Multiple sequence alignment - TraesCS2A01G328800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G328800 | chr2A | 100.000 | 2969 | 0 | 0 | 1 | 2969 | 560784822 | 560781854 | 0.000000e+00 | 5483.0 |
1 | TraesCS2A01G328800 | chr2A | 100.000 | 82 | 0 | 0 | 2888 | 2969 | 560776831 | 560776750 | 5.130000e-33 | 152.0 |
2 | TraesCS2A01G328800 | chr2B | 91.264 | 1820 | 71 | 29 | 325 | 2081 | 504468022 | 504469816 | 0.000000e+00 | 2399.0 |
3 | TraesCS2A01G328800 | chr2B | 89.844 | 256 | 24 | 2 | 325 | 580 | 504444376 | 504444629 | 7.930000e-86 | 327.0 |
4 | TraesCS2A01G328800 | chr2B | 91.213 | 239 | 14 | 5 | 2652 | 2887 | 504470713 | 504470947 | 4.780000e-83 | 318.0 |
5 | TraesCS2A01G328800 | chr2B | 92.308 | 195 | 10 | 3 | 2080 | 2269 | 504469886 | 504470080 | 3.770000e-69 | 272.0 |
6 | TraesCS2A01G328800 | chr2B | 90.659 | 182 | 16 | 1 | 2267 | 2448 | 504470255 | 504470435 | 1.060000e-59 | 241.0 |
7 | TraesCS2A01G328800 | chr2B | 93.750 | 112 | 4 | 2 | 2456 | 2564 | 504470598 | 504470709 | 6.580000e-37 | 165.0 |
8 | TraesCS2A01G328800 | chr2B | 96.875 | 96 | 3 | 0 | 2566 | 2661 | 653585435 | 653585340 | 8.520000e-36 | 161.0 |
9 | TraesCS2A01G328800 | chr2B | 86.614 | 127 | 8 | 6 | 203 | 320 | 504467553 | 504467679 | 6.680000e-27 | 132.0 |
10 | TraesCS2A01G328800 | chr2B | 92.683 | 82 | 6 | 0 | 2886 | 2967 | 401283979 | 401284060 | 5.200000e-23 | 119.0 |
11 | TraesCS2A01G328800 | chr2B | 92.500 | 80 | 6 | 0 | 2888 | 2967 | 401286683 | 401286762 | 6.720000e-22 | 115.0 |
12 | TraesCS2A01G328800 | chr2B | 86.111 | 108 | 6 | 6 | 222 | 320 | 504443926 | 504444033 | 1.130000e-19 | 108.0 |
13 | TraesCS2A01G328800 | chr2D | 91.266 | 1809 | 59 | 30 | 322 | 2081 | 427570339 | 427572097 | 0.000000e+00 | 2374.0 |
14 | TraesCS2A01G328800 | chr2D | 84.363 | 518 | 29 | 25 | 2080 | 2565 | 427572157 | 427572654 | 7.500000e-126 | 460.0 |
15 | TraesCS2A01G328800 | chr2D | 90.295 | 237 | 16 | 5 | 2652 | 2887 | 427572657 | 427572887 | 1.340000e-78 | 303.0 |
16 | TraesCS2A01G328800 | chr2D | 85.128 | 195 | 15 | 9 | 1 | 183 | 405280790 | 405280598 | 1.410000e-43 | 187.0 |
17 | TraesCS2A01G328800 | chr2D | 91.304 | 115 | 7 | 3 | 2567 | 2680 | 107899778 | 107899890 | 1.430000e-33 | 154.0 |
18 | TraesCS2A01G328800 | chr3B | 89.205 | 176 | 10 | 5 | 1 | 167 | 758844930 | 758845105 | 8.340000e-51 | 211.0 |
19 | TraesCS2A01G328800 | chr7B | 87.568 | 185 | 11 | 4 | 1 | 173 | 608187238 | 608187054 | 1.400000e-48 | 204.0 |
20 | TraesCS2A01G328800 | chr1B | 87.500 | 184 | 14 | 5 | 1 | 175 | 470727647 | 470727830 | 1.400000e-48 | 204.0 |
21 | TraesCS2A01G328800 | chr1B | 85.632 | 174 | 16 | 5 | 1 | 166 | 6668718 | 6668890 | 1.090000e-39 | 174.0 |
22 | TraesCS2A01G328800 | chr1B | 96.875 | 96 | 2 | 1 | 2564 | 2659 | 618002459 | 618002553 | 3.060000e-35 | 159.0 |
23 | TraesCS2A01G328800 | chr1A | 87.166 | 187 | 12 | 6 | 1 | 175 | 522187512 | 522187698 | 5.020000e-48 | 202.0 |
24 | TraesCS2A01G328800 | chr1A | 91.096 | 146 | 11 | 2 | 2 | 145 | 93368545 | 93368400 | 2.330000e-46 | 196.0 |
25 | TraesCS2A01G328800 | chr7A | 87.931 | 174 | 13 | 4 | 1 | 166 | 10222569 | 10222742 | 6.490000e-47 | 198.0 |
26 | TraesCS2A01G328800 | chr7A | 96.875 | 96 | 3 | 0 | 2567 | 2662 | 608875110 | 608875205 | 8.520000e-36 | 161.0 |
27 | TraesCS2A01G328800 | chr6D | 88.050 | 159 | 11 | 4 | 1 | 151 | 420707214 | 420707056 | 6.540000e-42 | 182.0 |
28 | TraesCS2A01G328800 | chr6D | 91.892 | 111 | 8 | 1 | 2544 | 2654 | 434509242 | 434509351 | 1.430000e-33 | 154.0 |
29 | TraesCS2A01G328800 | chr4D | 95.146 | 103 | 4 | 1 | 2561 | 2662 | 5081569 | 5081671 | 8.520000e-36 | 161.0 |
30 | TraesCS2A01G328800 | chr3D | 97.849 | 93 | 2 | 0 | 2565 | 2657 | 535746945 | 535746853 | 8.520000e-36 | 161.0 |
31 | TraesCS2A01G328800 | chr1D | 91.892 | 111 | 7 | 2 | 2551 | 2661 | 440409661 | 440409769 | 1.430000e-33 | 154.0 |
32 | TraesCS2A01G328800 | chr6B | 92.381 | 105 | 7 | 1 | 2544 | 2648 | 657939632 | 657939735 | 6.630000e-32 | 148.0 |
33 | TraesCS2A01G328800 | chr6B | 92.500 | 80 | 6 | 0 | 2888 | 2967 | 464713821 | 464713900 | 6.720000e-22 | 115.0 |
34 | TraesCS2A01G328800 | chr6B | 92.500 | 80 | 6 | 0 | 2888 | 2967 | 464718915 | 464718994 | 6.720000e-22 | 115.0 |
35 | TraesCS2A01G328800 | chrUn | 100.000 | 29 | 0 | 0 | 1809 | 1837 | 356020608 | 356020636 | 1.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G328800 | chr2A | 560781854 | 560784822 | 2968 | True | 5483.000000 | 5483 | 100.000000 | 1 | 2969 | 1 | chr2A.!!$R2 | 2968 |
1 | TraesCS2A01G328800 | chr2B | 504467553 | 504470947 | 3394 | False | 587.833333 | 2399 | 90.968000 | 203 | 2887 | 6 | chr2B.!!$F3 | 2684 |
2 | TraesCS2A01G328800 | chr2B | 504443926 | 504444629 | 703 | False | 217.500000 | 327 | 87.977500 | 222 | 580 | 2 | chr2B.!!$F2 | 358 |
3 | TraesCS2A01G328800 | chr2D | 427570339 | 427572887 | 2548 | False | 1045.666667 | 2374 | 88.641333 | 322 | 2887 | 3 | chr2D.!!$F2 | 2565 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
23 | 24 | 0.036875 | AGCAGGACACAAACCCTAGC | 59.963 | 55.0 | 0.00 | 0.0 | 0.0 | 3.42 | F |
24 | 25 | 0.250727 | GCAGGACACAAACCCTAGCA | 60.251 | 55.0 | 0.00 | 0.0 | 31.5 | 3.49 | F |
185 | 186 | 0.453782 | CGGCGGCGGTAAAAAGAAAG | 60.454 | 55.0 | 25.36 | 0.0 | 0.0 | 2.62 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1043 | 1434 | 0.604780 | CCGGATGATGCTGATGGTCC | 60.605 | 60.000 | 0.0 | 0.0 | 0.0 | 4.46 | R |
1917 | 2333 | 1.290009 | GTGTGATTGTGCTTGGCCC | 59.710 | 57.895 | 0.0 | 0.0 | 0.0 | 5.80 | R |
2101 | 2589 | 1.334960 | CGTTGTTTACAGCCTTGCAGG | 60.335 | 52.381 | 0.0 | 0.0 | 38.8 | 4.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 2.633860 | CTGAGCAGGACACAAACCC | 58.366 | 57.895 | 0.00 | 0.00 | 0.00 | 4.11 |
20 | 21 | 0.109342 | CTGAGCAGGACACAAACCCT | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
21 | 22 | 1.347707 | CTGAGCAGGACACAAACCCTA | 59.652 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
22 | 23 | 1.347707 | TGAGCAGGACACAAACCCTAG | 59.652 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
23 | 24 | 0.036875 | AGCAGGACACAAACCCTAGC | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 3.42 |
24 | 25 | 0.250727 | GCAGGACACAAACCCTAGCA | 60.251 | 55.000 | 0.00 | 0.00 | 31.50 | 3.49 |
25 | 26 | 1.817740 | GCAGGACACAAACCCTAGCAA | 60.818 | 52.381 | 0.00 | 0.00 | 31.50 | 3.91 |
26 | 27 | 2.582052 | CAGGACACAAACCCTAGCAAA | 58.418 | 47.619 | 0.00 | 0.00 | 0.00 | 3.68 |
27 | 28 | 2.955660 | CAGGACACAAACCCTAGCAAAA | 59.044 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
28 | 29 | 2.956333 | AGGACACAAACCCTAGCAAAAC | 59.044 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
29 | 30 | 2.956333 | GGACACAAACCCTAGCAAAACT | 59.044 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
30 | 31 | 3.243401 | GGACACAAACCCTAGCAAAACTG | 60.243 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
31 | 32 | 3.361786 | ACACAAACCCTAGCAAAACTGT | 58.638 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
32 | 33 | 4.528920 | ACACAAACCCTAGCAAAACTGTA | 58.471 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
