Multiple sequence alignment - TraesCS2A01G328500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G328500 chr2A 100.000 2732 0 0 1 2732 560682236 560679505 0.000000e+00 5046.0
1 TraesCS2A01G328500 chr2A 82.576 132 13 8 1792 1923 560680313 560680192 1.030000e-19 108.0
2 TraesCS2A01G328500 chr2A 82.576 132 13 8 1924 2045 560680445 560680314 1.030000e-19 108.0
3 TraesCS2A01G328500 chr2A 93.443 61 3 1 1769 1828 560680266 560680206 3.750000e-14 89.8
4 TraesCS2A01G328500 chr2A 93.443 61 3 1 1971 2031 560680468 560680409 3.750000e-14 89.8
5 TraesCS2A01G328500 chr2D 91.056 1487 34 24 797 2233 427615558 427616995 0.000000e+00 1917.0
6 TraesCS2A01G328500 chr2D 94.531 512 26 2 2222 2732 427617387 427617897 0.000000e+00 789.0
7 TraesCS2A01G328500 chr2D 84.498 329 45 5 474 800 578922906 578922582 1.220000e-83 320.0
8 TraesCS2A01G328500 chr2D 94.505 91 4 1 1 91 255382239 255382328 3.670000e-29 139.0
9 TraesCS2A01G328500 chr2D 83.969 131 11 8 1924 2044 427616564 427616694 1.720000e-22 117.0
10 TraesCS2A01G328500 chr2D 88.608 79 5 2 1766 1844 427616712 427616786 2.900000e-15 93.5
11 TraesCS2A01G328500 chr2D 96.154 52 2 0 1994 2045 427616592 427616643 4.850000e-13 86.1
12 TraesCS2A01G328500 chr2D 100.000 31 0 0 1807 1837 427616707 427616737 1.060000e-04 58.4
13 TraesCS2A01G328500 chr2B 88.979 1107 53 18 797 1871 504488795 504489864 0.000000e+00 1304.0
14 TraesCS2A01G328500 chr2B 89.550 823 41 16 1955 2732 504489753 504490575 0.000000e+00 1002.0
15 TraesCS2A01G328500 chr2B 85.455 330 43 5 479 806 715925511 715925185 3.370000e-89 339.0
16 TraesCS2A01G328500 chr2B 81.527 406 39 11 87 479 504488416 504488798 4.420000e-78 302.0
17 TraesCS2A01G328500 chr2B 96.774 31 1 0 1807 1837 504489761 504489791 5.000000e-03 52.8
18 TraesCS2A01G328500 chr5D 87.500 304 33 5 479 779 545144528 545144227 2.010000e-91 346.0
19 TraesCS2A01G328500 chr5D 91.837 98 8 0 1 98 280405643 280405546 1.320000e-28 137.0
20 TraesCS2A01G328500 chr6D 85.075 335 45 5 471 801 454925115 454925448 1.210000e-88 337.0
21 TraesCS2A01G328500 chr3A 85.231 325 45 3 479 801 251325610 251325287 5.640000e-87 331.0
22 TraesCS2A01G328500 chr3B 84.320 338 46 6 468 801 279652677 279652343 9.440000e-85 324.0
23 TraesCS2A01G328500 chr5B 84.000 325 50 2 479 802 81787764 81787441 7.350000e-81 311.0
24 TraesCS2A01G328500 chr5B 92.784 97 7 0 1 97 569300565 569300469 1.020000e-29 141.0
25 TraesCS2A01G328500 chr5B 91.753 97 8 0 1 97 569202095 569201999 4.750000e-28 135.0
26 TraesCS2A01G328500 chr1D 83.735 332 50 4 476 804 286646870 286646540 7.350000e-81 311.0
27 TraesCS2A01G328500 chr6A 83.587 329 48 4 477 800 610391966 610392293 1.230000e-78 303.0
28 TraesCS2A01G328500 chr5A 95.506 89 4 0 1 89 642527630 642527718 2.840000e-30 143.0
29 TraesCS2A01G328500 chr4D 92.784 97 7 0 1 97 125412702 125412606 1.020000e-29 141.0
30 TraesCS2A01G328500 chr4D 93.478 92 6 0 1 92 358582969 358583060 1.320000e-28 137.0
31 TraesCS2A01G328500 chr7A 91.753 97 8 0 1 97 508654470 508654374 4.750000e-28 135.0
32 TraesCS2A01G328500 chr7D 90.909 99 9 0 2 100 409154966 409155064 1.710000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G328500 chr2A 560679505 560682236 2731 True 1088.320000 5046 90.407600 1 2732 5 chr2A.!!$R1 2731
1 TraesCS2A01G328500 chr2D 427615558 427617897 2339 False 510.166667 1917 92.386333 797 2732 6 chr2D.!!$F2 1935
2 TraesCS2A01G328500 chr2B 504488416 504490575 2159 False 665.200000 1304 89.207500 87 2732 4 chr2B.!!$F1 2645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 885 0.035056 ACAATCCTTCCGCTTCCCAG 60.035 55.000 0.00 0.0 0.0 4.45 F
1184 1221 1.765314 CCTCCCAAACCTCGAGATCAT 59.235 52.381 15.71 0.0 0.0 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 1776 0.248377 CGTGCTACGGTGCTACTACC 60.248 60.0 3.74 0.0 38.08 3.18 R
2317 2801 0.326618 TTAGAAGCAGAGGGGGAGGG 60.327 60.0 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.804167 CACGCTCTCCTCGCTCAT 59.196 61.111 0.00 0.00 0.00 2.90
18 19 1.140589 CACGCTCTCCTCGCTCATT 59.859 57.895 0.00 0.00 0.00 2.57
19 20 1.140589 ACGCTCTCCTCGCTCATTG 59.859 57.895 0.00 0.00 0.00 2.82
20 21 2.236382 CGCTCTCCTCGCTCATTGC 61.236 63.158 0.00 0.00 38.57 3.56
21 22 1.143620 GCTCTCCTCGCTCATTGCT 59.856 57.895 0.00 0.00 40.11 3.91
22 23 0.387202 GCTCTCCTCGCTCATTGCTA 59.613 55.000 0.00 0.00 40.11 3.49
23 24 1.000731 GCTCTCCTCGCTCATTGCTAT 59.999 52.381 0.00 0.00 40.11 2.97
24 25 2.674954 CTCTCCTCGCTCATTGCTATG 58.325 52.381 1.30 1.30 40.11 2.23
25 26 1.146637 CTCCTCGCTCATTGCTATGC 58.853 55.000 3.00 0.00 40.11 3.14
26 27 0.755079 TCCTCGCTCATTGCTATGCT 59.245 50.000 3.00 0.00 40.11 3.79
27 28 1.139654 TCCTCGCTCATTGCTATGCTT 59.860 47.619 3.00 0.00 40.11 3.91
28 29 1.530293 CCTCGCTCATTGCTATGCTTC 59.470 52.381 3.00 0.00 40.11 3.86
29 30 2.481854 CTCGCTCATTGCTATGCTTCT 58.518 47.619 3.00 0.00 40.11 2.85
30 31 2.475864 CTCGCTCATTGCTATGCTTCTC 59.524 50.000 3.00 0.00 40.11 2.87
31 32 1.530293 CGCTCATTGCTATGCTTCTCC 59.470 52.381 3.00 0.00 40.11 3.71
32 33 2.806019 CGCTCATTGCTATGCTTCTCCT 60.806 50.000 3.00 0.00 40.11 3.69
33 34 3.553715 CGCTCATTGCTATGCTTCTCCTA 60.554 47.826 3.00 0.00 40.11 2.94
34 35 3.995705 GCTCATTGCTATGCTTCTCCTAG 59.004 47.826 3.00 0.00 38.95 3.02
35 36 4.262377 GCTCATTGCTATGCTTCTCCTAGA 60.262 45.833 3.00 0.00 38.95 2.43
36 37 5.569227 GCTCATTGCTATGCTTCTCCTAGAT 60.569 44.000 3.00 0.00 38.95 1.98
37 38 6.350864 GCTCATTGCTATGCTTCTCCTAGATA 60.351 42.308 3.00 0.00 38.95 1.98
38 39 7.167924 TCATTGCTATGCTTCTCCTAGATAG 57.832 40.000 3.00 0.00 0.00 2.08
39 40 6.950619 TCATTGCTATGCTTCTCCTAGATAGA 59.049 38.462 3.00 0.00 0.00 1.98
40 41 7.618907 TCATTGCTATGCTTCTCCTAGATAGAT 59.381 37.037 3.00 0.00 0.00 1.98
41 42 7.403312 TTGCTATGCTTCTCCTAGATAGATC 57.597 40.000 0.00 0.00 0.00 2.75
42 43 6.730447 TGCTATGCTTCTCCTAGATAGATCT 58.270 40.000 0.00 0.00 40.86 2.75
43 44 7.181361 TGCTATGCTTCTCCTAGATAGATCTT 58.819 38.462 0.00 0.00 38.32 2.40
44 45 7.122501 TGCTATGCTTCTCCTAGATAGATCTTG 59.877 40.741 0.00 0.00 38.32 3.02
45 46 5.720371 TGCTTCTCCTAGATAGATCTTGC 57.280 43.478 0.00 0.00 38.32 4.01
46 47 4.217334 TGCTTCTCCTAGATAGATCTTGCG 59.783 45.833 0.00 0.00 38.32 4.85
47 48 4.217550 GCTTCTCCTAGATAGATCTTGCGT 59.782 45.833 0.00 0.00 38.32 5.24
48 49 5.697473 TTCTCCTAGATAGATCTTGCGTG 57.303 43.478 0.00 0.00 38.32 5.34
49 50 4.974399 TCTCCTAGATAGATCTTGCGTGA 58.026 43.478 0.00 0.00 38.32 4.35
50 51 5.565509 TCTCCTAGATAGATCTTGCGTGAT 58.434 41.667 0.00 0.00 38.32 3.06
51 52 5.645929 TCTCCTAGATAGATCTTGCGTGATC 59.354 44.000 0.00 9.82 42.18 2.92
52 53 4.393371 TCCTAGATAGATCTTGCGTGATCG 59.607 45.833 0.00 0.00 45.35 3.69
53 54 4.155099 CCTAGATAGATCTTGCGTGATCGT 59.845 45.833 0.00 6.35 45.35 3.73
54 55 5.351740 CCTAGATAGATCTTGCGTGATCGTA 59.648 44.000 0.00 6.70 45.35 3.43
55 56 5.888691 AGATAGATCTTGCGTGATCGTAT 57.111 39.130 0.00 9.90 45.35 3.06
56 57 5.635866 AGATAGATCTTGCGTGATCGTATG 58.364 41.667 0.00 0.00 45.35 2.39
57 58 3.990318 AGATCTTGCGTGATCGTATGA 57.010 42.857 11.44 0.00 45.35 2.15
