Multiple sequence alignment - TraesCS2A01G327000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G327000 chr2A 100.000 6610 0 0 1 6610 558524051 558530660 0.000000e+00 12207.0
1 TraesCS2A01G327000 chr2A 93.103 87 5 1 4724 4810 558528733 558528818 6.960000e-25 126.0
2 TraesCS2A01G327000 chr2A 93.103 87 5 1 4683 4768 558528774 558528860 6.960000e-25 126.0
3 TraesCS2A01G327000 chr2A 97.826 46 0 1 6195 6239 558530207 558530252 1.980000e-10 78.7
4 TraesCS2A01G327000 chr2A 97.826 46 0 1 6157 6202 558530245 558530289 1.980000e-10 78.7
5 TraesCS2A01G327000 chr2D 92.411 5521 253 69 386 5828 429096578 429091146 0.000000e+00 7721.0
6 TraesCS2A01G327000 chr2D 93.333 90 5 1 4683 4771 429092245 429092156 1.500000e-26 132.0
7 TraesCS2A01G327000 chr2D 92.683 82 5 1 4724 4805 429092286 429092206 4.190000e-22 117.0
8 TraesCS2A01G327000 chr2B 91.585 3684 180 52 338 3967 506216152 506212545 0.000000e+00 4966.0
9 TraesCS2A01G327000 chr2B 92.535 1795 82 30 3966 5738 506212451 506210687 0.000000e+00 2525.0
10 TraesCS2A01G327000 chr2B 89.822 393 27 4 6214 6598 506208058 506207671 5.960000e-135 492.0
11 TraesCS2A01G327000 chr2B 83.797 395 29 22 5829 6202 506208414 506208034 6.350000e-90 342.0
12 TraesCS2A01G327000 chr2B 92.222 90 6 1 4683 4771 506211698 506211609 6.960000e-25 126.0
13 TraesCS2A01G327000 chr2B 90.000 90 8 1 4724 4813 506211739 506211651 1.510000e-21 115.0
14 TraesCS2A01G327000 chr2B 96.000 50 1 1 4681 4729 506211658 506211609 5.490000e-11 80.5
15 TraesCS2A01G327000 chr3B 78.072 415 57 21 6195 6581 630404453 630404861 1.430000e-56 231.0
16 TraesCS2A01G327000 chr6A 83.654 208 29 5 6207 6412 30899362 30899566 2.430000e-44 191.0
17 TraesCS2A01G327000 chr7D 78.799 283 33 12 6320 6580 489121213 489120936 1.470000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G327000 chr2A 558524051 558530660 6609 False 2523.280000 12207 96.371600 1 6610 5 chr2A.!!$F1 6609
1 TraesCS2A01G327000 chr2D 429091146 429096578 5432 True 7721.000000 7721 92.411000 386 5828 1 chr2D.!!$R1 5442
2 TraesCS2A01G327000 chr2B 506207671 506216152 8481 True 1235.214286 4966 90.851571 338 6598 7 chr2B.!!$R1 6260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 331 0.179094 AAGTTCCGACTTGCACGACA 60.179 50.000 0.00 0.00 44.27 4.35 F
365 366 0.816825 ATTATGGCAGCAGCACCTCG 60.817 55.000 2.65 0.00 44.61 4.63 F
999 1028 1.004918 CGCCCTGTTCCGTTCTTCT 60.005 57.895 0.00 0.00 0.00 2.85 F
1461 1500 1.375140 GACGTCGGGGGTCTTTTCC 60.375 63.158 0.00 0.00 0.00 3.13 F
2618 2687 0.177836 CATCATCGGCACCACCAGTA 59.822 55.000 0.00 0.00 39.03 2.74 F
3059 3128 1.276421 GGCTCTACTCTTGGTTCTGCA 59.724 52.381 0.00 0.00 0.00 4.41 F
4621 4794 0.105593 ATGGCATACCTCTGCGTGAG 59.894 55.000 0.00 0.13 43.23 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 1536 0.178981 CCCACCACATCCCATCATCC 60.179 60.000 0.00 0.00 0.00 3.51 R
1567 1607 1.006758 TCTGACCTCGGATACACCCTT 59.993 52.381 0.00 0.00 34.64 3.95 R
2618 2687 0.317160 TTCGATCCAGCAACTCACGT 59.683 50.000 0.00 0.00 0.00 4.49 R
3189 3258 1.331214 CCATGGGTTGCAACTGAAGT 58.669 50.000 27.64 8.35 0.00 3.01 R
4236 4409 0.332972 GGGGAGGAACATCAAGGCTT 59.667 55.000 0.00 0.00 0.00 4.35 R
4885 5058 0.108756 GTAGAGGTTCCGGCACACTC 60.109 60.000 6.56 10.21 0.00 3.51 R
6277 8713 0.032403 TGGTGGAACGAACGTGGTAG 59.968 55.000 0.00 0.00 38.12 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.449251 TGTTAGGTTTGTATTTAGTTTCCGTT 57.551 30.769 0.00 0.00 0.00 4.44
26 27 8.901793 TGTTAGGTTTGTATTTAGTTTCCGTTT 58.098 29.630 0.00 0.00 0.00 3.60
27 28 9.385902 GTTAGGTTTGTATTTAGTTTCCGTTTC 57.614 33.333 0.00 0.00 0.00 2.78
28 29 7.812690 AGGTTTGTATTTAGTTTCCGTTTCT 57.187 32.000 0.00 0.00 0.00 2.52
29 30 7.868775 AGGTTTGTATTTAGTTTCCGTTTCTC 58.131 34.615 0.00 0.00 0.00 2.87
30 31 7.499895 AGGTTTGTATTTAGTTTCCGTTTCTCA 59.500 33.333 0.00 0.00 0.00 3.27
31 32 8.294577 GGTTTGTATTTAGTTTCCGTTTCTCAT 58.705 33.333 0.00 0.00 0.00 2.90
32 33 9.113876 GTTTGTATTTAGTTTCCGTTTCTCATG 57.886 33.333 0.00 0.00 0.00 3.07
33 34 6.837992 TGTATTTAGTTTCCGTTTCTCATGC 58.162 36.000 0.00 0.00 0.00 4.06
34 35 5.957842 ATTTAGTTTCCGTTTCTCATGCA 57.042 34.783 0.00 0.00 0.00 3.96
35 36 5.957842 TTTAGTTTCCGTTTCTCATGCAT 57.042 34.783 0.00 0.00 0.00 3.96
36 37 5.957842 TTAGTTTCCGTTTCTCATGCATT 57.042 34.783 0.00 0.00 0.00 3.56
37 38 4.425577 AGTTTCCGTTTCTCATGCATTC 57.574 40.909 0.00 0.00 0.00 2.67
38 39 3.120199 AGTTTCCGTTTCTCATGCATTCG 60.120 43.478 0.00 0.00 0.00 3.34
39 40 0.726827 TCCGTTTCTCATGCATTCGC 59.273 50.000 0.00 0.00 39.24 4.70
70 71 7.883229 AAAAAGTTTTCGTTTCTCATTGTGT 57.117 28.000 0.32 0.00 31.69 3.72
71 72 7.883229 AAAAGTTTTCGTTTCTCATTGTGTT 57.117 28.000 0.00 0.00 0.00 3.32
72 73 7.883229 AAAGTTTTCGTTTCTCATTGTGTTT 57.117 28.000 0.00 0.00 0.00 2.83
73 74 7.883229 AAGTTTTCGTTTCTCATTGTGTTTT 57.117 28.000 0.00 0.00 0.00 2.43
74 75 7.883229 AGTTTTCGTTTCTCATTGTGTTTTT 57.117 28.000 0.00 0.00 0.00 1.94
75 76 7.949186 AGTTTTCGTTTCTCATTGTGTTTTTC 58.051 30.769 0.00 0.00 0.00 2.29
76 77 6.547493 TTTCGTTTCTCATTGTGTTTTTCG 57.453 33.333 0.00 0.00 0.00 3.46
77 78 5.472320 TCGTTTCTCATTGTGTTTTTCGA 57.528 34.783 0.00 0.00 0.00 3.71
78 79 5.870444 TCGTTTCTCATTGTGTTTTTCGAA 58.130 33.333 0.00 0.00 0.00 3.71
79 80 6.491394 TCGTTTCTCATTGTGTTTTTCGAAT 58.509 32.000 0.00 0.00 0.00 3.34
