCGG 58.009 55.000 25.28 0.00 0.00 5.73
261 262 4.281182 AGAAATGGATAGTAGCTACACCCG 59.719 45.833 25.28 0.00 0.00 5.28
262 263 5.304614 TGAGAAATGGATAGTAGCTACACCC 59.695 44.000 25.28 20.64 0.00 4.61
263 264 6.406692 TGAGAAATGGATAGTAGCTACACC 57.593 41.667 25.28 22.39 0.00 4.16
276 277 9.104713 ACCACATGATAGTATATGAGAAATGGA 57.895 33.333 0.00 0.00 0.00 3.41
290 291 9.504708 GTAGAGTACATACTACCACATGATAGT 57.495 37.037 0.00 6.98 36.50 2.12
291 292 9.727859 AGTAGAGTACATACTACCACATGATAG 57.272 37.037 15.89 0.69 39.53 2.08
293 294 8.998277 AAGTAGAGTACATACTACCACATGAT 57.002 34.615 15.89 0.00 39.53 2.45
294 295 8.818622 AAAGTAGAGTACATACTACCACATGA 57.181 34.615 15.89 0.00 39.53 3.07
377 378 8.441312 AAATCATGAACTCACTTGCAATTTTT 57.559 26.923 0.00 0.00 0.00 1.94
378 379 8.441312 AAAATCATGAACTCACTTGCAATTTT 57.559 26.923 0.00 0.00 0.00 1.82
379 380 8.441312 AAAAATCATGAACTCACTTGCAATTT 57.559 26.923 0.00 0.00 0.00 1.82
380 381 9.715121 ATAAAAATCATGAACTCACTTGCAATT 57.285 25.926 0.00 0.00 0.00 2.32
381 382 9.715121 AATAAAAATCATGAACTCACTTGCAAT 57.285 25.926 0.00 0.00 0.00 3.56
382 383 8.980610 CAATAAAAATCATGAACTCACTTGCAA 58.019 29.630 0.00 0.00 0.00 4.08
383 384 8.143193 ACAATAAAAATCATGAACTCACTTGCA 58.857 29.630 0.00 0.00 0.00 4.08
384 385 8.524870 ACAATAAAAATCATGAACTCACTTGC 57.475 30.769 0.00 0.00 0.00 4.01
413 414 9.639636 CGCGTAAAAATATGTATGTATTTCACA 57.360 29.630 0.00 0.00 42.69 3.58
414 415 9.852481 TCGCGTAAAAATATGTATGTATTTCAC 57.148 29.630 5.77 0.00 34.16 3.18
429 430 8.875803 TGTGAATACTCTATTTCGCGTAAAAAT 58.124 29.630 5.77 7.77 0.00 1.82
430 431 8.242085 TGTGAATACTCTATTTCGCGTAAAAA 57.758 30.769 5.77 0.00 0.00 1.94
431 432 7.815398 TGTGAATACTCTATTTCGCGTAAAA 57.185 32.000 5.77 0.00 0.00 1.52
432 433 7.815398 TTGTGAATACTCTATTTCGCGTAAA 57.185 32.000 5.77 6.08 0.00 2.01
433 434 7.815398 TTTGTGAATACTCTATTTCGCGTAA 57.185 32.000 5.77 2.31 0.00 3.18
434 435 7.815398 TTTTGTGAATACTCTATTTCGCGTA 57.185 32.000 5.77 0.00 0.00 4.42
435 436 6.715344 TTTTGTGAATACTCTATTTCGCGT 57.285 33.333 5.77 0.00 0.00 6.01
436 437 9.306280 CATATTTTGTGAATACTCTATTTCGCG 57.694 33.333 0.00 0.00 0.00 5.87
472 473 8.719648 CGGACTCTCGTTACTATATTCACTAAT 58.280 37.037 0.00 0.00 0.00 1.73
473 474 7.307632 GCGGACTCTCGTTACTATATTCACTAA 60.308 40.741 0.00 0.00 0.00 2.24
474 475 6.146837 GCGGACTCTCGTTACTATATTCACTA 59.853 42.308 0.00 0.00 0.00 2.74
