Multiple sequence alignment - TraesCS2A01G327200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G327200 chr2A 100.000 6651 0 0 1 6651 558653818 558647168 0.000000e+00 12283.0
1 TraesCS2A01G327200 chr2A 81.250 496 56 24 184 660 68019834 68019357 3.790000e-97 366.0
2 TraesCS2A01G327200 chr2B 95.595 3496 119 20 808 4277 506099076 506102562 0.000000e+00 5570.0
3 TraesCS2A01G327200 chr2B 92.380 2008 89 28 4330 6310 506102677 506104647 0.000000e+00 2802.0
4 TraesCS2A01G327200 chr2B 84.524 84 10 3 2 83 398696245 398696327 5.530000e-11 80.5
5 TraesCS2A01G327200 chr2B 100.000 33 0 0 4299 4331 506102562 506102594 2.000000e-05 62.1
6 TraesCS2A01G327200 chr2D 94.205 2830 91 33 1470 4251 429053665 429056469 0.000000e+00 4250.0
7 TraesCS2A01G327200 chr2D 95.101 1980 77 5 4342 6311 429056472 429058441 0.000000e+00 3101.0
8 TraesCS2A01G327200 chr2D 90.074 544 28 12 661 1181 429052859 429053399 0.000000e+00 682.0
9 TraesCS2A01G327200 chr2D 90.667 225 18 3 1245 1469 429053402 429053623 5.040000e-76 296.0
10 TraesCS2A01G327200 chr4A 97.118 347 8 1 6307 6651 677940355 677940701 9.610000e-163 584.0
11 TraesCS2A01G327200 chr4A 95.965 347 12 1 6307 6651 714739545 714739891 4.500000e-156 562.0
12 TraesCS2A01G327200 chr1A 96.830 347 9 1 6307 6651 394577774 394578120 4.470000e-161 579.0
13 TraesCS2A01G327200 chr1A 96.830 347 9 1 6307 6651 588690110 588689764 4.470000e-161 579.0
14 TraesCS2A01G327200 chr5B 96.254 347 11 1 6307 6651 509473206 509472860 9.680000e-158 568.0
15 TraesCS2A01G327200 chr5B 95.965 347 12 2 6307 6651 537596834 537596488 4.500000e-156 562.0
16 TraesCS2A01G327200 chr5B 95.677 347 13 1 6307 6651 332423890 332424236 2.100000e-154 556.0
17 TraesCS2A01G327200 chrUn 95.965 347 12 1 6307 6651 353401042 353401388 4.500000e-156 562.0
18 TraesCS2A01G327200 chr7A 95.677 347 11 2 6307 6651 507816678 507817022 7.540000e-154 555.0
19 TraesCS2A01G327200 chr3B 83.817 482 54 14 205 663 811726484 811726004 2.850000e-118 436.0
20 TraesCS2A01G327200 chr3B 82.866 321 44 3 184 503 741613538 741613848 1.830000e-70 278.0
21 TraesCS2A01G327200 chr3B 82.278 79 11 3 7 83 741613106 741613183 1.550000e-06 65.8
22 TraesCS2A01G327200 chr7D 83.932 473 46 18 205 660 548618823 548618364 6.160000e-115 425.0
23 TraesCS2A01G327200 chr7D 87.500 216 26 1 1 216 548619111 548618897 1.430000e-61 248.0
24 TraesCS2A01G327200 chr7D 93.827 81 5 0 3 83 548619194 548619114 9.060000e-24 122.0
25 TraesCS2A01G327200 chr1D 83.898 472 47 15 205 660 492433952 492433494 2.220000e-114 424.0
26 TraesCS2A01G327200 chr1D 93.827 81 5 0 3 83 492434302 492434222 9.060000e-24 122.0
27 TraesCS2A01G327200 chr1D 82.278 79 11 3 7 83 492434384 492434307 1.550000e-06 65.8
28 TraesCS2A01G327200 chr6D 81.435 474 42 24 205 663 345785236 345784794 4.940000e-91 346.0
29 TraesCS2A01G327200 chr6D 87.963 216 25 1 1 216 345785524 345785310 3.080000e-63 254.0
30 TraesCS2A01G327200 chr6D 95.062 81 4 0 3 83 345785607 345785527 1.950000e-25 128.0
31 TraesCS2A01G327200 chr6D 95.000 40 2 0 44 83 345785651 345785612 5.570000e-06 63.9
32 TraesCS2A01G327200 chr6D 100.000 28 0 0 107 134 340437110 340437137 1.200000e-02 52.8
33 TraesCS2A01G327200 chr7B 79.359 499 68 21 184 661 667177881 667178365 1.080000e-82 318.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G327200 chr2A 558647168 558653818 6650 True 12283.000000 12283 100.000000 1 6651 1 chr2A.!!$R2 6650
1 TraesCS2A01G327200 chr2B 506099076 506104647 5571 False 2811.366667 5570 95.991667 808 6310 3 chr2B.!!$F2 5502
2 TraesCS2A01G327200 chr2D 429052859 429058441 5582 False 2082.250000 4250 92.511750 661 6311 4 chr2D.!!$F1 5650
3 TraesCS2A01G327200 chr7D 548618364 548619194 830 True 265.000000 425 88.419667 1 660 3 chr7D.!!$R1 659
4 TraesCS2A01G327200 chr1D 492433494 492434384 890 True 203.933333 424 86.667667 3 660 3 chr1D.!!$R1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 650 0.035630 CTCTGTGCCCCTTCCTTCAG 60.036 60.000 0.00 0.0 0.00 3.02 F
583 836 0.035739 GGTGCGTGGGGAGAAGTAAA 59.964 55.000 0.00 0.0 0.00 2.01 F
1770 2130 0.179124 GACTTAGCCTCTGTCCTGCG 60.179 60.000 0.00 0.0 0.00 5.18 F
1833 2193 1.346068 GATCAGGTCCAGATAGGGCAC 59.654 57.143 0.00 0.0 46.80 5.01 F
3004 3395 4.021807 TCCGACTGTTGCAGTTTCACTATA 60.022 41.667 3.16 0.0 45.44 1.31 F
4746 5231 1.208535 CGTAACATGCCCAGGAAGGTA 59.791 52.381 0.00 0.0 34.66 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 2115 0.255033 TAGTCGCAGGACAGAGGCTA 59.745 55.00 0.0 0.0 45.92 3.93 R
1833 2193 1.446907 GACTTCTGCCATGTCTGGTG 58.553 55.00 0.0 0.0 45.10 4.17 R
3410 3802 7.615582 GGTACTTGTTACCCAATACCTAAAC 57.384 40.00 0.0 0.0 44.41 2.01 R
3705 4097 9.679661 TGTCCTTTGTAATTTGATGCTCTATTA 57.320 29.63 0.0 0.0 0.00 0.98 R
4824 5309 1.508632 GCTTTGCGGAGACAGTGTAA 58.491 50.00 0.0 0.0 0.00 2.41 R
6421 6927 0.036765 CCAATTTCCTCGGTCGTCCA 60.037 55.00 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 120 3.806316 ATCGCTGGTACAAAAAGAACG 57.194 42.857 0.00 0.00 38.70 3.95
41 122 2.798283 TCGCTGGTACAAAAAGAACGAG 59.202 45.455 0.00 0.00 38.70 4.18
83 164 2.663826 TGTTGGTTCCAGCAAAACAC 57.336 45.000 5.94 0.00 37.34 3.32
84 165 2.175202 TGTTGGTTCCAGCAAAACACT 58.825 42.857 5.94 0.00 37.34 3.55
85 166 2.165437 TGTTGGTTCCAGCAAAACACTC 59.835 45.455 5.94 0.00 37.34 3.51
116 282 1.039856 GCAAACCTGGTCATGGTTGT 58.960 50.000 0.00 0.00 45.99 3.32
127 293 0.394352 CATGGTTGTAGCACTCCCCC 60.394 60.000 0.00 0.00 0.00 5.40
128 294 1.910580 ATGGTTGTAGCACTCCCCCG 61.911 60.000 0.00 0.00 0.00 5.73
129 295 2.590114 GGTTGTAGCACTCCCCCGT 61.590 63.158 0.00 0.00 0.00 5.28
130 296 1.079336 GTTGTAGCACTCCCCCGTC 60.079 63.158 0.00 0.00 0.00 4.79
131 297 2.642254 TTGTAGCACTCCCCCGTCG 61.642 63.158 0.00 0.00 0.00 5.12
174 340 2.293122 CGATCACCAGTTCCAGCAAAAA 59.707 45.455 0.00 0.00 0.00 1.94
180 346 1.300620 GTTCCAGCAAAAACCGGGC 60.301 57.895 6.32 0.00 0.00 6.13
182 348 3.601685 CCAGCAAAAACCGGGCGT 61.602 61.111 6.32 0.00 0.00 5.68
196 362 1.610554 GGGCGTGGTTGTAGCTCCTA 61.611 60.000 0.00 0.00 0.00 2.94
202 368 2.166664 GTGGTTGTAGCTCCTACCTCAG 59.833 54.545 10.96 0.00 36.24 3.35
265 516 4.090057 GTTGCAGCTCGGCCGTTC 62.090 66.667 27.15 17.75 0.00 3.95
287 538 3.333189 CGCCATCGCTGACCATCG 61.333 66.667 0.00 0.00 0.00 3.84
311 563 3.296709 CTCGCCGGCTACCTGTTGT 62.297 63.158 26.68 0.00 0.00 3.32
322 574 1.185618 ACCTGTTGTAGCTCGCTGGA 61.186 55.000 0.85 0.00 0.00 3.86
323 575 0.176680 CCTGTTGTAGCTCGCTGGAT 59.823 55.000 0.85 0.00 0.00 3.41
328 580 3.147595 TAGCTCGCTGGATGCCGT 61.148 61.111 0.85 0.00 38.78 5.68
334 586 2.507944 GCTGGATGCCGTCTCCAT 59.492 61.111 0.00 0.00 41.83 3.41
340 592 2.300152 TGGATGCCGTCTCCATAATCTC 59.700 50.000 0.00 0.00 37.87 2.75
341 593 2.354203 GGATGCCGTCTCCATAATCTCC 60.354 54.545 0.00 0.00 32.72 3.71
342 594 1.788229 TGCCGTCTCCATAATCTCCA 58.212 50.000 0.00 0.00 0.00 3.86
343 595 1.412710 TGCCGTCTCCATAATCTCCAC 59.587 52.381 0.00 0.00 0.00 4.02
344 596 1.603172 GCCGTCTCCATAATCTCCACG 60.603 57.143 0.00 0.00 0.00 4.94
345 597 1.000163 CCGTCTCCATAATCTCCACGG 60.000 57.143 0.00 0.00 39.38 4.94
346 598 1.681793 CGTCTCCATAATCTCCACGGT 59.318 52.381 0.00 0.00 0.00 4.83
347 599 2.287668 CGTCTCCATAATCTCCACGGTC 60.288 54.545 0.00 0.00 0.00 4.79