80 81 6.970043 TCGTTTCTCATTGTGTTTTTCGAATT 59.030 30.769 0.00 0.00 0.00 2.17
81 82 7.486551 TCGTTTCTCATTGTGTTTTTCGAATTT 59.513 29.630 0.00 0.00 0.00 1.82
82 83 7.575186 CGTTTCTCATTGTGTTTTTCGAATTTG 59.425 33.333 0.00 0.00 0.00 2.32
83 84 7.462109 TTCTCATTGTGTTTTTCGAATTTGG 57.538 32.000 0.00 0.00 0.00 3.28
84 85 6.800543 TCTCATTGTGTTTTTCGAATTTGGA 58.199 32.000 0.00 0.00 0.00 3.53
85 86 7.432869 TCTCATTGTGTTTTTCGAATTTGGAT 58.567 30.769 0.00 0.00 0.00 3.41
86 87 7.594758 TCTCATTGTGTTTTTCGAATTTGGATC 59.405 33.333 0.00 0.00 0.00 3.36
87 88 7.432869 TCATTGTGTTTTTCGAATTTGGATCT 58.567 30.769 0.00 0.00 0.00 2.75
88 89 7.381948 TCATTGTGTTTTTCGAATTTGGATCTG 59.618 33.333 0.00 0.00 0.00 2.90
89 90 6.384258 TGTGTTTTTCGAATTTGGATCTGA 57.616 33.333 0.00 0.00 0.00 3.27
90 91 6.800543 TGTGTTTTTCGAATTTGGATCTGAA 58.199 32.000 0.00 0.00 0.00 3.02
91 92 7.432869 TGTGTTTTTCGAATTTGGATCTGAAT 58.567 30.769 0.00 0.00 0.00 2.57
92 93 7.925483 TGTGTTTTTCGAATTTGGATCTGAATT 59.075 29.630 0.00 6.56 0.00 2.17
93 94 8.764287 GTGTTTTTCGAATTTGGATCTGAATTT 58.236 29.630 0.00 0.00 0.00 1.82
94 95 9.323985 TGTTTTTCGAATTTGGATCTGAATTTT 57.676 25.926 0.00 0.00 0.00 1.82
99 100 9.638239 TTCGAATTTGGATCTGAATTTTTAAGG 57.362 29.630 0.00 0.00 0.00 2.69
100 101 8.250332 TCGAATTTGGATCTGAATTTTTAAGGG 58.750 33.333 7.81 0.00 0.00 3.95
101 102 8.034804 CGAATTTGGATCTGAATTTTTAAGGGT 58.965 33.333 7.81 0.00 0.00 4.34
102 103 9.371136 GAATTTGGATCTGAATTTTTAAGGGTC 57.629 33.333 7.81 0.00 0.00 4.46
103 104 7.847711 TTTGGATCTGAATTTTTAAGGGTCA 57.152 32.000 0.00 0.00 0.00 4.02
104 105 8.434589 TTTGGATCTGAATTTTTAAGGGTCAT 57.565 30.769 0.00 0.00 0.00 3.06
105 106 9.540538 TTTGGATCTGAATTTTTAAGGGTCATA 57.459 29.630 0.00 0.00 0.00 2.15
106 107 8.752005 TGGATCTGAATTTTTAAGGGTCATAG 57.248 34.615 0.00 0.00 0.00 2.23
107 108 7.779798 TGGATCTGAATTTTTAAGGGTCATAGG 59.220 37.037 0.00 0.00 0.00 2.57
108 109 7.255625 GGATCTGAATTTTTAAGGGTCATAGGC 60.256 40.741 0.00 0.00 0.00 3.93
109 110 5.588648 TCTGAATTTTTAAGGGTCATAGGCG 59.411 40.000 0.00 0.00 0.00 5.52
110 111 4.097286 TGAATTTTTAAGGGTCATAGGCGC 59.903 41.667 0.00 0.00 0.00 6.53
111 112 1.658994 TTTTAAGGGTCATAGGCGCG 58.341 50.000 0.00 0.00 0.00 6.86
112 113 0.812412 TTTAAGGGTCATAGGCGCGC 60.812 55.000 25.94 25.94 0.00 6.86
113 114 1.962321 TTAAGGGTCATAGGCGCGCA 61.962 55.000 34.42 14.59 0.00 6.09
114 115 1.754380 TAAGGGTCATAGGCGCGCAT 61.754 55.000 34.42 30.20 0.00 4.73
115 116 2.996168 AAGGGTCATAGGCGCGCATC 62.996 60.000 34.42 17.03 0.00 3.91
116 117 2.029666 GGTCATAGGCGCGCATCT 59.970 61.111 34.42 23.62 0.00 2.90
117 118 1.595382 GGTCATAGGCGCGCATCTT 60.595 57.895 34.42 14.80 0.00 2.40
118 119 0.319555 GGTCATAGGCGCGCATCTTA 60.320 55.000 34.42 18.76 0.00 2.10
119 120 1.673033 GGTCATAGGCGCGCATCTTAT 60.673 52.381 34.42 20.12 0.00 1.73
120 121 1.391485 GTCATAGGCGCGCATCTTATG 59.609 52.381 34.42 28.54 0.00 1.90
121 122 1.272212 TCATAGGCGCGCATCTTATGA 59.728 47.619 34.42 30.02 0.00 2.15
122 123 2.068519 CATAGGCGCGCATCTTATGAA 58.931 47.619 34.42 9.37 0.00 2.57
123 124 1.497991 TAGGCGCGCATCTTATGAAC 58.502 50.000 34.42 11.21 0.00 3.18
124 125 0.461870 AGGCGCGCATCTTATGAACA 60.462 50.000 34.42 0.00 0.00 3.18
125 126 0.588252 GGCGCGCATCTTATGAACAT 59.412 50.000 34.42 0.00 0.00 2.71
126 127 1.002468 GGCGCGCATCTTATGAACATT 60.002 47.619 34.42 0.00 0.00 2.71
127 128 2.223144 GGCGCGCATCTTATGAACATTA 59.777 45.455 34.42 0.00 0.00 1.90
128 129 3.303725 GGCGCGCATCTTATGAACATTAA 60.304 43.478 34.42 0.00 0.00 1.40
129 130 4.278858 GCGCGCATCTTATGAACATTAAA 58.721 39.130 29.10 0.00 0.00 1.52
130 131 4.732923 GCGCGCATCTTATGAACATTAAAA 59.267 37.500 29.10 0.00 0.00 1.52
131 132 5.399301 GCGCGCATCTTATGAACATTAAAAT 59.601 36.000 29.10 0.00 0.00 1.82
132 133 6.577055 GCGCGCATCTTATGAACATTAAAATA 59.423 34.615 29.10 0.00 0.00 1.40
133 134 7.201182 GCGCGCATCTTATGAACATTAAAATAG 60.201 37.037 29.10 0.00 0.00 1.73
134 135 8.009409 CGCGCATCTTATGAACATTAAAATAGA 58.991 33.333 8.75 0.00 0.00 1.98
135 136 9.663904 GCGCATCTTATGAACATTAAAATAGAA 57.336 29.630 0.30 0.00 0.00 2.10
162 163 9.991906 TTAGAACATTTAAGTACTGCTACAAGT 57.008 29.630 0.00 0.00 0.00 3.16
163 164 8.904099 AGAACATTTAAGTACTGCTACAAGTT 57.096 30.769 0.00 0.00 0.00 2.66
164 165 9.338622 AGAACATTTAAGTACTGCTACAAGTTT 57.661 29.630 0.00 0.00 0.00 2.66
165 166 9.946165 GAACATTTAAGTACTGCTACAAGTTTT 57.054 29.630 0.00 0.00 0.00 2.43
174 175 8.784043 AGTACTGCTACAAGTTTTAGAATTTGG 58.216 33.333 0.00 0.00 36.95 3.28
175 176 7.817418 ACTGCTACAAGTTTTAGAATTTGGA 57.183 32.000 6.26 0.00 36.95 3.53
176 177 7.875971 ACTGCTACAAGTTTTAGAATTTGGAG 58.124 34.615 8.62 8.62 42.98 3.86
180 181 5.519722 ACAAGTTTTAGAATTTGGAGCACG 58.480 37.500 6.26 0.00 36.95 5.34
181 182 4.766404 AGTTTTAGAATTTGGAGCACGG 57.234 40.909 0.00 0.00 0.00 4.94
182 183 4.394729 AGTTTTAGAATTTGGAGCACGGA 58.605 39.130 0.00 0.00 0.00 4.69
183 184 4.825085 AGTTTTAGAATTTGGAGCACGGAA 59.175 37.500 0.00 0.00 0.00 4.30
184 185 5.048713 AGTTTTAGAATTTGGAGCACGGAAG 60.049 40.000 0.00 0.00 0.00 3.46
208 209 3.111853 GTGGAATACGGCATCATCTGA 57.888 47.619 0.00 0.00 0.00 3.27
209 210 3.668447 GTGGAATACGGCATCATCTGAT 58.332 45.455 0.00 0.00 34.56 2.90
210 211 4.820897 GTGGAATACGGCATCATCTGATA 58.179 43.478 0.00 0.00 32.63 2.15
211 212 5.423015 GTGGAATACGGCATCATCTGATAT 58.577 41.667 0.00 0.00 32.63 1.63
212 213 5.877012 GTGGAATACGGCATCATCTGATATT 59.123 40.000 0.00 0.00 32.63 1.28