33 | 34 | 4.951094 | ACACAAACCCTAGCAAAACTGTAA | 59.049 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
34 | 35 | 5.067283 | ACACAAACCCTAGCAAAACTGTAAG | 59.933 | 40.000 | 0.00 | 0.00 | 42.29 | 2.34 |
35 | 36 | 5.298276 | CACAAACCCTAGCAAAACTGTAAGA | 59.702 | 40.000 | 0.00 | 0.00 | 37.43 | 2.10 |
36 | 37 | 5.889289 | ACAAACCCTAGCAAAACTGTAAGAA | 59.111 | 36.000 | 0.00 | 0.00 | 37.43 | 2.52 |
37 | 38 | 6.378848 | ACAAACCCTAGCAAAACTGTAAGAAA | 59.621 | 34.615 | 0.00 | 0.00 | 37.43 | 2.52 |
38 | 39 | 6.387041 | AACCCTAGCAAAACTGTAAGAAAC | 57.613 | 37.500 | 0.00 | 0.00 | 37.43 | 2.78 |
39 | 40 | 4.514066 | ACCCTAGCAAAACTGTAAGAAACG | 59.486 | 41.667 | 0.00 | 0.00 | 37.43 | 3.60 |
40 | 41 | 4.753107 | CCCTAGCAAAACTGTAAGAAACGA | 59.247 | 41.667 | 0.00 | 0.00 | 37.43 | 3.85 |
41 | 42 | 5.333875 | CCCTAGCAAAACTGTAAGAAACGAC | 60.334 | 44.000 | 0.00 | 0.00 | 37.43 | 4.34 |
42 | 43 | 5.465724 | CCTAGCAAAACTGTAAGAAACGACT | 59.534 | 40.000 | 0.00 | 0.00 | 37.43 | 4.18 |
43 | 44 | 6.643770 | CCTAGCAAAACTGTAAGAAACGACTA | 59.356 | 38.462 | 0.00 | 0.00 | 37.43 | 2.59 |
44 | 45 | 6.913873 | AGCAAAACTGTAAGAAACGACTAA | 57.086 | 33.333 | 0.00 | 0.00 | 37.43 | 2.24 |
45 | 46 | 7.311364 | AGCAAAACTGTAAGAAACGACTAAA | 57.689 | 32.000 | 0.00 | 0.00 | 37.43 | 1.85 |
46 | 47 | 7.754625 | AGCAAAACTGTAAGAAACGACTAAAA | 58.245 | 30.769 | 0.00 | 0.00 | 37.43 | 1.52 |
47 | 48 | 8.238631 | AGCAAAACTGTAAGAAACGACTAAAAA | 58.761 | 29.630 | 0.00 | 0.00 | 37.43 | 1.94 |
48 | 49 | 8.309019 | GCAAAACTGTAAGAAACGACTAAAAAC | 58.691 | 33.333 | 0.00 | 0.00 | 37.43 | 2.43 |
49 | 50 | 8.509923 | CAAAACTGTAAGAAACGACTAAAAACG | 58.490 | 33.333 | 0.00 | 0.00 | 37.43 | 3.60 |
50 | 51 | 7.524294 | AACTGTAAGAAACGACTAAAAACGA | 57.476 | 32.000 | 0.00 | 0.00 | 37.43 | 3.85 |
51 | 52 | 7.524294 | ACTGTAAGAAACGACTAAAAACGAA | 57.476 | 32.000 | 0.00 | 0.00 | 37.43 | 3.85 |
52 | 53 | 7.615790 | ACTGTAAGAAACGACTAAAAACGAAG | 58.384 | 34.615 | 0.00 | 0.00 | 37.43 | 3.79 |
53 | 54 | 6.413269 | TGTAAGAAACGACTAAAAACGAAGC | 58.587 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
54 | 55 | 4.463515 | AGAAACGACTAAAAACGAAGCC | 57.536 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
55 | 56 | 3.249320 | AGAAACGACTAAAAACGAAGCCC | 59.751 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
56 | 57 | 2.538512 | ACGACTAAAAACGAAGCCCT | 57.461 | 45.000 | 0.00 | 0.00 | 0.00 | 5.19 |
57 | 58 | 2.410939 | ACGACTAAAAACGAAGCCCTC | 58.589 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
58 | 59 | 1.730612 | CGACTAAAAACGAAGCCCTCC | 59.269 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
59 | 60 | 2.082231 | GACTAAAAACGAAGCCCTCCC | 58.918 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
60 | 61 | 1.084289 | CTAAAAACGAAGCCCTCCCG | 58.916 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
61 | 62 | 0.956902 | TAAAAACGAAGCCCTCCCGC | 60.957 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
62 | 63 | 4.717313 | AAACGAAGCCCTCCCGCC | 62.717 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
81 | 82 | 2.514824 | GCCCTTGCCGAGATCCAC | 60.515 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
82 | 83 | 2.190578 | CCCTTGCCGAGATCCACC | 59.809 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
83 | 84 | 2.202932 | CCTTGCCGAGATCCACCG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
84 | 85 | 2.892425 | CTTGCCGAGATCCACCGC | 60.892 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
85 | 86 | 4.812476 | TTGCCGAGATCCACCGCG | 62.812 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
90 | 91 | 4.593864 | GAGATCCACCGCGCCCTC | 62.594 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
92 | 93 | 4.241555 | GATCCACCGCGCCCTCAT | 62.242 | 66.667 | 0.00 | 0.00 | 0.00 | 2.90 |
93 | 94 | 4.552365 | ATCCACCGCGCCCTCATG | 62.552 | 66.667 | 0.00 | 0.00 | 0.00 | 3.07 |
112 | 113 | 4.475444 | CCCTAGGGCCACCGGAGA | 62.475 | 72.222 | 16.90 | 0.00 | 43.47 | 3.71 |
113 | 114 | 2.840102 | CCTAGGGCCACCGGAGAG | 60.840 | 72.222 | 9.46 | 0.00 | 43.47 | 3.20 |
115 | 116 | 3.352748 | TAGGGCCACCGGAGAGGA | 61.353 | 66.667 | 9.46 | 0.00 | 45.00 | 3.71 |
116 | 117 | 2.664835 | CTAGGGCCACCGGAGAGGAT | 62.665 | 65.000 | 9.46 | 0.00 | 45.00 | 3.24 |
117 | 118 | 2.946988 | TAGGGCCACCGGAGAGGATG | 62.947 | 65.000 | 9.46 | 0.00 | 45.00 | 3.51 |
118 | 119 | 4.554036 | GGCCACCGGAGAGGATGC | 62.554 | 72.222 | 9.46 | 0.00 | 45.00 | 3.91 |
119 | 120 | 4.899239 | GCCACCGGAGAGGATGCG | 62.899 | 72.222 | 9.46 | 0.00 | 45.00 | 4.73 |
143 | 144 | 2.032681 | GCGGGAGGCAGAAACACT | 59.967 | 61.111 | 0.00 | 0.00 | 42.87 | 3.55 |
144 | 145 | 1.295423 | GCGGGAGGCAGAAACACTA | 59.705 | 57.895 | 0.00 | 0.00 | 42.87 | 2.74 |
145 | 146 | 0.741221 | GCGGGAGGCAGAAACACTAG | 60.741 | 60.000 | 0.00 | 0.00 | 42.87 | 2.57 |
146 | 147 | 0.608640 | CGGGAGGCAGAAACACTAGT | 59.391 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
147 | 148 | 1.002087 | CGGGAGGCAGAAACACTAGTT | 59.998 | 52.381 | 0.00 | 0.00 | 40.40 | 2.24 |
166 | 167 | 3.745723 | TTTTTGTGGAGGAGGAGGC | 57.254 | 52.632 | 0.00 | 0.00 | 0.00 | 4.70 |
167 | 168 | 0.250727 | TTTTTGTGGAGGAGGAGGCG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
168 | 169 | 2.124507 | TTTTGTGGAGGAGGAGGCGG | 62.125 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
181 | 182 | 4.470170 | GGCGGCGGCGGTAAAAAG | 62.470 | 66.667 | 33.02 | 2.30 | 41.24 | 2.27 |
182 | 183 | 3.424859 | GCGGCGGCGGTAAAAAGA | 61.425 | 61.111 | 33.02 | 0.00 | 0.00 | 2.52 |
183 | 184 | 2.968639 | GCGGCGGCGGTAAAAAGAA | 61.969 | 57.895 | 33.02 | 0.00 | 0.00 | 2.52 |
184 | 185 | 1.575423 | CGGCGGCGGTAAAAAGAAA | 59.425 | 52.632 | 25.36 | 0.00 | 0.00 | 2.52 |
185 | 186 | 0.453782 | CGGCGGCGGTAAAAAGAAAG | 60.454 | 55.000 | 25.36 | 0.00 | 0.00 | 2.62 |
186 | 187 | 0.594602 | GGCGGCGGTAAAAAGAAAGT | 59.405 | 50.000 | 9.78 | 0.00 | 0.00 | 2.66 |
187 | 188 | 1.001048 | GGCGGCGGTAAAAAGAAAGTT | 60.001 | 47.619 | 9.78 | 0.00 | 0.00 | 2.66 |
188 | 189 | 2.544277 | GGCGGCGGTAAAAAGAAAGTTT | 60.544 | 45.455 | 9.78 | 0.00 | 0.00 | 2.66 |
189 | 190 | 3.304592 | GGCGGCGGTAAAAAGAAAGTTTA | 60.305 | 43.478 | 9.78 | 0.00 | 0.00 | 2.01 |
190 | 191 | 4.478699 | GCGGCGGTAAAAAGAAAGTTTAT | 58.521 | 39.130 | 9.78 | 0.00 | 0.00 | 1.40 |
191 | 192 | 4.919168 | GCGGCGGTAAAAAGAAAGTTTATT | 59.081 | 37.500 | 9.78 | 0.00 | 0.00 | 1.40 |
192 | 193 | 5.403166 | GCGGCGGTAAAAAGAAAGTTTATTT | 59.597 | 36.000 | 9.78 | 2.38 | 0.00 | 1.40 |
193 | 194 | 6.399249 | GCGGCGGTAAAAAGAAAGTTTATTTC | 60.399 | 38.462 | 9.78 | 0.00 | 0.00 | 2.17 |
194 | 195 | 6.637658 | CGGCGGTAAAAAGAAAGTTTATTTCA | 59.362 | 34.615 | 8.57 | 0.00 | 0.00 | 2.69 |
195 | 196 | 7.327518 | CGGCGGTAAAAAGAAAGTTTATTTCAT | 59.672 | 33.333 | 8.57 | 4.43 | 0.00 | 2.57 |
196 | 197 | 8.644619 | GGCGGTAAAAAGAAAGTTTATTTCATC | 58.355 | 33.333 | 8.57 | 0.77 | 0.00 | 2.92 |
197 | 198 | 9.187455 | GCGGTAAAAAGAAAGTTTATTTCATCA | 57.813 | 29.630 | 8.57 | 0.00 | 0.00 | 3.07 |
235 | 236 | 9.040939 | TCAATACGATATTAACACTGTCAATGG | 57.959 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