58 59 4.511617 AGATCTTGCGTGATCGTATGAT 57.488 40.909 11.44 0.00 45.35 2.45
59 60 4.876125 AGATCTTGCGTGATCGTATGATT 58.124 39.130 11.44 0.00 45.35 2.57
60 61 5.292765 AGATCTTGCGTGATCGTATGATTT 58.707 37.500 11.44 1.99 45.35 2.17
61 62 5.755375 AGATCTTGCGTGATCGTATGATTTT 59.245 36.000 11.44 0.63 45.35 1.82
62 63 5.794687 TCTTGCGTGATCGTATGATTTTT 57.205 34.783 0.00 0.00 39.49 1.94
93 94 5.806654 ACTACGTTCCCTAACACCTTTAA 57.193 39.130 0.00 0.00 35.16 1.52
99 100 2.376181 TCCCTAACACCTTTAACCACCC 59.624 50.000 0.00 0.00 0.00 4.61
100 101 2.429478 CCTAACACCTTTAACCACCCG 58.571 52.381 0.00 0.00 0.00 5.28
101 102 2.038820 CCTAACACCTTTAACCACCCGA 59.961 50.000 0.00 0.00 0.00 5.14
102 103 1.971481 AACACCTTTAACCACCCGAC 58.029 50.000 0.00 0.00 0.00 4.79
104 105 1.301953 ACCTTTAACCACCCGACGC 60.302 57.895 0.00 0.00 0.00 5.19
105 106 2.385091 CCTTTAACCACCCGACGCG 61.385 63.158 3.53 3.53 0.00 6.01
164 166 1.146263 GGGTCCCATCTGTAAGCCG 59.854 63.158 1.78 0.00 0.00 5.52
173 175 1.890876 TCTGTAAGCCGCATGTTGTT 58.109 45.000 0.00 0.00 0.00 2.83
176 178 2.979813 CTGTAAGCCGCATGTTGTTTTC 59.020 45.455 0.00 0.00 0.00 2.29
180 182 1.537202 AGCCGCATGTTGTTTTCTCTC 59.463 47.619 0.00 0.00 0.00 3.20
181 183 1.537202 GCCGCATGTTGTTTTCTCTCT 59.463 47.619 0.00 0.00 0.00 3.10
182 184 2.030805 GCCGCATGTTGTTTTCTCTCTT 60.031 45.455 0.00 0.00 0.00 2.85
183 185 3.550842 GCCGCATGTTGTTTTCTCTCTTT 60.551 43.478 0.00 0.00 0.00 2.52
184 186 4.610945 CCGCATGTTGTTTTCTCTCTTTT 58.389 39.130 0.00 0.00 0.00 2.27
220 222 2.505819 GGGTCTCACATGTAAGGATGGT 59.494 50.000 0.00 0.00 0.00 3.55
224 226 5.245531 GTCTCACATGTAAGGATGGTCAAA 58.754 41.667 0.00 0.00 0.00 2.69
226 228 5.705441 TCTCACATGTAAGGATGGTCAAAAC 59.295 40.000 0.00 0.00 0.00 2.43
228 230 6.774673 TCACATGTAAGGATGGTCAAAACTA 58.225 36.000 0.00 0.00 0.00 2.24
241 243 8.697507 ATGGTCAAAACTATCCTGGAAATATC 57.302 34.615 0.00 0.00 0.00 1.63
242 244 7.638444 TGGTCAAAACTATCCTGGAAATATCA 58.362 34.615 0.00 0.00 0.00 2.15
249 251 7.579940 ACTATCCTGGAAATATCACCATGAT 57.420 36.000 16.60 16.60 41.67 2.45
289 302 2.806244 AGACGGAAGCACATTTGTACAC 59.194 45.455 0.00 0.00 0.00 2.90
295 308 2.875296 AGCACATTTGTACACCACCAT 58.125 42.857 0.00 0.00 0.00 3.55
300 313 5.782047 CACATTTGTACACCACCATCAAAT 58.218 37.500 0.00 0.00 38.63 2.32
330 343 2.096218 GGCAAACTGAGCACGACTAAAG 60.096 50.000 0.00 0.00 0.00 1.85
336 350 3.825014 ACTGAGCACGACTAAAGTTAGGA 59.175 43.478 3.26 0.00 35.08 2.94
345 359 7.360607 GCACGACTAAAGTTAGGAGCAAATTTA 60.361 37.037 3.26 0.00 35.08 1.40
385 399 9.461734 AGTTAGGGGTAGAAATGTAAATATCCT 57.538 33.333 0.00 0.00 0.00 3.24
409 423 8.522830 CCTTTATTTTTGTGATCATACTGTGGT 58.477 33.333 0.00 0.00 0.00 4.16
454 468 2.625790 CACTACTAGGACTGGGAGCATC 59.374 54.545 0.00 0.00 0.00 3.91
475 489 7.928706 AGCATCATTGGAAGACATTAGTACTAC 59.071 37.037 0.91 0.00 0.00 2.73
476 490 7.928706 GCATCATTGGAAGACATTAGTACTACT 59.071 37.037 0.91 0.00 0.00 2.57
482 496 8.223177 TGGAAGACATTAGTACTACTAAGAGC 57.777 38.462 13.02 5.98 43.17 4.09
483 497 7.832685 TGGAAGACATTAGTACTACTAAGAGCA 59.167 37.037 13.02 0.00 43.17 4.26
484 498 8.852135 GGAAGACATTAGTACTACTAAGAGCAT 58.148 37.037 13.02 1.96 43.17 3.79
485 499 9.887406 GAAGACATTAGTACTACTAAGAGCATC 57.113 37.037 13.02 6.51 43.17 3.91
497 511 1.427020 GAGCATCTTCAACAGGCGC 59.573 57.895 0.00 0.00 0.00 6.53
498 512 1.300971 GAGCATCTTCAACAGGCGCA 61.301 55.000 10.83 0.00 0.00 6.09
499 513 1.154150 GCATCTTCAACAGGCGCAC 60.154 57.895 10.83 0.00 0.00 5.34
500 514 1.855213 GCATCTTCAACAGGCGCACA 61.855 55.000 10.83 0.00 0.00 4.57
501 515 0.592637 CATCTTCAACAGGCGCACAA 59.407 50.000 10.83 0.00 0.00 3.33
502 516 1.001487 CATCTTCAACAGGCGCACAAA 60.001 47.619 10.83 0.00 0.00 2.83
503 517 1.098869 TCTTCAACAGGCGCACAAAA 58.901 45.000 10.83 0.00 0.00 2.44
504 518 1.065401 TCTTCAACAGGCGCACAAAAG 59.935 47.619 10.83 4.95 0.00 2.27
505 519 0.814457 TTCAACAGGCGCACAAAAGT 59.186 45.000 10.83 0.00 0.00 2.66
506 520 0.814457 TCAACAGGCGCACAAAAGTT 59.186 45.000 10.83 0.91 0.00 2.66
507 521 1.203523 TCAACAGGCGCACAAAAGTTT 59.796 42.857 10.83 0.00 0.00 2.66
508 522 1.587946 CAACAGGCGCACAAAAGTTTC 59.412 47.619 10.83 0.00 0.00 2.78
509 523 0.814457 ACAGGCGCACAAAAGTTTCA 59.186 45.000 10.83 0.00 0.00 2.69
510 524 1.199624 CAGGCGCACAAAAGTTTCAC 58.800 50.000 10.83 0.00 0.00 3.18
511 525 0.248458 AGGCGCACAAAAGTTTCACG 60.248 50.000 10.83 0.00 0.00 4.35
512 526 1.553185 GCGCACAAAAGTTTCACGC 59.447 52.632 0.30 8.19 37.93 5.34
513 527 1.830338 CGCACAAAAGTTTCACGCG 59.170 52.632 3.53 3.53 34.89 6.01
514 528 1.528248 CGCACAAAAGTTTCACGCGG 61.528 55.000 12.47 0.00 37.72 6.46
515 529 0.524604 GCACAAAAGTTTCACGCGGT 60.525 50.000 12.47 0.00 0.00 5.68
516 530 1.268133 GCACAAAAGTTTCACGCGGTA 60.268 47.619 12.47 0.00 0.00 4.02
517 531 2.791849 GCACAAAAGTTTCACGCGGTAA 60.792 45.455 12.47 0.10 0.00 2.85
518 532 3.427243 CACAAAAGTTTCACGCGGTAAA 58.573 40.909 12.47 7.62 0.00 2.01
519 533 3.852536 CACAAAAGTTTCACGCGGTAAAA 59.147 39.130 12.47 4.79 0.00 1.52
520 534 4.501198 CACAAAAGTTTCACGCGGTAAAAT 59.499 37.500 12.47 6.82 0.00 1.82
521 535 5.681982 CACAAAAGTTTCACGCGGTAAAATA 59.318 36.000 12.47 0.00 0.00 1.40
522 536 5.682422 ACAAAAGTTTCACGCGGTAAAATAC 59.318 36.000 12.47 0.00 0.00 1.89
523 537 5.678132 AAAGTTTCACGCGGTAAAATACT 57.322 34.783 12.47 1.93 0.00 2.12
524 538 5.678132 AAGTTTCACGCGGTAAAATACTT 57.322 34.783 12.47 8.09 0.00 2.24
525 539 5.678132 AGTTTCACGCGGTAAAATACTTT 57.322 34.783 12.47 0.00 0.00 2.66
526 540 6.063640 AGTTTCACGCGGTAAAATACTTTT 57.936 33.333 12.47 0.00 36.67 2.27
527 541 7.188468 AGTTTCACGCGGTAAAATACTTTTA 57.812 32.000 12.47 0.00 34.19 1.52
528 542 7.293018 AGTTTCACGCGGTAAAATACTTTTAG 58.707 34.615 12.47 0.00 35.91 1.85
529 543 6.783892 TTCACGCGGTAAAATACTTTTAGT 57.216 33.333 12.47 0.00 35.91 2.24
530 544 6.155691 TCACGCGGTAAAATACTTTTAGTG 57.844 37.500 12.47 0.00 35.91 2.74
531 545 4.784550 CACGCGGTAAAATACTTTTAGTGC 59.215 41.667 12.47 6.02 35.91 4.40
532 546 4.017271 CGCGGTAAAATACTTTTAGTGCG 58.983 43.478 16.66 16.66 45.12 5.34
533 547 3.782369 GCGGTAAAATACTTTTAGTGCGC 59.218 43.478 0.00 0.00 35.91 6.09
534 548 4.336932 CGGTAAAATACTTTTAGTGCGCC 58.663 43.478 4.18 0.00 35.91 6.53
535 549 4.142859 CGGTAAAATACTTTTAGTGCGCCA 60.143 41.667 4.18 0.00 35.91 5.69
536 550 5.448089 CGGTAAAATACTTTTAGTGCGCCAT 60.448 40.000 4.18 0.00 35.91 4.40
537 551 6.327154 GGTAAAATACTTTTAGTGCGCCATT 58.673 36.000 4.18 0.00 35.91 3.16
538 552 6.252655 GGTAAAATACTTTTAGTGCGCCATTG 59.747 38.462 4.18 0.00 35.91 2.82
539 553 5.385509 AAATACTTTTAGTGCGCCATTGT 57.614 34.783 4.18 0.00 0.00 2.71
540 554 6.503589 AAATACTTTTAGTGCGCCATTGTA 57.496 33.333 4.18 0.00 0.00 2.41
541 555 5.734855 ATACTTTTAGTGCGCCATTGTAG 57.265 39.130 4.18 0.00 0.00 2.74
542 556 2.161609 ACTTTTAGTGCGCCATTGTAGC 59.838 45.455 4.18 0.00 0.00 3.58
543 557 1.814793 TTTAGTGCGCCATTGTAGCA 58.185 45.000 4.18 0.00 38.71 3.49
546 560 4.395519 TGCGCCATTGTAGCACTT 57.604 50.000 4.18 0.00 35.81 3.16
547 561 2.639970 TGCGCCATTGTAGCACTTT 58.360 47.368 4.18 0.00 35.81 2.66