348 600 1.954382 TCTCCATAATCTCCACGGTCG 59.046 52.381 0.00 0.00 0.00 4.79
371 623 3.544167 CTCGCCCCGACTCGCATAG 62.544 68.421 0.00 0.00 0.00 2.23
379 631 1.142748 GACTCGCATAGCAGCACCT 59.857 57.895 0.00 0.00 0.00 4.00
381 633 1.326213 ACTCGCATAGCAGCACCTCT 61.326 55.000 0.00 0.00 0.00 3.69
397 650 0.035630 CTCTGTGCCCCTTCCTTCAG 60.036 60.000 0.00 0.00 0.00 3.02
408 661 2.169352 CCTTCCTTCAGACCGATGTGAT 59.831 50.000 0.00 0.00 0.00 3.06
435 688 3.046374 GCTAGTGGAGAGGGGGATTTAA 58.954 50.000 0.00 0.00 0.00 1.52
440 693 2.584965 TGGAGAGGGGGATTTAATTGCA 59.415 45.455 0.00 0.00 0.00 4.08
452 705 6.453092 GGATTTAATTGCATTGGAGATCAGG 58.547 40.000 0.00 0.00 0.00 3.86
461 714 3.311167 TTGGAGATCAGGAGAGGAGAG 57.689 52.381 0.00 0.00 0.00 3.20
468 721 1.653918 TCAGGAGAGGAGAGGGGATTT 59.346 52.381 0.00 0.00 0.00 2.17
486 739 0.037303 TTTGCAAGGAGAGGAGCAGG 59.963 55.000 0.00 0.00 38.35 4.85
487 740 2.124778 GCAAGGAGAGGAGCAGGC 60.125 66.667 0.00 0.00 0.00 4.85
490 743 1.915769 AAGGAGAGGAGCAGGCGTT 60.916 57.895 0.00 0.00 0.00 4.84
491 744 1.484444 AAGGAGAGGAGCAGGCGTTT 61.484 55.000 0.00 0.00 0.00 3.60
495 748 2.970974 GAGGAGCAGGCGTTTGTGC 61.971 63.158 0.00 0.00 40.17 4.57
517 770 2.089408 AGATGGGGATGGGGAATGAGTA 60.089 50.000 0.00 0.00 0.00 2.59
518 771 2.295269 TGGGGATGGGGAATGAGTAA 57.705 50.000 0.00 0.00 0.00 2.24
548 801 1.696097 GGGCGAAGGGATAAGGCAGA 61.696 60.000 0.00 0.00 0.00 4.26
552 805 1.482593 CGAAGGGATAAGGCAGACACT 59.517 52.381 0.00 0.00 0.00 3.55
553 806 2.693591 CGAAGGGATAAGGCAGACACTA 59.306 50.000 0.00 0.00 0.00 2.74
555 808 2.683768 AGGGATAAGGCAGACACTAGG 58.316 52.381 0.00 0.00 0.00 3.02
556 809 1.070914 GGGATAAGGCAGACACTAGGC 59.929 57.143 0.00 0.00 0.00 3.93
557 810 1.269831 GGATAAGGCAGACACTAGGCG 60.270 57.143 0.00 0.00 35.18 5.52
558 811 1.409427 GATAAGGCAGACACTAGGCGT 59.591 52.381 0.00 0.00 35.18 5.68
580 833 4.003788 CGGTGCGTGGGGAGAAGT 62.004 66.667 0.00 0.00 0.00 3.01
582 835 1.675219 GGTGCGTGGGGAGAAGTAA 59.325 57.895 0.00 0.00 0.00 2.24
583 836 0.035739 GGTGCGTGGGGAGAAGTAAA 59.964 55.000 0.00 0.00 0.00 2.01
584 837 1.439679 GTGCGTGGGGAGAAGTAAAG 58.560 55.000 0.00 0.00 0.00 1.85
585 838 1.001633 GTGCGTGGGGAGAAGTAAAGA 59.998 52.381 0.00 0.00 0.00 2.52
586 839 1.695242 TGCGTGGGGAGAAGTAAAGAA 59.305 47.619 0.00 0.00 0.00 2.52
587 840 2.105134 TGCGTGGGGAGAAGTAAAGAAA 59.895 45.455 0.00 0.00 0.00 2.52
588 841 3.143728 GCGTGGGGAGAAGTAAAGAAAA 58.856 45.455 0.00 0.00 0.00 2.29
589 842 3.188667 GCGTGGGGAGAAGTAAAGAAAAG 59.811 47.826 0.00 0.00 0.00 2.27
590 843 4.638304 CGTGGGGAGAAGTAAAGAAAAGA 58.362 43.478 0.00 0.00 0.00 2.52
591 844 4.691216 CGTGGGGAGAAGTAAAGAAAAGAG 59.309 45.833 0.00 0.00 0.00 2.85
593 846 4.011023 GGGGAGAAGTAAAGAAAAGAGGC 58.989 47.826 0.00 0.00 0.00 4.70
594 847 3.685272 GGGAGAAGTAAAGAAAAGAGGCG 59.315 47.826 0.00 0.00 0.00 5.52
596 849 3.075148 AGAAGTAAAGAAAAGAGGCGGC 58.925 45.455 0.00 0.00 0.00 6.53
597 850 2.861147 AGTAAAGAAAAGAGGCGGCT 57.139 45.000 13.09 13.09 0.00 5.52
599 852 3.597255 AGTAAAGAAAAGAGGCGGCTAC 58.403 45.455 13.24 5.85 0.00 3.58
600 853 2.561478 AAAGAAAAGAGGCGGCTACA 57.439 45.000 13.24 0.00 0.00 2.74
631 899 4.735132 CGACCGGCCGAAGCTTCA 62.735 66.667 30.73 0.00 39.73 3.02
660 928 1.268625 GCCGATTTCAAACGTTTCCCT 59.731 47.619 11.37 0.00 0.00 4.20
661 929 2.287970 GCCGATTTCAAACGTTTCCCTT 60.288 45.455 11.37 0.00 0.00 3.95
662 930 3.058085 GCCGATTTCAAACGTTTCCCTTA 60.058 43.478 11.37 0.00 0.00 2.69
663 931 4.469552 CCGATTTCAAACGTTTCCCTTAC 58.530 43.478 11.37 1.02 0.00 2.34
664 932 4.023878 CCGATTTCAAACGTTTCCCTTACA 60.024 41.667 11.37 0.00 0.00 2.41
665 933 5.505985 CCGATTTCAAACGTTTCCCTTACAA 60.506 40.000 11.37 0.00 0.00 2.41
774 1043 6.783708 ACTTCTAATTACAGGACTCCAGAG 57.216 41.667 0.00 0.00 0.00 3.35
975 1244 2.757124 CCCCCTTCCCCTCCATTCG 61.757 68.421 0.00 0.00 0.00 3.34
988 1257 0.471617 CCATTCGCCCTCTCCATCTT 59.528 55.000 0.00 0.00 0.00 2.40
1054 1333 3.050275 GCCTGCCCGTGTTCTGTC 61.050 66.667 0.00 0.00 0.00 3.51
1167 1457 3.414700 CCGAGTGTTGCCGCAGTC 61.415 66.667 0.00 3.22 35.93 3.51
1193 1483 8.500753 TGTAATATTTGCTAGGTAGTGGTTTG 57.499 34.615 0.00 0.00 0.00 2.93
1216 1506 5.356751 TGAAGGGTGGAATTGACGATAAATG 59.643 40.000 0.00 0.00 0.00 2.32
1223 1513 6.315393 GTGGAATTGACGATAAATGTACCTGT 59.685 38.462 0.00 0.00 0.00 4.00
1232 1522 7.163441 ACGATAAATGTACCTGTAGTTTGGTT 58.837 34.615 0.00 0.00 37.74 3.67
1251 1541 4.280677 TGGTTTGGATTTCTGTGCCTTTAG 59.719 41.667 0.00 0.00 0.00 1.85
1292 1582 2.791560 CTGATTAGAACCGTCTCATGCG 59.208 50.000 0.00 0.00 35.12 4.73
1293 1583 2.165641 TGATTAGAACCGTCTCATGCGT 59.834 45.455 0.00 0.00 35.12 5.24
1413 1703 1.601759 CAGGCCAGGTGGTGACTTG 60.602 63.158 5.01 0.00 37.57 3.16
1521 1852 2.168728 GGGTCCTTGTAACAGCTAGAGG 59.831 54.545 0.00 0.00 0.00 3.69
1534 1865 3.056250 CAGCTAGAGGACACTGTTCACAT 60.056 47.826 0.00 0.00 0.00 3.21
1666 1997 5.585500 TCGCACAACACATTCTAGTTAAC 57.415 39.130 0.00 0.00 0.00 2.01
1730 2090 0.750546 GCATCAGGCAGCAGATTCCA 60.751 55.000 0.00 0.00 43.97 3.53
1755 2115 6.930667 ACTTTTTGTTATGTGTACCGACTT 57.069 33.333 0.00 0.00 0.00 3.01
1770 2130 0.179124 GACTTAGCCTCTGTCCTGCG 60.179 60.000 0.00 0.00 0.00 5.18
1833 2193 1.346068 GATCAGGTCCAGATAGGGCAC 59.654 57.143 0.00 0.00 46.80 5.01
1909 2271 6.946340 TGGTGAGAATACACATCACTGTTAT 58.054 36.000 4.73 0.00 42.36 1.89
1910 2272 8.073467 TGGTGAGAATACACATCACTGTTATA 57.927 34.615 4.73 0.00 42.36 0.98
3004 3395 4.021807 TCCGACTGTTGCAGTTTCACTATA 60.022 41.667 3.16 0.00 45.44 1.31
3349 3740 9.439537 GTTTCTGTCTCTGTTAATTTTGTTCTC 57.560 33.333 0.00 0.00 0.00 2.87
3410 3802 4.044336 TGTTTCCTGAACTGTGCATTTG 57.956 40.909 0.00 0.00 39.08 2.32
3705 4097 5.380043 CTTTGGCCTCACATGTTATCCTAT 58.620 41.667 3.32 0.00 0.00 2.57
3745 4137 5.751586 ACAAAGGACAAGGAACTAACTTCA 58.248 37.500 0.00 0.00 38.49 3.02
3854 4246 6.460676 GGGGAGAAAATGATTTGTGCAGATAG 60.461 42.308 0.00 0.00 32.68 2.08
4173 4565 6.194235 ACCATGCAAATAATAAAGTCCCTCA 58.806 36.000 0.00 0.00 0.00 3.86
4191 4583 5.186992 TCCCTCATCTCTCGTGAATTAAACA 59.813 40.000 0.00 0.00 0.00 2.83
4265 4657 8.517062 AGTTCCATCTCTCAAGGAAAATTATG 57.483 34.615 0.00 0.00 42.59 1.90
4361 4837 3.826729 GGAGATTAAGGCACAAACTGGTT 59.173 43.478 0.00 0.00 0.00 3.67
4534 5013 7.017551 AGAGCCATGGGTTAACAGATGATAATA 59.982 37.037 19.39 0.00 0.00 0.98
4746 5231 1.208535 CGTAACATGCCCAGGAAGGTA 59.791 52.381 0.00 0.00 34.66 3.08
4807 5292 3.271014 CGCAGCAGCAATCCAAGT 58.729 55.556 0.82 0.00 42.27 3.16
4812 5297 1.610038 CAGCAGCAATCCAAGTTGTCA 59.390 47.619 1.45 0.00 0.00 3.58
4824 5309 3.390521 TTGTCAGCCGAGGCCGAT 61.391 61.111 10.95 0.00 43.17 4.18
4929 5414 2.511145 GAGGAGCTGCTGAAGGCG 60.511 66.667 14.48 0.00 45.43 5.52
5016 5501 3.809279 CACCTTGGTGAAAAGCAATTTCC 59.191 43.478 14.15 4.56 45.67 3.13
5040 5525 1.828595 TGCACAATACCGAGGCTTCTA 59.171 47.619 0.00 0.00 0.00 2.10
5080 5565 8.415950 TTCCATTACCATCATGTGTTACTTTT 57.584 30.769 0.00 0.00 0.00 2.27
5218 5703 5.741388 AAACGCATGGCAAAACAAAAATA 57.259 30.435 0.00 0.00 0.00 1.40
5229 5714 7.226325 TGGCAAAACAAAAATACATCCTTCTTG 59.774 33.333 0.00 0.00 0.00 3.02
5235 5720 6.938030 ACAAAAATACATCCTTCTTGACCGTA 59.062 34.615 0.00 0.00 0.00 4.02
5236 5721 7.119262 ACAAAAATACATCCTTCTTGACCGTAG 59.881 37.037 0.00 0.00 0.00 3.51