367 | 716 | 5.897377 | AAGTCAACCCAATATTTTCTCGG | 57.103 | 39.130 | 0.00 | 0.00 | 0.00 | 4.63 |
371 | 720 | 6.151144 | AGTCAACCCAATATTTTCTCGGAAAG | 59.849 | 38.462 | 0.00 | 0.00 | 0.00 | 2.62 |
383 | 732 | 2.556622 | TCTCGGAAAGCCATTTTGGTTC | 59.443 | 45.455 | 0.00 | 0.00 | 40.46 | 3.62 |
396 | 745 | 0.958091 | TTGGTTCCGGTGCATTTCAG | 59.042 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
428 | 777 | 4.982916 | CGAAGATGGAGTAATAAACCTCGG | 59.017 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
455 | 804 | 1.702491 | GGTTGGGATTGCGCGAGTAC | 61.702 | 60.000 | 12.10 | 0.00 | 0.00 | 2.73 |
531 | 880 | 1.342672 | GCCCGTATCCCCTCCTTCAA | 61.343 | 60.000 | 0.00 | 0.00 | 0.00 | 2.69 |
709 | 1069 | 0.751452 | GGCTGGCCAGTAGTAGTACC | 59.249 | 60.000 | 32.81 | 19.10 | 35.81 | 3.34 |
734 | 1094 | 4.618965 | AGTACCGCTCCGAAATCTAATTC | 58.381 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
737 | 1097 | 2.544267 | CCGCTCCGAAATCTAATTCCAC | 59.456 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
746 | 1107 | 6.238648 | CCGAAATCTAATTCCACCCATAACAC | 60.239 | 42.308 | 0.00 | 0.00 | 0.00 | 3.32 |
776 | 1137 | 3.539253 | CATTAACTGCATGCGCCTC | 57.461 | 52.632 | 14.09 | 0.00 | 37.32 | 4.70 |
777 | 1138 | 1.019673 | CATTAACTGCATGCGCCTCT | 58.980 | 50.000 | 14.09 | 0.00 | 37.32 | 3.69 |
778 | 1139 | 1.019673 | ATTAACTGCATGCGCCTCTG | 58.980 | 50.000 | 14.09 | 0.38 | 37.32 | 3.35 |
779 | 1140 | 1.647545 | TTAACTGCATGCGCCTCTGC | 61.648 | 55.000 | 14.09 | 16.91 | 37.32 | 4.26 |
780 | 1141 | 2.526450 | TAACTGCATGCGCCTCTGCT | 62.526 | 55.000 | 22.03 | 9.27 | 39.16 | 4.24 |
781 | 1142 | 3.877357 | CTGCATGCGCCTCTGCTG | 61.877 | 66.667 | 22.03 | 18.68 | 39.16 | 4.41 |
782 | 1143 | 4.397832 | TGCATGCGCCTCTGCTGA | 62.398 | 61.111 | 22.03 | 5.69 | 39.16 | 4.26 |
804 | 1165 | 3.839353 | CTGCCCCGGATCAGATGGC | 62.839 | 68.421 | 15.19 | 15.85 | 42.49 | 4.40 |
806 | 1167 | 2.851102 | CCCCGGATCAGATGGCCT | 60.851 | 66.667 | 0.73 | 0.00 | 0.00 | 5.19 |
808 | 1169 | 2.746359 | CCGGATCAGATGGCCTCC | 59.254 | 66.667 | 3.32 | 0.00 | 0.00 | 4.30 |
810 | 1171 | 2.888447 | CGGATCAGATGGCCTCCCC | 61.888 | 68.421 | 3.32 | 0.00 | 0.00 | 4.81 |
811 | 1172 | 1.463018 | GGATCAGATGGCCTCCCCT | 60.463 | 63.158 | 3.32 | 0.00 | 0.00 | 4.79 |
812 | 1173 | 1.487850 | GGATCAGATGGCCTCCCCTC | 61.488 | 65.000 | 3.32 | 0.00 | 0.00 | 4.30 |
813 | 1174 | 1.463018 | ATCAGATGGCCTCCCCTCC | 60.463 | 63.158 | 3.32 | 0.00 | 0.00 | 4.30 |
814 | 1175 | 2.998668 | ATCAGATGGCCTCCCCTCCC | 62.999 | 65.000 | 3.32 | 0.00 | 0.00 | 4.30 |
815 | 1176 | 3.381049 | AGATGGCCTCCCCTCCCT | 61.381 | 66.667 | 3.32 | 0.00 | 0.00 | 4.20 |
869 | 1236 | 3.737172 | AGTGCGCACGCCCATTTC | 61.737 | 61.111 | 32.94 | 7.87 | 41.09 | 2.17 |
883 | 1250 | 2.641815 | CCCATTTCAAATCCCCACCAAA | 59.358 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
917 | 1284 | 1.301677 | GCCAGAGTTTTCGGAGCAGG | 61.302 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1060 | 1451 | 1.544982 | CCAGGACCATCAGCATCATCC | 60.545 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
1170 | 1570 | 1.276844 | GCGGATGCATCTAACGTGC | 59.723 | 57.895 | 25.28 | 15.35 | 42.15 | 5.34 |
1430 | 1834 | 1.550374 | AGGGGGAAGAGGAGGAGGA | 60.550 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
1473 | 1877 | 2.841988 | GGGGAGGAGCAGAGCGAT | 60.842 | 66.667 | 0.00 | 0.00 | 0.00 | 4.58 |
1749 | 2153 | 2.513259 | GGAGGACGACCACCACCAA | 61.513 | 63.158 | 14.86 | 0.00 | 44.54 | 3.67 |
1978 | 2394 | 7.703621 | CCTTGCACATAAATTAGACAGAAATGG | 59.296 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
2081 | 2498 | 9.612620 | CTTTTGTTTATACTGATTCACTGGTTC | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 3.62 |
2101 | 2589 | 8.420374 | TGGTTCTCATTTGTATTCGATACTTC | 57.580 | 34.615 | 0.00 | 0.00 | 36.70 | 3.01 |
2169 | 2660 | 1.133637 | TGGGCAGTTGGAGCAGTAAAA | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 1.52 |
2261 | 2756 | 1.302752 | CACTGCTGCCTGGCTACAA | 60.303 | 57.895 | 21.03 | 0.00 | 0.00 | 2.41 |
2311 | 2983 | 2.923634 | ATTGCCCAGGCCTGAGATGC | 62.924 | 60.000 | 34.91 | 27.11 | 41.09 | 3.91 |
2335 | 3007 | 3.737774 | GTGCATTCAAAGCTTCAGTTTCC | 59.262 | 43.478 | 0.00 | 0.00 | 0.00 | 3.13 |
2337 | 3009 | 4.099881 | TGCATTCAAAGCTTCAGTTTCCTT | 59.900 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
2356 | 3028 | 1.737838 | TGAACTGTTGATGATCGCCC | 58.262 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2368 | 3040 | 1.171308 | GATCGCCCCATGGATCAATG | 58.829 | 55.000 | 15.22 | 2.74 | 39.07 | 2.82 |
2369 | 3041 | 0.896940 | ATCGCCCCATGGATCAATGC | 60.897 | 55.000 | 15.22 | 4.87 | 0.00 | 3.56 |
2435 | 3107 | 6.434340 | ACGAGAGAGTATGTTATGCATGGATA | 59.566 | 38.462 | 10.16 | 2.31 | 38.47 | 2.59 |
2484 | 3318 | 7.931578 | TGTAATCGGTGAAATCCTTTTATGT | 57.068 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2565 | 3402 | 9.569122 | ACTATTCCTAAAGTGTACATGTGTTTT | 57.431 | 29.630 | 9.11 | 6.31 | 0.00 | 2.43 |
2569 | 3406 | 8.597662 | TCCTAAAGTGTACATGTGTTTTCTAC | 57.402 | 34.615 | 9.11 | 0.00 | 0.00 | 2.59 |
2570 | 3407 | 8.426489 | TCCTAAAGTGTACATGTGTTTTCTACT | 58.574 | 33.333 | 9.11 | 0.00 | 0.00 | 2.57 |
2571 | 3408 | 8.709646 | CCTAAAGTGTACATGTGTTTTCTACTC | 58.290 | 37.037 | 9.11 | 0.00 | 0.00 | 2.59 |
2572 | 3409 | 7.492352 | AAAGTGTACATGTGTTTTCTACTCC | 57.508 | 36.000 | 9.11 | 0.00 | 0.00 | 3.85 |
2573 | 3410 | 5.548406 | AGTGTACATGTGTTTTCTACTCCC | 58.452 | 41.667 | 9.11 | 0.00 | 0.00 | 4.30 |
2574 | 3411 | 5.307196 | AGTGTACATGTGTTTTCTACTCCCT | 59.693 | 40.000 | 9.11 | 0.00 | 0.00 | 4.20 |
2575 | 3412 | 5.638234 | GTGTACATGTGTTTTCTACTCCCTC | 59.362 | 44.000 | 9.11 | 0.00 | 0.00 | 4.30 |
2576 | 3413 | 4.287766 | ACATGTGTTTTCTACTCCCTCC | 57.712 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
2577 | 3414 | 3.262420 | CATGTGTTTTCTACTCCCTCCG | 58.738 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2578 | 3415 | 2.322658 | TGTGTTTTCTACTCCCTCCGT | 58.677 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
2579 | 3416 | 2.701951 | TGTGTTTTCTACTCCCTCCGTT | 59.298 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
2580 | 3417 | 3.243975 | TGTGTTTTCTACTCCCTCCGTTC | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
2581 | 3418 | 2.301009 | TGTTTTCTACTCCCTCCGTTCC | 59.699 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2582 | 3419 | 2.301009 | GTTTTCTACTCCCTCCGTTCCA | 59.699 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2583 | 3420 | 2.314071 | TTCTACTCCCTCCGTTCCAA | 57.686 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2584 | 3421 | 2.314071 | TCTACTCCCTCCGTTCCAAA | 57.686 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2585 | 3422 | 2.829023 | TCTACTCCCTCCGTTCCAAAT | 58.171 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
2586 | 3423 | 3.178865 | TCTACTCCCTCCGTTCCAAATT | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
2587 | 3424 | 4.355549 | TCTACTCCCTCCGTTCCAAATTA | 58.644 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2588 | 3425 | 3.345508 | ACTCCCTCCGTTCCAAATTAC | 57.654 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