548 562 0.958091 TGCGCCATTGTAGCACTTTT 59.042 45.000 4.18 0.00 35.81 2.27
549 563 2.155279 TGCGCCATTGTAGCACTTTTA 58.845 42.857 4.18 0.00 35.81 1.52
550 564 2.161410 TGCGCCATTGTAGCACTTTTAG 59.839 45.455 4.18 0.00 35.81 1.85
551 565 2.785679 CGCCATTGTAGCACTTTTAGC 58.214 47.619 0.00 0.00 0.00 3.09
552 566 2.161410 CGCCATTGTAGCACTTTTAGCA 59.839 45.455 0.00 0.00 0.00 3.49
553 567 3.501950 GCCATTGTAGCACTTTTAGCAC 58.498 45.455 0.00 0.00 0.00 4.40
554 568 3.747193 CCATTGTAGCACTTTTAGCACG 58.253 45.455 0.00 0.00 0.00 5.34
555 569 2.961522 TTGTAGCACTTTTAGCACGC 57.038 45.000 0.00 0.00 0.00 5.34
556 570 1.153353 TGTAGCACTTTTAGCACGCC 58.847 50.000 0.00 0.00 0.00 5.68
557 571 0.094730 GTAGCACTTTTAGCACGCCG 59.905 55.000 0.00 0.00 0.00 6.46
558 572 0.038067 TAGCACTTTTAGCACGCCGA 60.038 50.000 0.00 0.00 0.00 5.54
559 573 0.882927 AGCACTTTTAGCACGCCGAA 60.883 50.000 0.00 0.00 0.00 4.30
560 574 0.168128 GCACTTTTAGCACGCCGAAT 59.832 50.000 0.00 0.00 0.00 3.34
561 575 1.790481 GCACTTTTAGCACGCCGAATC 60.790 52.381 0.00 0.00 0.00 2.52
562 576 1.084289 ACTTTTAGCACGCCGAATCC 58.916 50.000 0.00 0.00 0.00 3.01
563 577 1.083489 CTTTTAGCACGCCGAATCCA 58.917 50.000 0.00 0.00 0.00 3.41
564 578 1.466950 CTTTTAGCACGCCGAATCCAA 59.533 47.619 0.00 0.00 0.00 3.53
565 579 0.800012 TTTAGCACGCCGAATCCAAC 59.200 50.000 0.00 0.00 0.00 3.77
566 580 0.320858 TTAGCACGCCGAATCCAACA 60.321 50.000 0.00 0.00 0.00 3.33
567 581 0.107897 TAGCACGCCGAATCCAACAT 60.108 50.000 0.00 0.00 0.00 2.71
568 582 0.960364 AGCACGCCGAATCCAACATT 60.960 50.000 0.00 0.00 0.00 2.71
569 583 0.798009 GCACGCCGAATCCAACATTG 60.798 55.000 0.00 0.00 0.00 2.82
582 596 4.666928 CCAACATTGGTTTAGCAAATGC 57.333 40.909 2.22 0.00 41.22 3.56
583 597 3.436359 CCAACATTGGTTTAGCAAATGCC 59.564 43.478 0.94 0.00 41.22 4.40
584 598 3.333029 ACATTGGTTTAGCAAATGCCC 57.667 42.857 0.94 0.00 41.22 5.36
585 599 2.636893 ACATTGGTTTAGCAAATGCCCA 59.363 40.909 0.94 0.00 41.22 5.36
586 600 3.072184 ACATTGGTTTAGCAAATGCCCAA 59.928 39.130 13.68 13.68 41.22 4.12
587 601 3.845781 TTGGTTTAGCAAATGCCCAAA 57.154 38.095 10.23 5.37 43.38 3.28
588 602 3.845781 TGGTTTAGCAAATGCCCAAAA 57.154 38.095 0.94 0.00 43.38 2.44
589 603 4.156455 TGGTTTAGCAAATGCCCAAAAA 57.844 36.364 0.94 0.00 43.38 1.94
590 604 3.879892 TGGTTTAGCAAATGCCCAAAAAC 59.120 39.130 0.94 7.93 43.38 2.43
591 605 3.879892 GGTTTAGCAAATGCCCAAAAACA 59.120 39.130 17.37 0.00 43.38 2.83
592 606 4.260990 GGTTTAGCAAATGCCCAAAAACAC 60.261 41.667 17.37 8.94 43.38 3.32
593 607 1.580815 AGCAAATGCCCAAAAACACG 58.419 45.000 0.94 0.00 43.38 4.49
594 608 0.041400 GCAAATGCCCAAAAACACGC 60.041 50.000 0.00 0.00 34.31 5.34
595 609 0.231790 CAAATGCCCAAAAACACGCG 59.768 50.000 3.53 3.53 0.00 6.01
596 610 0.179097 AAATGCCCAAAAACACGCGT 60.179 45.000 5.58 5.58 0.00 6.01
597 611 0.596341 AATGCCCAAAAACACGCGTC 60.596 50.000 9.86 0.00 0.00 5.19
598 612 2.354188 GCCCAAAAACACGCGTCC 60.354 61.111 9.86 0.00 0.00 4.79
599 613 3.111939 CCCAAAAACACGCGTCCA 58.888 55.556 9.86 0.00 0.00 4.02
600 614 1.433879 CCCAAAAACACGCGTCCAA 59.566 52.632 9.86 0.00 0.00 3.53
601 615 0.179134 CCCAAAAACACGCGTCCAAA 60.179 50.000 9.86 0.00 0.00 3.28
602 616 1.630148 CCAAAAACACGCGTCCAAAA 58.370 45.000 9.86 0.00 0.00 2.44
603 617 1.993370 CCAAAAACACGCGTCCAAAAA 59.007 42.857 9.86 0.00 0.00 1.94
626 640 9.762933 AAAAACACATAGTGCAAATTATGAAGT 57.237 25.926 16.60 12.48 36.98 3.01
627 641 8.746922 AAACACATAGTGCAAATTATGAAGTG 57.253 30.769 16.60 9.70 36.98 3.16
628 642 6.324819 ACACATAGTGCAAATTATGAAGTGC 58.675 36.000 16.60 0.00 36.98 4.40
629 643 5.453266 CACATAGTGCAAATTATGAAGTGCG 59.547 40.000 16.60 0.00 39.92 5.34
630 644 2.867429 AGTGCAAATTATGAAGTGCGC 58.133 42.857 0.00 0.00 45.56 6.09
631 645 1.578915 GTGCAAATTATGAAGTGCGCG 59.421 47.619 0.00 0.00 39.92 6.86
632 646 1.198867 TGCAAATTATGAAGTGCGCGT 59.801 42.857 8.43 0.00 39.92 6.01
633 647 2.416893 TGCAAATTATGAAGTGCGCGTA 59.583 40.909 8.43 0.00 39.92 4.42
634 648 3.120165 TGCAAATTATGAAGTGCGCGTAA 60.120 39.130 8.43 0.00 39.92 3.18
635 649 4.035017 GCAAATTATGAAGTGCGCGTAAT 58.965 39.130 8.43 0.00 0.00 1.89
636 650 4.144731 GCAAATTATGAAGTGCGCGTAATC 59.855 41.667 8.43 6.12 29.63 1.75
637 651 4.468095 AATTATGAAGTGCGCGTAATCC 57.532 40.909 8.43 0.00 29.63 3.01
638 652 1.483316 TATGAAGTGCGCGTAATCCG 58.517 50.000 8.43 0.00 40.40 4.18
639 653 1.151777 ATGAAGTGCGCGTAATCCGG 61.152 55.000 8.43 0.00 36.94 5.14
640 654 3.151673 GAAGTGCGCGTAATCCGGC 62.152 63.158 8.43 0.00 36.94 6.13
647 661 4.841861 CGTAATCCGGCGCCCCAA 62.842 66.667 23.46 6.70 0.00 4.12
648 662 2.438795 GTAATCCGGCGCCCCAAA 60.439 61.111 23.46 3.69 0.00 3.28
649 663 1.826487 GTAATCCGGCGCCCCAAAT 60.826 57.895 23.46 6.25 0.00 2.32
650 664 1.076632 TAATCCGGCGCCCCAAATT 60.077 52.632 23.46 16.86 0.00 1.82
651 665 0.684805 TAATCCGGCGCCCCAAATTT 60.685 50.000 23.46 8.79 0.00 1.82
652 666 2.237534 AATCCGGCGCCCCAAATTTG 62.238 55.000 23.46 11.40 0.00 2.32
654 668 4.370066 CGGCGCCCCAAATTTGCA 62.370 61.111 23.46 0.00 0.00 4.08
655 669 2.434709 GGCGCCCCAAATTTGCAG 60.435 61.111 18.11 6.96 0.00 4.41
656 670 3.120385 GCGCCCCAAATTTGCAGC 61.120 61.111 12.92 15.06 0.00 5.25
657 671 2.658422 CGCCCCAAATTTGCAGCT 59.342 55.556 21.24 0.00 0.00 4.24
658 672 1.004679 CGCCCCAAATTTGCAGCTT 60.005 52.632 21.24 0.00 0.00 3.74
659 673 1.015607 CGCCCCAAATTTGCAGCTTC 61.016 55.000 21.24 5.52 0.00 3.86
660 674 0.322648 GCCCCAAATTTGCAGCTTCT 59.677 50.000 12.92 0.00 0.00 2.85
661 675 1.942586 GCCCCAAATTTGCAGCTTCTG 60.943 52.381 12.92 0.00 34.12 3.02
662 676 1.619827 CCCCAAATTTGCAGCTTCTGA 59.380 47.619 12.92 0.00 32.44 3.27
663 677 2.235402 CCCCAAATTTGCAGCTTCTGAT 59.765 45.455 12.92 0.00 32.44 2.90
664 678 3.448301 CCCCAAATTTGCAGCTTCTGATA 59.552 43.478 12.92 0.00 32.44 2.15
665 679 4.441079 CCCCAAATTTGCAGCTTCTGATAG 60.441 45.833 12.92 0.00 32.44 2.08
666 680 4.110482 CCAAATTTGCAGCTTCTGATAGC 58.890 43.478 12.92 4.38 41.53 2.97
667 681 3.687572 AATTTGCAGCTTCTGATAGCG 57.312 42.857 0.00 0.00 45.82 4.26
668 682 0.729116 TTTGCAGCTTCTGATAGCGC 59.271 50.000 0.00 0.00 45.82 5.92
669 683 0.107993 TTGCAGCTTCTGATAGCGCT 60.108 50.000 17.26 17.26 45.82 5.92
670 684 0.107993 TGCAGCTTCTGATAGCGCTT 60.108 50.000 18.68 2.89 45.82 4.68
671 685 1.012841 GCAGCTTCTGATAGCGCTTT 58.987 50.000 18.68 8.03 45.82 3.51
672 686 1.399791 GCAGCTTCTGATAGCGCTTTT 59.600 47.619 18.68 3.01 45.82 2.27
673 687 2.159462 GCAGCTTCTGATAGCGCTTTTT 60.159 45.455 18.68 0.00 45.82 1.94
674 688 3.063997 GCAGCTTCTGATAGCGCTTTTTA 59.936 43.478 18.68 0.00 45.82 1.52
675 689 4.437390 GCAGCTTCTGATAGCGCTTTTTAA 60.437 41.667 18.68 0.00 45.82 1.52
676 690 5.024555 CAGCTTCTGATAGCGCTTTTTAAC 58.975 41.667 18.68 0.00 45.82 2.01
677 691 4.022475 GCTTCTGATAGCGCTTTTTAACG 58.978 43.478 18.68 0.92 0.00 3.18
683 697 3.432666 CGCTTTTTAACGCGTGCC 58.567 55.556 14.98 0.00 44.01 5.01
684 698 2.078341 CGCTTTTTAACGCGTGCCC 61.078 57.895 14.98 0.00 44.01 5.36
685 699 1.008309 GCTTTTTAACGCGTGCCCA 60.008 52.632 14.98 0.00 0.00 5.36