213 214 6.372659 GTGGAATACGGCATCATCTGATATTT 59.627 38.462 0.00 0.00 32.63 1.40
214 215 6.942005 TGGAATACGGCATCATCTGATATTTT 59.058 34.615 0.00 0.00 32.63 1.82
215 216 7.119699 TGGAATACGGCATCATCTGATATTTTC 59.880 37.037 0.00 0.00 32.63 2.29
216 217 6.992063 ATACGGCATCATCTGATATTTTCC 57.008 37.500 0.00 0.00 32.63 3.13
217 218 4.074970 ACGGCATCATCTGATATTTTCCC 58.925 43.478 0.00 0.00 32.63 3.97
218 219 3.125829 CGGCATCATCTGATATTTTCCCG 59.874 47.826 0.00 0.00 32.63 5.14
219 220 4.074970 GGCATCATCTGATATTTTCCCGT 58.925 43.478 0.00 0.00 32.63 5.28
220 221 4.083110 GGCATCATCTGATATTTTCCCGTG 60.083 45.833 0.00 0.00 32.63 4.94
221 222 4.614535 GCATCATCTGATATTTTCCCGTGC 60.615 45.833 0.00 0.00 32.63 5.34
222 223 3.130633 TCATCTGATATTTTCCCGTGCG 58.869 45.455 0.00 0.00 0.00 5.34
223 224 2.971660 TCTGATATTTTCCCGTGCGA 57.028 45.000 0.00 0.00 0.00 5.10
224 225 3.254470 TCTGATATTTTCCCGTGCGAA 57.746 42.857 0.00 0.00 0.00 4.70
225 226 2.933906 TCTGATATTTTCCCGTGCGAAC 59.066 45.455 0.00 0.00 0.00 3.95
226 227 1.661617 TGATATTTTCCCGTGCGAACG 59.338 47.619 9.60 9.60 0.00 3.95
235 236 3.641986 GTGCGAACGGTGCGGAAA 61.642 61.111 11.07 0.00 34.24 3.13
236 237 3.342627 TGCGAACGGTGCGGAAAG 61.343 61.111 11.07 0.00 34.24 2.62
237 238 3.039588 GCGAACGGTGCGGAAAGA 61.040 61.111 11.07 0.00 0.00 2.52
238 239 3.011760 GCGAACGGTGCGGAAAGAG 62.012 63.158 11.07 0.00 0.00 2.85
239 240 2.861006 GAACGGTGCGGAAAGAGC 59.139 61.111 0.00 0.00 0.00 4.09
240 241 3.011760 GAACGGTGCGGAAAGAGCG 62.012 63.158 0.00 0.00 38.97 5.03
243 244 3.127533 GGTGCGGAAAGAGCGCAT 61.128 61.111 11.47 0.00 45.96 4.73
244 245 2.401195 GTGCGGAAAGAGCGCATC 59.599 61.111 11.47 4.24 43.84 3.91
245 246 2.047370 TGCGGAAAGAGCGCATCA 60.047 55.556 11.47 0.00 37.44 3.07
246 247 2.390599 TGCGGAAAGAGCGCATCAC 61.391 57.895 11.47 0.00 37.44 3.06
248 249 2.802667 CGGAAAGAGCGCATCACGG 61.803 63.158 11.47 0.00 43.93 4.94
249 250 2.401195 GAAAGAGCGCATCACGGC 59.599 61.111 11.47 0.00 43.93 5.68
277 278 4.692475 GGCGGGCAGGTACAACGT 62.692 66.667 0.00 0.00 0.00 3.99
278 279 3.419759 GCGGGCAGGTACAACGTG 61.420 66.667 0.00 0.00 37.08 4.49
279 280 2.340809 CGGGCAGGTACAACGTGA 59.659 61.111 4.07 0.00 36.17 4.35
280 281 2.025418 CGGGCAGGTACAACGTGAC 61.025 63.158 4.07 0.60 41.05 3.67
281 282 3.961729 GGCAGGTACAACGTGACC 58.038 61.111 6.46 6.46 36.07 4.02
282 283 1.670083 GGCAGGTACAACGTGACCC 60.670 63.158 10.16 0.00 36.07 4.46
283 284 2.025418 GCAGGTACAACGTGACCCG 61.025 63.158 10.16 2.88 36.17 5.28
300 301 3.635433 CGTTCCTCGGCGATAAGAA 57.365 52.632 11.27 11.47 35.71 2.52
301 302 1.917273 CGTTCCTCGGCGATAAGAAA 58.083 50.000 11.27 0.00 35.71 2.52
302 303 1.587034 CGTTCCTCGGCGATAAGAAAC 59.413 52.381 11.27 9.63 35.71 2.78
303 304 2.613691 GTTCCTCGGCGATAAGAAACA 58.386 47.619 11.27 0.00 0.00 2.83
304 305 2.579207 TCCTCGGCGATAAGAAACAG 57.421 50.000 11.27 0.00 0.00 3.16
305 306 1.136305 TCCTCGGCGATAAGAAACAGG 59.864 52.381 11.27 4.69 0.00 4.00
306 307 1.136305 CCTCGGCGATAAGAAACAGGA 59.864 52.381 11.27 0.00 0.00 3.86
307 308 2.418197 CCTCGGCGATAAGAAACAGGAA 60.418 50.000 11.27 0.00 0.00 3.36
308 309 2.603560 CTCGGCGATAAGAAACAGGAAC 59.396 50.000 11.27 0.00 0.00 3.62
309 310 1.664151 CGGCGATAAGAAACAGGAACC 59.336 52.381 0.00 0.00 0.00 3.62
310 311 2.014857 GGCGATAAGAAACAGGAACCC 58.985 52.381 0.00 0.00 0.00 4.11
311 312 2.617021 GGCGATAAGAAACAGGAACCCA 60.617 50.000 0.00 0.00 0.00 4.51
312 313 3.078837 GCGATAAGAAACAGGAACCCAA 58.921 45.455 0.00 0.00 0.00 4.12
313 314 3.127030 GCGATAAGAAACAGGAACCCAAG 59.873 47.826 0.00 0.00 0.00 3.61
314 315 4.324267 CGATAAGAAACAGGAACCCAAGT 58.676 43.478 0.00 0.00 0.00 3.16
315 316 4.760204 CGATAAGAAACAGGAACCCAAGTT 59.240 41.667 0.00 0.00 39.54 2.66
329 330 2.601562 AAGTTCCGACTTGCACGAC 58.398 52.632 0.00 0.00 44.27 4.34
330 331 0.179094 AAGTTCCGACTTGCACGACA 60.179 50.000 0.00 0.00 44.27 4.35
331 332 0.874607 AGTTCCGACTTGCACGACAC 60.875 55.000 0.00 0.00 29.87 3.67
332 333 1.947146 TTCCGACTTGCACGACACG 60.947 57.895 0.00 0.03 0.00 4.49
333 334 2.339100 TTCCGACTTGCACGACACGA 62.339 55.000 0.00 0.00 0.00 4.35
334 335 1.947146 CCGACTTGCACGACACGAA 60.947 57.895 0.00 0.00 0.00 3.85
335 336 1.482955 CGACTTGCACGACACGAAG 59.517 57.895 0.00 0.00 0.00 3.79
336 337 1.853319 GACTTGCACGACACGAAGG 59.147 57.895 0.00 0.00 0.00 3.46
349 350 5.105635 ACGACACGAAGGAACCAAGATATTA 60.106 40.000 0.00 0.00 0.00 0.98
350 351 5.983720 CGACACGAAGGAACCAAGATATTAT 59.016 40.000 0.00 0.00 0.00 1.28
351 352 6.074302 CGACACGAAGGAACCAAGATATTATG 60.074 42.308 0.00 0.00 0.00 1.90
358 359 4.217118 GGAACCAAGATATTATGGCAGCAG 59.783 45.833 7.45 0.00 40.51 4.24
365 366 0.816825 ATTATGGCAGCAGCACCTCG 60.817 55.000 2.65 0.00 44.61 4.63
377 378 3.243267 GCAGCACCTCGGTTTCTTTTTAA 60.243 43.478 0.00 0.00 0.00 1.52
541 545 1.426041 AACGCAGACACAACGACACC 61.426 55.000 0.00 0.00 0.00 4.16
615 626 9.695526 TTTACGTGAACTATTATTGTACACTGT 57.304 29.630 0.00 0.00 0.00 3.55
617 628 8.679288 ACGTGAACTATTATTGTACACTGTAC 57.321 34.615 11.82 11.82 0.00 2.90
618 629 8.298854 ACGTGAACTATTATTGTACACTGTACA 58.701 33.333 16.61 16.61 0.00 2.90
619 630 9.297586 CGTGAACTATTATTGTACACTGTACAT 57.702 33.333 20.30 13.51 0.00 2.29
626 637 7.915293 TTATTGTACACTGTACATTTCAGGG 57.085 36.000 20.30 0.00 41.53 4.45
627 638 5.554437 TTGTACACTGTACATTTCAGGGA 57.446 39.130 20.30 2.99 38.46 4.20