2589 | 3426 | 2.910977 | ACTCCCTCCGTTCCAAATTACT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
2590 | 3427 | 3.055312 | ACTCCCTCCGTTCCAAATTACTC | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
2591 | 3428 | 2.093869 | TCCCTCCGTTCCAAATTACTCG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2592 | 3429 | 2.354403 | CCCTCCGTTCCAAATTACTCGT | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2593 | 3430 | 2.928116 | CCTCCGTTCCAAATTACTCGTC | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2594 | 3431 | 2.597305 | CTCCGTTCCAAATTACTCGTCG | 59.403 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
2595 | 3432 | 2.030007 | TCCGTTCCAAATTACTCGTCGT | 60.030 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
2596 | 3433 | 2.091588 | CCGTTCCAAATTACTCGTCGTG | 59.908 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2597 | 3434 | 2.091588 | CGTTCCAAATTACTCGTCGTGG | 59.908 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2598 | 3435 | 3.062042 | GTTCCAAATTACTCGTCGTGGT | 58.938 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
2599 | 3436 | 3.389925 | TCCAAATTACTCGTCGTGGTT | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
2600 | 3437 | 3.731089 | TCCAAATTACTCGTCGTGGTTT | 58.269 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
2601 | 3438 | 4.128643 | TCCAAATTACTCGTCGTGGTTTT | 58.871 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
2602 | 3439 | 5.295950 | TCCAAATTACTCGTCGTGGTTTTA | 58.704 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
2603 | 3440 | 5.406175 | TCCAAATTACTCGTCGTGGTTTTAG | 59.594 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2604 | 3441 | 5.178067 | CCAAATTACTCGTCGTGGTTTTAGT | 59.822 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2605 | 3442 | 6.293027 | CCAAATTACTCGTCGTGGTTTTAGTT | 60.293 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
2606 | 3443 | 6.457851 | AATTACTCGTCGTGGTTTTAGTTC | 57.542 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
2607 | 3444 | 3.441496 | ACTCGTCGTGGTTTTAGTTCA | 57.559 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
2608 | 3445 | 3.784338 | ACTCGTCGTGGTTTTAGTTCAA | 58.216 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2609 | 3446 | 4.183101 | ACTCGTCGTGGTTTTAGTTCAAA | 58.817 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
2610 | 3447 | 4.812626 | ACTCGTCGTGGTTTTAGTTCAAAT | 59.187 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2611 | 3448 | 5.295045 | ACTCGTCGTGGTTTTAGTTCAAATT | 59.705 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2612 | 3449 | 6.121613 | TCGTCGTGGTTTTAGTTCAAATTT | 57.878 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2613 | 3450 | 5.966503 | TCGTCGTGGTTTTAGTTCAAATTTG | 59.033 | 36.000 | 12.15 | 12.15 | 0.00 | 2.32 |
2614 | 3451 | 5.966503 | CGTCGTGGTTTTAGTTCAAATTTGA | 59.033 | 36.000 | 16.91 | 16.91 | 34.92 | 2.69 |
2615 | 3452 | 6.469595 | CGTCGTGGTTTTAGTTCAAATTTGAA | 59.530 | 34.615 | 26.01 | 26.01 | 44.31 | 2.69 |
2628 | 3465 | 7.743520 | TTCAAATTTGAACTAAAACCACGAC | 57.256 | 32.000 | 26.01 | 0.00 | 41.88 | 4.34 |
2629 | 3466 | 5.966503 | TCAAATTTGAACTAAAACCACGACG | 59.033 | 36.000 | 18.45 | 0.00 | 33.55 | 5.12 |
2630 | 3467 | 5.738118 | AATTTGAACTAAAACCACGACGA | 57.262 | 34.783 | 0.00 | 0.00 | 0.00 | 4.20 |
2631 | 3468 | 4.782252 | TTTGAACTAAAACCACGACGAG | 57.218 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
2632 | 3469 | 3.441496 | TGAACTAAAACCACGACGAGT | 57.559 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
2633 | 3470 | 4.566545 | TGAACTAAAACCACGACGAGTA | 57.433 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
2634 | 3471 | 4.930963 | TGAACTAAAACCACGACGAGTAA | 58.069 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2635 | 3472 | 5.531634 | TGAACTAAAACCACGACGAGTAAT | 58.468 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
2636 | 3473 | 5.984926 | TGAACTAAAACCACGACGAGTAATT | 59.015 | 36.000 | 0.00 | 1.08 | 0.00 | 1.40 |
2637 | 3474 | 6.479660 | TGAACTAAAACCACGACGAGTAATTT | 59.520 | 34.615 | 0.00 | 0.34 | 0.00 | 1.82 |
2638 | 3475 | 6.219302 | ACTAAAACCACGACGAGTAATTTG | 57.781 | 37.500 | 0.00 | 2.39 | 0.00 | 2.32 |
2639 | 3476 | 4.477302 | AAAACCACGACGAGTAATTTGG | 57.523 | 40.909 | 0.00 | 0.00 | 0.00 | 3.28 |
2640 | 3477 | 3.389925 | AACCACGACGAGTAATTTGGA | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
2641 | 3478 | 3.389925 | ACCACGACGAGTAATTTGGAA | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
2642 | 3479 | 3.062042 | ACCACGACGAGTAATTTGGAAC | 58.938 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
2643 | 3480 | 2.091588 | CCACGACGAGTAATTTGGAACG | 59.908 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2644 | 3481 | 2.091588 | CACGACGAGTAATTTGGAACGG | 59.908 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2645 | 3482 | 2.030007 | ACGACGAGTAATTTGGAACGGA | 60.030 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
2646 | 3483 | 2.597305 | CGACGAGTAATTTGGAACGGAG | 59.403 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2647 | 3484 | 2.928116 | GACGAGTAATTTGGAACGGAGG | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2648 | 3485 | 2.564062 | ACGAGTAATTTGGAACGGAGGA | 59.436 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
2649 | 3486 | 3.007182 | ACGAGTAATTTGGAACGGAGGAA | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
2650 | 3487 | 3.617263 | CGAGTAATTTGGAACGGAGGAAG | 59.383 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
2651 | 3488 | 4.576879 | GAGTAATTTGGAACGGAGGAAGT | 58.423 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
2652 | 3489 | 5.622914 | CGAGTAATTTGGAACGGAGGAAGTA | 60.623 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2653 | 3490 | 5.731591 | AGTAATTTGGAACGGAGGAAGTAG | 58.268 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2654 | 3491 | 3.629142 | ATTTGGAACGGAGGAAGTAGG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
2659 | 3496 | 3.136992 | TGGAACGGAGGAAGTAGGTTTTT | 59.863 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
2715 | 3553 | 1.722011 | CTAAACGCCGAACTGTGGAT | 58.278 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2738 | 3576 | 3.064958 | GGCTCATCAAGTCATCATGTGTG | 59.935 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
2785 | 3623 | 6.003326 | TGTCATCACTTATTCTTTGCTTGGA | 58.997 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2786 | 3624 | 6.072508 | TGTCATCACTTATTCTTTGCTTGGAC | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
2798 | 3636 | 3.347958 | TGCTTGGACGTTTGCTAAAAG | 57.652 | 42.857 | 0.00 | 0.00 | 0.00 | 2.27 |
2806 | 3645 | 6.334202 | TGGACGTTTGCTAAAAGAACATTTT | 58.666 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2845 | 3684 | 4.214545 | CGTACTTTTGCTTGACATGGGTAA | 59.785 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
2850 | 3689 | 7.151976 | ACTTTTGCTTGACATGGGTAATTTAC | 58.848 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
2856 | 3695 | 6.806739 | GCTTGACATGGGTAATTTACTTTGAC | 59.193 | 38.462 | 6.52 | 3.96 | 0.00 | 3.18 |
2863 | 3702 | 6.263516 | GGGTAATTTACTTTGACCCTGTTC | 57.736 | 41.667 | 6.52 | 0.00 | 45.44 | 3.18 |