686 700 0.595310 GCTTTTTAACGCGTGCCCAA 60.595 50.000 14.98 3.02 0.00 4.12
687 701 1.841450 CTTTTTAACGCGTGCCCAAA 58.159 45.000 14.98 8.51 0.00 3.28
688 702 1.519343 CTTTTTAACGCGTGCCCAAAC 59.481 47.619 14.98 0.00 0.00 2.93
689 703 0.739561 TTTTAACGCGTGCCCAAACT 59.260 45.000 14.98 0.00 0.00 2.66
690 704 0.739561 TTTAACGCGTGCCCAAACTT 59.260 45.000 14.98 0.00 0.00 2.66
691 705 0.739561 TTAACGCGTGCCCAAACTTT 59.260 45.000 14.98 0.00 0.00 2.66
692 706 0.739561 TAACGCGTGCCCAAACTTTT 59.260 45.000 14.98 0.00 0.00 2.27
693 707 0.108567 AACGCGTGCCCAAACTTTTT 60.109 45.000 14.98 0.00 0.00 1.94
717 731 4.795970 GCGTGTGCACTATTTTATAGCT 57.204 40.909 19.41 0.00 42.15 3.32
718 732 5.156804 GCGTGTGCACTATTTTATAGCTT 57.843 39.130 19.41 0.00 42.15 3.74
719 733 5.198274 GCGTGTGCACTATTTTATAGCTTC 58.802 41.667 19.41 0.00 42.15 3.86
720 734 5.006746 GCGTGTGCACTATTTTATAGCTTCT 59.993 40.000 19.41 0.00 42.15 2.85
721 735 6.200286 GCGTGTGCACTATTTTATAGCTTCTA 59.800 38.462 19.41 0.00 42.15 2.10
722 736 7.095607 GCGTGTGCACTATTTTATAGCTTCTAT 60.096 37.037 19.41 0.00 42.15 1.98
723 737 8.765219 CGTGTGCACTATTTTATAGCTTCTATT 58.235 33.333 19.41 0.00 0.00 1.73
724 738 9.869844 GTGTGCACTATTTTATAGCTTCTATTG 57.130 33.333 19.41 0.00 0.00 1.90
725 739 9.830975 TGTGCACTATTTTATAGCTTCTATTGA 57.169 29.630 19.41 0.00 0.00 2.57
737 751 2.299993 TCTATTGAAGCTGTCCTGCG 57.700 50.000 0.00 0.00 38.13 5.18
738 752 1.550524 TCTATTGAAGCTGTCCTGCGT 59.449 47.619 0.00 0.00 38.13 5.24
739 753 1.929836 CTATTGAAGCTGTCCTGCGTC 59.070 52.381 0.00 5.42 40.81 5.19
740 754 0.035317 ATTGAAGCTGTCCTGCGTCA 59.965 50.000 9.87 9.87 46.31 4.35
741 755 1.445518 TGAAGCTGTCCTGCGTCAA 59.554 52.632 11.14 0.00 45.37 3.18
742 756 0.179059 TGAAGCTGTCCTGCGTCAAA 60.179 50.000 11.14 0.00 45.37 2.69
743 757 0.944386 GAAGCTGTCCTGCGTCAAAA 59.056 50.000 7.10 0.00 40.29 2.44
744 758 1.333619 GAAGCTGTCCTGCGTCAAAAA 59.666 47.619 7.10 0.00 40.29 1.94
763 777 5.876576 AAAAACCTGAATTTTTACGTCGC 57.123 34.783 0.00 0.00 39.43 5.19
764 778 2.867456 ACCTGAATTTTTACGTCGCG 57.133 45.000 0.00 0.00 0.00 5.87
765 779 1.461897 ACCTGAATTTTTACGTCGCGG 59.538 47.619 6.13 0.00 0.00 6.46
766 780 1.727880 CCTGAATTTTTACGTCGCGGA 59.272 47.619 6.13 0.00 0.00 5.54
767 781 2.222729 CCTGAATTTTTACGTCGCGGAG 60.223 50.000 6.13 2.73 0.00 4.63
781 795 3.845625 CGGAGCAGTTTTTGTGACC 57.154 52.632 0.00 0.00 0.00 4.02
782 796 0.310854 CGGAGCAGTTTTTGTGACCC 59.689 55.000 0.00 0.00 0.00 4.46
783 797 1.692411 GGAGCAGTTTTTGTGACCCT 58.308 50.000 0.00 0.00 0.00 4.34
784 798 1.338020 GGAGCAGTTTTTGTGACCCTG 59.662 52.381 0.00 0.00 0.00 4.45
785 799 2.024414 GAGCAGTTTTTGTGACCCTGT 58.976 47.619 0.00 0.00 0.00 4.00
786 800 2.427095 GAGCAGTTTTTGTGACCCTGTT 59.573 45.455 0.00 0.00 0.00 3.16
787 801 3.626930 AGCAGTTTTTGTGACCCTGTTA 58.373 40.909 0.00 0.00 0.00 2.41
788 802 3.632145 AGCAGTTTTTGTGACCCTGTTAG 59.368 43.478 0.00 0.00 0.00 2.34
789 803 3.630312 GCAGTTTTTGTGACCCTGTTAGA 59.370 43.478 0.00 0.00 0.00 2.10
790 804 4.261197 GCAGTTTTTGTGACCCTGTTAGAG 60.261 45.833 0.00 0.00 0.00 2.43
791 805 5.123227 CAGTTTTTGTGACCCTGTTAGAGA 58.877 41.667 0.00 0.00 0.00 3.10
792 806 5.765182 CAGTTTTTGTGACCCTGTTAGAGAT 59.235 40.000 0.00 0.00 0.00 2.75
793 807 5.765182 AGTTTTTGTGACCCTGTTAGAGATG 59.235 40.000 0.00 0.00 0.00 2.90
794 808 3.334583 TTGTGACCCTGTTAGAGATGC 57.665 47.619 0.00 0.00 0.00 3.91
795 809 2.540383 TGTGACCCTGTTAGAGATGCT 58.460 47.619 0.00 0.00 0.00 3.79
862 879 0.112412 ACCCAAACAATCCTTCCGCT 59.888 50.000 0.00 0.00 0.00 5.52
868 885 0.035056 ACAATCCTTCCGCTTCCCAG 60.035 55.000 0.00 0.00 0.00 4.45
929 964 3.621715 CCGAAAGCCCAGAGTACAAATAC 59.378 47.826 0.00 0.00 0.00 1.89
1141 1178 2.124983 TCGTCCGGACCTACCTCG 60.125 66.667 28.52 15.26 36.31 4.63
1184 1221 1.765314 CCTCCCAAACCTCGAGATCAT 59.235 52.381 15.71 0.00 0.00 2.45
1727 1776 2.805099 AGAAGAAGAAACAGAAGCTGCG 59.195 45.455 0.00 0.00 34.37 5.18
1731 1780 2.086054 AGAAACAGAAGCTGCGGTAG 57.914 50.000 0.00 0.00 34.37 3.18
1732 1781 1.344763 AGAAACAGAAGCTGCGGTAGT 59.655 47.619 0.00 0.00 34.37 2.73
1733 1782 2.561419 AGAAACAGAAGCTGCGGTAGTA 59.439 45.455 0.00 0.00 34.37 1.82
1734 1783 2.656560 AACAGAAGCTGCGGTAGTAG 57.343 50.000 0.00 0.00 34.37 2.57
1767 1816 0.955178 GAGGCGCTAGTAGATGCTGA 59.045 55.000 7.64 0.00 0.00 4.26
1844 1901 2.795329 TCTGAAGCCTGAATTTGGGTC 58.205 47.619 4.06 0.69 33.76 4.46
1884 1941 5.929697 TTGGATTAGCATTATCTGAAGCG 57.070 39.130 0.00 0.00 0.00 4.68
1885 1942 5.213891 TGGATTAGCATTATCTGAAGCGA 57.786 39.130 0.00 0.00 0.00 4.93
1917 1974 2.572191 ACATGATGCTGCGAATTTGG 57.428 45.000 0.00 0.00 0.00 3.28
1918 1975 1.135527 ACATGATGCTGCGAATTTGGG 59.864 47.619 0.00 0.00 0.00 4.12
1919 1976 1.135527 CATGATGCTGCGAATTTGGGT 59.864 47.619 0.00 0.00 0.00 4.51
1920 1977 1.255882 TGATGCTGCGAATTTGGGTT 58.744 45.000 0.00 0.00 0.00 4.11
1921 1978 2.441410 TGATGCTGCGAATTTGGGTTA 58.559 42.857 0.00 0.00 0.00 2.85
1922 1979 2.423185 TGATGCTGCGAATTTGGGTTAG 59.577 45.455 0.00 0.00 0.00 2.34
1923 1980 0.525761 TGCTGCGAATTTGGGTTAGC 59.474 50.000 0.00 0.00 0.00 3.09
1924 1981 0.525761 GCTGCGAATTTGGGTTAGCA 59.474 50.000 0.00 0.00 37.37 3.49
1925 1982 1.134946 GCTGCGAATTTGGGTTAGCAT 59.865 47.619 0.00 0.00 38.67 3.79
1926 1983 2.417243 GCTGCGAATTTGGGTTAGCATT 60.417 45.455 0.00 0.00 38.67 3.56
1927 1984 3.181491 GCTGCGAATTTGGGTTAGCATTA 60.181 43.478 0.00 0.00 38.67 1.90
1928 1985 4.499696 GCTGCGAATTTGGGTTAGCATTAT 60.500 41.667 0.00 0.00 38.67 1.28
1929 1986 5.181690 TGCGAATTTGGGTTAGCATTATC 57.818 39.130 0.00 0.00 35.30 1.75
1930 1987 4.887071 TGCGAATTTGGGTTAGCATTATCT 59.113 37.500 0.00 0.00 35.30 1.98
1931 1988 5.215160 GCGAATTTGGGTTAGCATTATCTG 58.785 41.667 0.00 0.00 31.19 2.90
1932 1989 5.008613 GCGAATTTGGGTTAGCATTATCTGA 59.991 40.000 0.00 0.00 31.19 3.27
1933 1990 6.459573 GCGAATTTGGGTTAGCATTATCTGAA 60.460 38.462 0.00 0.00 31.19 3.02
1934 1991 7.479980 CGAATTTGGGTTAGCATTATCTGAAA 58.520 34.615 0.00 0.00 0.00 2.69
1935 1992 7.432252 CGAATTTGGGTTAGCATTATCTGAAAC 59.568 37.037 0.00 0.00 0.00 2.78
1936 1993 6.524101 TTTGGGTTAGCATTATCTGAAACC 57.476 37.500 0.00 0.00 39.73 3.27
1937 1994 5.450818 TGGGTTAGCATTATCTGAAACCT 57.549 39.130 5.45 0.00 40.07 3.50
1938 1995 5.192927 TGGGTTAGCATTATCTGAAACCTG 58.807 41.667 5.45 0.00 40.07 4.00
1939 1996 5.045213 TGGGTTAGCATTATCTGAAACCTGA 60.045 40.000 5.45 0.00 40.07 3.86
1940 1997 5.885912 GGGTTAGCATTATCTGAAACCTGAA 59.114 40.000 5.45 0.00 40.07 3.02
1941 1998 6.547510 GGGTTAGCATTATCTGAAACCTGAAT 59.452 38.462 5.45 0.00 40.07 2.57
1942 1999 7.068716 GGGTTAGCATTATCTGAAACCTGAATT 59.931 37.037 5.45 0.00 40.07 2.17
1943 2000 8.470002 GGTTAGCATTATCTGAAACCTGAATTT 58.530 33.333 0.00 0.00 38.47 1.82
1944 2001 9.294030 GTTAGCATTATCTGAAACCTGAATTTG 57.706 33.333 0.00 0.00 0.00 2.32
1985 2042 4.518211 GGATTTGGGTTAGCATGATCTGAG 59.482 45.833 0.00 0.00 0.00 3.35
2025 2082 4.415596 AGCCTGAATTTGGGTTAACATGA 58.584 39.130 8.10 0.00 30.18 3.07
2047 2104 2.745281 TGCTGCGAATTTGGGTTAGTAC 59.255 45.455 0.00 0.00 0.00 2.73
2112 2169 5.277876 GCATGATCTGAAGCCTGAACATTAG 60.278 44.000 0.00 0.00 33.65 1.73