475 476 5.049543 GCGGACTCTCGTTACTATATTCACT 60.050 44.000 0.00 0.00 0.00 3.41
476 477 5.145759 GCGGACTCTCGTTACTATATTCAC 58.854 45.833 0.00 0.00 0.00 3.18
477 478 4.084171 CGCGGACTCTCGTTACTATATTCA 60.084 45.833 0.00 0.00 0.00 2.57
478 479 4.393074 CGCGGACTCTCGTTACTATATTC 58.607 47.826 0.00 0.00 0.00 1.75
479 480 3.364764 GCGCGGACTCTCGTTACTATATT 60.365 47.826 8.83 0.00 0.00 1.28
480 481 2.159234 GCGCGGACTCTCGTTACTATAT 59.841 50.000 8.83 0.00 0.00 0.86
481 482 1.528586 GCGCGGACTCTCGTTACTATA 59.471 52.381 8.83 0.00 0.00 1.31
482 483 0.307146 GCGCGGACTCTCGTTACTAT 59.693 55.000 8.83 0.00 0.00 2.12
483 484 1.020861 TGCGCGGACTCTCGTTACTA 61.021 55.000 8.83 0.00 0.00 1.82
484 485 2.254703 CTGCGCGGACTCTCGTTACT 62.255 60.000 11.90 0.00 0.00 2.24
485 486 1.868251 CTGCGCGGACTCTCGTTAC 60.868 63.158 11.90 0.00 0.00 2.50
486 487 1.859427 AACTGCGCGGACTCTCGTTA 61.859 55.000 25.98 0.00 0.00 3.18
487 488 3.208884 AACTGCGCGGACTCTCGTT 62.209 57.895 25.98 1.63 0.00 3.85
488 489 3.671411 AACTGCGCGGACTCTCGT 61.671 61.111 25.98 0.00 0.00 4.18
489 490 2.874010 ATCAACTGCGCGGACTCTCG 62.874 60.000 25.98 4.15 0.00 4.04
490 491 0.737715 AATCAACTGCGCGGACTCTC 60.738 55.000 25.98 0.00 0.00 3.20
491 492 0.320771 AAATCAACTGCGCGGACTCT 60.321 50.000 25.98 0.00 0.00 3.24
492 493 0.517316 AAAATCAACTGCGCGGACTC 59.483 50.000 25.98 0.00 0.00 3.36
493 494 0.951558 AAAAATCAACTGCGCGGACT 59.048 45.000 25.98 6.49 0.00 3.85
494 495 2.239201 GTAAAAATCAACTGCGCGGAC 58.761 47.619 25.98 2.80 0.00 4.79
495 496 1.136197 CGTAAAAATCAACTGCGCGGA 60.136 47.619 25.98 3.19 0.00 5.54
496 497 1.136197 TCGTAAAAATCAACTGCGCGG 60.136 47.619 16.39 16.39 0.00 6.46
497 498 2.220315 TCGTAAAAATCAACTGCGCG 57.780 45.000 0.00 0.00 0.00 6.86
498 499 2.276282 GCATCGTAAAAATCAACTGCGC 59.724 45.455 0.00 0.00 0.00 6.09
499 500 2.845967 GGCATCGTAAAAATCAACTGCG 59.154 45.455 0.00 0.00 0.00 5.18
500 501 3.608073 GTGGCATCGTAAAAATCAACTGC 59.392 43.478 0.00 0.00 0.00 4.40
501 502 3.845775 CGTGGCATCGTAAAAATCAACTG 59.154 43.478 0.00 0.00 0.00 3.16
502 503 3.749088 TCGTGGCATCGTAAAAATCAACT 59.251 39.130 8.80 0.00 0.00 3.16
503 504 4.073169 TCGTGGCATCGTAAAAATCAAC 57.927 40.909 8.80 0.00 0.00 3.18
504 505 4.393371 TGATCGTGGCATCGTAAAAATCAA 59.607 37.500 8.80 0.00 0.00 2.57
505 506 3.935828 TGATCGTGGCATCGTAAAAATCA 59.064 39.130 8.80 7.61 0.00 2.57
506 507 4.530094 TGATCGTGGCATCGTAAAAATC 57.470 40.909 8.80 5.66 0.00 2.17