2887 | 3726 | 2.802774 | CGCTGGAAAACAAAATGCCTGT | 60.803 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
2888 | 3727 | 2.545106 | GCTGGAAAACAAAATGCCTGTG | 59.455 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
2889 | 3728 | 3.795877 | CTGGAAAACAAAATGCCTGTGT | 58.204 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
2890 | 3729 | 3.791245 | TGGAAAACAAAATGCCTGTGTC | 58.209 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
2891 | 3730 | 3.196469 | TGGAAAACAAAATGCCTGTGTCA | 59.804 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
2892 | 3731 | 3.803778 | GGAAAACAAAATGCCTGTGTCAG | 59.196 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
2893 | 3732 | 2.514205 | AACAAAATGCCTGTGTCAGC | 57.486 | 45.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2894 | 3733 | 0.311790 | ACAAAATGCCTGTGTCAGCG | 59.688 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
2895 | 3734 | 0.311790 | CAAAATGCCTGTGTCAGCGT | 59.688 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
2896 | 3735 | 0.593128 | AAAATGCCTGTGTCAGCGTC | 59.407 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
2897 | 3736 | 1.237285 | AAATGCCTGTGTCAGCGTCC | 61.237 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2898 | 3737 | 3.612247 | ATGCCTGTGTCAGCGTCCC | 62.612 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
2899 | 3738 | 4.008933 | GCCTGTGTCAGCGTCCCT | 62.009 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
2900 | 3739 | 2.646175 | GCCTGTGTCAGCGTCCCTA | 61.646 | 63.158 | 0.00 | 0.00 | 0.00 | 3.53 |
2901 | 3740 | 1.972198 | CCTGTGTCAGCGTCCCTAA | 59.028 | 57.895 | 0.00 | 0.00 | 0.00 | 2.69 |
2902 | 3741 | 0.389948 | CCTGTGTCAGCGTCCCTAAC | 60.390 | 60.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2911 | 3750 | 4.525949 | GTCCCTAACGAGGCCGGC | 62.526 | 72.222 | 21.18 | 21.18 | 42.21 | 6.13 |
2930 | 3769 | 3.437795 | CGCAAGGCAGCTCCAAGG | 61.438 | 66.667 | 5.21 | 0.00 | 37.29 | 3.61 |
2931 | 3770 | 2.034687 | GCAAGGCAGCTCCAAGGA | 59.965 | 61.111 | 5.21 | 0.00 | 37.29 | 3.36 |
2932 | 3771 | 1.379576 | GCAAGGCAGCTCCAAGGAT | 60.380 | 57.895 | 5.21 | 0.00 | 37.29 | 3.24 |
2933 | 3772 | 1.382692 | GCAAGGCAGCTCCAAGGATC | 61.383 | 60.000 | 5.21 | 0.00 | 37.29 | 3.36 |
2934 | 3773 | 0.750911 | CAAGGCAGCTCCAAGGATCC | 60.751 | 60.000 | 2.48 | 2.48 | 37.29 | 3.36 |
2935 | 3774 | 0.918310 | AAGGCAGCTCCAAGGATCCT | 60.918 | 55.000 | 9.02 | 9.02 | 37.29 | 3.24 |
2936 | 3775 | 1.153005 | GGCAGCTCCAAGGATCCTG | 60.153 | 63.158 | 17.02 | 9.57 | 34.01 | 3.86 |
2937 | 3776 | 1.606531 | GCAGCTCCAAGGATCCTGT | 59.393 | 57.895 | 17.02 | 2.57 | 0.00 | 4.00 |
2938 | 3777 | 0.463474 | GCAGCTCCAAGGATCCTGTC | 60.463 | 60.000 | 17.02 | 3.01 | 0.00 | 3.51 |
2939 | 3778 | 1.202330 | CAGCTCCAAGGATCCTGTCT | 58.798 | 55.000 | 17.02 | 5.39 | 0.00 | 3.41 |
2940 | 3779 | 1.138661 | CAGCTCCAAGGATCCTGTCTC | 59.861 | 57.143 | 17.02 | 4.13 | 0.00 | 3.36 |
2941 | 3780 | 0.467804 | GCTCCAAGGATCCTGTCTCC | 59.532 | 60.000 | 17.02 | 0.33 | 0.00 | 3.71 |
2942 | 3781 | 1.871418 | CTCCAAGGATCCTGTCTCCA | 58.129 | 55.000 | 17.02 | 0.00 | 35.08 | 3.86 |
2943 | 3782 | 1.484240 | CTCCAAGGATCCTGTCTCCAC | 59.516 | 57.143 | 17.02 | 0.00 | 35.08 | 4.02 |
2944 | 3783 | 0.176680 | CCAAGGATCCTGTCTCCACG | 59.823 | 60.000 | 17.02 | 0.00 | 35.08 | 4.94 |
2945 | 3784 | 1.186200 | CAAGGATCCTGTCTCCACGA | 58.814 | 55.000 | 17.02 | 0.00 | 35.08 | 4.35 |
2946 | 3785 | 1.134965 | CAAGGATCCTGTCTCCACGAC | 60.135 | 57.143 | 17.02 | 0.00 | 43.14 | 4.34 |
2947 | 3786 | 0.684805 | AGGATCCTGTCTCCACGACC | 60.685 | 60.000 | 15.29 | 0.00 | 42.13 | 4.79 |
2948 | 3787 | 1.677637 | GGATCCTGTCTCCACGACCC | 61.678 | 65.000 | 3.84 | 0.00 | 42.13 | 4.46 |
2949 | 3788 | 1.677637 | GATCCTGTCTCCACGACCCC | 61.678 | 65.000 | 0.00 | 0.00 | 42.13 | 4.95 |
2950 | 3789 | 3.760035 | CCTGTCTCCACGACCCCG | 61.760 | 72.222 | 0.00 | 0.00 | 42.13 | 5.73 |
2951 | 3790 | 4.436998 | CTGTCTCCACGACCCCGC | 62.437 | 72.222 | 0.00 | 0.00 | 42.13 | 6.13 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1 | 2 | 0.109342 | AGGGTTTGTGTCCTGCTCAG | 59.891 | 55.000 | 0.00 | 0.00 | 31.11 | 3.35 |
2 | 3 | 1.347707 | CTAGGGTTTGTGTCCTGCTCA | 59.652 | 52.381 | 0.00 | 0.00 | 34.75 | 4.26 |
3 | 4 | 1.946283 | GCTAGGGTTTGTGTCCTGCTC | 60.946 | 57.143 | 0.00 | 0.00 | 34.75 | 4.26 |
4 | 5 | 0.036875 | GCTAGGGTTTGTGTCCTGCT | 59.963 | 55.000 | 0.00 | 0.00 | 34.75 | 4.24 |
5 | 6 | 0.250727 | TGCTAGGGTTTGTGTCCTGC | 60.251 | 55.000 | 0.00 | 0.00 | 34.75 | 4.85 |
6 | 7 | 2.270352 | TTGCTAGGGTTTGTGTCCTG | 57.730 | 50.000 | 0.00 | 0.00 | 34.75 | 3.86 |
7 | 8 | 2.956333 | GTTTTGCTAGGGTTTGTGTCCT | 59.044 | 45.455 | 0.00 | 0.00 | 37.18 | 3.85 |
8 | 9 | 2.956333 | AGTTTTGCTAGGGTTTGTGTCC | 59.044 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
9 | 10 | 3.380320 | ACAGTTTTGCTAGGGTTTGTGTC | 59.620 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
10 | 11 | 3.361786 | ACAGTTTTGCTAGGGTTTGTGT | 58.638 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
11 | 12 | 5.298276 | TCTTACAGTTTTGCTAGGGTTTGTG | 59.702 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
12 | 13 | 5.442391 | TCTTACAGTTTTGCTAGGGTTTGT | 58.558 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
13 | 14 | 6.385649 | TTCTTACAGTTTTGCTAGGGTTTG | 57.614 | 37.500 | 0.00 | 0.00 | 0.00 | 2.93 |
14 | 15 | 6.459161 | CGTTTCTTACAGTTTTGCTAGGGTTT | 60.459 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
15 | 16 | 5.008316 | CGTTTCTTACAGTTTTGCTAGGGTT | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 4.11 |
16 | 17 | 4.514066 | CGTTTCTTACAGTTTTGCTAGGGT | 59.486 | 41.667 | 0.00 | 0.00 | 0.00 | 4.34 |
17 | 18 | 4.753107 | TCGTTTCTTACAGTTTTGCTAGGG | 59.247 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
18 | 19 | 5.465724 | AGTCGTTTCTTACAGTTTTGCTAGG | 59.534 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
19 | 20 | 6.526566 | AGTCGTTTCTTACAGTTTTGCTAG | 57.473 | 37.500 | 0.00 | 0.00 | 0.00 | 3.42 |
20 | 21 | 8.422973 | TTTAGTCGTTTCTTACAGTTTTGCTA | 57.577 | 30.769 | 0.00 | 0.00 | 0.00 | 3.49 |
21 | 22 | 6.913873 | TTAGTCGTTTCTTACAGTTTTGCT | 57.086 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
22 | 23 | 7.958112 | TTTTAGTCGTTTCTTACAGTTTTGC | 57.042 | 32.000 | 0.00 | 0.00 | 0.00 | 3.68 |
23 | 24 | 8.509923 | CGTTTTTAGTCGTTTCTTACAGTTTTG | 58.490 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
24 | 25 | 8.442384 | TCGTTTTTAGTCGTTTCTTACAGTTTT | 58.558 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
25 | 26 | 7.962917 | TCGTTTTTAGTCGTTTCTTACAGTTT | 58.037 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
26 | 27 | 7.524294 | TCGTTTTTAGTCGTTTCTTACAGTT | 57.476 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
27 | 28 | 7.524294 | TTCGTTTTTAGTCGTTTCTTACAGT | 57.476 | 32.000 | 0.00 | 0.00 | 0.00 | 3.55 |
28 | 29 | 6.568965 | GCTTCGTTTTTAGTCGTTTCTTACAG | 59.431 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
29 | 30 | 6.413269 | GCTTCGTTTTTAGTCGTTTCTTACA | 58.587 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