2170 2232 2.193536 GGCGAGCCAAACTGGTGTT 61.194 57.895 9.58 0.00 40.46 3.32
2176 2238 4.250464 CGAGCCAAACTGGTGTTAATCTA 58.750 43.478 0.00 0.00 40.46 1.98
2177 2239 4.092968 CGAGCCAAACTGGTGTTAATCTAC 59.907 45.833 0.00 0.00 40.46 2.59
2179 2241 5.003804 AGCCAAACTGGTGTTAATCTACAG 58.996 41.667 0.00 0.00 40.46 2.74
2180 2242 4.379499 GCCAAACTGGTGTTAATCTACAGC 60.379 45.833 0.00 0.00 44.59 4.40
2227 2711 2.610694 GCCATGACGCGATCCCATG 61.611 63.158 15.93 18.74 37.87 3.66
2265 2749 0.315568 GGATCCTGAATCTCCCGTCG 59.684 60.000 3.84 0.00 34.56 5.12
2280 2764 1.721487 GTCGCATCATTCCAACCGG 59.279 57.895 0.00 0.00 0.00 5.28
2300 2784 0.981943 TCGAAACCTTCTTCTCCCCC 59.018 55.000 0.00 0.00 0.00 5.40
2316 2800 0.178906 CCCCCAAATCCAACCAACCT 60.179 55.000 0.00 0.00 0.00 3.50
2317 2801 1.266178 CCCCAAATCCAACCAACCTC 58.734 55.000 0.00 0.00 0.00 3.85
2328 2813 2.456840 CAACCTCCCTCCCCCTCT 59.543 66.667 0.00 0.00 0.00 3.69
2434 2919 3.017581 AAGGCCCGGGAGCTCATT 61.018 61.111 29.31 7.41 0.00 2.57
2644 3129 2.363276 TGCTGGATCCCGTACGGT 60.363 61.111 31.24 15.56 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.140589 AATGAGCGAGGAGAGCGTG 59.859 57.895 0.00 0.00 40.04 5.34
1 2 1.140589 CAATGAGCGAGGAGAGCGT 59.859 57.895 0.00 0.00 40.04 5.07
2 3 2.236382 GCAATGAGCGAGGAGAGCG 61.236 63.158 0.00 0.00 40.04 5.03
3 4 3.716585 GCAATGAGCGAGGAGAGC 58.283 61.111 0.00 0.00 0.00 4.09
12 13 2.848691 AGGAGAAGCATAGCAATGAGC 58.151 47.619 0.00 0.00 46.19 4.26
13 14 5.465532 TCTAGGAGAAGCATAGCAATGAG 57.534 43.478 0.00 0.00 34.84 2.90
14 15 6.950619 TCTATCTAGGAGAAGCATAGCAATGA 59.049 38.462 0.00 0.00 34.84 2.57
15 16 7.167924 TCTATCTAGGAGAAGCATAGCAATG 57.832 40.000 0.00 0.00 36.09 2.82
16 17 7.840716 AGATCTATCTAGGAGAAGCATAGCAAT 59.159 37.037 0.00 0.00 34.85 3.56
17 18 7.181361 AGATCTATCTAGGAGAAGCATAGCAA 58.819 38.462 0.00 0.00 34.85 3.91
18 19 6.730447 AGATCTATCTAGGAGAAGCATAGCA 58.270 40.000 0.00 0.00 34.85 3.49
19 20 7.483307 CAAGATCTATCTAGGAGAAGCATAGC 58.517 42.308 0.00 0.00 35.76 2.97
20 21 7.483307 GCAAGATCTATCTAGGAGAAGCATAG 58.517 42.308 0.00 0.00 35.76 2.23
21 22 6.094742 CGCAAGATCTATCTAGGAGAAGCATA 59.905 42.308 0.00 0.00 43.02 3.14
22 23 5.105797 CGCAAGATCTATCTAGGAGAAGCAT 60.106 44.000 0.00 0.00 43.02 3.79
23 24 4.217334 CGCAAGATCTATCTAGGAGAAGCA 59.783 45.833 0.00 0.00 43.02 3.91
24 25 4.217550 ACGCAAGATCTATCTAGGAGAAGC 59.782 45.833 0.00 2.65 43.62 3.86
25 26 5.471797 TCACGCAAGATCTATCTAGGAGAAG 59.528 44.000 0.00 0.00 43.62 2.85
26 27 5.377478 TCACGCAAGATCTATCTAGGAGAA 58.623 41.667 0.00 0.00 43.62 2.87
27 28 4.974399 TCACGCAAGATCTATCTAGGAGA 58.026 43.478 0.00 0.00 43.62 3.71
28 29 5.447144 CGATCACGCAAGATCTATCTAGGAG 60.447 48.000 12.06 0.00 41.74 3.69
29 30 4.393371 CGATCACGCAAGATCTATCTAGGA 59.607 45.833 12.06 0.00 41.74 2.94
30 31 4.155099 ACGATCACGCAAGATCTATCTAGG 59.845 45.833 12.06 0.32 41.74 3.02
31 32 5.289917 ACGATCACGCAAGATCTATCTAG 57.710 43.478 12.06 0.00 41.74 2.43
32 33 6.594159 TCATACGATCACGCAAGATCTATCTA 59.406 38.462 12.06 0.00 41.74 1.98
33 34 5.412904 TCATACGATCACGCAAGATCTATCT 59.587 40.000 12.06 0.00 41.74 1.98
34 35 5.631992 TCATACGATCACGCAAGATCTATC 58.368 41.667 12.06 0.00 41.74 2.08
35 36 5.629079 TCATACGATCACGCAAGATCTAT 57.371 39.130 12.06 7.31 41.74 1.98
36 37 5.629079 ATCATACGATCACGCAAGATCTA 57.371 39.130 12.06 5.78 41.74 1.98
37 38 3.990318 TCATACGATCACGCAAGATCT 57.010 42.857 12.06 0.00 41.74 2.75
38 39 5.582439 AAATCATACGATCACGCAAGATC 57.418 39.130 5.52 5.52 43.96 2.75
39 40 5.991328 AAAATCATACGATCACGCAAGAT 57.009 34.783 0.00 0.00 43.96 2.40
40 41 5.794687 AAAAATCATACGATCACGCAAGA 57.205 34.783 0.00 0.00 43.96 3.02
61 62 8.558700 GTGTTAGGGAACGTAGTATTTCAAAAA 58.441 33.333 0.00 0.00 45.00 1.94
62 63 7.173047 GGTGTTAGGGAACGTAGTATTTCAAAA 59.827 37.037 0.00 0.00 45.00 2.44
63 64 6.650390 GGTGTTAGGGAACGTAGTATTTCAAA 59.350 38.462 0.00 0.00 45.00 2.69
64 65 6.014327 AGGTGTTAGGGAACGTAGTATTTCAA 60.014 38.462 0.00 0.00 45.00 2.69
65 66 5.481473 AGGTGTTAGGGAACGTAGTATTTCA 59.519 40.000 0.00 0.00 45.00 2.69
66 67 5.970592 AGGTGTTAGGGAACGTAGTATTTC 58.029 41.667 0.00 0.00 45.00 2.17
67 68 6.364568 AAGGTGTTAGGGAACGTAGTATTT 57.635 37.500 0.00 0.00 45.00 1.40
68 69 6.364568 AAAGGTGTTAGGGAACGTAGTATT 57.635 37.500 0.00 0.00 45.00 1.89
69 70 7.323420 GTTAAAGGTGTTAGGGAACGTAGTAT 58.677 38.462 0.00 0.00 45.00 2.12
70 71 6.295067 GGTTAAAGGTGTTAGGGAACGTAGTA 60.295 42.308 0.00 0.00 45.00 1.82
72 73 4.931601 GGTTAAAGGTGTTAGGGAACGTAG 59.068 45.833 0.00 0.00 38.51 3.51
73 74 4.346418 TGGTTAAAGGTGTTAGGGAACGTA 59.654 41.667 0.00 0.00 38.51 3.57
74 75 3.136260 TGGTTAAAGGTGTTAGGGAACGT 59.864 43.478 0.00 0.00 38.51 3.99
75 76 3.499537 GTGGTTAAAGGTGTTAGGGAACG 59.500 47.826 0.00 0.00 38.51 3.95
76 77 3.822735 GGTGGTTAAAGGTGTTAGGGAAC 59.177 47.826 0.00 0.00 36.00 3.62
77 78 3.181430 GGGTGGTTAAAGGTGTTAGGGAA 60.181 47.826 0.00 0.00 0.00 3.97
78 79 2.376181 GGGTGGTTAAAGGTGTTAGGGA 59.624 50.000 0.00 0.00 0.00 4.20
79 80 2.799017 GGGTGGTTAAAGGTGTTAGGG 58.201 52.381 0.00 0.00 0.00 3.53
80 81 2.038820 TCGGGTGGTTAAAGGTGTTAGG 59.961 50.000 0.00 0.00 0.00 2.69
81 82 3.069289 GTCGGGTGGTTAAAGGTGTTAG 58.931 50.000 0.00 0.00 0.00 2.34
82 83 2.547642 CGTCGGGTGGTTAAAGGTGTTA 60.548 50.000 0.00 0.00 0.00 2.41
83 84 1.811176 CGTCGGGTGGTTAAAGGTGTT 60.811 52.381 0.00 0.00 0.00 3.32
84 85 0.249996 CGTCGGGTGGTTAAAGGTGT 60.250 55.000 0.00 0.00 0.00 4.16
85 86 1.571215 GCGTCGGGTGGTTAAAGGTG 61.571 60.000 0.00 0.00 0.00 4.00
104 105 1.201647 TCCCTCTTTCTAGACGTTGCG 59.798 52.381 0.00 0.00 0.00 4.85
105 106 2.417515 CCTCCCTCTTTCTAGACGTTGC 60.418 54.545 0.00 0.00 0.00 4.17
112 113 1.576272 TCTCCCCCTCCCTCTTTCTAG 59.424 57.143 0.00 0.00 0.00 2.43
113 114 1.576272 CTCTCCCCCTCCCTCTTTCTA 59.424 57.143 0.00 0.00 0.00 2.10
194 196 3.007940 TCCTTACATGTGAGACCCAACAG 59.992 47.826 18.62 0.09 0.00 3.16
201 203 4.471904 TGACCATCCTTACATGTGAGAC 57.528 45.455 18.62 4.24 0.00 3.36
204 206 5.630121 AGTTTTGACCATCCTTACATGTGA 58.370 37.500 9.11 0.00 0.00 3.58
220 222 7.638444 TGGTGATATTTCCAGGATAGTTTTGA 58.362 34.615 0.00 0.00 0.00 2.69
224 226 7.392766 TCATGGTGATATTTCCAGGATAGTT 57.607 36.000 9.36 0.00 39.15 2.24
262 264 3.678056 AATGTGCTTCCGTCTAGTCAA 57.322 42.857 0.00 0.00 0.00 3.18
295 308 3.318839 CAGTTTGCCTCTGTTCCATTTGA 59.681 43.478 0.00 0.00 0.00 2.69
300 313 1.815408 GCTCAGTTTGCCTCTGTTCCA 60.815 52.381 0.00 0.00 34.86 3.53
308 321 0.679505 TAGTCGTGCTCAGTTTGCCT 59.320 50.000 0.00 0.00 0.00 4.75
311 324 4.795970 AACTTTAGTCGTGCTCAGTTTG 57.204 40.909 0.00 0.00 30.71 2.93
312 325 4.989168 CCTAACTTTAGTCGTGCTCAGTTT 59.011 41.667 10.21 0.00 34.50 2.66
382 396 8.739039 CCACAGTATGATCACAAAAATAAAGGA 58.261 33.333 0.00 0.00 39.69 3.36
383 397 8.522830 ACCACAGTATGATCACAAAAATAAAGG 58.477 33.333 0.00 0.00 39.69 3.11
384 398 9.912634 AACCACAGTATGATCACAAAAATAAAG 57.087 29.630 0.00 0.00 39.69 1.85
385 399 9.906660 GAACCACAGTATGATCACAAAAATAAA 57.093 29.630 0.00 0.00 39.69 1.40