557 558 8.071368 CCTTGACTCTCGTTACTATATTCACTC 58.929 40.741 0.00 0.00 0.00 3.51
577 578 8.738645 ATCCTTTCATTACTATGTTCCTTGAC 57.261 34.615 0.00 0.00 33.34 3.18
606 607 1.468985 TGCATTGGTCCCCGTTAATG 58.531 50.000 0.00 0.00 34.51 1.90
631 632 7.926555 CGTGATCCATCTAGTAACAGGTTTATT 59.073 37.037 0.00 0.00 0.00 1.40
632 633 7.069578 ACGTGATCCATCTAGTAACAGGTTTAT 59.930 37.037 0.00 0.00 0.00 1.40
633 634 6.379133 ACGTGATCCATCTAGTAACAGGTTTA 59.621 38.462 0.00 0.00 0.00 2.01
634 635 5.187186 ACGTGATCCATCTAGTAACAGGTTT 59.813 40.000 0.00 0.00 0.00 3.27
635 636 4.710375 ACGTGATCCATCTAGTAACAGGTT 59.290 41.667 0.00 0.00 0.00 3.50
636 637 4.279145 ACGTGATCCATCTAGTAACAGGT 58.721 43.478 0.00 0.00 0.00 4.00
637 638 4.920640 ACGTGATCCATCTAGTAACAGG 57.079 45.455 0.00 0.00 0.00 4.00
638 639 5.859114 GCATACGTGATCCATCTAGTAACAG 59.141 44.000 0.00 0.00 0.00 3.16
639 640 5.535030 AGCATACGTGATCCATCTAGTAACA 59.465 40.000 0.00 0.00 0.00 2.41
640 641 6.015027 AGCATACGTGATCCATCTAGTAAC 57.985 41.667 0.00 0.00 0.00 2.50
641 642 6.650427 AAGCATACGTGATCCATCTAGTAA 57.350 37.500 0.00 0.00 0.00 2.24
642 643 6.940867 AGTAAGCATACGTGATCCATCTAGTA 59.059 38.462 0.00 0.00 37.11 1.82
643 644 5.770663 AGTAAGCATACGTGATCCATCTAGT 59.229 40.000 0.00 0.00 37.11 2.57
644 645 6.260870 AGTAAGCATACGTGATCCATCTAG 57.739 41.667 0.00 0.00 37.11 2.43
645 646 6.940867 ACTAGTAAGCATACGTGATCCATCTA 59.059 38.462 0.00 0.00 37.11 1.98
646 647 5.770663 ACTAGTAAGCATACGTGATCCATCT 59.229 40.000 0.00 0.00 37.11 2.90
647 648 6.015027 ACTAGTAAGCATACGTGATCCATC 57.985 41.667 0.00 0.00 37.11 3.51
648 649 6.406692 AACTAGTAAGCATACGTGATCCAT 57.593 37.500 0.00 0.00 37.11 3.41
649 650 5.221185 GGAACTAGTAAGCATACGTGATCCA 60.221 44.000 0.00 0.00 37.11 3.41
650 651 5.009811 AGGAACTAGTAAGCATACGTGATCC 59.990 44.000 0.00 12.23 36.02 3.36
651 652 6.074544 AGGAACTAGTAAGCATACGTGATC 57.925 41.667 0.00 0.00 36.02 2.92
667 668 8.954350 GTGAGTTATAGTCAACACTAGGAACTA 58.046 37.037 10.19 0.00 41.26 2.24
668 669 7.450634 TGTGAGTTATAGTCAACACTAGGAACT 59.549 37.037 10.07 10.07 42.54 3.01
669 670 7.541437 GTGTGAGTTATAGTCAACACTAGGAAC 59.459 40.741 0.00 0.00 38.56 3.62
670 671 7.231925 TGTGTGAGTTATAGTCAACACTAGGAA 59.768 37.037 5.47 0.00 38.56 3.36
671 672 6.717997 TGTGTGAGTTATAGTCAACACTAGGA 59.282 38.462 5.47 0.00 38.56 2.94
672 673 6.807230 GTGTGTGAGTTATAGTCAACACTAGG 59.193 42.308 15.12 0.00 38.56 3.02