30 | 31 | 5.842843 | GGCTTCGTTTTTAGTCGTTTCTTAC | 59.157 | 40.000 | 0.00 | 0.00 | 0.00 | 2.34 |
31 | 32 | 5.050159 | GGGCTTCGTTTTTAGTCGTTTCTTA | 60.050 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
32 | 33 | 4.260907 | GGGCTTCGTTTTTAGTCGTTTCTT | 60.261 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
33 | 34 | 3.249320 | GGGCTTCGTTTTTAGTCGTTTCT | 59.751 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
34 | 35 | 3.249320 | AGGGCTTCGTTTTTAGTCGTTTC | 59.751 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
35 | 36 | 3.208594 | AGGGCTTCGTTTTTAGTCGTTT | 58.791 | 40.909 | 0.00 | 0.00 | 0.00 | 3.60 |
36 | 37 | 2.804527 | GAGGGCTTCGTTTTTAGTCGTT | 59.195 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
37 | 38 | 2.410939 | GAGGGCTTCGTTTTTAGTCGT | 58.589 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
38 | 39 | 1.730612 | GGAGGGCTTCGTTTTTAGTCG | 59.269 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
39 | 40 | 2.082231 | GGGAGGGCTTCGTTTTTAGTC | 58.918 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
40 | 41 | 1.609841 | CGGGAGGGCTTCGTTTTTAGT | 60.610 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
41 | 42 | 1.084289 | CGGGAGGGCTTCGTTTTTAG | 58.916 | 55.000 | 0.00 | 0.00 | 0.00 | 1.85 |
42 | 43 | 0.956902 | GCGGGAGGGCTTCGTTTTTA | 60.957 | 55.000 | 0.00 | 0.00 | 0.00 | 1.52 |
43 | 44 | 2.265904 | GCGGGAGGGCTTCGTTTTT | 61.266 | 57.895 | 0.00 | 0.00 | 0.00 | 1.94 |
44 | 45 | 2.671963 | GCGGGAGGGCTTCGTTTT | 60.672 | 61.111 | 0.00 | 0.00 | 0.00 | 2.43 |
45 | 46 | 4.717313 | GGCGGGAGGGCTTCGTTT | 62.717 | 66.667 | 0.00 | 0.00 | 38.40 | 3.60 |
64 | 65 | 2.514824 | GTGGATCTCGGCAAGGGC | 60.515 | 66.667 | 0.00 | 0.00 | 40.13 | 5.19 |
65 | 66 | 2.190578 | GGTGGATCTCGGCAAGGG | 59.809 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
66 | 67 | 2.202932 | CGGTGGATCTCGGCAAGG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
67 | 68 | 2.892425 | GCGGTGGATCTCGGCAAG | 60.892 | 66.667 | 12.88 | 0.00 | 0.00 | 4.01 |
68 | 69 | 4.812476 | CGCGGTGGATCTCGGCAA | 62.812 | 66.667 | 0.00 | 0.00 | 0.00 | 4.52 |
73 | 74 | 4.593864 | GAGGGCGCGGTGGATCTC | 62.594 | 72.222 | 8.83 | 0.00 | 0.00 | 2.75 |
75 | 76 | 4.241555 | ATGAGGGCGCGGTGGATC | 62.242 | 66.667 | 8.83 | 0.00 | 0.00 | 3.36 |
76 | 77 | 4.552365 | CATGAGGGCGCGGTGGAT | 62.552 | 66.667 | 8.83 | 0.00 | 0.00 | 3.41 |
95 | 96 | 4.475444 | TCTCCGGTGGCCCTAGGG | 62.475 | 72.222 | 24.89 | 24.89 | 38.57 | 3.53 |
96 | 97 | 2.840102 | CTCTCCGGTGGCCCTAGG | 60.840 | 72.222 | 0.06 | 0.06 | 0.00 | 3.02 |
97 | 98 | 2.664835 | ATCCTCTCCGGTGGCCCTAG | 62.665 | 65.000 | 0.00 | 0.00 | 0.00 | 3.02 |
98 | 99 | 2.711899 | ATCCTCTCCGGTGGCCCTA | 61.712 | 63.158 | 0.00 | 0.00 | 0.00 | 3.53 |
99 | 100 | 4.095400 | ATCCTCTCCGGTGGCCCT | 62.095 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
100 | 101 | 3.866582 | CATCCTCTCCGGTGGCCC | 61.867 | 72.222 | 0.00 | 0.00 | 0.00 | 5.80 |
101 | 102 | 4.554036 | GCATCCTCTCCGGTGGCC | 62.554 | 72.222 | 0.00 | 0.00 | 0.00 | 5.36 |
102 | 103 | 4.899239 | CGCATCCTCTCCGGTGGC | 62.899 | 72.222 | 0.00 | 0.00 | 0.00 | 5.01 |
103 | 104 | 4.227134 | CCGCATCCTCTCCGGTGG | 62.227 | 72.222 | 0.00 | 2.66 | 37.36 | 4.61 |
104 | 105 | 4.899239 | GCCGCATCCTCTCCGGTG | 62.899 | 72.222 | 0.00 | 0.00 | 43.70 | 4.94 |
123 | 124 | 2.747855 | GTTTCTGCCTCCCGCTGG | 60.748 | 66.667 | 0.00 | 0.00 | 38.78 | 4.85 |
124 | 125 | 2.032528 | TGTTTCTGCCTCCCGCTG | 59.967 | 61.111 | 0.00 | 0.00 | 38.78 | 5.18 |
125 | 126 | 1.192146 | TAGTGTTTCTGCCTCCCGCT | 61.192 | 55.000 | 0.00 | 0.00 | 38.78 | 5.52 |
126 | 127 | 0.741221 | CTAGTGTTTCTGCCTCCCGC | 60.741 | 60.000 | 0.00 | 0.00 | 38.31 | 6.13 |
127 | 128 | 0.608640 | ACTAGTGTTTCTGCCTCCCG | 59.391 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
128 | 129 | 2.861147 | AACTAGTGTTTCTGCCTCCC | 57.139 | 50.000 | 0.00 | 0.00 | 31.37 | 4.30 |
148 | 149 | 0.250727 | CGCCTCCTCCTCCACAAAAA | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 1.94 |
149 | 150 | 1.374947 | CGCCTCCTCCTCCACAAAA | 59.625 | 57.895 | 0.00 | 0.00 | 0.00 | 2.44 |
150 | 151 | 2.592993 | CCGCCTCCTCCTCCACAAA | 61.593 | 63.158 | 0.00 | 0.00 | 0.00 | 2.83 |
151 | 152 | 3.003173 | CCGCCTCCTCCTCCACAA | 61.003 | 66.667 | 0.00 | 0.00 | 0.00 | 3.33 |
164 | 165 | 4.470170 | CTTTTTACCGCCGCCGCC | 62.470 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
165 | 166 | 2.460837 | TTTCTTTTTACCGCCGCCGC | 62.461 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
166 | 167 | 0.453782 | CTTTCTTTTTACCGCCGCCG | 60.454 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
167 | 168 | 0.594602 | ACTTTCTTTTTACCGCCGCC | 59.405 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
168 | 169 | 2.410785 | AACTTTCTTTTTACCGCCGC | 57.589 | 45.000 | 0.00 | 0.00 | 0.00 | 6.53 |
169 | 170 | 6.637658 | TGAAATAAACTTTCTTTTTACCGCCG | 59.362 | 34.615 | 0.08 | 0.00 | 0.00 | 6.46 |
170 | 171 | 7.933728 | TGAAATAAACTTTCTTTTTACCGCC | 57.066 | 32.000 | 0.08 | 0.00 | 0.00 | 6.13 |
171 | 172 | 9.187455 | TGATGAAATAAACTTTCTTTTTACCGC | 57.813 | 29.630 | 0.08 | 0.00 | 0.00 | 5.68 |
215 | 216 | 8.587952 | TCATACCATTGACAGTGTTAATATCG | 57.412 | 34.615 | 12.47 | 6.56 | 0.00 | 2.92 |
322 | 332 | 9.036980 | ACTTTATTCTCAATGAGTACCAGTAGT | 57.963 | 33.333 | 10.36 | 4.27 | 0.00 | 2.73 |
323 | 333 | 9.522804 | GACTTTATTCTCAATGAGTACCAGTAG | 57.477 | 37.037 | 10.36 | 3.71 | 0.00 | 2.57 |
367 | 716 | 1.343142 | ACCGGAACCAAAATGGCTTTC | 59.657 | 47.619 | 9.46 | 0.00 | 42.67 | 2.62 |
371 | 720 | 1.374125 | GCACCGGAACCAAAATGGC | 60.374 | 57.895 | 9.46 | 0.00 | 42.67 | 4.40 |
383 | 732 | 2.393764 | GTTTGAACTGAAATGCACCGG | 58.606 | 47.619 | 0.00 | 0.00 | 0.00 | 5.28 |
396 | 745 | 1.798813 | ACTCCATCTTCGCGTTTGAAC | 59.201 | 47.619 | 5.77 | 0.00 | 0.00 | 3.18 |
428 | 777 | 1.434696 | CAATCCCAACCATCGCTGC | 59.565 | 57.895 | 0.00 | 0.00 | 0.00 | 5.25 |
455 | 804 | 1.332180 | ACACGTCGCGTTGTGATACG | 61.332 | 55.000 | 29.96 | 22.01 | 44.09 | 3.06 |
522 | 871 | 1.860950 | CGTACGCATCATTGAAGGAGG | 59.139 | 52.381 | 0.52 | 0.00 | 0.00 | 4.30 |
531 | 880 | 1.139816 | CGTCTGCACGTACGCATCAT | 61.140 | 55.000 | 16.72 | 0.00 | 42.06 | 2.45 |
549 | 898 | 1.977594 | GCTTGCCCGTGGTATGAACG | 61.978 | 60.000 | 0.00 | 0.00 | 40.70 | 3.95 |
555 | 904 | 1.481901 | TTACCAGCTTGCCCGTGGTA | 61.482 | 55.000 | 7.77 | 7.77 | 42.99 | 3.25 |
558 | 907 | 1.802636 | CATTACCAGCTTGCCCGTG | 59.197 | 57.895 | 0.00 | 0.00 | 0.00 | 4.94 |
674 | 1034 | 3.419759 | CCGAAGCCGAACCAACCG | 61.420 | 66.667 | 0.00 | 0.00 | 38.22 | 4.44 |
698 | 1058 | 2.483889 | GCGGTACTCGGGTACTACTACT | 60.484 | 54.545 | 24.19 | 0.00 | 45.41 | 2.57 |
699 | 1059 | 1.867865 | GCGGTACTCGGGTACTACTAC | 59.132 | 57.143 | 24.19 | 7.10 | 45.41 | 2.73 |
700 | 1060 | 1.762957 | AGCGGTACTCGGGTACTACTA | 59.237 | 52.381 | 24.19 | 0.00 | 45.41 | 1.82 |
734 | 1094 | 0.322098 | TTGCCGAGTGTTATGGGTGG | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
737 | 1097 | 1.308998 | GGATTGCCGAGTGTTATGGG | 58.691 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
779 | 1140 | 3.746949 | GATCCGGGGCAGCAGTCAG | 62.747 | 68.421 | 0.00 | 0.00 | 0.00 | 3.51 |