386 400 8.519526 GGAACCACAGTATGATCACAAAAATAA 58.480 33.333 0.00 0.00 39.69 1.40
387 401 7.667635 TGGAACCACAGTATGATCACAAAAATA 59.332 33.333 0.00 0.00 39.69 1.40
388 402 6.493115 TGGAACCACAGTATGATCACAAAAAT 59.507 34.615 0.00 0.00 39.69 1.82
389 403 5.830457 TGGAACCACAGTATGATCACAAAAA 59.170 36.000 0.00 0.00 39.69 1.94
390 404 5.380900 TGGAACCACAGTATGATCACAAAA 58.619 37.500 0.00 0.00 39.69 2.44
391 405 4.979335 TGGAACCACAGTATGATCACAAA 58.021 39.130 0.00 0.00 39.69 2.83
392 406 4.632327 TGGAACCACAGTATGATCACAA 57.368 40.909 0.00 0.00 39.69 3.33
393 407 4.632327 TTGGAACCACAGTATGATCACA 57.368 40.909 0.00 0.00 39.69 3.58
394 408 7.624360 TTATTTGGAACCACAGTATGATCAC 57.376 36.000 0.00 0.00 39.69 3.06
395 409 8.106462 TCTTTATTTGGAACCACAGTATGATCA 58.894 33.333 0.00 0.00 39.69 2.92
396 410 8.506168 TCTTTATTTGGAACCACAGTATGATC 57.494 34.615 0.00 0.00 39.69 2.92
475 489 2.606725 CGCCTGTTGAAGATGCTCTTAG 59.393 50.000 0.00 0.00 36.73 2.18
476 490 2.621338 CGCCTGTTGAAGATGCTCTTA 58.379 47.619 0.00 0.00 36.73 2.10
477 491 1.446907 CGCCTGTTGAAGATGCTCTT 58.553 50.000 0.00 0.00 39.87 2.85
478 492 1.023513 GCGCCTGTTGAAGATGCTCT 61.024 55.000 0.00 0.00 0.00 4.09
479 493 1.300971 TGCGCCTGTTGAAGATGCTC 61.301 55.000 4.18 0.00 0.00 4.26
480 494 1.302752 TGCGCCTGTTGAAGATGCT 60.303 52.632 4.18 0.00 0.00 3.79
481 495 1.154150 GTGCGCCTGTTGAAGATGC 60.154 57.895 4.18 0.00 0.00 3.91
482 496 0.592637 TTGTGCGCCTGTTGAAGATG 59.407 50.000 4.18 0.00 0.00 2.90
483 497 1.317613 TTTGTGCGCCTGTTGAAGAT 58.682 45.000 4.18 0.00 0.00 2.40
484 498 1.065401 CTTTTGTGCGCCTGTTGAAGA 59.935 47.619 4.18 0.00 0.00 2.87
485 499 1.202290 ACTTTTGTGCGCCTGTTGAAG 60.202 47.619 4.18 4.39 0.00 3.02
486 500 0.814457 ACTTTTGTGCGCCTGTTGAA 59.186 45.000 4.18 0.00 0.00 2.69
487 501 0.814457 AACTTTTGTGCGCCTGTTGA 59.186 45.000 4.18 0.00 0.00 3.18
488 502 1.587946 GAAACTTTTGTGCGCCTGTTG 59.412 47.619 4.18 0.00 0.00 3.33
489 503 1.203523 TGAAACTTTTGTGCGCCTGTT 59.796 42.857 4.18 0.00 0.00 3.16
490 504 0.814457 TGAAACTTTTGTGCGCCTGT 59.186 45.000 4.18 0.00 0.00 4.00
491 505 1.199624 GTGAAACTTTTGTGCGCCTG 58.800 50.000 4.18 0.00 0.00 4.85
492 506 0.248458 CGTGAAACTTTTGTGCGCCT 60.248 50.000 4.18 0.00 31.75 5.52
493 507 1.807242 GCGTGAAACTTTTGTGCGCC 61.807 55.000 4.18 0.00 35.65 6.53
494 508 1.553185 GCGTGAAACTTTTGTGCGC 59.447 52.632 0.00 0.00 34.88 6.09
495 509 1.528248 CCGCGTGAAACTTTTGTGCG 61.528 55.000 4.92 0.00 43.34 5.34
496 510 0.524604 ACCGCGTGAAACTTTTGTGC 60.525 50.000 4.92 0.00 31.75 4.57
497 511 2.741122 TACCGCGTGAAACTTTTGTG 57.259 45.000 4.92 0.00 31.75 3.33
498 512 3.761311 TTTACCGCGTGAAACTTTTGT 57.239 38.095 4.92 0.00 31.75 2.83
499 513 5.910723 AGTATTTTACCGCGTGAAACTTTTG 59.089 36.000 4.92 0.00 31.75 2.44
500 514 6.063640 AGTATTTTACCGCGTGAAACTTTT 57.936 33.333 4.92 0.00 31.75 2.27
501 515 5.678132 AGTATTTTACCGCGTGAAACTTT 57.322 34.783 4.92 0.00 31.75 2.66
502 516 5.678132 AAGTATTTTACCGCGTGAAACTT 57.322 34.783 4.92 2.94 31.75 2.66
503 517 5.678132 AAAGTATTTTACCGCGTGAAACT 57.322 34.783 4.92 1.76 31.62 2.66
517 531 5.385509 ACAATGGCGCACTAAAAGTATTT 57.614 34.783 10.83 0.00 42.41 1.40
518 532 5.448632 GCTACAATGGCGCACTAAAAGTATT 60.449 40.000 10.83 0.00 0.00 1.89
519 533 4.035208 GCTACAATGGCGCACTAAAAGTAT 59.965 41.667 10.83 0.00 0.00 2.12
520 534 3.372822 GCTACAATGGCGCACTAAAAGTA 59.627 43.478 10.83 1.46 0.00 2.24
521 535 2.161609 GCTACAATGGCGCACTAAAAGT 59.838 45.455 10.83 0.16 0.00 2.66
522 536 2.161410 TGCTACAATGGCGCACTAAAAG 59.839 45.455 10.83 0.14 0.00 2.27
523 537 2.155279 TGCTACAATGGCGCACTAAAA 58.845 42.857 10.83 0.00 0.00 1.52
524 538 1.814793 TGCTACAATGGCGCACTAAA 58.185 45.000 10.83 0.00 0.00 1.85
525 539 3.542046 TGCTACAATGGCGCACTAA 57.458 47.368 10.83 0.00 0.00 2.24
529 543 0.958091 AAAAGTGCTACAATGGCGCA 59.042 45.000 10.83 0.00 41.94 6.09
530 544 2.785679 CTAAAAGTGCTACAATGGCGC 58.214 47.619 0.00 0.00 40.08 6.53
531 545 2.161410 TGCTAAAAGTGCTACAATGGCG 59.839 45.455 0.00 0.00 0.00 5.69
532 546 3.501950 GTGCTAAAAGTGCTACAATGGC 58.498 45.455 0.00 0.00 0.00 4.40
533 547 3.747193 CGTGCTAAAAGTGCTACAATGG 58.253 45.455 0.00 0.00 0.00 3.16
534 548 3.163594 GCGTGCTAAAAGTGCTACAATG 58.836 45.455 0.00 0.00 0.00 2.82
535 549 2.161609 GGCGTGCTAAAAGTGCTACAAT 59.838 45.455 0.00 0.00 0.00 2.71
536 550 1.533731 GGCGTGCTAAAAGTGCTACAA 59.466 47.619 0.00 0.00 0.00 2.41
537 551 1.153353 GGCGTGCTAAAAGTGCTACA 58.847 50.000 0.00 0.00 0.00 2.74
538 552 0.094730 CGGCGTGCTAAAAGTGCTAC 59.905 55.000 0.00 0.00 0.00 3.58
539 553 0.038067 TCGGCGTGCTAAAAGTGCTA 60.038 50.000 6.85 0.00 0.00 3.49
540 554 0.882927 TTCGGCGTGCTAAAAGTGCT 60.883 50.000 6.85 0.00 0.00 4.40
541 555 0.168128 ATTCGGCGTGCTAAAAGTGC 59.832 50.000 6.85 0.00 0.00 4.40
542 556 1.202031 GGATTCGGCGTGCTAAAAGTG 60.202 52.381 6.85 0.00 0.00 3.16
543 557 1.084289 GGATTCGGCGTGCTAAAAGT 58.916 50.000 6.85 0.00 0.00 2.66
544 558 1.083489 TGGATTCGGCGTGCTAAAAG 58.917 50.000 6.85 0.00 0.00 2.27
545 559 1.198178 GTTGGATTCGGCGTGCTAAAA 59.802 47.619 6.85 0.00 0.00 1.52
546 560 0.800012 GTTGGATTCGGCGTGCTAAA 59.200 50.000 6.85 0.00 0.00 1.85
547 561 0.320858 TGTTGGATTCGGCGTGCTAA 60.321 50.000 6.85 0.00 0.00 3.09
548 562 0.107897 ATGTTGGATTCGGCGTGCTA 60.108 50.000 6.85 0.00 0.00 3.49
549 563 0.960364 AATGTTGGATTCGGCGTGCT 60.960 50.000 6.85 0.00 0.00 4.40
550 564 0.798009 CAATGTTGGATTCGGCGTGC 60.798 55.000 6.85 0.00 0.00 5.34
551 565 3.311080 CAATGTTGGATTCGGCGTG 57.689 52.632 6.85 0.00 0.00 5.34
556 570 9.453365 GCATTTGCTAAACCAATGTTGGATTCG 62.453 40.741 18.17 9.78 41.66 3.34
557 571 6.402442 GCATTTGCTAAACCAATGTTGGATTC 60.402 38.462 18.17 3.23 41.66 2.52
558 572 5.412286 GCATTTGCTAAACCAATGTTGGATT 59.588 36.000 18.17 14.45 44.29 3.01
559 573 4.937015 GCATTTGCTAAACCAATGTTGGAT 59.063 37.500 18.17 3.67 43.79 3.41
560 574 4.314121 GCATTTGCTAAACCAATGTTGGA 58.686 39.130 18.17 0.00 43.79 3.53
561 575 3.436359 GGCATTTGCTAAACCAATGTTGG 59.564 43.478 10.16 10.16 46.68 3.77
562 576 3.436359 GGGCATTTGCTAAACCAATGTTG 59.564 43.478 2.12 0.00 41.70 3.33
563 577 3.072184 TGGGCATTTGCTAAACCAATGTT 59.928 39.130 2.12 0.00 41.70 2.71
564 578 2.636893 TGGGCATTTGCTAAACCAATGT 59.363 40.909 2.12 0.00 41.70 2.71
565 579 3.331478 TGGGCATTTGCTAAACCAATG 57.669 42.857 2.12 0.00 41.70 2.82
566 580 4.363991 TTTGGGCATTTGCTAAACCAAT 57.636 36.364 12.90 0.00 38.05 3.16
567 581 3.845781 TTTGGGCATTTGCTAAACCAA 57.154 38.095 9.68 9.68 41.70 3.67
568 582 3.845781 TTTTGGGCATTTGCTAAACCA 57.154 38.095 2.12 0.00 41.70 3.67
569 583 3.879892 TGTTTTTGGGCATTTGCTAAACC 59.120 39.130 2.12 0.00 41.70 3.27
570 584 4.551797 CGTGTTTTTGGGCATTTGCTAAAC 60.552 41.667 2.12 8.64 41.70 2.01
571 585 3.557595 CGTGTTTTTGGGCATTTGCTAAA 59.442 39.130 2.12 2.54 41.70 1.85
572 586 3.126831 CGTGTTTTTGGGCATTTGCTAA 58.873 40.909 2.12 0.00 41.70 3.09
573 587 2.748605 CGTGTTTTTGGGCATTTGCTA 58.251 42.857 2.12 0.00 41.70 3.49
574 588 1.580815 CGTGTTTTTGGGCATTTGCT 58.419 45.000 2.12 0.00 41.70 3.91
575 589 0.041400 GCGTGTTTTTGGGCATTTGC 60.041 50.000 0.00 0.00 41.14 3.68