673 674 7.594714 AGTGTGTGAGTTATAGTCAACACTAG 58.405 38.462 19.30 0.00 41.88 2.57
674 675 7.520451 AGTGTGTGAGTTATAGTCAACACTA 57.480 36.000 19.30 0.00 41.88 2.74
675 676 6.406692 AGTGTGTGAGTTATAGTCAACACT 57.593 37.500 17.21 17.21 40.62 3.55
676 677 7.478520 AAAGTGTGTGAGTTATAGTCAACAC 57.521 36.000 14.85 14.85 38.43 3.32
677 678 9.602568 TTAAAAGTGTGTGAGTTATAGTCAACA 57.397 29.630 0.00 0.00 0.00 3.33
707 708 8.855110 TGTAAAATGAAGTGAACACATGGTAAT 58.145 29.630 7.68 0.00 0.00 1.89
708 709 8.226819 TGTAAAATGAAGTGAACACATGGTAA 57.773 30.769 7.68 0.00 0.00 2.85
709 710 7.809546 TGTAAAATGAAGTGAACACATGGTA 57.190 32.000 7.68 0.00 0.00 3.25
710 711 6.707440 TGTAAAATGAAGTGAACACATGGT 57.293 33.333 7.68 0.00 0.00 3.55
711 712 8.489559 CAATTGTAAAATGAAGTGAACACATGG 58.510 33.333 7.68 0.00 0.00 3.66
712 713 9.033481 ACAATTGTAAAATGAAGTGAACACATG 57.967 29.630 9.97 0.00 0.00 3.21
714 715 9.509855 GTACAATTGTAAAATGAAGTGAACACA 57.490 29.630 19.63 0.00 31.52 3.72
715 716 9.509855 TGTACAATTGTAAAATGAAGTGAACAC 57.490 29.630 19.63 5.11 31.52 3.32
725 726 9.959749 ACACCTAGTTTGTACAATTGTAAAATG 57.040 29.630 19.55 15.75 28.70 2.32
726 727 9.959749 CACACCTAGTTTGTACAATTGTAAAAT 57.040 29.630 19.55 14.76 28.70 1.82
727 728 8.958506 ACACACCTAGTTTGTACAATTGTAAAA 58.041 29.630 19.63 17.63 31.52 1.52
728 729 8.508883 ACACACCTAGTTTGTACAATTGTAAA 57.491 30.769 19.63 12.23 31.52 2.01
729 730 8.399425 CAACACACCTAGTTTGTACAATTGTAA 58.601 33.333 19.63 4.76 31.52 2.41
730 731 7.467539 GCAACACACCTAGTTTGTACAATTGTA 60.468 37.037 14.35 14.35 0.00 2.41
731 732 6.679392 GCAACACACCTAGTTTGTACAATTGT 60.679 38.462 16.68 16.68 0.00 2.71
732 733 5.685511 GCAACACACCTAGTTTGTACAATTG 59.314 40.000 9.56 3.24 0.00 2.32
733 734 5.358442 TGCAACACACCTAGTTTGTACAATT 59.642 36.000 9.56 3.82 0.00 2.32
734 735 4.884744 TGCAACACACCTAGTTTGTACAAT 59.115 37.500 9.56 0.00 0.00 2.71
735 736 4.095185 GTGCAACACACCTAGTTTGTACAA 59.905 41.667 3.59 3.59 44.02 2.41
736 737 3.623960 GTGCAACACACCTAGTTTGTACA 59.376 43.478 0.00 0.00 44.02 2.90
737 738 4.205323 GTGCAACACACCTAGTTTGTAC 57.795 45.455 0.00 0.00 44.02 2.90
752 753 2.739913 TCTATTACGGCTGTTGTGCAAC 59.260 45.455 1.99 8.01 41.50 4.17
753 754 3.046968 TCTATTACGGCTGTTGTGCAA 57.953 42.857 1.99 0.00 34.04 4.08
754 755 2.753055 TCTATTACGGCTGTTGTGCA 57.247 45.000 1.99 0.00 34.04 4.57
755 756 4.616181 AAATCTATTACGGCTGTTGTGC 57.384 40.909 1.99 0.00 0.00 4.57