5237 5722 5.934402 AATACATCCTTCTTGACCGTAGT 57.066 39.130 0.00 0.00 0.00 2.73
5238 5723 5.934402 ATACATCCTTCTTGACCGTAGTT 57.066 39.130 0.00 0.00 0.00 2.24
5239 5724 4.618920 ACATCCTTCTTGACCGTAGTTT 57.381 40.909 0.00 0.00 0.00 2.66
5240 5725 4.969484 ACATCCTTCTTGACCGTAGTTTT 58.031 39.130 0.00 0.00 0.00 2.43
5241 5726 4.755123 ACATCCTTCTTGACCGTAGTTTTG 59.245 41.667 0.00 0.00 0.00 2.44
5404 5890 2.386661 AGATGCGAAGAACGGAATGT 57.613 45.000 0.00 0.00 46.49 2.71
5579 6065 2.094675 GCCTTGGCATACATTGTGACT 58.905 47.619 6.79 0.00 0.00 3.41
5587 6073 4.273480 GGCATACATTGTGACTATGTGGAC 59.727 45.833 20.08 11.90 36.89 4.02
5620 6106 4.935702 TCCTTTTCTTGTTGCTGTCAATG 58.064 39.130 0.00 0.00 34.29 2.82
5708 6194 5.869753 ATTGATCAACTCTGTGCTTGTAC 57.130 39.130 11.07 0.00 0.00 2.90
5712 6198 3.728845 TCAACTCTGTGCTTGTACCTTC 58.271 45.455 0.00 0.00 0.00 3.46
5714 6200 1.687123 ACTCTGTGCTTGTACCTTCGT 59.313 47.619 0.00 0.00 0.00 3.85
5872 6358 7.041372 GGAAGTGAAAGTGTTATGCTAAAGTGA 60.041 37.037 0.00 0.00 0.00 3.41
5878 6364 3.432252 GTGTTATGCTAAAGTGAGTGCGT 59.568 43.478 0.00 0.00 0.00 5.24
6146 6651 2.476619 CTGTAGTCCGCTGTTTTCTGTG 59.523 50.000 0.00 0.00 0.00 3.66
6183 6688 4.292186 AGCATAAGCATACCCGATGAAT 57.708 40.909 0.00 0.00 45.49 2.57
6190 6695 4.384056 AGCATACCCGATGAATTGAAGAG 58.616 43.478 0.00 0.00 37.82 2.85
6233 6739 4.158025 AGCAACGCTAGTAGTCTTGTGTAT 59.842 41.667 0.00 0.00 38.66 2.29
6312 6818 9.528018 ACAAATACACTTTTGTAGAAATTGGTG 57.472 29.630 0.98 10.06 45.48 4.17
6313 6819 9.743057 CAAATACACTTTTGTAGAAATTGGTGA 57.257 29.630 15.27 5.31 41.62 4.02
6315 6821 9.912634 AATACACTTTTGTAGAAATTGGTGATG 57.087 29.630 15.27 0.00 41.62 3.07
6316 6822 6.748132 ACACTTTTGTAGAAATTGGTGATGG 58.252 36.000 15.27 0.00 32.60 3.51
6317 6823 6.323739 ACACTTTTGTAGAAATTGGTGATGGT 59.676 34.615 15.27 0.00 32.60 3.55
6318 6824 6.642131 CACTTTTGTAGAAATTGGTGATGGTG 59.358 38.462 7.40 0.00 0.00 4.17
6319 6825 4.782019 TTGTAGAAATTGGTGATGGTGC 57.218 40.909 0.00 0.00 0.00 5.01
6320 6826 4.032960 TGTAGAAATTGGTGATGGTGCT 57.967 40.909 0.00 0.00 0.00 4.40
6321 6827 4.406456 TGTAGAAATTGGTGATGGTGCTT 58.594 39.130 0.00 0.00 0.00 3.91
6322 6828 4.458989 TGTAGAAATTGGTGATGGTGCTTC 59.541 41.667 0.00 0.00 0.00 3.86
6323 6829 3.771216 AGAAATTGGTGATGGTGCTTCT 58.229 40.909 0.00 0.00 0.00 2.85
6324 6830 3.508793 AGAAATTGGTGATGGTGCTTCTG 59.491 43.478 0.00 0.00 0.00 3.02
6325 6831 2.592102 ATTGGTGATGGTGCTTCTGT 57.408 45.000 0.00 0.00 0.00 3.41
6326 6832 3.719268 ATTGGTGATGGTGCTTCTGTA 57.281 42.857 0.00 0.00 0.00 2.74
6327 6833 2.472695 TGGTGATGGTGCTTCTGTAC 57.527 50.000 0.00 0.00 0.00 2.90
6328 6834 1.337728 TGGTGATGGTGCTTCTGTACG 60.338 52.381 0.00 0.00 0.00 3.67
6329 6835 1.337823 GGTGATGGTGCTTCTGTACGT 60.338 52.381 0.00 0.00 0.00 3.57
6330 6836 2.094390 GGTGATGGTGCTTCTGTACGTA 60.094 50.000 0.00 0.00 0.00 3.57
6331 6837 3.430374 GGTGATGGTGCTTCTGTACGTAT 60.430 47.826 0.00 0.00 0.00 3.06
6332 6838 4.181578 GTGATGGTGCTTCTGTACGTATT 58.818 43.478 0.00 0.00 0.00 1.89
6333 6839 4.630069 GTGATGGTGCTTCTGTACGTATTT 59.370 41.667 0.00 0.00 0.00 1.40
6334 6840 4.629634 TGATGGTGCTTCTGTACGTATTTG 59.370 41.667 0.00 0.00 0.00 2.32
6335 6841 3.331150 TGGTGCTTCTGTACGTATTTGG 58.669 45.455 0.00 0.00 0.00 3.28
6336 6842 2.095372 GGTGCTTCTGTACGTATTTGGC 59.905 50.000 0.00 1.30 0.00 4.52
6337 6843 1.996898 TGCTTCTGTACGTATTTGGCG 59.003 47.619 0.00 0.00 0.00 5.69
6338 6844 1.997606 GCTTCTGTACGTATTTGGCGT 59.002 47.619 0.00 0.00 45.11 5.68
6339 6845 2.222729 GCTTCTGTACGTATTTGGCGTG 60.223 50.000 0.00 0.00 42.87 5.34
6340 6846 3.247442 CTTCTGTACGTATTTGGCGTGA 58.753 45.455 0.00 0.00 42.87 4.35
6341 6847 2.598589 TCTGTACGTATTTGGCGTGAC 58.401 47.619 0.00 0.00 42.87 3.67
6342 6848 1.657094 CTGTACGTATTTGGCGTGACC 59.343 52.381 0.00 0.00 42.87 4.02
6350 6856 4.121906 TGGCGTGACCAGTGGATA 57.878 55.556 18.40 0.37 46.36 2.59
6351 6857 1.594833 TGGCGTGACCAGTGGATAC 59.405 57.895 18.40 12.94 46.36 2.24
6352 6858 1.153429 GGCGTGACCAGTGGATACC 60.153 63.158 18.40 5.95 38.86 2.73
6353 6859 1.594833 GCGTGACCAGTGGATACCA 59.405 57.895 18.40 5.21 0.00 3.25
6365 6871 3.348647 TGGATACCACATCCACTTGTG 57.651 47.619 1.80 0.00 42.81 3.33
6372 6878 1.609208 ACATCCACTTGTGAGGTTGC 58.391 50.000 1.89 0.00 30.17 4.17
6373 6879 0.883833 CATCCACTTGTGAGGTTGCC 59.116 55.000 1.89 0.00 0.00 4.52
6374 6880 0.478072 ATCCACTTGTGAGGTTGCCA 59.522 50.000 1.89 0.00 0.00 4.92
6375 6881 0.257328 TCCACTTGTGAGGTTGCCAA 59.743 50.000 1.89 0.00 0.00 4.52
6376 6882 1.133513 TCCACTTGTGAGGTTGCCAAT 60.134 47.619 1.89 0.00 0.00 3.16
6377 6883 2.107378 TCCACTTGTGAGGTTGCCAATA 59.893 45.455 1.89 0.00 0.00 1.90
6378 6884 3.091545 CCACTTGTGAGGTTGCCAATAT 58.908 45.455 1.89 0.00 0.00 1.28
6379 6885 3.129287 CCACTTGTGAGGTTGCCAATATC 59.871 47.826 1.89 0.00 0.00 1.63
6380 6886 3.758023 CACTTGTGAGGTTGCCAATATCA 59.242 43.478 0.00 0.00 0.00 2.15
6381 6887 3.758554 ACTTGTGAGGTTGCCAATATCAC 59.241 43.478 14.58 14.58 40.49 3.06
6382 6888 2.722094 TGTGAGGTTGCCAATATCACC 58.278 47.619 17.24 0.00 39.58 4.02
6383 6889 2.024414 GTGAGGTTGCCAATATCACCC 58.976 52.381 11.76 0.00 35.37 4.61
6384 6890 1.064017 TGAGGTTGCCAATATCACCCC 60.064 52.381 0.00 0.00 0.00 4.95
6385 6891 1.006813 AGGTTGCCAATATCACCCCA 58.993 50.000 0.00 0.00 0.00 4.96
6386 6892 1.063717 AGGTTGCCAATATCACCCCAG 60.064 52.381 0.00 0.00 0.00 4.45
6387 6893 1.402787 GTTGCCAATATCACCCCAGG 58.597 55.000 0.00 0.00 0.00 4.45
6388 6894 0.261402 TTGCCAATATCACCCCAGGG 59.739 55.000 0.00 0.00 42.03 4.45
6413 6919 3.070060 CGTCTTCGGCGTGTTAGC 58.930 61.111 6.85 0.00 0.00 3.09
6414 6920 2.774951 CGTCTTCGGCGTGTTAGCG 61.775 63.158 6.85 1.90 38.18 4.26
6415 6921 1.443194 GTCTTCGGCGTGTTAGCGA 60.443 57.895 6.85 0.00 38.18 4.93
6416 6922 1.154093 TCTTCGGCGTGTTAGCGAG 60.154 57.895 6.85 0.00 38.18 5.03
6417 6923 2.789203 CTTCGGCGTGTTAGCGAGC 61.789 63.158 6.85 0.00 38.18 5.03
6418 6924 3.277211 TTCGGCGTGTTAGCGAGCT 62.277 57.895 6.85 2.25 38.18 4.09
6419 6925 3.248171 CGGCGTGTTAGCGAGCTC 61.248 66.667 2.73 2.73 38.18 4.09
6420 6926 2.886124 GGCGTGTTAGCGAGCTCC 60.886 66.667 8.47 0.68 38.18 4.70
6421 6927 2.182030 GCGTGTTAGCGAGCTCCT 59.818 61.111 8.47 8.97 0.00 3.69
6422 6928 2.161486 GCGTGTTAGCGAGCTCCTG 61.161 63.158 8.47 0.00 0.00 3.86
6423 6929 1.517257 CGTGTTAGCGAGCTCCTGG 60.517 63.158 8.47 0.00 0.00 4.45
6424 6930 1.890894 GTGTTAGCGAGCTCCTGGA 59.109 57.895 8.47 0.00 0.00 3.86
6425 6931 0.458716 GTGTTAGCGAGCTCCTGGAC 60.459 60.000 8.47 9.97 0.00 4.02
6426 6932 1.226717 GTTAGCGAGCTCCTGGACG 60.227 63.158 8.47 0.00 0.00 4.79
6427 6933 1.378119 TTAGCGAGCTCCTGGACGA 60.378 57.895 8.47 0.00 0.00 4.20
6428 6934 1.654954 TTAGCGAGCTCCTGGACGAC 61.655 60.000 8.47 1.59 0.00 4.34
6429 6935 4.500116 GCGAGCTCCTGGACGACC 62.500 72.222 8.47 0.00 0.00 4.79
6430 6936 4.180946 CGAGCTCCTGGACGACCG 62.181 72.222 8.47 0.00 39.42 4.79
6431 6937 2.750637 GAGCTCCTGGACGACCGA 60.751 66.667 0.87 0.00 39.42 4.69
6432 6938 2.752238 AGCTCCTGGACGACCGAG 60.752 66.667 0.00 2.10 39.42 4.63
6433 6939 3.827898 GCTCCTGGACGACCGAGG 61.828 72.222 13.37 13.37 39.42 4.63
6434 6940 2.045242 CTCCTGGACGACCGAGGA 60.045 66.667 18.42 18.42 39.41 3.71
6435 6941 1.677966 CTCCTGGACGACCGAGGAA 60.678 63.158 19.39 9.01 40.34 3.36