628 639 5.554437 TGTACACTGTACATTTCAGGGAA 57.446 39.130 16.61 0.00 38.46 3.97
629 640 5.302360 TGTACACTGTACATTTCAGGGAAC 58.698 41.667 16.61 0.00 38.46 3.62
630 641 4.706842 ACACTGTACATTTCAGGGAACT 57.293 40.909 0.00 0.00 46.44 3.01
631 642 5.818678 ACACTGTACATTTCAGGGAACTA 57.181 39.130 0.00 0.00 40.21 2.24
632 643 6.374417 ACACTGTACATTTCAGGGAACTAT 57.626 37.500 0.00 0.00 40.21 2.12
633 644 6.779860 ACACTGTACATTTCAGGGAACTATT 58.220 36.000 0.00 0.00 40.21 1.73
634 645 7.913789 ACACTGTACATTTCAGGGAACTATTA 58.086 34.615 0.00 0.00 40.21 0.98
635 646 8.548877 ACACTGTACATTTCAGGGAACTATTAT 58.451 33.333 0.00 0.00 40.21 1.28
636 647 9.396022 CACTGTACATTTCAGGGAACTATTATT 57.604 33.333 0.00 0.00 40.21 1.40
680 694 5.769662 TGTAGTTACCGACTTAAGAGGAACA 59.230 40.000 22.17 15.44 39.86 3.18
681 695 5.796424 AGTTACCGACTTAAGAGGAACAA 57.204 39.130 22.17 12.81 33.92 2.83
682 696 6.356186 AGTTACCGACTTAAGAGGAACAAT 57.644 37.500 22.17 7.52 33.92 2.71
742 756 2.779282 TGCGGATATGCACAACCTG 58.221 52.632 0.00 0.00 40.62 4.00
751 765 1.398692 TGCACAACCTGGGAAAACTC 58.601 50.000 0.00 0.00 0.00 3.01
784 798 1.601914 GGACCAACGCCAAAATCACAC 60.602 52.381 0.00 0.00 0.00 3.82
786 800 1.202359 ACCAACGCCAAAATCACACAC 60.202 47.619 0.00 0.00 0.00 3.82
979 993 1.872388 GCTCGATAAAAGAGGGAGCC 58.128 55.000 0.04 0.00 43.20 4.70
999 1028 1.004918 CGCCCTGTTCCGTTCTTCT 60.005 57.895 0.00 0.00 0.00 2.85
1097 1135 4.436998 CAGGGTCTCCGGTCGCAC 62.437 72.222 0.00 0.00 38.33 5.34
1260 1298 2.759114 CCCTGGCAGTGTGGTGAT 59.241 61.111 14.43 0.00 0.00 3.06
1262 1300 2.338015 CCTGGCAGTGTGGTGATGC 61.338 63.158 14.43 0.00 39.25 3.91
1266 1304 2.680913 GCAGTGTGGTGATGCCGTC 61.681 63.158 0.00 0.00 41.21 4.79
1340 1378 1.871077 CGTAGGGTTTGGCGTTTCC 59.129 57.895 0.00 0.00 0.00 3.13
1397 1436 2.638330 TTTTAGAGCGATCCGGGCGG 62.638 60.000 17.14 0.00 35.00 6.13
1412 1451 3.041940 CGGTGCTTGTGGTCCGAC 61.042 66.667 0.00 0.00 44.86 4.79
1416 1455 1.837051 TGCTTGTGGTCCGACTCCT 60.837 57.895 0.00 0.00 0.00 3.69
1461 1500 1.375140 GACGTCGGGGGTCTTTTCC 60.375 63.158 0.00 0.00 0.00 3.13
1533 1573 3.056607 GTGGGATTTTGTGTTCCATCTGG 60.057 47.826 0.00 0.00 33.43 3.86
1551 1591 5.710513 TCTGGTTGTTGAAGAATGGATTG 57.289 39.130 0.00 0.00 0.00 2.67
1554 1594 5.841810 TGGTTGTTGAAGAATGGATTGTTC 58.158 37.500 2.97 2.97 39.63 3.18
1561 1601 8.477256 TGTTGAAGAATGGATTGTTCTTTCTTT 58.523 29.630 9.81 0.00 43.80 2.52
1563 1603 9.533253 TTGAAGAATGGATTGTTCTTTCTTTTC 57.467 29.630 9.81 0.00 43.80 2.29
1564 1604 8.917088 TGAAGAATGGATTGTTCTTTCTTTTCT 58.083 29.630 9.81 0.00 43.80 2.52
1578 1619 9.901172 TTCTTTCTTTTCTATAAGGGTGTATCC 57.099 33.333 0.00 0.00 0.00 2.59
1627 1669 3.427503 GCCATTGTAAAACCGTGGAGATG 60.428 47.826 0.00 0.00 31.59 2.90
1679 1721 2.082366 GCTTGCGTTGATTGGTGCG 61.082 57.895 0.00 0.00 0.00 5.34
1707 1756 3.248602 CAGATTACAGTTAGGGCGATTGC 59.751 47.826 0.00 0.00 41.71 3.56
1726 1775 2.038426 TGCTGCTGCTAGTAAAGAACCA 59.962 45.455 17.00 0.00 40.48 3.67
1745 1794 3.044986 CCAAAGATGCTTTGTGTTCGTG 58.955 45.455 16.11 0.00 0.00 4.35
1784 1833 7.295952 ACTTTAATCTATGTTTCAGAGCACG 57.704 36.000 0.00 0.00 0.00 5.34
1798 1847 3.625897 CACGGGAGGCCACTGTCA 61.626 66.667 5.01 0.00 0.00 3.58
1803 1852 1.632589 GGGAGGCCACTGTCAATTTT 58.367 50.000 5.01 0.00 0.00 1.82
1825 1874 9.798994 ATTTTTGATCTCTCATGTGCTATTTTC 57.201 29.630 0.00 0.00 0.00 2.29
1876 1925 9.539825 GTGATATATTTCTGTCTCTGTGTCATT 57.460 33.333 0.00 0.00 0.00 2.57
1912 1961 8.144478 ACCTAGTAGTGTTCTTATATGTGCATG 58.856 37.037 0.00 0.00 0.00 4.06
1938 1987 2.485426 GCGTACTGTGGTAGTGTGACTA 59.515 50.000 0.00 0.00 40.65 2.59
1940 1989 4.380233 GCGTACTGTGGTAGTGTGACTATT 60.380 45.833 0.00 0.00 40.65 1.73
1955 2004 5.529581 TGACTATTCACTTGTGTCACTGA 57.470 39.130 4.27 0.00 33.45 3.41
1957 2006 5.928264 TGACTATTCACTTGTGTCACTGATG 59.072 40.000 4.27 0.00 33.45 3.07
1961 2010 2.874086 TCACTTGTGTCACTGATGCTTG 59.126 45.455 4.27 0.00 0.00 4.01
1977 2026 6.656902 TGATGCTTGAAATCTCCACTATCTT 58.343 36.000 0.00 0.00 0.00 2.40
1978 2027 6.765036 TGATGCTTGAAATCTCCACTATCTTC 59.235 38.462 0.00 0.00 0.00 2.87
2064 2133 5.104900 AGGAACAACACACACTTCTTCTAGT 60.105 40.000 0.00 0.00 0.00 2.57
2102 2171 2.815589 GCCACCTGTTGAATCCTTCTGT 60.816 50.000 0.00 0.00 0.00 3.41
2109 2178 7.175641 CACCTGTTGAATCCTTCTGTTCTAATT 59.824 37.037 0.00 0.00 0.00 1.40
2328 2397 8.339247 TCACATATACTGATGAGGATGGAGATA 58.661 37.037 0.00 0.00 0.00 1.98
2571 2640 3.084786 GTTCCTGCTGTCCTTGCTAAAT 58.915 45.455 0.00 0.00 0.00 1.40
2618 2687 0.177836 CATCATCGGCACCACCAGTA 59.822 55.000 0.00 0.00 39.03 2.74
2691 2760 3.166679 GAACCTACCAGTGGTCTCTCTT 58.833 50.000 20.72 4.21 37.09 2.85
2749 2818 7.121759 ACAAACATTCAGGGACATGAAAGATAG 59.878 37.037 8.62 1.14 42.21 2.08
2773 2842 1.471287 TGCATCTGAATCTGCAACAGC 59.529 47.619 2.13 0.00 44.87 4.40
2919 2988 1.835494 TCTAGTCGGTTCTGGTGGAG 58.165 55.000 0.00 0.00 0.00 3.86
2975 3044 3.266772 TGAGTAAGGGGAAATCACATGCT 59.733 43.478 0.00 0.00 0.00 3.79
3059 3128 1.276421 GGCTCTACTCTTGGTTCTGCA 59.724 52.381 0.00 0.00 0.00 4.41
3095 3164 6.129874 GCCCTTTGGGTCTATTAGAAAGATT 58.870 40.000 4.42 0.00 46.51 2.40
3168 3237 4.829064 TCAATTCCGACCTTTGAAACTG 57.171 40.909 0.00 0.00 0.00 3.16
3189 3258 7.504926 ACTGATCCAATACTTAACCCTTACA 57.495 36.000 0.00 0.00 0.00 2.41