756 757 6.903883 ACTAAATCTATTACGGCTGTTGTG 57.096 37.500 1.99 0.00 0.00 3.33
799 800 9.688091 TCCACTAATTAGCAATGGTAAACAATA 57.312 29.630 12.54 0.89 0.00 1.90
800 801 8.466798 GTCCACTAATTAGCAATGGTAAACAAT 58.533 33.333 12.54 0.00 0.00 2.71
801 802 7.094118 GGTCCACTAATTAGCAATGGTAAACAA 60.094 37.037 12.54 0.00 0.00 2.83
802 803 6.376018 GGTCCACTAATTAGCAATGGTAAACA 59.624 38.462 12.54 0.00 0.00 2.83
803 804 6.376018 TGGTCCACTAATTAGCAATGGTAAAC 59.624 38.462 12.54 7.22 0.00 2.01
804 805 6.486056 TGGTCCACTAATTAGCAATGGTAAA 58.514 36.000 12.54 0.00 0.00 2.01
805 806 6.068461 TGGTCCACTAATTAGCAATGGTAA 57.932 37.500 12.54 7.38 0.00 2.85
806 807 5.680619 CTGGTCCACTAATTAGCAATGGTA 58.319 41.667 12.54 4.34 0.00 3.25
807 808 4.526970 CTGGTCCACTAATTAGCAATGGT 58.473 43.478 12.54 0.00 0.00 3.55
808 809 3.316308 GCTGGTCCACTAATTAGCAATGG 59.684 47.826 12.54 12.45 0.00 3.16
809 810 3.316308 GGCTGGTCCACTAATTAGCAATG 59.684 47.826 12.54 3.70 33.05 2.82
810 811 3.053693 TGGCTGGTCCACTAATTAGCAAT 60.054 43.478 12.54 0.00 40.72 3.56
811 812 2.307392 TGGCTGGTCCACTAATTAGCAA 59.693 45.455 12.54 0.00 40.72 3.91
812 813 1.912731 TGGCTGGTCCACTAATTAGCA 59.087 47.619 12.54 1.38 40.72 3.49
813 814 2.710096 TGGCTGGTCCACTAATTAGC 57.290 50.000 12.54 0.00 40.72 3.09
823 824 5.914898 ACTAATTTTGTTATGGCTGGTCC 57.085 39.130 0.00 0.00 0.00 4.46
824 825 7.158099 AGAACTAATTTTGTTATGGCTGGTC 57.842 36.000 0.00 0.00 0.00 4.02
825 826 8.823220 ATAGAACTAATTTTGTTATGGCTGGT 57.177 30.769 1.90 0.00 0.00 4.00
917 918 6.378582 GGGTGCCAAATACATATTTCGTATG 58.621 40.000 0.00 0.00 44.72 2.39
918 919 5.475564 GGGGTGCCAAATACATATTTCGTAT 59.524 40.000 0.00 0.00 33.88 3.06
919 920 4.822896 GGGGTGCCAAATACATATTTCGTA 59.177 41.667 0.00 0.00 33.88 3.43
939 940 4.738998 TGCAATCGGGCACAGGGG 62.739 66.667 0.00 0.00 39.25 4.79
973 974 3.014085 GCCGATCGAAGGGACACCA 62.014 63.158 18.66 0.00 40.13 4.17
1473 1644 1.676967 CAGGTCCTTGAGCTTGGCC 60.677 63.158 0.00 0.00 38.40 5.36
1748 1922 1.001487 CAATGCTCTTTCGTGCACCAA 60.001 47.619 12.15 0.81 41.80 3.67
2225 2484 4.281941 TGCTGAAGAACATCACTAGTCAGT 59.718 41.667 0.00 0.00 34.77 3.41
2668 3381 5.107104 ACGCGGTGCTTATATTATCATGTTG 60.107 40.000 12.47 0.00 0.00 3.33
2744 3457 7.227116 AGGCGAGTGTATGTTTTTAACAACTTA 59.773 33.333 6.10 1.76 45.86 2.24
2874 3590 1.490416 TAGCGGGTTAAAGTGGGCCA 61.490 55.000 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.