6436 6942 1.228644 TCCTGGACGACCGAGGAAA 60.229 57.895 17.66 2.62 39.06 3.13
6437 6943 0.613853 TCCTGGACGACCGAGGAAAT 60.614 55.000 17.66 0.00 39.06 2.17
6438 6944 0.249398 CCTGGACGACCGAGGAAATT 59.751 55.000 14.04 0.00 36.94 1.82
6439 6945 1.359848 CTGGACGACCGAGGAAATTG 58.640 55.000 0.00 0.00 39.42 2.32
6440 6946 0.036765 TGGACGACCGAGGAAATTGG 60.037 55.000 0.00 0.00 39.42 3.16
6441 6947 0.248289 GGACGACCGAGGAAATTGGA 59.752 55.000 0.00 0.00 36.15 3.53
6442 6948 1.338389 GGACGACCGAGGAAATTGGAA 60.338 52.381 0.00 0.00 36.15 3.53
6443 6949 1.730612 GACGACCGAGGAAATTGGAAC 59.269 52.381 0.00 0.00 36.15 3.62
6444 6950 1.071071 ACGACCGAGGAAATTGGAACA 59.929 47.619 0.00 0.00 36.15 3.18
6445 6951 2.290071 ACGACCGAGGAAATTGGAACAT 60.290 45.455 0.00 0.00 39.30 2.71
6446 6952 2.351726 CGACCGAGGAAATTGGAACATC 59.648 50.000 0.00 0.00 39.30 3.06
6447 6953 2.683362 GACCGAGGAAATTGGAACATCC 59.317 50.000 0.00 0.00 39.30 3.51
6448 6954 2.041081 ACCGAGGAAATTGGAACATCCA 59.959 45.455 0.00 0.00 46.61 3.41
6461 6967 6.367374 TGGAACATCCAACTACTATCAACA 57.633 37.500 0.00 0.00 45.00 3.33
6462 6968 6.957631 TGGAACATCCAACTACTATCAACAT 58.042 36.000 0.00 0.00 45.00 2.71
6463 6969 7.402054 TGGAACATCCAACTACTATCAACATT 58.598 34.615 0.00 0.00 45.00 2.71
6464 6970 7.888021 TGGAACATCCAACTACTATCAACATTT 59.112 33.333 0.00 0.00 45.00 2.32
6465 6971 8.398665 GGAACATCCAACTACTATCAACATTTC 58.601 37.037 0.00 0.00 36.28 2.17
6466 6972 8.862325 AACATCCAACTACTATCAACATTTCA 57.138 30.769 0.00 0.00 0.00 2.69
6467 6973 9.466497 AACATCCAACTACTATCAACATTTCAT 57.534 29.630 0.00 0.00 0.00 2.57
6468 6974 8.896744 ACATCCAACTACTATCAACATTTCATG 58.103 33.333 0.00 0.00 0.00 3.07
6470 6976 8.492673 TCCAACTACTATCAACATTTCATGTC 57.507 34.615 0.00 0.00 44.07 3.06
6471 6977 8.100164 TCCAACTACTATCAACATTTCATGTCA 58.900 33.333 0.00 0.00 44.07 3.58
6472 6978 8.393366 CCAACTACTATCAACATTTCATGTCAG 58.607 37.037 0.00 0.00 44.07 3.51
6473 6979 8.939929 CAACTACTATCAACATTTCATGTCAGT 58.060 33.333 0.00 0.00 44.07 3.41
6475 6981 9.809096 ACTACTATCAACATTTCATGTCAGTAG 57.191 33.333 16.67 16.67 44.07 2.57
6478 6984 9.322773 ACTATCAACATTTCATGTCAGTAGATG 57.677 33.333 0.00 0.00 44.07 2.90
6479 6985 9.322773 CTATCAACATTTCATGTCAGTAGATGT 57.677 33.333 0.00 0.00 44.07 3.06
6480 6986 7.601073 TCAACATTTCATGTCAGTAGATGTC 57.399 36.000 0.00 0.00 44.07 3.06
6481 6987 7.160726 TCAACATTTCATGTCAGTAGATGTCA 58.839 34.615 0.00 0.00 44.07 3.58
6482 6988 7.825761 TCAACATTTCATGTCAGTAGATGTCAT 59.174 33.333 0.00 0.00 44.07 3.06
6487 6993 7.167535 TTTCATGTCAGTAGATGTCATGGAAA 58.832 34.615 12.76 9.88 44.70 3.13
6488 6994 7.830697 TTTCATGTCAGTAGATGTCATGGAAAT 59.169 33.333 12.76 0.00 44.70 2.17
6489 6995 7.563888 CATGTCAGTAGATGTCATGGAAATT 57.436 36.000 7.05 0.00 45.84 1.82
6490 6996 8.667076 CATGTCAGTAGATGTCATGGAAATTA 57.333 34.615 7.05 0.00 45.84 1.40
6491 6997 9.281371 CATGTCAGTAGATGTCATGGAAATTAT 57.719 33.333 7.05 0.00 45.84 1.28
6492 6998 8.667076 TGTCAGTAGATGTCATGGAAATTATG 57.333 34.615 0.00 0.00 0.00 1.90
6493 6999 8.485392 TGTCAGTAGATGTCATGGAAATTATGA 58.515 33.333 0.00 0.00 32.44 2.15
6494 7000 9.330063 GTCAGTAGATGTCATGGAAATTATGAA 57.670 33.333 0.00 0.00 36.41 2.57
6495 7001 9.551734 TCAGTAGATGTCATGGAAATTATGAAG 57.448 33.333 0.00 0.00 36.41 3.02
6496 7002 9.551734 CAGTAGATGTCATGGAAATTATGAAGA 57.448 33.333 0.00 0.00 36.41 2.87
6500 7006 9.636789 AGATGTCATGGAAATTATGAAGATCAA 57.363 29.630 0.00 0.00 36.41 2.57
6501 7007 9.894783 GATGTCATGGAAATTATGAAGATCAAG 57.105 33.333 0.00 0.00 36.41 3.02
6502 7008 8.229253 TGTCATGGAAATTATGAAGATCAAGG 57.771 34.615 0.00 0.00 36.41 3.61
6503 7009 7.835682 TGTCATGGAAATTATGAAGATCAAGGT 59.164 33.333 0.00 0.00 36.41 3.50
6504 7010 8.133627 GTCATGGAAATTATGAAGATCAAGGTG 58.866 37.037 0.00 0.00 36.41 4.00
6505 7011 7.286087 TCATGGAAATTATGAAGATCAAGGTGG 59.714 37.037 0.00 0.00 31.98 4.61
6506 7012 6.493166 TGGAAATTATGAAGATCAAGGTGGT 58.507 36.000 0.00 0.00 0.00 4.16
6507 7013 6.377996 TGGAAATTATGAAGATCAAGGTGGTG 59.622 38.462 0.00 0.00 0.00 4.17
6508 7014 5.841957 AATTATGAAGATCAAGGTGGTGC 57.158 39.130 0.00 0.00 0.00 5.01
6509 7015 2.134789 ATGAAGATCAAGGTGGTGCC 57.865 50.000 0.00 0.00 37.58 5.01
6510 7016 0.770499 TGAAGATCAAGGTGGTGCCA 59.230 50.000 0.00 0.00 40.61 4.92
6511 7017 1.168714 GAAGATCAAGGTGGTGCCAC 58.831 55.000 12.66 12.66 45.49 5.01
6532 7038 4.917998 CACGGTTGGACAGAGATATTATCG 59.082 45.833 0.00 0.00 0.00 2.92
6533 7039 3.921021 CGGTTGGACAGAGATATTATCGC 59.079 47.826 0.00 0.00 0.00 4.58
6534 7040 4.321304 CGGTTGGACAGAGATATTATCGCT 60.321 45.833 4.30 4.30 40.16 4.93
6535 7041 5.542779 GGTTGGACAGAGATATTATCGCTT 58.457 41.667 7.15 0.90 37.32 4.68
6536 7042 5.406780 GGTTGGACAGAGATATTATCGCTTG 59.593 44.000 7.15 6.35 37.32 4.01
6537 7043 5.139435 TGGACAGAGATATTATCGCTTGG 57.861 43.478 7.15 1.28 37.32 3.61
6538 7044 4.021104 TGGACAGAGATATTATCGCTTGGG 60.021 45.833 7.15 0.66 37.32 4.12
6539 7045 3.929610 GACAGAGATATTATCGCTTGGGC 59.070 47.826 7.15 0.00 37.32 5.36
6557 7063 4.625800 GCCTGAGCGTTCTGGATT 57.374 55.556 25.73 0.00 43.19 3.01
6558 7064 2.093216 GCCTGAGCGTTCTGGATTG 58.907 57.895 25.73 3.05 43.19 2.67
6559 7065 0.674895 GCCTGAGCGTTCTGGATTGT 60.675 55.000 25.73 0.00 43.19 2.71
6560 7066 1.813513 CCTGAGCGTTCTGGATTGTT 58.186 50.000 18.49 0.00 43.19 2.83
6561 7067 1.734465 CCTGAGCGTTCTGGATTGTTC 59.266 52.381 18.49 0.00 43.19 3.18
6562 7068 2.416747 CTGAGCGTTCTGGATTGTTCA 58.583 47.619 0.00 0.00 0.00 3.18
6563 7069 2.143122 TGAGCGTTCTGGATTGTTCAC 58.857 47.619 0.00 0.00 0.00 3.18
6564 7070 2.143122 GAGCGTTCTGGATTGTTCACA 58.857 47.619 0.00 0.00 0.00 3.58
6565 7071 2.146342 AGCGTTCTGGATTGTTCACAG 58.854 47.619 0.00 0.00 0.00 3.66
6566 7072 1.873591 GCGTTCTGGATTGTTCACAGT 59.126 47.619 0.00 0.00 34.02 3.55
6567 7073 2.096218 GCGTTCTGGATTGTTCACAGTC 60.096 50.000 0.00 0.00 34.02 3.51
6571 7077 3.927555 GGATTGTTCACAGTCCGGA 57.072 52.632 0.00 0.00 41.79 5.14
6572 7078 1.726853 GGATTGTTCACAGTCCGGAG 58.273 55.000 3.06 0.00 41.79 4.63
6573 7079 1.002087 GGATTGTTCACAGTCCGGAGT 59.998 52.381 3.06 4.57 41.79 3.85
6574 7080 2.069273 GATTGTTCACAGTCCGGAGTG 58.931 52.381 33.15 33.15 37.75 3.51
6575 7081 0.531974 TTGTTCACAGTCCGGAGTGC 60.532 55.000 34.37 20.57 35.76 4.40
6576 7082 1.367840 GTTCACAGTCCGGAGTGCT 59.632 57.895 34.37 20.71 35.76 4.40
6577 7083 0.249911 GTTCACAGTCCGGAGTGCTT 60.250 55.000 34.37 17.01 35.76 3.91
6578 7084 1.000506 GTTCACAGTCCGGAGTGCTTA 59.999 52.381 34.37 19.51 35.76 3.09
6579 7085 1.557099 TCACAGTCCGGAGTGCTTAT 58.443 50.000 34.37 15.92 35.76 1.73
6580 7086 1.476891 TCACAGTCCGGAGTGCTTATC 59.523 52.381 34.37 7.78 35.76 1.75
6581 7087 1.204704 CACAGTCCGGAGTGCTTATCA 59.795 52.381 34.37 0.00 35.19 2.15
6582 7088 2.111384 ACAGTCCGGAGTGCTTATCAT 58.889 47.619 34.37 14.12 35.19 2.45
6583 7089 2.101582 ACAGTCCGGAGTGCTTATCATC 59.898 50.000 34.37 5.68 35.19 2.92
6584 7090 2.363680 CAGTCCGGAGTGCTTATCATCT 59.636 50.000 25.80 1.37 0.00 2.90
6585 7091 3.570125 CAGTCCGGAGTGCTTATCATCTA 59.430 47.826 25.80 0.00 0.00 1.98
6586 7092 4.219507 CAGTCCGGAGTGCTTATCATCTAT 59.780 45.833 25.80 0.00 0.00 1.98
6587 7093 4.461081 AGTCCGGAGTGCTTATCATCTATC 59.539 45.833 12.08 0.00 0.00 2.08