576 590 0.231790 CGCGTGTTTTTGGGCATTTG 59.768 50.000 0.00 0.00 0.00 2.32
577 591 0.179097 ACGCGTGTTTTTGGGCATTT 60.179 45.000 12.93 0.00 0.00 2.32
578 592 0.596341 GACGCGTGTTTTTGGGCATT 60.596 50.000 20.70 0.00 0.00 3.56
579 593 1.007849 GACGCGTGTTTTTGGGCAT 60.008 52.632 20.70 0.00 0.00 4.40
580 594 2.409651 GACGCGTGTTTTTGGGCA 59.590 55.556 20.70 0.00 0.00 5.36
581 595 2.354188 GGACGCGTGTTTTTGGGC 60.354 61.111 20.70 0.00 0.00 5.36
582 596 0.179134 TTTGGACGCGTGTTTTTGGG 60.179 50.000 20.70 0.00 0.00 4.12
583 597 1.630148 TTTTGGACGCGTGTTTTTGG 58.370 45.000 20.70 0.00 0.00 3.28
600 614 9.762933 ACTTCATAATTTGCACTATGTGTTTTT 57.237 25.926 8.67 0.00 35.75 1.94
601 615 9.195411 CACTTCATAATTTGCACTATGTGTTTT 57.805 29.630 8.67 0.00 35.75 2.43
602 616 7.329226 GCACTTCATAATTTGCACTATGTGTTT 59.671 33.333 8.67 0.00 35.75 2.83
603 617 6.808212 GCACTTCATAATTTGCACTATGTGTT 59.192 34.615 8.67 0.00 35.75 3.32
604 618 6.324819 GCACTTCATAATTTGCACTATGTGT 58.675 36.000 8.67 7.09 35.75 3.72
605 619 5.453266 CGCACTTCATAATTTGCACTATGTG 59.547 40.000 8.67 0.00 34.49 3.21
606 620 5.572211 CGCACTTCATAATTTGCACTATGT 58.428 37.500 8.67 0.00 34.49 2.29
607 621 4.438797 GCGCACTTCATAATTTGCACTATG 59.561 41.667 0.30 0.00 34.49 2.23
608 622 4.601019 GCGCACTTCATAATTTGCACTAT 58.399 39.130 0.30 0.00 34.49 2.12
609 623 3.485051 CGCGCACTTCATAATTTGCACTA 60.485 43.478 8.75 0.00 34.49 2.74
610 624 2.728846 CGCGCACTTCATAATTTGCACT 60.729 45.455 8.75 0.00 34.49 4.40
611 625 1.578915 CGCGCACTTCATAATTTGCAC 59.421 47.619 8.75 0.00 34.49 4.57
612 626 1.198867 ACGCGCACTTCATAATTTGCA 59.801 42.857 5.73 0.00 34.49 4.08
613 627 1.895051 ACGCGCACTTCATAATTTGC 58.105 45.000 5.73 0.00 0.00 3.68
614 628 4.670621 GGATTACGCGCACTTCATAATTTG 59.329 41.667 5.73 0.00 0.00 2.32
615 629 4.551990 CGGATTACGCGCACTTCATAATTT 60.552 41.667 5.73 0.00 34.82 1.82
616 630 3.059868 CGGATTACGCGCACTTCATAATT 60.060 43.478 5.73 0.00 34.82 1.40
617 631 2.475111 CGGATTACGCGCACTTCATAAT 59.525 45.455 5.73 0.00 34.82 1.28
618 632 1.855978 CGGATTACGCGCACTTCATAA 59.144 47.619 5.73 0.00 34.82 1.90
619 633 1.483316 CGGATTACGCGCACTTCATA 58.517 50.000 5.73 0.00 34.82 2.15
620 634 1.151777 CCGGATTACGCGCACTTCAT 61.152 55.000 5.73 0.00 42.52 2.57
621 635 1.807981 CCGGATTACGCGCACTTCA 60.808 57.895 5.73 0.00 42.52 3.02
622 636 3.003478 CCGGATTACGCGCACTTC 58.997 61.111 5.73 0.00 42.52 3.01
623 637 3.192922 GCCGGATTACGCGCACTT 61.193 61.111 5.05 0.00 42.52 3.16
630 644 4.841861 TTGGGGCGCCGGATTACG 62.842 66.667 22.54 0.00 43.80 3.18
631 645 1.388837 AATTTGGGGCGCCGGATTAC 61.389 55.000 22.54 4.71 0.00 1.89
632 646 0.684805 AAATTTGGGGCGCCGGATTA 60.685 50.000 22.54 4.71 0.00 1.75
633 647 1.987306 AAATTTGGGGCGCCGGATT 60.987 52.632 22.54 14.24 0.00 3.01
634 648 2.363665 AAATTTGGGGCGCCGGAT 60.364 55.556 22.54 8.53 0.00 4.18
635 649 3.377759 CAAATTTGGGGCGCCGGA 61.378 61.111 22.54 6.05 0.00 5.14
637 651 4.370066 TGCAAATTTGGGGCGCCG 62.370 61.111 22.54 4.62 0.00 6.46
638 652 2.434709 CTGCAAATTTGGGGCGCC 60.435 61.111 21.18 21.18 0.00 6.53
639 653 3.120385 GCTGCAAATTTGGGGCGC 61.120 61.111 19.47 0.00 0.00 6.53
640 654 1.004679 AAGCTGCAAATTTGGGGCG 60.005 52.632 19.47 3.96 0.00 6.13
641 655 0.322648 AGAAGCTGCAAATTTGGGGC 59.677 50.000 19.47 6.19 0.00 5.80
642 656 1.619827 TCAGAAGCTGCAAATTTGGGG 59.380 47.619 19.47 0.00 0.00 4.96
643 657 3.604875 ATCAGAAGCTGCAAATTTGGG 57.395 42.857 19.47 0.00 0.00 4.12
644 658 4.110482 GCTATCAGAAGCTGCAAATTTGG 58.890 43.478 19.47 5.27 39.50 3.28
645 659 3.789756 CGCTATCAGAAGCTGCAAATTTG 59.210 43.478 14.03 14.03 40.49 2.32
646 660 3.733077 GCGCTATCAGAAGCTGCAAATTT 60.733 43.478 0.00 0.00 40.49 1.82
647 661 2.223433 GCGCTATCAGAAGCTGCAAATT 60.223 45.455 0.00 0.00 40.49 1.82
648 662 1.332997 GCGCTATCAGAAGCTGCAAAT 59.667 47.619 0.00 0.00 40.49 2.32
649 663 0.729116 GCGCTATCAGAAGCTGCAAA 59.271 50.000 0.00 0.00 40.49 3.68
650 664 0.107993 AGCGCTATCAGAAGCTGCAA 60.108 50.000 8.99 0.00 41.36 4.08
651 665 0.107993 AAGCGCTATCAGAAGCTGCA 60.108 50.000 12.05 0.00 41.36 4.41
652 666 1.012841 AAAGCGCTATCAGAAGCTGC 58.987 50.000 12.05 0.00 40.49 5.25
653 667 3.754188 AAAAAGCGCTATCAGAAGCTG 57.246 42.857 12.05 0.00 40.49 4.24
654 668 4.201724 CGTTAAAAAGCGCTATCAGAAGCT 60.202 41.667 12.05 0.00 40.49 3.74
655 669 4.022475 CGTTAAAAAGCGCTATCAGAAGC 58.978 43.478 12.05 0.00 39.21 3.86
667 681 0.595310 TTGGGCACGCGTTAAAAAGC 60.595 50.000 10.22 9.06 0.00 3.51
668 682 1.519343 GTTTGGGCACGCGTTAAAAAG 59.481 47.619 10.22 0.00 0.00 2.27
669 683 1.134560 AGTTTGGGCACGCGTTAAAAA 59.865 42.857 10.22 5.48 0.00 1.94
670 684 0.739561 AGTTTGGGCACGCGTTAAAA 59.260 45.000 10.22 5.09 0.00 1.52
671 685 0.739561 AAGTTTGGGCACGCGTTAAA 59.260 45.000 10.22 6.32 0.00 1.52
672 686 0.739561 AAAGTTTGGGCACGCGTTAA 59.260 45.000 10.22 0.00 0.00 2.01
673 687 0.739561 AAAAGTTTGGGCACGCGTTA 59.260 45.000 10.22 0.00 0.00 3.18
674 688 0.108567 AAAAAGTTTGGGCACGCGTT 60.109 45.000 10.22 0.00 0.00 4.84
675 689 1.513622 AAAAAGTTTGGGCACGCGT 59.486 47.368 5.58 5.58 0.00 6.01
676 690 4.411136 AAAAAGTTTGGGCACGCG 57.589 50.000 3.53 3.53 0.00 6.01
696 710 4.795970 AGCTATAAAATAGTGCACACGC 57.204 40.909 21.04 7.31 36.20 5.34
697 711 6.589830 AGAAGCTATAAAATAGTGCACACG 57.410 37.500 21.04 0.00 36.20 4.49
698 712 9.869844 CAATAGAAGCTATAAAATAGTGCACAC 57.130 33.333 21.04 0.00 0.00 3.82
699 713 9.830975 TCAATAGAAGCTATAAAATAGTGCACA 57.169 29.630 21.04 5.47 0.00 4.57
717 731 2.028112 ACGCAGGACAGCTTCAATAGAA 60.028 45.455 0.00 0.00 0.00 2.10
718 732 1.550524 ACGCAGGACAGCTTCAATAGA 59.449 47.619 0.00 0.00 0.00 1.98
719 733 1.929836 GACGCAGGACAGCTTCAATAG 59.070 52.381 0.00 0.00 33.45 1.73
720 734 1.275010 TGACGCAGGACAGCTTCAATA 59.725 47.619 0.00 0.00 39.44 1.90
721 735 0.035317 TGACGCAGGACAGCTTCAAT 59.965 50.000 0.00 0.00 39.44 2.57
722 736 0.179059 TTGACGCAGGACAGCTTCAA 60.179 50.000 4.87 4.87 46.33 2.69
723 737 0.179059 TTTGACGCAGGACAGCTTCA 60.179 50.000 0.00 0.00 40.45 3.02
724 738 0.944386 TTTTGACGCAGGACAGCTTC 59.056 50.000 0.00 0.00 33.80 3.86
725 739 1.388547 TTTTTGACGCAGGACAGCTT 58.611 45.000 0.00 0.00 0.00 3.74
726 740 3.094386 TTTTTGACGCAGGACAGCT 57.906 47.368 0.00 0.00 0.00 4.24
741 755 4.438471 CGCGACGTAAAAATTCAGGTTTTT 59.562 37.500 0.00 3.30 42.25 1.94
742 756 3.969981 CGCGACGTAAAAATTCAGGTTTT 59.030 39.130 0.00 0.00 32.94 2.43
743 757 3.547601 CGCGACGTAAAAATTCAGGTTT 58.452 40.909 0.00 0.00 0.00 3.27
744 758 2.096119 CCGCGACGTAAAAATTCAGGTT 60.096 45.455 8.23 0.00 0.00 3.50
745 759 1.461897 CCGCGACGTAAAAATTCAGGT 59.538 47.619 8.23 0.00 0.00 4.00
746 760 1.727880 TCCGCGACGTAAAAATTCAGG 59.272 47.619 8.23 0.00 0.00 3.86
747 761 2.783316 GCTCCGCGACGTAAAAATTCAG 60.783 50.000 8.23 0.00 0.00 3.02
748 762 1.127213 GCTCCGCGACGTAAAAATTCA 59.873 47.619 8.23 0.00 0.00 2.57
749 763 1.127213 TGCTCCGCGACGTAAAAATTC 59.873 47.619 8.23 0.00 0.00 2.17
750 764 1.127951 CTGCTCCGCGACGTAAAAATT 59.872 47.619 8.23 0.00 0.00 1.82
751 765 0.719465 CTGCTCCGCGACGTAAAAAT 59.281 50.000 8.23 0.00 0.00 1.82
752 766 0.598158 ACTGCTCCGCGACGTAAAAA 60.598 50.000 8.23 0.00 0.00 1.94