780 | 1141 | 3.785859 | GATCCGGGGCAGCAGTCA | 61.786 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
781 | 1142 | 3.746949 | CTGATCCGGGGCAGCAGTC | 62.747 | 68.421 | 0.00 | 0.00 | 0.00 | 3.51 |
782 | 1143 | 3.790437 | CTGATCCGGGGCAGCAGT | 61.790 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
804 | 1165 | 1.345715 | ATTAACGCAGGGAGGGGAGG | 61.346 | 60.000 | 0.00 | 0.00 | 33.80 | 4.30 |
806 | 1167 | 1.342672 | GGATTAACGCAGGGAGGGGA | 61.343 | 60.000 | 0.00 | 0.00 | 33.80 | 4.81 |
808 | 1169 | 1.148498 | GGGATTAACGCAGGGAGGG | 59.852 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
810 | 1171 | 0.810031 | CACGGGATTAACGCAGGGAG | 60.810 | 60.000 | 0.00 | 0.00 | 34.00 | 4.30 |
811 | 1172 | 1.219664 | CACGGGATTAACGCAGGGA | 59.780 | 57.895 | 0.00 | 0.00 | 34.00 | 4.20 |
812 | 1173 | 2.469516 | GCACGGGATTAACGCAGGG | 61.470 | 63.158 | 0.00 | 0.00 | 34.00 | 4.45 |
813 | 1174 | 2.469516 | GGCACGGGATTAACGCAGG | 61.470 | 63.158 | 0.00 | 0.00 | 34.00 | 4.85 |
814 | 1175 | 3.098555 | GGCACGGGATTAACGCAG | 58.901 | 61.111 | 0.00 | 0.00 | 34.00 | 5.18 |
852 | 1219 | 3.737172 | GAAATGGGCGTGCGCACT | 61.737 | 61.111 | 35.27 | 17.26 | 46.30 | 4.40 |
869 | 1236 | 1.623311 | GGAGGTTTTGGTGGGGATTTG | 59.377 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
883 | 1250 | 1.842381 | CTGGCGGAAGGAAGGAGGTT | 61.842 | 60.000 | 0.00 | 0.00 | 0.00 | 3.50 |
970 | 1337 | 1.476110 | CCAGACCTCCTCCTAGACGAG | 60.476 | 61.905 | 0.00 | 0.00 | 0.00 | 4.18 |
986 | 1353 | 0.382158 | GTGCATCTCGTCGATCCAGA | 59.618 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1043 | 1434 | 0.604780 | CCGGATGATGCTGATGGTCC | 60.605 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1060 | 1451 | 1.374252 | CGTTCTTGGTGAGGTCCCG | 60.374 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
1170 | 1570 | 3.172099 | CTGCACACACGCACACAGG | 62.172 | 63.158 | 0.00 | 0.00 | 36.86 | 4.00 |
1272 | 1676 | 2.540910 | TCCAGGTCCTCCTCCCCT | 60.541 | 66.667 | 0.00 | 0.00 | 43.07 | 4.79 |
1664 | 2068 | 4.180946 | CCTCCTCCTCGTGCGACG | 62.181 | 72.222 | 2.79 | 2.79 | 44.19 | 5.12 |
1731 | 2135 | 2.513259 | TTGGTGGTGGTCGTCCTCC | 61.513 | 63.158 | 12.18 | 12.18 | 44.92 | 4.30 |
1866 | 2270 | 1.814527 | GACGACGAGGCCCAGTATT | 59.185 | 57.895 | 0.00 | 0.00 | 0.00 | 1.89 |
1917 | 2333 | 1.290009 | GTGTGATTGTGCTTGGCCC | 59.710 | 57.895 | 0.00 | 0.00 | 0.00 | 5.80 |
2081 | 2498 | 6.479990 | TGCAGGAAGTATCGAATACAAATGAG | 59.520 | 38.462 | 0.00 | 0.00 | 38.21 | 2.90 |
2101 | 2589 | 1.334960 | CGTTGTTTACAGCCTTGCAGG | 60.335 | 52.381 | 0.00 | 0.00 | 38.80 | 4.85 |
2186 | 2677 | 5.132502 | TGTCATCATACCAATGTTCCATCC | 58.867 | 41.667 | 0.00 | 0.00 | 34.50 | 3.51 |
2198 | 2689 | 9.520204 | CCAGAATTAAACATTTGTCATCATACC | 57.480 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
2202 | 2697 | 7.093814 | CCTCCCAGAATTAAACATTTGTCATCA | 60.094 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
2203 | 2698 | 7.122650 | TCCTCCCAGAATTAAACATTTGTCATC | 59.877 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
2204 | 2699 | 6.953520 | TCCTCCCAGAATTAAACATTTGTCAT | 59.046 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
2205 | 2700 | 6.310941 | TCCTCCCAGAATTAAACATTTGTCA | 58.689 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2206 | 2701 | 6.834168 | TCCTCCCAGAATTAAACATTTGTC | 57.166 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2208 | 2703 | 7.123247 | AGACATCCTCCCAGAATTAAACATTTG | 59.877 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
2311 | 2983 | 3.637998 | ACTGAAGCTTTGAATGCACAG | 57.362 | 42.857 | 19.65 | 19.65 | 40.21 | 3.66 |
2335 | 3007 | 2.096496 | GGGCGATCATCAACAGTTCAAG | 59.904 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2337 | 3009 | 1.678728 | GGGGCGATCATCAACAGTTCA | 60.679 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
2356 | 3028 | 3.028850 | AGGTGAAAGCATTGATCCATGG | 58.971 | 45.455 | 4.97 | 4.97 | 36.26 | 3.66 |
2441 | 3113 | 8.074370 | CGATTACAAACTAGAATACGAGATGGA | 58.926 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
2448 | 3120 | 7.745022 | TTCACCGATTACAAACTAGAATACG | 57.255 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2451 | 3123 | 8.047310 | AGGATTTCACCGATTACAAACTAGAAT | 58.953 | 33.333 | 0.00 | 0.00 | 34.73 | 2.40 |
2452 | 3124 | 7.391620 | AGGATTTCACCGATTACAAACTAGAA | 58.608 | 34.615 | 0.00 | 0.00 | 34.73 | 2.10 |
2484 | 3318 | 7.872993 | GGAATAATCCTCGATTACTCACAATGA | 59.127 | 37.037 | 5.52 | 0.00 | 42.93 | 2.57 |
2565 | 3402 | 2.314071 | TTTGGAACGGAGGGAGTAGA | 57.686 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2566 | 3403 | 3.629142 | AATTTGGAACGGAGGGAGTAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2569 | 3406 | 3.532542 | GAGTAATTTGGAACGGAGGGAG | 58.467 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2570 | 3407 | 2.093869 | CGAGTAATTTGGAACGGAGGGA | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2571 | 3408 | 2.277084 | CGAGTAATTTGGAACGGAGGG | 58.723 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2572 | 3409 | 2.928116 | GACGAGTAATTTGGAACGGAGG | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2573 | 3410 | 2.597305 | CGACGAGTAATTTGGAACGGAG | 59.403 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2574 | 3411 | 2.030007 | ACGACGAGTAATTTGGAACGGA | 60.030 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
2575 | 3412 | 2.091588 | CACGACGAGTAATTTGGAACGG | 59.908 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2576 | 3413 | 2.091588 | CCACGACGAGTAATTTGGAACG | 59.908 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2577 | 3414 | 3.062042 | ACCACGACGAGTAATTTGGAAC | 58.938 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
2578 | 3415 | 3.389925 | ACCACGACGAGTAATTTGGAA | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
2579 | 3416 | 3.389925 | AACCACGACGAGTAATTTGGA | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
2580 | 3417 | 4.477302 | AAAACCACGACGAGTAATTTGG | 57.523 | 40.909 | 0.00 | 0.00 | 0.00 | 3.28 |
2581 | 3418 | 6.219302 | ACTAAAACCACGACGAGTAATTTG | 57.781 | 37.500 | 0.00 | 2.39 | 0.00 | 2.32 |
2582 | 3419 | 6.479660 | TGAACTAAAACCACGACGAGTAATTT | 59.520 | 34.615 | 0.00 | 0.34 | 0.00 | 1.82 |
2583 | 3420 | 5.984926 | TGAACTAAAACCACGACGAGTAATT | 59.015 | 36.000 | 0.00 | 1.08 | 0.00 | 1.40 |
2584 | 3421 | 5.531634 | TGAACTAAAACCACGACGAGTAAT | 58.468 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
2585 | 3422 | 4.930963 | TGAACTAAAACCACGACGAGTAA | 58.069 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2586 | 3423 | 4.566545 | TGAACTAAAACCACGACGAGTA | 57.433 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
2587 | 3424 | 3.441496 | TGAACTAAAACCACGACGAGT | 57.559 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
2588 | 3425 | 4.782252 | TTTGAACTAAAACCACGACGAG | 57.218 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
2589 | 3426 | 5.738118 | AATTTGAACTAAAACCACGACGA | 57.262 | 34.783 | 0.00 | 0.00 | 0.00 | 4.20 |
2590 | 3427 | 5.966503 | TCAAATTTGAACTAAAACCACGACG | 59.033 | 36.000 | 18.45 | 0.00 | 33.55 | 5.12 |