3243 3312 1.306141 CCTCCTCCACCTGCCTACA 60.306 63.158 0.00 0.00 0.00 2.74
3276 3345 4.536489 AGTTTAGGTTCAGTAGGCCTTCAT 59.464 41.667 12.58 0.00 34.07 2.57
3277 3346 5.014228 AGTTTAGGTTCAGTAGGCCTTCATT 59.986 40.000 12.58 0.00 34.07 2.57
3285 3354 7.556635 GGTTCAGTAGGCCTTCATTAGTTAATT 59.443 37.037 12.58 0.00 0.00 1.40
3380 3449 6.910191 TCATAAATGGGTAGAATGTGATGGT 58.090 36.000 0.00 0.00 0.00 3.55
3381 3450 6.772233 TCATAAATGGGTAGAATGTGATGGTG 59.228 38.462 0.00 0.00 0.00 4.17
3382 3451 3.582998 ATGGGTAGAATGTGATGGTGG 57.417 47.619 0.00 0.00 0.00 4.61
3424 3493 1.295423 GGCCTCGCTACAAGTCCAA 59.705 57.895 0.00 0.00 0.00 3.53
3866 3939 6.762661 GGTGCATGCTTAACAATGGAAATATT 59.237 34.615 20.33 0.00 0.00 1.28
3867 3940 7.925483 GGTGCATGCTTAACAATGGAAATATTA 59.075 33.333 20.33 0.00 0.00 0.98
3948 4025 5.811100 AGCTTAGTGAAATTAGCGGTACTTC 59.189 40.000 0.00 1.30 38.62 3.01
3950 4027 3.870274 AGTGAAATTAGCGGTACTTCCC 58.130 45.455 11.25 2.86 0.00 3.97
3993 4165 7.071069 TGCTAATATGTTCTGGATGTGAGAT 57.929 36.000 0.00 0.00 0.00 2.75
4028 4201 7.568349 TGCATCTCAGACCATAATAAAGTCTT 58.432 34.615 0.00 0.00 38.80 3.01
4030 4203 9.547753 GCATCTCAGACCATAATAAAGTCTTAA 57.452 33.333 0.00 0.00 38.80 1.85
4236 4409 2.889512 TCACTTGCTCCTCTCCTTGTA 58.110 47.619 0.00 0.00 0.00 2.41
4310 4483 0.250901 GGAAGAGCCTGTTCAAGCCA 60.251 55.000 3.83 0.00 0.00 4.75
4313 4486 0.250640 AGAGCCTGTTCAAGCCAGTG 60.251 55.000 0.00 0.00 0.00 3.66
4314 4487 1.228367 AGCCTGTTCAAGCCAGTGG 60.228 57.895 4.20 4.20 0.00 4.00
4315 4488 1.529244 GCCTGTTCAAGCCAGTGGT 60.529 57.895 11.74 0.00 0.00 4.16
4356 4529 1.133976 AGACTTGAACTTGCCTGCAGT 60.134 47.619 13.81 0.00 0.00 4.40
4405 4578 7.310921 CCATCCATTGTATAGCCTCATTAGACT 60.311 40.741 0.00 0.00 0.00 3.24
4432 4605 2.281484 TCTTCCGCAAGTGGCCAC 60.281 61.111 29.22 29.22 40.31 5.01
4447 4620 2.101582 TGGCCACATGGTTTGTTTACAC 59.898 45.455 0.00 0.00 36.00 2.90
4461 4634 7.148755 GGTTTGTTTACACATCTGATCATTTGC 60.149 37.037 0.00 0.00 31.06 3.68
4621 4794 0.105593 ATGGCATACCTCTGCGTGAG 59.894 55.000 0.00 0.13 43.23 3.51
4642 4815 2.049156 CTTGCCACGCTGAGACGA 60.049 61.111 3.50 0.00 36.70 4.20
4799 4972 1.416243 ACCAGTTCAAGTACCCGTCA 58.584 50.000 0.00 0.00 0.00 4.35
4800 4973 1.975680 ACCAGTTCAAGTACCCGTCAT 59.024 47.619 0.00 0.00 0.00 3.06
4841 5014 2.603021 CTGAAGCTCTAGGGATGCCTA 58.397 52.381 13.00 13.00 0.00 3.93
4843 5016 2.320781 GAAGCTCTAGGGATGCCTACA 58.679 52.381 9.26 0.00 0.00 2.74
4852 5025 1.815421 GATGCCTACAGGTGTGGCG 60.815 63.158 14.72 0.42 41.71 5.69
4885 5058 2.751436 CCACTGCCGGAACCCATG 60.751 66.667 5.05 0.00 0.00 3.66
4923 5096 0.108615 CCGGCACCTACTCTTGTCAG 60.109 60.000 0.00 0.00 0.00 3.51
4953 5126 1.020437 GCTCCTGTTAGCATGCCTTC 58.980 55.000 15.66 5.35 42.30 3.46
4975 5151 3.119388 CGCCTGATGAAACCATCAACAAT 60.119 43.478 9.09 0.00 46.76 2.71
5047 5223 2.367567 GGTTGACCTGAACACAGAGGTA 59.632 50.000 0.00 0.00 42.95 3.08
5083 5259 2.593346 ATGATCTGCAGAAGTCGGTC 57.407 50.000 22.50 13.06 0.00 4.79
5107 5283 2.110967 CCTGTGCGGCTTCCATGAG 61.111 63.158 0.00 0.00 0.00 2.90
5147 5323 1.009829 GCTGAAGGAACTGGTATGCG 58.990 55.000 0.00 0.00 40.86 4.73
5177 5354 1.385528 TCCTGTGTAGCGCGAGAATA 58.614 50.000 12.10 0.00 0.00 1.75
5178 5355 1.954382 TCCTGTGTAGCGCGAGAATAT 59.046 47.619 12.10 0.00 0.00 1.28
5179 5356 2.031069 TCCTGTGTAGCGCGAGAATATC 60.031 50.000 12.10 0.00 0.00 1.63
5303 5492 0.179100 CGTGTGGCGATGGATCTTCT 60.179 55.000 0.00 0.00 44.77 2.85
5304 5493 1.293924 GTGTGGCGATGGATCTTCTG 58.706 55.000 0.00 0.00 0.00 3.02
5442 5639 3.058708 ACGAACTGAAGTGATGTTGCATG 60.059 43.478 0.00 0.00 0.00 4.06
5541 5751 2.830285 GCTCGTGCACCGTGGTTTT 61.830 57.895 12.15 0.00 39.41 2.43
5542 5752 1.725066 CTCGTGCACCGTGGTTTTT 59.275 52.632 12.15 0.00 37.94 1.94
5589 5799 1.409427 AGGCGAACTGCTAGTATGGTC 59.591 52.381 0.00 0.00 45.43 4.02
5597 5807 6.238786 CGAACTGCTAGTATGGTCTATGAGTT 60.239 42.308 0.00 0.00 30.68 3.01
5598 5808 6.642707 ACTGCTAGTATGGTCTATGAGTTC 57.357 41.667 0.00 0.00 0.00 3.01
5599 5809 6.369629 ACTGCTAGTATGGTCTATGAGTTCT 58.630 40.000 0.00 0.00 0.00 3.01
5600 5810 6.264292 ACTGCTAGTATGGTCTATGAGTTCTG 59.736 42.308 0.00 0.00 0.00 3.02
5602 5812 6.607600 TGCTAGTATGGTCTATGAGTTCTGTT 59.392 38.462 0.00 0.00 0.00 3.16
5654 5867 1.467734 CAGATGGTTGCTGTGCTCTTC 59.532 52.381 0.00 0.00 0.00 2.87
5661 5874 3.368843 GGTTGCTGTGCTCTTCTATCAGA 60.369 47.826 0.00 0.00 0.00 3.27
5662 5875 3.797451 TGCTGTGCTCTTCTATCAGAG 57.203 47.619 0.00 0.00 43.02 3.35
5663 5876 3.095332 TGCTGTGCTCTTCTATCAGAGT 58.905 45.455 0.00 0.00 42.25 3.24
5664 5877 3.130164 TGCTGTGCTCTTCTATCAGAGTC 59.870 47.826 0.00 0.00 42.25 3.36
5665 5878 3.381272 GCTGTGCTCTTCTATCAGAGTCT 59.619 47.826 0.00 0.00 42.25 3.24
5666 5879 4.734402 GCTGTGCTCTTCTATCAGAGTCTG 60.734 50.000 14.36 14.36 42.25 3.51
5667 5880 4.593956 TGTGCTCTTCTATCAGAGTCTGA 58.406 43.478 24.66 24.66 44.99 3.27
5694 5907 6.211384 TCAGAGATGTGGTTCTCATAAACTGA 59.789 38.462 4.46 0.00 43.82 3.41
5719 5932 6.870971 TGTTGGTTAGAGCTTATTTTCGTT 57.129 33.333 0.00 0.00 0.00 3.85
5727 5940 3.344515 AGCTTATTTTCGTTCTGGTCCC 58.655 45.455 0.00 0.00 0.00 4.46
5728 5941 3.078837 GCTTATTTTCGTTCTGGTCCCA 58.921 45.455 0.00 0.00 0.00 4.37
5730 5943 2.200373 ATTTTCGTTCTGGTCCCAGG 57.800 50.000 13.24 0.00 43.75 4.45
5731 5944 0.841289 TTTTCGTTCTGGTCCCAGGT 59.159 50.000 13.24 0.00 43.75 4.00