6588 7094 4.218635 GTCCGGAGTGCTTATCATCTATCA 59.781 45.833 3.06 0.00 0.00 2.15
6589 7095 5.019470 TCCGGAGTGCTTATCATCTATCAT 58.981 41.667 0.00 0.00 0.00 2.45
6590 7096 6.095580 GTCCGGAGTGCTTATCATCTATCATA 59.904 42.308 3.06 0.00 0.00 2.15
6591 7097 6.836007 TCCGGAGTGCTTATCATCTATCATAT 59.164 38.462 0.00 0.00 0.00 1.78
6592 7098 6.922407 CCGGAGTGCTTATCATCTATCATATG 59.078 42.308 0.00 0.00 0.00 1.78
6593 7099 7.201857 CCGGAGTGCTTATCATCTATCATATGA 60.202 40.741 8.10 8.10 37.73 2.15
6594 7100 8.358895 CGGAGTGCTTATCATCTATCATATGAT 58.641 37.037 21.50 21.50 44.33 2.45
6595 7101 9.478768 GGAGTGCTTATCATCTATCATATGATG 57.521 37.037 25.44 15.94 42.58 3.07
6605 7111 8.411683 TCATCTATCATATGATGAGATTCACCG 58.588 37.037 25.44 15.58 42.58 4.94
6606 7112 7.709149 TCTATCATATGATGAGATTCACCGT 57.291 36.000 25.44 0.54 43.53 4.83
6607 7113 7.766283 TCTATCATATGATGAGATTCACCGTC 58.234 38.462 25.44 0.00 43.53 4.79
6608 7114 5.789643 TCATATGATGAGATTCACCGTCA 57.210 39.130 0.00 4.26 33.59 4.35
6609 7115 5.776744 TCATATGATGAGATTCACCGTCAG 58.223 41.667 0.00 0.00 33.59 3.51
6610 7116 5.536161 TCATATGATGAGATTCACCGTCAGA 59.464 40.000 0.00 3.77 33.59 3.27
6611 7117 3.510388 TGATGAGATTCACCGTCAGAC 57.490 47.619 0.00 0.00 0.00 3.51
6612 7118 3.092301 TGATGAGATTCACCGTCAGACT 58.908 45.455 0.00 0.00 0.00 3.24
6613 7119 4.270008 TGATGAGATTCACCGTCAGACTA 58.730 43.478 0.00 0.00 0.00 2.59
6614 7120 4.096532 TGATGAGATTCACCGTCAGACTAC 59.903 45.833 0.00 0.00 0.00 2.73
6615 7121 3.418047 TGAGATTCACCGTCAGACTACA 58.582 45.455 0.00 0.00 0.00 2.74
6616 7122 3.440522 TGAGATTCACCGTCAGACTACAG 59.559 47.826 0.00 0.00 0.00 2.74
6617 7123 3.422796 AGATTCACCGTCAGACTACAGT 58.577 45.455 0.00 0.00 0.00 3.55
6618 7124 3.440872 AGATTCACCGTCAGACTACAGTC 59.559 47.826 0.91 0.91 45.08 3.51
6629 7135 3.241783 GACTACAGTCGCATCGAGTAG 57.758 52.381 11.53 11.53 37.44 2.57
6630 7136 1.941294 ACTACAGTCGCATCGAGTAGG 59.059 52.381 15.26 1.94 38.25 3.18
6631 7137 1.264557 CTACAGTCGCATCGAGTAGGG 59.735 57.143 0.00 0.00 37.44 3.53
6632 7138 1.299468 CAGTCGCATCGAGTAGGGC 60.299 63.158 0.00 0.00 37.44 5.19
6633 7139 1.753078 AGTCGCATCGAGTAGGGCA 60.753 57.895 0.00 0.00 37.79 5.36
6634 7140 1.589196 GTCGCATCGAGTAGGGCAC 60.589 63.158 0.00 0.00 36.23 5.01
6635 7141 2.955751 GTCGCATCGAGTAGGGCACC 62.956 65.000 0.00 0.00 43.84 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 98 4.273969 TCGTTCTTTTTGTACCAGCGATTT 59.726 37.500 0.00 0.00 0.00 2.17
32 113 3.467803 CTTCCACCAGAACTCGTTCTTT 58.532 45.455 9.47 0.00 46.95 2.52
39 120 4.301628 CAAAAATGCTTCCACCAGAACTC 58.698 43.478 0.00 0.00 0.00 3.01
41 122 3.069443 TCCAAAAATGCTTCCACCAGAAC 59.931 43.478 0.00 0.00 0.00 3.01
83 164 1.301401 TTTGCTGGAACCGACGGAG 60.301 57.895 23.38 8.56 0.00 4.63
84 165 1.595929 GTTTGCTGGAACCGACGGA 60.596 57.895 23.38 0.00 0.00 4.69
85 166 2.613506 GGTTTGCTGGAACCGACGG 61.614 63.158 13.61 13.61 39.68 4.79
109 275 1.910580 CGGGGGAGTGCTACAACCAT 61.911 60.000 0.00 0.00 0.00 3.55
116 282 3.066190 CACGACGGGGGAGTGCTA 61.066 66.667 0.00 0.00 0.00 3.49
154 320 3.552890 GGTTTTTGCTGGAACTGGTGATC 60.553 47.826 0.00 0.00 0.00 2.92
155 321 2.365293 GGTTTTTGCTGGAACTGGTGAT 59.635 45.455 0.00 0.00 0.00 3.06
161 327 1.744320 GCCCGGTTTTTGCTGGAACT 61.744 55.000 0.00 0.00 37.06 3.01
174 340 4.692475 GCTACAACCACGCCCGGT 62.692 66.667 0.00 0.00 42.71 5.28
180 346 1.134560 GAGGTAGGAGCTACAACCACG 59.865 57.143 0.00 0.00 38.58 4.94
182 348 2.457598 CTGAGGTAGGAGCTACAACCA 58.542 52.381 0.00 0.00 38.58 3.67
188 354 4.581105 CCGCTGAGGTAGGAGCTA 57.419 61.111 0.00 0.00 32.70 3.32
202 368 1.644786 GGTGTGGATGCTACAACCGC 61.645 60.000 0.91 0.91 37.33 5.68
272 523 2.969238 GGCGATGGTCAGCGATGG 60.969 66.667 12.91 0.00 43.75 3.51
274 525 1.815421 GTTGGCGATGGTCAGCGAT 60.815 57.895 12.91 0.00 43.75 4.58
279 530 2.264480 CGAGGTTGGCGATGGTCA 59.736 61.111 0.00 0.00 0.00 4.02
302 553 0.530744 CCAGCGAGCTACAACAGGTA 59.469 55.000 0.00 0.00 34.30 3.08
303 554 1.185618 TCCAGCGAGCTACAACAGGT 61.186 55.000 0.00 0.00 37.82 4.00
322 574 2.037772 GTGGAGATTATGGAGACGGCAT 59.962 50.000 0.00 0.00 0.00 4.40
323 575 1.412710 GTGGAGATTATGGAGACGGCA 59.587 52.381 0.00 0.00 0.00 5.69
328 580 1.954382 CGACCGTGGAGATTATGGAGA 59.046 52.381 0.00 0.00 0.00 3.71
334 586 1.813859 CAGGCGACCGTGGAGATTA 59.186 57.895 0.00 0.00 0.00 1.75
361 613 0.873743 GAGGTGCTGCTATGCGAGTC 60.874 60.000 0.00 0.00 35.36 3.36
379 631 0.473694 TCTGAAGGAAGGGGCACAGA 60.474 55.000 0.00 0.00 33.06 3.41
381 633 1.761174 GTCTGAAGGAAGGGGCACA 59.239 57.895 0.00 0.00 0.00 4.57
397 650 1.089920 AGCTGCAAATCACATCGGTC 58.910 50.000 1.02 0.00 0.00 4.79
408 661 0.615331 CCCTCTCCACTAGCTGCAAA 59.385 55.000 1.02 0.00 0.00 3.68
435 688 3.181442 CCTCTCCTGATCTCCAATGCAAT 60.181 47.826 0.00 0.00 0.00 3.56
440 693 3.438372 CCTCTCCTCTCCTGATCTCCAAT 60.438 52.174 0.00 0.00 0.00 3.16
452 705 1.561542 TGCAAAATCCCCTCTCCTCTC 59.438 52.381 0.00 0.00 0.00 3.20
461 714 1.005924 TCCTCTCCTTGCAAAATCCCC 59.994 52.381 0.00 0.00 0.00 4.81
468 721 1.681666 CCTGCTCCTCTCCTTGCAA 59.318 57.895 0.00 0.00 34.90 4.08
486 739 1.315257 ATCCCCATCTGCACAAACGC 61.315 55.000 0.00 0.00 0.00 4.84
487 740 0.452987 CATCCCCATCTGCACAAACG 59.547 55.000 0.00 0.00 0.00 3.60
490 743 1.307309 CCCATCCCCATCTGCACAA 59.693 57.895 0.00 0.00 0.00 3.33
491 744 2.692824 CCCCATCCCCATCTGCACA 61.693 63.158 0.00 0.00 0.00 4.57
495 748 1.075050 CTCATTCCCCATCCCCATCTG 59.925 57.143 0.00 0.00 0.00 2.90
517 770 2.262774 CTTCGCCCCTGAGCTCCATT 62.263 60.000 12.15 0.00 0.00 3.16
518 771 2.688666 TTCGCCCCTGAGCTCCAT 60.689 61.111 12.15 0.00 0.00 3.41
575 828 3.075148 GCCGCCTCTTTTCTTTACTTCT 58.925 45.455 0.00 0.00 0.00 2.85
576 829 3.075148 AGCCGCCTCTTTTCTTTACTTC 58.925 45.455 0.00 0.00 0.00 3.01
578 831 2.861147 AGCCGCCTCTTTTCTTTACT 57.139 45.000 0.00 0.00 0.00 2.24
579 832 3.124806 GTGTAGCCGCCTCTTTTCTTTAC 59.875 47.826 0.00 0.00 0.00 2.01
580 833 3.332034 GTGTAGCCGCCTCTTTTCTTTA 58.668 45.455 0.00 0.00 0.00 1.85
582 835 1.809684 GTGTAGCCGCCTCTTTTCTT 58.190 50.000 0.00 0.00 0.00 2.52
583 836 0.389948 CGTGTAGCCGCCTCTTTTCT 60.390 55.000 0.00 0.00 0.00 2.52
584 837 0.389426 TCGTGTAGCCGCCTCTTTTC 60.389 55.000 0.00 0.00 0.00 2.29
585 838 0.389948 CTCGTGTAGCCGCCTCTTTT 60.390 55.000 0.00 0.00 0.00 2.27
586 839 1.215647 CTCGTGTAGCCGCCTCTTT 59.784 57.895 0.00 0.00 0.00 2.52
587 840 1.977544 ACTCGTGTAGCCGCCTCTT 60.978 57.895 0.00 0.00 0.00 2.85
588 841 2.361357 ACTCGTGTAGCCGCCTCT 60.361 61.111 0.00 0.00 0.00 3.69
589 842 2.202623 CACTCGTGTAGCCGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
590 843 2.675423 TCACTCGTGTAGCCGCCT 60.675 61.111 0.00 0.00 0.00 5.52
591 844 2.202623 CTCACTCGTGTAGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
593 846 2.577112 CGCTCACTCGTGTAGCCG 60.577 66.667 12.51 2.57 33.36 5.52
594 847 2.202623 CCGCTCACTCGTGTAGCC 60.203 66.667 12.51 0.00 33.36 3.93
596 849 2.577112 CGCCGCTCACTCGTGTAG 60.577 66.667 0.00 0.00 0.00 2.74
597 850 4.771356 GCGCCGCTCACTCGTGTA 62.771 66.667 0.00 0.00 0.00 2.90
630 898 2.436646 AAATCGGCGGACCAGCTG 60.437 61.111 6.78 6.78 44.50 4.24
631 899 2.125106 GAAATCGGCGGACCAGCT 60.125 61.111 7.21 0.00 37.29 4.24
634 902 1.570347 CGTTTGAAATCGGCGGACCA 61.570 55.000 7.21 0.00 34.57 4.02