2591 | 3428 | 7.743520 | TTCAAATTTGAACTAAAACCACGAC | 57.256 | 32.000 | 26.01 | 0.00 | 41.88 | 4.34 |
2604 | 3441 | 6.469595 | CGTCGTGGTTTTAGTTCAAATTTGAA | 59.530 | 34.615 | 26.01 | 26.01 | 44.31 | 2.69 |
2605 | 3442 | 5.966503 | CGTCGTGGTTTTAGTTCAAATTTGA | 59.033 | 36.000 | 16.91 | 16.91 | 34.92 | 2.69 |
2606 | 3443 | 5.966503 | TCGTCGTGGTTTTAGTTCAAATTTG | 59.033 | 36.000 | 12.15 | 12.15 | 0.00 | 2.32 |
2607 | 3444 | 6.121613 | TCGTCGTGGTTTTAGTTCAAATTT | 57.878 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2608 | 3445 | 5.295045 | ACTCGTCGTGGTTTTAGTTCAAATT | 59.705 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2609 | 3446 | 4.812626 | ACTCGTCGTGGTTTTAGTTCAAAT | 59.187 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2610 | 3447 | 4.183101 | ACTCGTCGTGGTTTTAGTTCAAA | 58.817 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
2611 | 3448 | 3.784338 | ACTCGTCGTGGTTTTAGTTCAA | 58.216 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2612 | 3449 | 3.441496 | ACTCGTCGTGGTTTTAGTTCA | 57.559 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
2613 | 3450 | 6.457851 | AATTACTCGTCGTGGTTTTAGTTC | 57.542 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
2614 | 3451 | 6.293027 | CCAAATTACTCGTCGTGGTTTTAGTT | 60.293 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
2615 | 3452 | 5.178067 | CCAAATTACTCGTCGTGGTTTTAGT | 59.822 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2616 | 3453 | 5.406175 | TCCAAATTACTCGTCGTGGTTTTAG | 59.594 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2617 | 3454 | 5.295950 | TCCAAATTACTCGTCGTGGTTTTA | 58.704 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
2618 | 3455 | 4.128643 | TCCAAATTACTCGTCGTGGTTTT | 58.871 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
2619 | 3456 | 3.731089 | TCCAAATTACTCGTCGTGGTTT | 58.269 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
2620 | 3457 | 3.389925 | TCCAAATTACTCGTCGTGGTT | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
2621 | 3458 | 3.062042 | GTTCCAAATTACTCGTCGTGGT | 58.938 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
2622 | 3459 | 2.091588 | CGTTCCAAATTACTCGTCGTGG | 59.908 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2623 | 3460 | 2.091588 | CCGTTCCAAATTACTCGTCGTG | 59.908 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2624 | 3461 | 2.030007 | TCCGTTCCAAATTACTCGTCGT | 60.030 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
2625 | 3462 | 2.597305 | CTCCGTTCCAAATTACTCGTCG | 59.403 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
2626 | 3463 | 2.928116 | CCTCCGTTCCAAATTACTCGTC | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2627 | 3464 | 2.564062 | TCCTCCGTTCCAAATTACTCGT | 59.436 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
2628 | 3465 | 3.241067 | TCCTCCGTTCCAAATTACTCG | 57.759 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
2629 | 3466 | 4.576879 | ACTTCCTCCGTTCCAAATTACTC | 58.423 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2630 | 3467 | 4.635699 | ACTTCCTCCGTTCCAAATTACT | 57.364 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
2631 | 3468 | 4.874396 | CCTACTTCCTCCGTTCCAAATTAC | 59.126 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
2632 | 3469 | 4.533311 | ACCTACTTCCTCCGTTCCAAATTA | 59.467 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2633 | 3470 | 3.329814 | ACCTACTTCCTCCGTTCCAAATT | 59.670 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
2634 | 3471 | 2.910977 | ACCTACTTCCTCCGTTCCAAAT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
2635 | 3472 | 2.332117 | ACCTACTTCCTCCGTTCCAAA | 58.668 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
2636 | 3473 | 2.019807 | ACCTACTTCCTCCGTTCCAA | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2637 | 3474 | 2.019807 | AACCTACTTCCTCCGTTCCA | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2638 | 3475 | 3.413846 | AAAACCTACTTCCTCCGTTCC | 57.586 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
2639 | 3476 | 5.545588 | ACTAAAAACCTACTTCCTCCGTTC | 58.454 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
2640 | 3477 | 5.557576 | ACTAAAAACCTACTTCCTCCGTT | 57.442 | 39.130 | 0.00 | 0.00 | 0.00 | 4.44 |
2641 | 3478 | 6.041979 | TGTTACTAAAAACCTACTTCCTCCGT | 59.958 | 38.462 | 0.00 | 0.00 | 0.00 | 4.69 |
2642 | 3479 | 6.458210 | TGTTACTAAAAACCTACTTCCTCCG | 58.542 | 40.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2643 | 3480 | 7.716560 | TGTTGTTACTAAAAACCTACTTCCTCC | 59.283 | 37.037 | 0.21 | 0.00 | 0.00 | 4.30 |
2644 | 3481 | 8.667076 | TGTTGTTACTAAAAACCTACTTCCTC | 57.333 | 34.615 | 0.21 | 0.00 | 0.00 | 3.71 |
2645 | 3482 | 9.465199 | TTTGTTGTTACTAAAAACCTACTTCCT | 57.535 | 29.630 | 0.21 | 0.00 | 0.00 | 3.36 |
2715 | 3553 | 3.275999 | CACATGATGACTTGATGAGCCA | 58.724 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
2738 | 3576 | 8.130307 | ACACTTTCATTTTCAGCACAAAATAC | 57.870 | 30.769 | 5.55 | 0.00 | 34.77 | 1.89 |
2785 | 3623 | 7.464045 | GCTTCAAAATGTTCTTTTAGCAAACGT | 60.464 | 33.333 | 0.00 | 0.00 | 0.00 | 3.99 |
2786 | 3624 | 6.840789 | GCTTCAAAATGTTCTTTTAGCAAACG | 59.159 | 34.615 | 0.00 | 0.00 | 0.00 | 3.60 |
2798 | 3636 | 4.449068 | TCAGAGACGAGCTTCAAAATGTTC | 59.551 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2830 | 3669 | 6.491745 | TCAAAGTAAATTACCCATGTCAAGCA | 59.508 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
2845 | 3684 | 4.324267 | CGAGGAACAGGGTCAAAGTAAAT | 58.676 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2850 | 3689 | 0.035458 | AGCGAGGAACAGGGTCAAAG | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2863 | 3702 | 2.061028 | GCATTTTGTTTTCCAGCGAGG | 58.939 | 47.619 | 0.00 | 0.00 | 39.47 | 4.63 |
2894 | 3733 | 4.525949 | GCCGGCCTCGTTAGGGAC | 62.526 | 72.222 | 18.11 | 0.00 | 43.87 | 4.46 |
2912 | 3751 | 3.437795 | CTTGGAGCTGCCTTGCGG | 61.438 | 66.667 | 1.53 | 0.00 | 37.63 | 5.69 |
2913 | 3752 | 3.437795 | CCTTGGAGCTGCCTTGCG | 61.438 | 66.667 | 1.53 | 0.00 | 37.63 | 4.85 |
2914 | 3753 | 1.379576 | ATCCTTGGAGCTGCCTTGC | 60.380 | 57.895 | 1.53 | 0.00 | 37.63 | 4.01 |
2915 | 3754 | 0.750911 | GGATCCTTGGAGCTGCCTTG | 60.751 | 60.000 | 3.84 | 0.00 | 37.63 | 3.61 |
2916 | 3755 | 0.918310 | AGGATCCTTGGAGCTGCCTT | 60.918 | 55.000 | 9.02 | 0.00 | 37.63 | 4.35 |
2917 | 3756 | 1.307691 | AGGATCCTTGGAGCTGCCT | 60.308 | 57.895 | 9.02 | 1.86 | 37.63 | 4.75 |
2918 | 3757 | 1.153005 | CAGGATCCTTGGAGCTGCC | 60.153 | 63.158 | 13.00 | 0.00 | 37.10 | 4.85 |
2919 | 3758 | 0.463474 | GACAGGATCCTTGGAGCTGC | 60.463 | 60.000 | 13.00 | 0.00 | 0.00 | 5.25 |
2920 | 3759 | 1.138661 | GAGACAGGATCCTTGGAGCTG | 59.861 | 57.143 | 13.00 | 1.97 | 0.00 | 4.24 |
2921 | 3760 | 1.494960 | GAGACAGGATCCTTGGAGCT | 58.505 | 55.000 | 13.00 | 4.91 | 0.00 | 4.09 |
2922 | 3761 | 0.467804 | GGAGACAGGATCCTTGGAGC | 59.532 | 60.000 | 13.00 | 0.48 | 33.77 | 4.70 |
2923 | 3762 | 1.484240 | GTGGAGACAGGATCCTTGGAG | 59.516 | 57.143 | 13.00 | 2.98 | 44.46 | 3.86 |
2924 | 3763 | 1.573108 | GTGGAGACAGGATCCTTGGA | 58.427 | 55.000 | 13.00 | 0.00 | 44.46 | 3.53 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.