5732 5945 1.719529 TTTCGTTCTGGTCCCAGGTA 58.280 50.000 13.24 0.00 43.75 3.08
5733 5946 1.946984 TTCGTTCTGGTCCCAGGTAT 58.053 50.000 13.24 0.00 43.75 2.73
5734 5947 1.946984 TCGTTCTGGTCCCAGGTATT 58.053 50.000 13.24 0.00 43.75 1.89
5735 5948 1.829222 TCGTTCTGGTCCCAGGTATTC 59.171 52.381 13.24 0.25 43.75 1.75
5736 5949 1.134491 CGTTCTGGTCCCAGGTATTCC 60.134 57.143 13.24 0.00 43.75 3.01
5737 5950 1.913419 GTTCTGGTCCCAGGTATTCCA 59.087 52.381 13.24 0.00 43.75 3.53
5738 5951 2.307686 GTTCTGGTCCCAGGTATTCCAA 59.692 50.000 13.24 0.00 43.75 3.53
5739 5952 2.196595 TCTGGTCCCAGGTATTCCAAG 58.803 52.381 13.24 0.00 43.75 3.61
5740 5953 1.916181 CTGGTCCCAGGTATTCCAAGT 59.084 52.381 5.37 0.00 40.17 3.16
5748 5961 4.148838 CCAGGTATTCCAAGTTTCCAACA 58.851 43.478 0.00 0.00 35.89 3.33
5778 5991 3.510388 TGTATGAAGGAAGAGCGACTG 57.490 47.619 0.00 0.00 0.00 3.51
5798 6011 3.020274 TGCAAACAGGCAAGAAAGTGTA 58.980 40.909 0.00 0.00 41.65 2.90
5801 6014 4.601019 CAAACAGGCAAGAAAGTGTACTG 58.399 43.478 0.00 0.00 34.13 2.74
5807 6020 6.145535 CAGGCAAGAAAGTGTACTGATTTTC 58.854 40.000 0.00 0.00 31.43 2.29
5861 8281 5.772521 ACATTTAGGCAGCTAAAAACACTG 58.227 37.500 0.00 0.00 33.24 3.66
5866 8295 3.568430 AGGCAGCTAAAAACACTGTAACC 59.432 43.478 0.00 0.00 33.87 2.85
5889 8318 5.007430 CCTGATGTTTCATGTCAGCATAGTC 59.993 44.000 5.04 0.00 38.38 2.59
5894 8323 5.422012 TGTTTCATGTCAGCATAGTCTCCTA 59.578 40.000 0.00 0.00 33.30 2.94
5899 8328 5.584253 TGTCAGCATAGTCTCCTAGAAAC 57.416 43.478 0.00 0.00 0.00 2.78
6014 8445 6.151985 AGTCTGTTTGTTACATGACCACAAAA 59.848 34.615 17.47 10.66 41.00 2.44
6015 8446 6.809196 GTCTGTTTGTTACATGACCACAAAAA 59.191 34.615 17.47 13.65 41.00 1.94
6035 8466 5.413309 AAAAACACACACAAAGGGATTGA 57.587 34.783 0.00 0.00 41.85 2.57
6036 8467 5.612725 AAAACACACACAAAGGGATTGAT 57.387 34.783 0.00 0.00 41.85 2.57
6038 8469 4.589216 ACACACACAAAGGGATTGATTG 57.411 40.909 0.00 0.00 41.85 2.67
6041 8472 3.253188 ACACACAAAGGGATTGATTGACG 59.747 43.478 0.00 0.00 41.85 4.35
6043 8474 2.228582 CACAAAGGGATTGATTGACGCA 59.771 45.455 0.00 0.00 41.85 5.24
6044 8475 2.890311 ACAAAGGGATTGATTGACGCAA 59.110 40.909 0.00 0.00 41.85 4.85
6046 8477 2.198827 AGGGATTGATTGACGCAACA 57.801 45.000 0.00 0.00 0.00 3.33
6047 8478 2.726821 AGGGATTGATTGACGCAACAT 58.273 42.857 0.00 0.00 0.00 2.71
6048 8479 2.684881 AGGGATTGATTGACGCAACATC 59.315 45.455 0.00 0.00 0.00 3.06
6049 8480 2.223572 GGGATTGATTGACGCAACATCC 60.224 50.000 13.30 13.30 0.00 3.51
6050 8481 2.684881 GGATTGATTGACGCAACATCCT 59.315 45.455 13.88 0.00 0.00 3.24
6051 8482 3.876914 GGATTGATTGACGCAACATCCTA 59.123 43.478 13.88 0.00 0.00 2.94
6052 8483 4.335315 GGATTGATTGACGCAACATCCTAA 59.665 41.667 13.88 0.00 0.00 2.69
6053 8484 4.678509 TTGATTGACGCAACATCCTAAC 57.321 40.909 0.00 0.00 0.00 2.34
6054 8485 3.937814 TGATTGACGCAACATCCTAACT 58.062 40.909 0.00 0.00 0.00 2.24
6067 8498 6.018433 ACATCCTAACTGGCAAAATCCTAT 57.982 37.500 0.00 0.00 35.26 2.57
6080 8511 6.101997 GCAAAATCCTATCCAGAAACTTTGG 58.898 40.000 0.00 0.00 37.04 3.28
6085 8516 3.202151 CCTATCCAGAAACTTTGGCCCTA 59.798 47.826 0.00 0.00 35.62 3.53
6094 8525 1.002773 ACTTTGGCCCTACAAGTACCG 59.997 52.381 0.00 0.00 0.00 4.02
6128 8559 1.408422 GCCTTGATTGACGCAACAAC 58.592 50.000 0.00 0.00 32.50 3.32
6129 8560 1.673760 CCTTGATTGACGCAACAACG 58.326 50.000 0.00 0.00 39.50 4.10
6141 8572 0.109086 CAACAACGTGTGTGGGCAAA 60.109 50.000 0.00 0.00 40.60 3.68
6183 8619 6.713762 ACTCTCATATTTCTCTCAGAGTGG 57.286 41.667 0.36 0.00 39.28 4.00
6190 8626 0.972134 TCTCTCAGAGTGGCCAACAG 59.028 55.000 7.24 1.60 0.00 3.16
6194 8630 1.895798 CTCAGAGTGGCCAACAGACTA 59.104 52.381 7.24 0.00 0.00 2.59
6195 8631 2.300152 CTCAGAGTGGCCAACAGACTAA 59.700 50.000 7.24 0.00 0.00 2.24
6196 8632 2.703536 TCAGAGTGGCCAACAGACTAAA 59.296 45.455 7.24 0.00 0.00 1.85
6197 8633 2.808543 CAGAGTGGCCAACAGACTAAAC 59.191 50.000 7.24 0.00 0.00 2.01
6198 8634 2.438021 AGAGTGGCCAACAGACTAAACA 59.562 45.455 7.24 0.00 0.00 2.83
6199 8635 3.073062 AGAGTGGCCAACAGACTAAACAT 59.927 43.478 7.24 0.00 0.00 2.71
6200 8636 3.412386 AGTGGCCAACAGACTAAACATC 58.588 45.455 7.24 0.00 0.00 3.06
6201 8637 3.073062 AGTGGCCAACAGACTAAACATCT 59.927 43.478 7.24 0.00 0.00 2.90
6202 8638 3.437049 GTGGCCAACAGACTAAACATCTC 59.563 47.826 7.24 0.00 0.00 2.75
6203 8639 3.072330 TGGCCAACAGACTAAACATCTCA 59.928 43.478 0.61 0.00 0.00 3.27
6204 8640 4.263462 TGGCCAACAGACTAAACATCTCAT 60.263 41.667 0.61 0.00 0.00 2.90
6205 8641 5.045942 TGGCCAACAGACTAAACATCTCATA 60.046 40.000 0.61 0.00 0.00 2.15
6206 8642 6.058183 GGCCAACAGACTAAACATCTCATAT 58.942 40.000 0.00 0.00 0.00 1.78
6207 8643 6.543831 GGCCAACAGACTAAACATCTCATATT 59.456 38.462 0.00 0.00 0.00 1.28
6208 8644 7.067494 GGCCAACAGACTAAACATCTCATATTT 59.933 37.037 0.00 0.00 0.00 1.40
6209 8645 8.125448 GCCAACAGACTAAACATCTCATATTTC 58.875 37.037 0.00 0.00 0.00 2.17
6210 8646 9.388506 CCAACAGACTAAACATCTCATATTTCT 57.611 33.333 0.00 0.00 0.00 2.52
6219 8655 8.945481 AAACATCTCATATTTCTCTCAGAGTG 57.055 34.615 0.36 0.00 0.00 3.51
6220 8656 7.053316 ACATCTCATATTTCTCTCAGAGTGG 57.947 40.000 0.36 0.00 0.00 4.00
6221 8657 5.528043 TCTCATATTTCTCTCAGAGTGGC 57.472 43.478 0.36 0.00 0.00 5.01
6222 8658 4.343526 TCTCATATTTCTCTCAGAGTGGCC 59.656 45.833 0.36 0.00 0.00 5.36
6223 8659 4.033009 TCATATTTCTCTCAGAGTGGCCA 58.967 43.478 0.00 0.00 0.00 5.36