661 929 9.923143 TGAGAGAAACTTTCGATCTATTTTGTA 57.077 29.630 9.21 0.00 34.02 2.41
662 930 8.833231 TGAGAGAAACTTTCGATCTATTTTGT 57.167 30.769 9.21 0.00 34.02 2.83
697 965 7.308782 CGTAAGCCTCAATTACTTCTTTCAT 57.691 36.000 0.00 0.00 32.15 2.57
719 987 0.034896 AAAACGAGAGGACATGGCGT 59.965 50.000 0.00 0.00 36.68 5.68
817 1086 1.274703 AAGGACGGGGCATGATCAGT 61.275 55.000 0.09 0.00 0.00 3.41
861 1130 0.103208 GCACGATGACAGTAGGAGGG 59.897 60.000 0.00 0.00 0.00 4.30
975 1244 1.414866 GGGAGGAAGATGGAGAGGGC 61.415 65.000 0.00 0.00 0.00 5.19
988 1257 3.791076 GGGGATGGGAGGGGAGGA 61.791 72.222 0.00 0.00 0.00 3.71
1054 1333 2.279741 TGATTTCCGCTCGAAAGGATG 58.720 47.619 9.06 0.00 43.64 3.51
1167 1457 8.612619 CAAACCACTACCTAGCAAATATTACAG 58.387 37.037 0.00 0.00 0.00 2.74
1193 1483 5.357032 ACATTTATCGTCAATTCCACCCTTC 59.643 40.000 0.00 0.00 0.00 3.46
1216 1506 6.489022 AGAAATCCAAACCAAACTACAGGTAC 59.511 38.462 0.00 0.00 37.07 3.34
1223 1513 4.038642 GGCACAGAAATCCAAACCAAACTA 59.961 41.667 0.00 0.00 0.00 2.24
1232 1522 6.377146 GGAATACTAAAGGCACAGAAATCCAA 59.623 38.462 0.00 0.00 0.00 3.53
1251 1541 4.570772 TCAGAAGCATAAACGCAGGAATAC 59.429 41.667 0.00 0.00 0.00 1.89
1292 1582 3.783873 GCACACACAAATTTTCGGCAAAC 60.784 43.478 0.00 0.00 0.00 2.93
1293 1583 2.349886 GCACACACAAATTTTCGGCAAA 59.650 40.909 0.00 0.00 0.00 3.68
1521 1852 1.470098 GGCATCCATGTGAACAGTGTC 59.530 52.381 0.00 0.00 0.00 3.67
1666 1997 7.880160 TCATTAACTAGAATGTTCCCCAATG 57.120 36.000 0.00 0.00 37.92 2.82
1720 2071 8.246180 CACATAACAAAAAGTATGGAATCTGCT 58.754 33.333 0.00 0.00 0.00 4.24
1730 2090 8.611654 AAGTCGGTACACATAACAAAAAGTAT 57.388 30.769 0.00 0.00 0.00 2.12
1755 2115 0.255033 TAGTCGCAGGACAGAGGCTA 59.745 55.000 0.00 0.00 45.92 3.93
1833 2193 1.446907 GACTTCTGCCATGTCTGGTG 58.553 55.000 0.00 0.00 45.10 4.17
1909 2271 8.924691 GCACTTTATTCAACATGAAAATGCTTA 58.075 29.630 0.00 0.00 40.12 3.09
1910 2272 7.441760 TGCACTTTATTCAACATGAAAATGCTT 59.558 29.630 0.00 0.00 40.12 3.91
1966 2332 6.852420 ATAATAAGAGGGCATACGCTAAGA 57.148 37.500 0.00 0.00 39.58 2.10
1972 2338 7.307989 CCACAAGAAATAATAAGAGGGCATACG 60.308 40.741 0.00 0.00 0.00 3.06
2636 3027 8.682936 AATGTGATATTTGTATCCTTCAGTCC 57.317 34.615 0.00 0.00 0.00 3.85
3004 3395 8.963725 TGAAAATGTGATTCATCTCAATAAGCT 58.036 29.630 0.00 0.00 35.48 3.74
3410 3802 7.615582 GGTACTTGTTACCCAATACCTAAAC 57.384 40.000 0.00 0.00 44.41 2.01
3705 4097 9.679661 TGTCCTTTGTAATTTGATGCTCTATTA 57.320 29.630 0.00 0.00 0.00 0.98
3854 4246 1.723003 CTACCTTCGTGTAAACGGTGC 59.277 52.381 5.43 0.00 0.00 5.01
4173 4565 9.877178 ATACTTCTTGTTTAATTCACGAGAGAT 57.123 29.630 7.42 4.26 36.27 2.75
4290 4682 9.329913 GCAACAAGTCAACTGTTAGTAAATATG 57.670 33.333 0.00 0.00 0.00 1.78
4291 4683 9.284968 AGCAACAAGTCAACTGTTAGTAAATAT 57.715 29.630 0.00 0.00 0.00 1.28
4292 4684 8.556194 CAGCAACAAGTCAACTGTTAGTAAATA 58.444 33.333 0.00 0.00 0.00 1.40
4293 4685 7.282224 TCAGCAACAAGTCAACTGTTAGTAAAT 59.718 33.333 0.00 0.00 0.00 1.40
4294 4686 6.596106 TCAGCAACAAGTCAACTGTTAGTAAA 59.404 34.615 0.00 0.00 0.00 2.01
4295 4687 6.110033 TCAGCAACAAGTCAACTGTTAGTAA 58.890 36.000 0.00 0.00 0.00 2.24
4296 4688 5.666462 TCAGCAACAAGTCAACTGTTAGTA 58.334 37.500 0.00 0.00 0.00 1.82
4297 4689 4.513442 TCAGCAACAAGTCAACTGTTAGT 58.487 39.130 0.00 0.00 0.00 2.24
4534 5013 6.127101 GGTATTAACCTTTAGTGAGGGCAAT 58.873 40.000 0.00 0.00 43.08 3.56
4812 5297 2.058595 AGTGTAATCGGCCTCGGCT 61.059 57.895 8.00 0.00 41.60 5.52
4824 5309 1.508632 GCTTTGCGGAGACAGTGTAA 58.491 50.000 0.00 0.00 0.00 2.41
4985 5470 3.374042 TTCACCAAGGTGGAAAAGACA 57.626 42.857 18.51 0.00 45.43 3.41
5016 5501 1.137086 AGCCTCGGTATTGTGCACTAG 59.863 52.381 19.41 0.00 0.00 2.57
5140 5625 7.503566 TCTTTTCAATGTATTCCATGATCTCCC 59.496 37.037 0.00 0.00 32.82 4.30
5218 5703 4.618920 AAACTACGGTCAAGAAGGATGT 57.381 40.909 0.00 0.00 0.00 3.06
5229 5714 4.333372 TGGTCAAAACTCAAAACTACGGTC 59.667 41.667 0.00 0.00 0.00 4.79
5235 5720 7.502561 AGCTAGTAATGGTCAAAACTCAAAACT 59.497 33.333 0.00 0.00 0.00 2.66
5236 5721 7.591426 CAGCTAGTAATGGTCAAAACTCAAAAC 59.409 37.037 0.00 0.00 0.00 2.43
5237 5722 7.500892 TCAGCTAGTAATGGTCAAAACTCAAAA 59.499 33.333 0.00 0.00 0.00 2.44
5238 5723 6.995686 TCAGCTAGTAATGGTCAAAACTCAAA 59.004 34.615 0.00 0.00 0.00 2.69
5239 5724 6.426937 GTCAGCTAGTAATGGTCAAAACTCAA 59.573 38.462 0.00 0.00 0.00 3.02
5240 5725 5.932303 GTCAGCTAGTAATGGTCAAAACTCA 59.068 40.000 0.00 0.00 0.00 3.41
5241 5726 5.062308 CGTCAGCTAGTAATGGTCAAAACTC 59.938 44.000 0.00 0.00 0.00 3.01
5331 5817 7.524717 AAAGGCAGTATTAACTTCAACACAT 57.475 32.000 0.00 0.00 31.97 3.21
5404 5890 1.375908 GCCTCTTGCGGACACATCA 60.376 57.895 0.00 0.00 0.00 3.07
5520 6006 2.038426 TGAGAAGCTCCGACCAATGAAA 59.962 45.455 0.00 0.00 0.00 2.69
5579 6065 0.326595 ATTGGCACCACGTCCACATA 59.673 50.000 0.00 0.00 30.97 2.29
5587 6073 1.247567 AGAAAAGGATTGGCACCACG 58.752 50.000 0.00 0.00 0.00 4.94
5620 6106 6.594788 ATGCATAATGTATTTCCATCCACC 57.405 37.500 0.00 0.00 0.00 4.61
5678 6164 7.164122 AGCACAGAGTTGATCAATTAAAGAGA 58.836 34.615 12.12 0.00 0.00 3.10
5679 6165 7.375106 AGCACAGAGTTGATCAATTAAAGAG 57.625 36.000 12.12 1.31 0.00 2.85
5690 6176 4.319177 GAAGGTACAAGCACAGAGTTGAT 58.681 43.478 0.00 0.00 0.00 2.57
5694 6180 1.687123 ACGAAGGTACAAGCACAGAGT 59.313 47.619 0.00 0.00 0.00 3.24
5872 6358 1.672356 GGCATCAAGTCCACGCACT 60.672 57.895 0.00 0.00 0.00 4.40
5878 6364 3.003394 CCACTATTGGCATCAAGTCCA 57.997 47.619 0.00 0.00 35.56 4.02
6146 6651 5.960105 GCTTATGCTACGTTTGAATCAAGAC 59.040 40.000 0.00 0.00 36.03 3.01
6190 6695 9.314501 CGTTGCTTACAGTTTTCTAAATAGAAC 57.685 33.333 2.42 0.00 41.64 3.01
6233 6739 8.026607 CCTCTGGACTTTTCGCAAATAAAATTA 58.973 33.333 0.00 0.00 0.00 1.40
6240 6746 1.541588 GCCTCTGGACTTTTCGCAAAT 59.458 47.619 0.00 0.00 0.00 2.32
6256 6762 7.603024 GGTTTGTACTACTTGATATATGGCCTC 59.397 40.741 3.32 0.00 0.00 4.70
6311 6817 4.465632 AATACGTACAGAAGCACCATCA 57.534 40.909 0.00 0.00 0.00 3.07
6312 6818 4.034048 CCAAATACGTACAGAAGCACCATC 59.966 45.833 0.00 0.00 0.00 3.51
6313 6819 3.938963 CCAAATACGTACAGAAGCACCAT 59.061 43.478 0.00 0.00 0.00 3.55
6314 6820 3.331150 CCAAATACGTACAGAAGCACCA 58.669 45.455 0.00 0.00 0.00 4.17
6315 6821 2.095372 GCCAAATACGTACAGAAGCACC 59.905 50.000 0.00 0.00 0.00 5.01
6316 6822 2.222729 CGCCAAATACGTACAGAAGCAC 60.223 50.000 0.00 0.00 0.00 4.40
6317 6823 1.996898 CGCCAAATACGTACAGAAGCA 59.003 47.619 0.00 0.00 0.00 3.91
6318 6824 1.997606 ACGCCAAATACGTACAGAAGC 59.002 47.619 0.00 0.00 43.02 3.86
6319 6825 3.060363 GTCACGCCAAATACGTACAGAAG 59.940 47.826 0.00 0.00 42.96 2.85
6320 6826 2.988493 GTCACGCCAAATACGTACAGAA 59.012 45.455 0.00 0.00 42.96 3.02
6321 6827 2.598589 GTCACGCCAAATACGTACAGA 58.401 47.619 0.00 0.00 42.96 3.41
6322 6828 1.657094 GGTCACGCCAAATACGTACAG 59.343 52.381 0.00 0.00 42.96 2.74
6323 6829 1.000618 TGGTCACGCCAAATACGTACA 59.999 47.619 0.00 0.00 45.94 2.90
6324 6830 1.712401 TGGTCACGCCAAATACGTAC 58.288 50.000 0.00 0.00 45.94 3.67
6333 6839 1.594833 GTATCCACTGGTCACGCCA 59.405 57.895 0.00 0.00 46.95 5.69
6334 6840 1.153429 GGTATCCACTGGTCACGCC 60.153 63.158 0.00 0.00 37.90 5.68
6335 6841 1.594833 TGGTATCCACTGGTCACGC 59.405 57.895 0.00 0.00 0.00 5.34
6345 6851 3.348647 CACAAGTGGATGTGGTATCCA 57.651 47.619 4.58 4.58 45.47 3.41