753 767 0.598158 AACTGCTCCGCGACGTAAAA 60.598 50.000 8.23 0.00 0.00 1.52
754 768 0.598158 AAACTGCTCCGCGACGTAAA 60.598 50.000 8.23 0.00 0.00 2.01
755 769 0.598158 AAAACTGCTCCGCGACGTAA 60.598 50.000 8.23 0.00 0.00 3.18
756 770 0.598158 AAAAACTGCTCCGCGACGTA 60.598 50.000 8.23 0.00 0.00 3.57
757 771 1.885850 AAAAACTGCTCCGCGACGT 60.886 52.632 8.23 0.00 0.00 4.34
758 772 1.438710 CAAAAACTGCTCCGCGACG 60.439 57.895 8.23 0.00 0.00 5.12
759 773 0.657368 CACAAAAACTGCTCCGCGAC 60.657 55.000 8.23 0.00 0.00 5.19
760 774 0.812014 TCACAAAAACTGCTCCGCGA 60.812 50.000 8.23 0.00 0.00 5.87
761 775 0.657368 GTCACAAAAACTGCTCCGCG 60.657 55.000 0.00 0.00 0.00 6.46
762 776 0.317854 GGTCACAAAAACTGCTCCGC 60.318 55.000 0.00 0.00 0.00 5.54
763 777 0.310854 GGGTCACAAAAACTGCTCCG 59.689 55.000 0.00 0.00 0.00 4.63
764 778 1.338020 CAGGGTCACAAAAACTGCTCC 59.662 52.381 0.00 0.00 0.00 4.70
765 779 2.024414 ACAGGGTCACAAAAACTGCTC 58.976 47.619 0.00 0.00 32.60 4.26
766 780 2.143876 ACAGGGTCACAAAAACTGCT 57.856 45.000 0.00 0.00 32.60 4.24
767 781 2.959507 AACAGGGTCACAAAAACTGC 57.040 45.000 0.00 0.00 32.60 4.40
768 782 5.123227 TCTCTAACAGGGTCACAAAAACTG 58.877 41.667 0.00 0.00 35.40 3.16
769 783 5.367945 TCTCTAACAGGGTCACAAAAACT 57.632 39.130 0.00 0.00 0.00 2.66
770 784 5.562890 GCATCTCTAACAGGGTCACAAAAAC 60.563 44.000 0.00 0.00 0.00 2.43
771 785 4.518970 GCATCTCTAACAGGGTCACAAAAA 59.481 41.667 0.00 0.00 0.00 1.94
772 786 4.072131 GCATCTCTAACAGGGTCACAAAA 58.928 43.478 0.00 0.00 0.00 2.44
773 787 3.327757 AGCATCTCTAACAGGGTCACAAA 59.672 43.478 0.00 0.00 0.00 2.83
774 788 2.906389 AGCATCTCTAACAGGGTCACAA 59.094 45.455 0.00 0.00 0.00 3.33
775 789 2.497675 GAGCATCTCTAACAGGGTCACA 59.502 50.000 0.00 0.00 0.00 3.58
776 790 3.172229 GAGCATCTCTAACAGGGTCAC 57.828 52.381 0.00 0.00 0.00 3.67
790 804 6.965500 CAGATGTTCATTTGTGTTAGAGCATC 59.035 38.462 9.21 9.21 44.15 3.91
791 805 6.656270 TCAGATGTTCATTTGTGTTAGAGCAT 59.344 34.615 0.00 0.00 35.16 3.79
792 806 5.997129 TCAGATGTTCATTTGTGTTAGAGCA 59.003 36.000 3.85 0.00 0.00 4.26
793 807 6.310197 GTCAGATGTTCATTTGTGTTAGAGC 58.690 40.000 3.85 0.00 0.00 4.09
794 808 6.401474 CCGTCAGATGTTCATTTGTGTTAGAG 60.401 42.308 3.85 0.00 0.00 2.43
795 809 5.408299 CCGTCAGATGTTCATTTGTGTTAGA 59.592 40.000 3.85 0.00 0.00 2.10
868 885 2.747855 CCTTTCCGAGCTGGGTGC 60.748 66.667 15.09 0.00 43.29 5.01
941 976 2.223711 GGATTTGTTGACCGTTGTTGCT 60.224 45.455 0.00 0.00 0.00 3.91
1072 1109 0.248661 CCGTAGAGCTCCGACATGTG 60.249 60.000 10.93 0.00 0.00 3.21
1073 1110 0.393944 TCCGTAGAGCTCCGACATGT 60.394 55.000 10.93 0.00 0.00 3.21
1174 1211 2.351253 GGATGACGTCCATGATCTCGAG 60.351 54.545 14.12 5.93 46.96 4.04
1551 1588 1.269413 ACGTCGTTGTACACCTTCCAG 60.269 52.381 0.00 0.00 0.00 3.86
1601 1638 3.117171 CGTCCTCGTCCTCGTCGT 61.117 66.667 0.00 0.00 38.33 4.34
1602 1639 2.800581 CTCGTCCTCGTCCTCGTCG 61.801 68.421 0.00 0.00 38.33 5.12
1603 1640 2.462782 CCTCGTCCTCGTCCTCGTC 61.463 68.421 0.00 0.00 38.33 4.20
1604 1641 2.254737 ATCCTCGTCCTCGTCCTCGT 62.255 60.000 0.00 0.00 38.33 4.18
1605 1642 1.524165 ATCCTCGTCCTCGTCCTCG 60.524 63.158 0.00 0.00 38.33 4.63
1606 1643 0.464013 TCATCCTCGTCCTCGTCCTC 60.464 60.000 0.00 0.00 38.33 3.71
1727 1776 0.248377 CGTGCTACGGTGCTACTACC 60.248 60.000 3.74 0.00 38.08 3.18
1767 1816 1.209019 AGGCTTCAGATCATGCGAACT 59.791 47.619 0.00 0.00 0.00 3.01
1844 1901 2.601314 CCAAATTCGCAGCATCATGTTG 59.399 45.455 0.00 0.00 0.00 3.33
1884 1941 6.038356 CAGCATCATGTTAACCCAAATTCTC 58.962 40.000 2.48 0.00 0.00 2.87
1885 1942 5.625197 GCAGCATCATGTTAACCCAAATTCT 60.625 40.000 2.48 0.00 0.00 2.40
1917 1974 7.573968 ATTCAGGTTTCAGATAATGCTAACC 57.426 36.000 0.00 0.00 40.68 2.85
1918 1975 9.294030 CAAATTCAGGTTTCAGATAATGCTAAC 57.706 33.333 0.00 0.00 0.00 2.34
1919 1976 8.469200 CCAAATTCAGGTTTCAGATAATGCTAA 58.531 33.333 0.00 0.00 0.00 3.09
1920 1977 7.068593 CCCAAATTCAGGTTTCAGATAATGCTA 59.931 37.037 0.00 0.00 0.00 3.49
1921 1978 6.127253 CCCAAATTCAGGTTTCAGATAATGCT 60.127 38.462 0.00 0.00 0.00 3.79
1922 1979 6.044682 CCCAAATTCAGGTTTCAGATAATGC 58.955 40.000 0.00 0.00 0.00 3.56
1923 1980 7.174107 ACCCAAATTCAGGTTTCAGATAATG 57.826 36.000 0.00 0.00 29.94 1.90
1924 1981 7.797121 AACCCAAATTCAGGTTTCAGATAAT 57.203 32.000 6.32 0.00 43.98 1.28
1925 1982 8.581578 GTTAACCCAAATTCAGGTTTCAGATAA 58.418 33.333 15.17 2.91 43.98 1.75
1926 1983 7.726291 TGTTAACCCAAATTCAGGTTTCAGATA 59.274 33.333 15.17 0.00 43.98 1.98
1927 1984 6.553100 TGTTAACCCAAATTCAGGTTTCAGAT 59.447 34.615 15.17 0.00 43.98 2.90
1928 1985 5.894393 TGTTAACCCAAATTCAGGTTTCAGA 59.106 36.000 15.17 2.28 43.98 3.27
1929 1986 6.155475 TGTTAACCCAAATTCAGGTTTCAG 57.845 37.500 15.17 0.00 43.98 3.02
1930 1987 6.325028 TCATGTTAACCCAAATTCAGGTTTCA 59.675 34.615 15.17 14.39 43.98 2.69
1931 1988 6.754193 TCATGTTAACCCAAATTCAGGTTTC 58.246 36.000 15.17 10.55 43.98 2.78
1932 1989 6.739331 TCATGTTAACCCAAATTCAGGTTT 57.261 33.333 15.17 1.95 43.98 3.27
1934 1991 5.337491 GCATCATGTTAACCCAAATTCAGGT 60.337 40.000 2.48 0.00 38.27 4.00
1935 1992 5.111293 GCATCATGTTAACCCAAATTCAGG 58.889 41.667 2.48 0.00 0.00 3.86
1936 1993 5.111293 GGCATCATGTTAACCCAAATTCAG 58.889 41.667 2.48 0.00 0.00 3.02
1937 1994 4.381398 CGGCATCATGTTAACCCAAATTCA 60.381 41.667 2.48 0.00 0.00 2.57
1938 1995 4.111916 CGGCATCATGTTAACCCAAATTC 58.888 43.478 2.48 0.00 0.00 2.17
1939 1996 3.678529 GCGGCATCATGTTAACCCAAATT 60.679 43.478 2.48 0.00 0.00 1.82
1940 1997 2.159114 GCGGCATCATGTTAACCCAAAT 60.159 45.455 2.48 0.00 0.00 2.32
1941 1998 1.203523 GCGGCATCATGTTAACCCAAA 59.796 47.619 2.48 0.00 0.00 3.28
1942 1999 0.814457 GCGGCATCATGTTAACCCAA 59.186 50.000 2.48 0.00 0.00 4.12
1943 2000 1.372838 CGCGGCATCATGTTAACCCA 61.373 55.000 0.00 0.00 0.00 4.51
1944 2001 1.355210 CGCGGCATCATGTTAACCC 59.645 57.895 0.00 0.00 0.00 4.11
1985 2042 2.620585 GGCTTCAGATAATGTTCAGGCC 59.379 50.000 0.00 0.00 0.00 5.19
2025 2082 2.446435 ACTAACCCAAATTCGCAGCAT 58.554 42.857 0.00 0.00 0.00 3.79
2047 2104 4.752101 AGTTACTACTGCAGCTTCTGTTTG 59.248 41.667 15.27 0.00 33.43 2.93
2179 2241 2.079158 TGTAGAAGCAGAGCACAATGC 58.921 47.619 0.00 0.00 45.46 3.56
2180 2242 3.120060 GGTTGTAGAAGCAGAGCACAATG 60.120 47.826 0.00 0.00 32.27 2.82
2181 2243 3.077359 GGTTGTAGAAGCAGAGCACAAT 58.923 45.455 0.00 0.00 32.27 2.71
2227 2711 2.901839 TCCGGGGGCTGTATTTATAGAC 59.098 50.000 0.00 0.00 0.00 2.59
2265 2749 0.742990 TCGACCGGTTGGAATGATGC 60.743 55.000 21.96 0.00 39.21 3.91
2280 2764 1.338864 GGGGGAGAAGAAGGTTTCGAC 60.339 57.143 0.00 0.00 34.02 4.20
2300 2784 1.203174 AGGGAGGTTGGTTGGATTTGG 60.203 52.381 0.00 0.00 0.00 3.28
2316 2800 1.228920 TAGAAGCAGAGGGGGAGGGA 61.229 60.000 0.00 0.00 0.00 4.20
2317 2801 0.326618 TTAGAAGCAGAGGGGGAGGG 60.327 60.000 0.00 0.00 0.00 4.30
2434 2919 3.075005 GGGGCGAGGTAGTGCTGA 61.075 66.667 0.00 0.00 0.00 4.26
2458 2943 4.065281 GTGACGTAGCCGCCCAGT 62.065 66.667 0.00 0.00 37.70 4.00
2524 3009 3.393970 CGGCTGAAGGGGAGCTCA 61.394 66.667 17.19 0.00 36.63 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.