6224 8660 4.471025 TCATATTTCTCTCAGAGTGGCCAA 59.529 41.667 7.24 0.00 0.00 4.52
6225 8661 2.550830 TTTCTCTCAGAGTGGCCAAC 57.449 50.000 7.24 4.78 0.00 3.77
6226 8662 1.423584 TTCTCTCAGAGTGGCCAACA 58.576 50.000 7.24 0.00 0.00 3.33
6227 8663 0.972134 TCTCTCAGAGTGGCCAACAG 59.028 55.000 7.24 1.60 0.00 3.16
6228 8664 0.972134 CTCTCAGAGTGGCCAACAGA 59.028 55.000 7.24 6.56 0.00 3.41
6229 8665 0.681733 TCTCAGAGTGGCCAACAGAC 59.318 55.000 7.24 0.00 0.00 3.51
6230 8666 0.683973 CTCAGAGTGGCCAACAGACT 59.316 55.000 7.24 0.00 0.00 3.24
6231 8667 1.895798 CTCAGAGTGGCCAACAGACTA 59.104 52.381 7.24 0.00 0.00 2.59
6269 8705 0.895530 TAGGCCTTCCTGTTGACTCG 59.104 55.000 12.58 0.00 44.08 4.18
6277 8713 1.884579 TCCTGTTGACTCGTACCAGAC 59.115 52.381 0.00 0.00 0.00 3.51
6278 8714 1.887198 CCTGTTGACTCGTACCAGACT 59.113 52.381 0.00 0.00 0.00 3.24
6305 8741 2.964978 GTTCCACCATGCTGCCAC 59.035 61.111 0.00 0.00 0.00 5.01
6306 8742 1.604593 GTTCCACCATGCTGCCACT 60.605 57.895 0.00 0.00 0.00 4.00
6307 8743 1.604308 TTCCACCATGCTGCCACTG 60.604 57.895 0.00 0.00 0.00 3.66
6328 8764 2.524394 AGAGTGTGGACCAGGCGT 60.524 61.111 0.00 0.00 0.00 5.68
6360 8796 2.440796 ATCCCCAGCCATGCGTTG 60.441 61.111 0.00 0.00 0.00 4.10
6364 8800 1.750018 CCCAGCCATGCGTTGATCA 60.750 57.895 0.00 0.00 0.00 2.92
6366 8802 1.028330 CCAGCCATGCGTTGATCACT 61.028 55.000 0.00 0.00 0.00 3.41
6370 8806 1.742761 CCATGCGTTGATCACTTCCT 58.257 50.000 0.00 0.00 0.00 3.36
6384 8820 5.860941 TCACTTCCTAAATCCTAGCAGAG 57.139 43.478 0.00 0.00 0.00 3.35
6408 8844 3.004106 AGCGGCATTTGAAGATTAGATGC 59.996 43.478 1.45 0.00 41.67 3.91
6413 8849 2.309528 TTGAAGATTAGATGCGCCGT 57.690 45.000 4.18 0.00 0.00 5.68
6449 8885 3.502191 TTTGCACAACTGACAAAGACC 57.498 42.857 0.00 0.00 0.00 3.85
6456 8892 4.079253 ACAACTGACAAAGACCACAGTTT 58.921 39.130 0.00 0.00 46.69 2.66
6468 8904 2.513753 CCACAGTTTGGTCAATGGCTA 58.486 47.619 0.00 0.00 41.10 3.93
6496 8938 2.693591 CCAATCTTGCAGAATGAGCCAT 59.306 45.455 3.63 0.00 39.69 4.40
6512 8954 6.845758 TGAGCCATGAGAAAAATCTGATTT 57.154 33.333 9.76 9.76 0.00 2.17
6543 8985 4.665009 AGCCCATATTTTCTAGACCATCCA 59.335 41.667 0.00 0.00 0.00 3.41
6544 8986 5.314306 AGCCCATATTTTCTAGACCATCCAT 59.686 40.000 0.00 0.00 0.00 3.41
6545 8987 5.649831 GCCCATATTTTCTAGACCATCCATC 59.350 44.000 0.00 0.00 0.00 3.51
6546 8988 6.183347 CCCATATTTTCTAGACCATCCATCC 58.817 44.000 0.00 0.00 0.00 3.51
6559 9001 1.825191 CCATCCTTGGCATGTCCGG 60.825 63.158 0.00 0.00 35.85 5.14
6573 9017 0.946221 GTCCGGCTATCAATCCTGCG 60.946 60.000 0.00 0.00 0.00 5.18
6575 9019 0.249868 CCGGCTATCAATCCTGCGAA 60.250 55.000 0.00 0.00 0.00 4.70
6598 9042 1.541147 GCAATTGCACTCTGTAAGCCA 59.459 47.619 25.36 0.00 41.59 4.75
6599 9043 2.415090 GCAATTGCACTCTGTAAGCCAG 60.415 50.000 25.36 0.00 40.84 4.85
6600 9044 1.457346 ATTGCACTCTGTAAGCCAGC 58.543 50.000 0.00 0.00 41.25 4.85
6601 9045 0.606401 TTGCACTCTGTAAGCCAGCC 60.606 55.000 0.00 0.00 41.25 4.85
6602 9046 2.103042 GCACTCTGTAAGCCAGCCG 61.103 63.158 0.00 0.00 41.25 5.52
6603 9047 2.103042 CACTCTGTAAGCCAGCCGC 61.103 63.158 0.00 0.00 41.25 6.53
6604 9048 2.887568 CTCTGTAAGCCAGCCGCG 60.888 66.667 0.00 0.00 44.76 6.46
6605 9049 4.451150 TCTGTAAGCCAGCCGCGG 62.451 66.667 24.05 24.05 44.76 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.449251 AACGGAAACTAAATACAAACCTAACA 57.551 30.769 0.00 0.00 0.00 2.41
1 2 9.385902 GAAACGGAAACTAAATACAAACCTAAC 57.614 33.333 0.00 0.00 0.00 2.34
2 3 9.341078 AGAAACGGAAACTAAATACAAACCTAA 57.659 29.630 0.00 0.00 0.00 2.69
3 4 8.907222 AGAAACGGAAACTAAATACAAACCTA 57.093 30.769 0.00 0.00 0.00 3.08
4 5 7.499895 TGAGAAACGGAAACTAAATACAAACCT 59.500 33.333 0.00 0.00 0.00 3.50
5 6 7.641760 TGAGAAACGGAAACTAAATACAAACC 58.358 34.615 0.00 0.00 0.00 3.27
6 7 9.113876 CATGAGAAACGGAAACTAAATACAAAC 57.886 33.333 0.00 0.00 0.00 2.93
7 8 7.806014 GCATGAGAAACGGAAACTAAATACAAA 59.194 33.333 0.00 0.00 0.00 2.83
8 9 7.041030 TGCATGAGAAACGGAAACTAAATACAA 60.041 33.333 0.00 0.00 0.00 2.41
9 10 6.428465 TGCATGAGAAACGGAAACTAAATACA 59.572 34.615 0.00 0.00 0.00 2.29
10 11 6.837992 TGCATGAGAAACGGAAACTAAATAC 58.162 36.000 0.00 0.00 0.00 1.89
11 12 7.624360 ATGCATGAGAAACGGAAACTAAATA 57.376 32.000 0.00 0.00 0.00 1.40
12 13 5.957842 TGCATGAGAAACGGAAACTAAAT 57.042 34.783 0.00 0.00 0.00 1.40
13 14 5.957842 ATGCATGAGAAACGGAAACTAAA 57.042 34.783 0.00 0.00 0.00 1.85
14 15 5.390461 CGAATGCATGAGAAACGGAAACTAA 60.390 40.000 0.00 0.00 0.00 2.24
15 16 4.092821 CGAATGCATGAGAAACGGAAACTA 59.907 41.667 0.00 0.00 0.00 2.24
16 17 3.120199 CGAATGCATGAGAAACGGAAACT 60.120 43.478 0.00 0.00 0.00 2.66
17 18 3.163594 CGAATGCATGAGAAACGGAAAC 58.836 45.455 0.00 0.00 0.00 2.78
18 19 2.414029 GCGAATGCATGAGAAACGGAAA 60.414 45.455 0.00 0.00 42.15 3.13
19 20 1.130373 GCGAATGCATGAGAAACGGAA 59.870 47.619 0.00 0.00 42.15 4.30
20 21 0.726827 GCGAATGCATGAGAAACGGA 59.273 50.000 0.00 0.00 42.15 4.69
21 22 3.224955 GCGAATGCATGAGAAACGG 57.775 52.632 0.00 0.00 42.15 4.44
46 47 7.883229 ACACAATGAGAAACGAAAACTTTTT 57.117 28.000 0.00 0.00 0.00 1.94
47 48 7.883229 AACACAATGAGAAACGAAAACTTTT 57.117 28.000 0.00 0.00 0.00 2.27
48 49 7.883229 AAACACAATGAGAAACGAAAACTTT 57.117 28.000 0.00 0.00 0.00 2.66
49 50 7.883229 AAAACACAATGAGAAACGAAAACTT 57.117 28.000 0.00 0.00 0.00 2.66
50 51 7.201316 CGAAAAACACAATGAGAAACGAAAACT 60.201 33.333 0.00 0.00 0.00 2.66