6353 6859 1.609208 GCAACCTCACAAGTGGATGT 58.391 50.000 0.00 0.00 34.69 3.06
6354 6860 0.883833 GGCAACCTCACAAGTGGATG 59.116 55.000 0.00 0.00 35.15 3.51
6355 6861 0.478072 TGGCAACCTCACAAGTGGAT 59.522 50.000 0.00 0.00 32.71 3.41
6356 6862 0.257328 TTGGCAACCTCACAAGTGGA 59.743 50.000 0.00 0.00 32.71 4.02
6357 6863 1.331214 ATTGGCAACCTCACAAGTGG 58.669 50.000 0.00 0.00 34.56 4.00
6358 6864 3.758023 TGATATTGGCAACCTCACAAGTG 59.242 43.478 0.00 0.00 0.00 3.16
6359 6865 3.758554 GTGATATTGGCAACCTCACAAGT 59.241 43.478 26.65 4.70 36.94 3.16
6360 6866 3.129287 GGTGATATTGGCAACCTCACAAG 59.871 47.826 29.78 0.00 38.33 3.16
6361 6867 3.088532 GGTGATATTGGCAACCTCACAA 58.911 45.455 29.78 6.03 38.33 3.33
6362 6868 2.620367 GGGTGATATTGGCAACCTCACA 60.620 50.000 29.78 14.59 40.04 3.58
6363 6869 2.024414 GGGTGATATTGGCAACCTCAC 58.976 52.381 24.93 24.93 40.04 3.51
6364 6870 1.064017 GGGGTGATATTGGCAACCTCA 60.064 52.381 0.00 5.73 42.81 3.86
6365 6871 1.064017 TGGGGTGATATTGGCAACCTC 60.064 52.381 0.00 0.00 42.81 3.85
6366 6872 1.006813 TGGGGTGATATTGGCAACCT 58.993 50.000 0.00 0.00 42.81 3.50
6367 6873 1.402787 CTGGGGTGATATTGGCAACC 58.597 55.000 0.00 0.00 42.49 3.77
6368 6874 1.402787 CCTGGGGTGATATTGGCAAC 58.597 55.000 0.00 0.00 0.00 4.17
6369 6875 0.261402 CCCTGGGGTGATATTGGCAA 59.739 55.000 4.27 0.68 0.00 4.52
6370 6876 1.654137 CCCCTGGGGTGATATTGGCA 61.654 60.000 24.54 0.00 38.25 4.92
6371 6877 1.153756 CCCCTGGGGTGATATTGGC 59.846 63.158 24.54 0.00 38.25 4.52
6372 6878 1.153756 GCCCCTGGGGTGATATTGG 59.846 63.158 31.95 4.52 46.51 3.16
6373 6879 4.929807 GCCCCTGGGGTGATATTG 57.070 61.111 31.95 5.29 46.51 1.90
6396 6902 2.774951 CGCTAACACGCCGAAGACG 61.775 63.158 0.00 0.00 39.43 4.18
6397 6903 1.403972 CTCGCTAACACGCCGAAGAC 61.404 60.000 0.00 0.00 0.00 3.01
6398 6904 1.154093 CTCGCTAACACGCCGAAGA 60.154 57.895 0.00 0.00 0.00 2.87
6399 6905 2.789203 GCTCGCTAACACGCCGAAG 61.789 63.158 0.00 0.00 0.00 3.79
6400 6906 2.807895 GCTCGCTAACACGCCGAA 60.808 61.111 0.00 0.00 0.00 4.30
6401 6907 3.678717 GAGCTCGCTAACACGCCGA 62.679 63.158 0.00 0.00 0.00 5.54
6402 6908 3.248171 GAGCTCGCTAACACGCCG 61.248 66.667 0.00 0.00 0.00 6.46
6403 6909 2.886124 GGAGCTCGCTAACACGCC 60.886 66.667 7.83 0.00 0.00 5.68
6404 6910 2.161486 CAGGAGCTCGCTAACACGC 61.161 63.158 7.83 0.00 0.00 5.34
6405 6911 1.517257 CCAGGAGCTCGCTAACACG 60.517 63.158 7.83 0.00 0.00 4.49
6406 6912 0.458716 GTCCAGGAGCTCGCTAACAC 60.459 60.000 7.83 0.00 0.00 3.32
6407 6913 1.890894 GTCCAGGAGCTCGCTAACA 59.109 57.895 7.83 0.00 0.00 2.41
6408 6914 1.226717 CGTCCAGGAGCTCGCTAAC 60.227 63.158 7.83 7.12 0.00 2.34
6409 6915 1.378119 TCGTCCAGGAGCTCGCTAA 60.378 57.895 7.83 0.00 0.00 3.09
6410 6916 2.113433 GTCGTCCAGGAGCTCGCTA 61.113 63.158 7.83 0.00 0.00 4.26
6411 6917 3.444805 GTCGTCCAGGAGCTCGCT 61.445 66.667 7.83 3.11 0.00 4.93
6412 6918 4.500116 GGTCGTCCAGGAGCTCGC 62.500 72.222 7.83 0.47 0.00 5.03
6413 6919 4.180946 CGGTCGTCCAGGAGCTCG 62.181 72.222 7.83 0.00 32.39 5.03
6414 6920 2.750637 TCGGTCGTCCAGGAGCTC 60.751 66.667 4.71 4.71 32.39 4.09
6415 6921 2.752238 CTCGGTCGTCCAGGAGCT 60.752 66.667 0.00 0.00 32.39 4.09
6416 6922 3.827898 CCTCGGTCGTCCAGGAGC 61.828 72.222 10.21 0.00 35.49 4.70
6417 6923 1.248785 TTTCCTCGGTCGTCCAGGAG 61.249 60.000 15.33 7.86 39.91 3.69
6418 6924 0.613853 ATTTCCTCGGTCGTCCAGGA 60.614 55.000 13.08 13.08 38.39 3.86
6419 6925 0.249398 AATTTCCTCGGTCGTCCAGG 59.751 55.000 9.69 9.69 35.10 4.45
6420 6926 1.359848 CAATTTCCTCGGTCGTCCAG 58.640 55.000 0.00 0.00 0.00 3.86
6421 6927 0.036765 CCAATTTCCTCGGTCGTCCA 60.037 55.000 0.00 0.00 0.00 4.02
6422 6928 0.248289 TCCAATTTCCTCGGTCGTCC 59.752 55.000 0.00 0.00 0.00 4.79
6423 6929 1.730612 GTTCCAATTTCCTCGGTCGTC 59.269 52.381 0.00 0.00 0.00 4.20
6424 6930 1.071071 TGTTCCAATTTCCTCGGTCGT 59.929 47.619 0.00 0.00 0.00 4.34
6425 6931 1.803334 TGTTCCAATTTCCTCGGTCG 58.197 50.000 0.00 0.00 0.00 4.79
6426 6932 2.683362 GGATGTTCCAATTTCCTCGGTC 59.317 50.000 0.00 0.00 36.28 4.79
6427 6933 2.041081 TGGATGTTCCAATTTCCTCGGT 59.959 45.455 0.00 0.00 45.00 4.69
6428 6934 2.722094 TGGATGTTCCAATTTCCTCGG 58.278 47.619 0.00 0.00 45.00 4.63
6438 6944 6.367374 TGTTGATAGTAGTTGGATGTTCCA 57.633 37.500 0.00 0.00 46.61 3.53
6439 6945 7.865706 AATGTTGATAGTAGTTGGATGTTCC 57.134 36.000 0.00 0.00 36.96 3.62
6440 6946 8.946085 TGAAATGTTGATAGTAGTTGGATGTTC 58.054 33.333 0.00 0.00 0.00 3.18
6441 6947 8.862325 TGAAATGTTGATAGTAGTTGGATGTT 57.138 30.769 0.00 0.00 0.00 2.71
6442 6948 8.896744 CATGAAATGTTGATAGTAGTTGGATGT 58.103 33.333 0.00 0.00 40.20 3.06
6466 6972 9.281371 CATAATTTCCATGACATCTACTGACAT 57.719 33.333 0.00 0.00 40.22 3.06
6467 6973 8.485392 TCATAATTTCCATGACATCTACTGACA 58.515 33.333 0.00 0.00 34.10 3.58
6468 6974 8.893219 TCATAATTTCCATGACATCTACTGAC 57.107 34.615 0.00 0.00 0.00 3.51
6469 6975 9.551734 CTTCATAATTTCCATGACATCTACTGA 57.448 33.333 0.00 0.00 32.23 3.41
6470 6976 9.551734 TCTTCATAATTTCCATGACATCTACTG 57.448 33.333 0.00 0.00 32.23 2.74
6474 6980 9.636789 TTGATCTTCATAATTTCCATGACATCT 57.363 29.630 0.00 0.00 32.23 2.90
6475 6981 9.894783 CTTGATCTTCATAATTTCCATGACATC 57.105 33.333 0.00 0.00 32.23 3.06
6476 6982 8.857098 CCTTGATCTTCATAATTTCCATGACAT 58.143 33.333 0.00 0.00 32.23 3.06
6477 6983 7.835682 ACCTTGATCTTCATAATTTCCATGACA 59.164 33.333 0.00 0.00 32.23 3.58
6478 6984 8.133627 CACCTTGATCTTCATAATTTCCATGAC 58.866 37.037 0.00 0.00 32.23 3.06
6479 6985 7.286087 CCACCTTGATCTTCATAATTTCCATGA 59.714 37.037 0.00 0.00 0.00 3.07
6480 6986 7.069085 ACCACCTTGATCTTCATAATTTCCATG 59.931 37.037 0.00 0.00 0.00 3.66
6481 6987 7.069085 CACCACCTTGATCTTCATAATTTCCAT 59.931 37.037 0.00 0.00 0.00 3.41
6482 6988 6.377996 CACCACCTTGATCTTCATAATTTCCA 59.622 38.462 0.00 0.00 0.00 3.53
6483 6989 6.681368 GCACCACCTTGATCTTCATAATTTCC 60.681 42.308 0.00 0.00 0.00 3.13
6484 6990 6.268566 GCACCACCTTGATCTTCATAATTTC 58.731 40.000 0.00 0.00 0.00 2.17
6485 6991 5.127682 GGCACCACCTTGATCTTCATAATTT 59.872 40.000 0.00 0.00 34.51 1.82
6486 6992 4.646492 GGCACCACCTTGATCTTCATAATT 59.354 41.667 0.00 0.00 34.51 1.40
6487 6993 4.210331 GGCACCACCTTGATCTTCATAAT 58.790 43.478 0.00 0.00 34.51 1.28
6488 6994 3.010027 TGGCACCACCTTGATCTTCATAA 59.990 43.478 0.00 0.00 40.22 1.90
6489 6995 2.575735 TGGCACCACCTTGATCTTCATA 59.424 45.455 0.00 0.00 40.22 2.15
6490 6996 1.355381 TGGCACCACCTTGATCTTCAT 59.645 47.619 0.00 0.00 40.22 2.57
6491 6997 0.770499 TGGCACCACCTTGATCTTCA 59.230 50.000 0.00 0.00 40.22 3.02
6492 6998 1.168714 GTGGCACCACCTTGATCTTC 58.831 55.000 6.29 0.00 40.79 2.87
6493 6999 0.606401 CGTGGCACCACCTTGATCTT 60.606 55.000 12.86 0.00 43.49 2.40
6494 7000 1.003355 CGTGGCACCACCTTGATCT 60.003 57.895 12.86 0.00 43.49 2.75
6495 7001 2.040544 CCGTGGCACCACCTTGATC 61.041 63.158 12.86 0.00 43.49 2.92
6496 7002 2.034066 CCGTGGCACCACCTTGAT 59.966 61.111 12.86 0.00 43.49 2.57
6497 7003 3.050354 AACCGTGGCACCACCTTGA 62.050 57.895 12.86 0.00 43.49 3.02
6498 7004 2.518349 AACCGTGGCACCACCTTG 60.518 61.111 12.86 5.77 43.49 3.61
6499 7005 2.518349 CAACCGTGGCACCACCTT 60.518 61.111 12.86 3.18 43.49 3.50
6500 7006 4.579384 CCAACCGTGGCACCACCT 62.579 66.667 12.86 0.00 43.49 4.00
6501 7007 4.572571 TCCAACCGTGGCACCACC 62.573 66.667 12.86 0.00 45.54 4.61
6502 7008 3.284449 GTCCAACCGTGGCACCAC 61.284 66.667 12.86 9.88 45.54 4.16
6503 7009 3.765894 CTGTCCAACCGTGGCACCA 62.766 63.158 12.86 1.00 45.54 4.17
6504 7010 2.978010 CTGTCCAACCGTGGCACC 60.978 66.667 12.86 0.00 45.54 5.01
6505 7011 1.961277 CTCTGTCCAACCGTGGCAC 60.961 63.158 7.79 7.79 45.54 5.01
6506 7012 1.480212 ATCTCTGTCCAACCGTGGCA 61.480 55.000 0.00 0.00 45.54 4.92
6507 7013 0.535335 TATCTCTGTCCAACCGTGGC 59.465 55.000 0.00 0.00 45.54 5.01
6509 7015 4.917998 CGATAATATCTCTGTCCAACCGTG 59.082 45.833 0.00 0.00 0.00 4.94
6510 7016 4.558898 GCGATAATATCTCTGTCCAACCGT 60.559 45.833 0.00 0.00 0.00 4.83
6511 7017 3.921021 GCGATAATATCTCTGTCCAACCG 59.079 47.826 0.00 0.00 0.00 4.44
6512 7018 5.140747 AGCGATAATATCTCTGTCCAACC 57.859 43.478 0.00 0.00 0.00 3.77
6513 7019 5.406780 CCAAGCGATAATATCTCTGTCCAAC 59.593 44.000 0.00 0.00 0.00 3.77
6514 7020 5.511373 CCCAAGCGATAATATCTCTGTCCAA 60.511 44.000 0.00 0.00 0.00 3.53
6515 7021 4.021104 CCCAAGCGATAATATCTCTGTCCA 60.021 45.833 0.00 0.00 0.00 4.02
6516 7022 4.499183 CCCAAGCGATAATATCTCTGTCC 58.501 47.826 0.00 0.00 0.00 4.02
6517 7023 3.929610 GCCCAAGCGATAATATCTCTGTC 59.070 47.826 0.00 0.00 0.00 3.51
6518 7024 3.931578 GCCCAAGCGATAATATCTCTGT 58.068 45.455 0.00 0.00 0.00 3.41
6540 7046 0.674895 ACAATCCAGAACGCTCAGGC 60.675 55.000 0.00 0.00 0.00 4.85
6541 7047 1.734465 GAACAATCCAGAACGCTCAGG 59.266 52.381 0.00 0.00 0.00 3.86
6542 7048 2.158449 GTGAACAATCCAGAACGCTCAG 59.842 50.000 0.00 0.00 0.00 3.35
6543 7049 2.143122 GTGAACAATCCAGAACGCTCA 58.857 47.619 0.00 0.00 0.00 4.26
6544 7050 2.143122 TGTGAACAATCCAGAACGCTC 58.857 47.619 0.00 0.00 0.00 5.03
6545 7051 2.146342 CTGTGAACAATCCAGAACGCT 58.854 47.619 0.00 0.00 0.00 5.07
6546 7052 1.873591 ACTGTGAACAATCCAGAACGC 59.126 47.619 0.00 0.00 31.89 4.84
6547 7053 2.480419 GGACTGTGAACAATCCAGAACG 59.520 50.000 6.07 0.00 41.58 3.95
6548 7054 2.480419 CGGACTGTGAACAATCCAGAAC 59.520 50.000 11.18 0.00 42.02 3.01
6549 7055 2.549992 CCGGACTGTGAACAATCCAGAA 60.550 50.000 11.18 0.00 42.02 3.02
6550 7056 1.001974 CCGGACTGTGAACAATCCAGA 59.998 52.381 11.18 0.00 42.02 3.86
6551 7057 1.001974 TCCGGACTGTGAACAATCCAG 59.998 52.381 11.18 0.04 42.02 3.86
6552 7058 1.001974 CTCCGGACTGTGAACAATCCA 59.998 52.381 11.18 0.00 42.02 3.41
6553 7059 1.002087 ACTCCGGACTGTGAACAATCC 59.998 52.381 0.00 0.77 38.79 3.01
6554 7060 2.069273 CACTCCGGACTGTGAACAATC 58.931 52.381 16.81 0.00 36.38 2.67
6555 7061 1.878102 GCACTCCGGACTGTGAACAAT 60.878 52.381 23.95 0.00 36.38 2.71
6556 7062 0.531974 GCACTCCGGACTGTGAACAA 60.532 55.000 23.95 0.00 36.38 2.83
6557 7063 1.069090 GCACTCCGGACTGTGAACA 59.931 57.895 23.95 0.00 36.38 3.18
6558 7064 0.249911 AAGCACTCCGGACTGTGAAC 60.250 55.000 23.95 9.89 36.38 3.18
6559 7065 1.334160 TAAGCACTCCGGACTGTGAA 58.666 50.000 23.95 8.46 36.38 3.18
6560 7066 1.476891 GATAAGCACTCCGGACTGTGA 59.523 52.381 23.95 7.03 36.38 3.58
6561 7067 1.204704 TGATAAGCACTCCGGACTGTG 59.795 52.381 17.31 17.31 37.26 3.66
6562 7068 1.557099 TGATAAGCACTCCGGACTGT 58.443 50.000 0.00 0.00 0.00 3.55
6563 7069 2.363680 AGATGATAAGCACTCCGGACTG 59.636 50.000 0.00 2.75 0.00 3.51
6564 7070 2.672098 AGATGATAAGCACTCCGGACT 58.328 47.619 0.00 0.00 0.00 3.85
6565 7071 4.218635 TGATAGATGATAAGCACTCCGGAC 59.781 45.833 0.00 0.00 0.00 4.79
6566 7072 4.407365 TGATAGATGATAAGCACTCCGGA 58.593 43.478 2.93 2.93 0.00 5.14
6567 7073 4.790765 TGATAGATGATAAGCACTCCGG 57.209 45.455 0.00 0.00 0.00 5.14
6568 7074 7.710896 TCATATGATAGATGATAAGCACTCCG 58.289 38.462 0.00 0.00 0.00 4.63
6569 7075 9.478768 CATCATATGATAGATGATAAGCACTCC 57.521 37.037 17.77 0.00 41.16 3.85
6579 7085 8.411683 CGGTGAATCTCATCATATGATAGATGA 58.588 37.037 23.71 16.79 46.01 2.92
6580 7086 8.196103 ACGGTGAATCTCATCATATGATAGATG 58.804 37.037 23.71 14.33 42.25 2.90
6581 7087 8.303780 ACGGTGAATCTCATCATATGATAGAT 57.696 34.615 17.77 19.55 38.85 1.98
6582 7088 7.394359 TGACGGTGAATCTCATCATATGATAGA 59.606 37.037 17.77 18.43 38.85 1.98
6583 7089 7.542025 TGACGGTGAATCTCATCATATGATAG 58.458 38.462 17.77 14.50 38.85 2.08
6584 7090 7.394359 TCTGACGGTGAATCTCATCATATGATA 59.606 37.037 17.77 3.52 38.85 2.15
6585 7091 6.210185 TCTGACGGTGAATCTCATCATATGAT 59.790 38.462 12.62 12.62 38.85 2.45
6586 7092 5.536161 TCTGACGGTGAATCTCATCATATGA 59.464 40.000 8.10 8.10 37.76 2.15
6587 7093 5.632764 GTCTGACGGTGAATCTCATCATATG 59.367 44.000 0.00 0.00 0.00 1.78
6588 7094 5.538053 AGTCTGACGGTGAATCTCATCATAT 59.462 40.000 1.52 0.00 0.00 1.78
6589 7095 4.889995 AGTCTGACGGTGAATCTCATCATA 59.110 41.667 1.52 0.00 0.00 2.15
6590 7096 3.703556 AGTCTGACGGTGAATCTCATCAT 59.296 43.478 1.52 0.00 0.00 2.45
6591 7097 3.092301 AGTCTGACGGTGAATCTCATCA 58.908 45.455 1.52 0.00 0.00 3.07
6592 7098 3.791973 AGTCTGACGGTGAATCTCATC 57.208 47.619 1.52 0.00 0.00 2.92
6593 7099 4.017126 TGTAGTCTGACGGTGAATCTCAT 58.983 43.478 1.52 0.00 0.00 2.90
6594 7100 3.418047 TGTAGTCTGACGGTGAATCTCA 58.582 45.455 1.52 0.00 0.00 3.27
6595 7101 3.440872 ACTGTAGTCTGACGGTGAATCTC 59.559 47.826 1.52 0.00 37.54 2.75
6596 7102 3.422796 ACTGTAGTCTGACGGTGAATCT 58.577 45.455 1.52 0.00 37.54 2.40
6597 7103 3.728268 CGACTGTAGTCTGACGGTGAATC 60.728 52.174 10.05 0.00 42.66 2.52
6598 7104 2.161808 CGACTGTAGTCTGACGGTGAAT 59.838 50.000 10.05 0.00 42.66 2.57
6599 7105 1.534163 CGACTGTAGTCTGACGGTGAA 59.466 52.381 10.05 0.00 42.66 3.18
6600 7106 1.154197 CGACTGTAGTCTGACGGTGA 58.846 55.000 10.05 0.00 42.66 4.02
6601 7107 0.454620 GCGACTGTAGTCTGACGGTG 60.455 60.000 10.05 0.00 42.66 4.94
6602 7108 0.887836 TGCGACTGTAGTCTGACGGT 60.888 55.000 10.05 0.78 42.66 4.83
6603 7109 0.452184 ATGCGACTGTAGTCTGACGG 59.548 55.000 10.05 0.00 42.66 4.79
6604 7110 1.816370 GATGCGACTGTAGTCTGACG 58.184 55.000 10.05 0.00 42.66 4.35
6605 7111 1.397343 TCGATGCGACTGTAGTCTGAC 59.603 52.381 10.05 0.00 42.66 3.51
6606 7112 1.666189 CTCGATGCGACTGTAGTCTGA 59.334 52.381 10.05 0.00 42.66 3.27
6607 7113 1.398739 ACTCGATGCGACTGTAGTCTG 59.601 52.381 10.05 5.30 42.66 3.51
6608 7114 1.740297 ACTCGATGCGACTGTAGTCT 58.260 50.000 10.05 0.00 42.66 3.24
6609 7115 2.032722 CCTACTCGATGCGACTGTAGTC 60.033 54.545 12.26 1.92 41.47 2.59
6610 7116 1.941294 CCTACTCGATGCGACTGTAGT 59.059 52.381 12.26 0.00 34.82 2.73
6611 7117 1.264557 CCCTACTCGATGCGACTGTAG 59.735 57.143 8.43 8.43 35.70 2.74
6612 7118 1.306148 CCCTACTCGATGCGACTGTA 58.694 55.000 0.00 0.00 0.00 2.74
6613 7119 2.005960 GCCCTACTCGATGCGACTGT 62.006 60.000 0.00 0.00 0.00 3.55
6614 7120 1.299468 GCCCTACTCGATGCGACTG 60.299 63.158 0.00 0.00 0.00 3.51
6615 7121 1.753078 TGCCCTACTCGATGCGACT 60.753 57.895 0.00 0.00 0.00 4.18
6616 7122 1.589196 GTGCCCTACTCGATGCGAC 60.589 63.158 0.00 0.00 0.00 5.19
6617 7123 2.782222 GGTGCCCTACTCGATGCGA 61.782 63.158 0.00 0.00 0.00 5.10
6618 7124 2.279517 GGTGCCCTACTCGATGCG 60.280 66.667 0.00 0.00 0.00 4.73
6619 7125 2.279517 CGGTGCCCTACTCGATGC 60.280 66.667 0.00 0.00 0.00 3.91
6620 7126 2.125326 TCCGGTGCCCTACTCGATG 61.125 63.158 0.00 0.00 0.00 3.84
6621 7127 2.125961 GTCCGGTGCCCTACTCGAT 61.126 63.158 0.00 0.00 0.00 3.59
6622 7128 2.753043 GTCCGGTGCCCTACTCGA 60.753 66.667 0.00 0.00 0.00 4.04
6623 7129 4.189188 CGTCCGGTGCCCTACTCG 62.189 72.222 0.00 0.00 0.00 4.18
6624 7130 3.834799 CCGTCCGGTGCCCTACTC 61.835 72.222 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.