51 52 6.887247 CGAAAAACACAATGAGAAACGAAAAC 59.113 34.615 0.00 0.00 0.00 2.43
52 53 6.802348 TCGAAAAACACAATGAGAAACGAAAA 59.198 30.769 0.00 0.00 0.00 2.29
53 54 6.315551 TCGAAAAACACAATGAGAAACGAAA 58.684 32.000 0.00 0.00 0.00 3.46
54 55 5.870444 TCGAAAAACACAATGAGAAACGAA 58.130 33.333 0.00 0.00 0.00 3.85
55 56 5.472320 TCGAAAAACACAATGAGAAACGA 57.528 34.783 0.00 0.00 0.00 3.85
56 57 6.732181 ATTCGAAAAACACAATGAGAAACG 57.268 33.333 0.00 0.00 0.00 3.60
57 58 7.845622 CCAAATTCGAAAAACACAATGAGAAAC 59.154 33.333 0.00 0.00 0.00 2.78
58 59 7.761704 TCCAAATTCGAAAAACACAATGAGAAA 59.238 29.630 0.00 0.00 0.00 2.52
59 60 7.261325 TCCAAATTCGAAAAACACAATGAGAA 58.739 30.769 0.00 0.00 0.00 2.87
60 61 6.800543 TCCAAATTCGAAAAACACAATGAGA 58.199 32.000 0.00 0.00 0.00 3.27
61 62 7.596248 AGATCCAAATTCGAAAAACACAATGAG 59.404 33.333 0.00 0.00 0.00 2.90
62 63 7.381948 CAGATCCAAATTCGAAAAACACAATGA 59.618 33.333 0.00 0.00 0.00 2.57
63 64 7.381948 TCAGATCCAAATTCGAAAAACACAATG 59.618 33.333 0.00 0.00 0.00 2.82
64 65 7.432869 TCAGATCCAAATTCGAAAAACACAAT 58.567 30.769 0.00 0.00 0.00 2.71
65 66 6.800543 TCAGATCCAAATTCGAAAAACACAA 58.199 32.000 0.00 0.00 0.00 3.33
66 67 6.384258 TCAGATCCAAATTCGAAAAACACA 57.616 33.333 0.00 0.00 0.00 3.72
67 68 7.873739 ATTCAGATCCAAATTCGAAAAACAC 57.126 32.000 0.00 0.00 0.00 3.32
68 69 8.885494 AAATTCAGATCCAAATTCGAAAAACA 57.115 26.923 0.00 0.00 0.00 2.83
73 74 9.638239 CCTTAAAAATTCAGATCCAAATTCGAA 57.362 29.630 0.00 0.00 0.00 3.71
74 75 8.250332 CCCTTAAAAATTCAGATCCAAATTCGA 58.750 33.333 4.00 0.00 0.00 3.71
75 76 8.034804 ACCCTTAAAAATTCAGATCCAAATTCG 58.965 33.333 4.00 0.00 0.00 3.34
76 77 9.371136 GACCCTTAAAAATTCAGATCCAAATTC 57.629 33.333 4.00 0.00 0.00 2.17
77 78 8.879227 TGACCCTTAAAAATTCAGATCCAAATT 58.121 29.630 0.00 0.00 0.00 1.82
78 79 8.434589 TGACCCTTAAAAATTCAGATCCAAAT 57.565 30.769 0.00 0.00 0.00 2.32
79 80 7.847711 TGACCCTTAAAAATTCAGATCCAAA 57.152 32.000 0.00 0.00 0.00 3.28
80 81 9.189156 CTATGACCCTTAAAAATTCAGATCCAA 57.811 33.333 0.00 0.00 0.00 3.53
81 82 7.779798 CCTATGACCCTTAAAAATTCAGATCCA 59.220 37.037 0.00 0.00 0.00 3.41
82 83 7.255625 GCCTATGACCCTTAAAAATTCAGATCC 60.256 40.741 0.00 0.00 0.00 3.36
83 84 7.520614 CGCCTATGACCCTTAAAAATTCAGATC 60.521 40.741 0.00 0.00 0.00 2.75
84 85 6.263168 CGCCTATGACCCTTAAAAATTCAGAT 59.737 38.462 0.00 0.00 0.00 2.90
85 86 5.588648 CGCCTATGACCCTTAAAAATTCAGA 59.411 40.000 0.00 0.00 0.00 3.27
86 87 5.733373 GCGCCTATGACCCTTAAAAATTCAG 60.733 44.000 0.00 0.00 0.00 3.02
87 88 4.097286 GCGCCTATGACCCTTAAAAATTCA 59.903 41.667 0.00 0.00 0.00 2.57
88 89 4.607955 GCGCCTATGACCCTTAAAAATTC 58.392 43.478 0.00 0.00 0.00 2.17
89 90 3.066203 CGCGCCTATGACCCTTAAAAATT 59.934 43.478 0.00 0.00 0.00 1.82
90 91 2.616842 CGCGCCTATGACCCTTAAAAAT 59.383 45.455 0.00 0.00 0.00 1.82
91 92 2.011222 CGCGCCTATGACCCTTAAAAA 58.989 47.619 0.00 0.00 0.00 1.94
92 93 1.658994 CGCGCCTATGACCCTTAAAA 58.341 50.000 0.00 0.00 0.00 1.52
93 94 0.812412 GCGCGCCTATGACCCTTAAA 60.812 55.000 23.24 0.00 0.00 1.52
94 95 1.227438 GCGCGCCTATGACCCTTAA 60.227 57.895 23.24 0.00 0.00 1.85
95 96 1.754380 ATGCGCGCCTATGACCCTTA 61.754 55.000 30.77 4.99 0.00 2.69
96 97 2.996168 GATGCGCGCCTATGACCCTT 62.996 60.000 30.77 0.00 0.00 3.95
97 98 3.521529 GATGCGCGCCTATGACCCT 62.522 63.158 30.77 1.08 0.00 4.34
98 99 2.996168 AAGATGCGCGCCTATGACCC 62.996 60.000 30.77 5.43 0.00 4.46
99 100 0.319555 TAAGATGCGCGCCTATGACC 60.320 55.000 30.77 6.24 0.00 4.02
100 101 1.391485 CATAAGATGCGCGCCTATGAC 59.609 52.381 30.77 12.91 0.00 3.06
101 102 1.272212 TCATAAGATGCGCGCCTATGA 59.728 47.619 30.77 27.36 0.00 2.15
102 103 1.713597 TCATAAGATGCGCGCCTATG 58.286 50.000 30.77 25.77 0.00 2.23
103 104 2.069273 GTTCATAAGATGCGCGCCTAT 58.931 47.619 30.77 17.17 0.00 2.57
104 105 1.202475 TGTTCATAAGATGCGCGCCTA 60.202 47.619 30.77 11.98 0.00 3.93
105 106 0.461870 TGTTCATAAGATGCGCGCCT 60.462 50.000 30.77 20.77 0.00 5.52
106 107 0.588252 ATGTTCATAAGATGCGCGCC 59.412 50.000 30.77 14.69 0.00 6.53
107 108 2.389713 AATGTTCATAAGATGCGCGC 57.610 45.000 27.26 27.26 0.00 6.86
108 109 6.974677 ATTTTAATGTTCATAAGATGCGCG 57.025 33.333 0.00 0.00 0.00 6.86
109 110 9.663904 TTCTATTTTAATGTTCATAAGATGCGC 57.336 29.630 0.00 0.00 0.00 6.09
136 137 9.991906 ACTTGTAGCAGTACTTAAATGTTCTAA 57.008 29.630 0.00 0.00 0.00 2.10
137 138 9.991906 AACTTGTAGCAGTACTTAAATGTTCTA 57.008 29.630 0.00 0.00 0.00 2.10
138 139 8.904099 AACTTGTAGCAGTACTTAAATGTTCT 57.096 30.769 0.00 0.00 0.00 3.01
139 140 9.946165 AAAACTTGTAGCAGTACTTAAATGTTC 57.054 29.630 0.00 0.00 0.00 3.18
148 149 8.784043 CCAAATTCTAAAACTTGTAGCAGTACT 58.216 33.333 0.00 0.00 0.00 2.73
149 150 8.780249 TCCAAATTCTAAAACTTGTAGCAGTAC 58.220 33.333 0.00 0.00 0.00 2.73
150 151 8.911918 TCCAAATTCTAAAACTTGTAGCAGTA 57.088 30.769 0.00 0.00 0.00 2.74
151 152 7.522236 GCTCCAAATTCTAAAACTTGTAGCAGT 60.522 37.037 0.00 0.00 32.71 4.40
152 153 6.803807 GCTCCAAATTCTAAAACTTGTAGCAG 59.196 38.462 0.00 0.00 32.71 4.24
153 154 6.264292 TGCTCCAAATTCTAAAACTTGTAGCA 59.736 34.615 0.00 0.00 38.09 3.49
154 155 6.582672 GTGCTCCAAATTCTAAAACTTGTAGC 59.417 38.462 0.00 0.00 32.97 3.58
155 156 6.797033 CGTGCTCCAAATTCTAAAACTTGTAG 59.203 38.462 0.00 0.00 0.00 2.74
156 157 6.293735 CCGTGCTCCAAATTCTAAAACTTGTA 60.294 38.462 0.00 0.00 0.00 2.41
157 158 5.507315 CCGTGCTCCAAATTCTAAAACTTGT 60.507 40.000 0.00 0.00 0.00 3.16
158 159 4.917415 CCGTGCTCCAAATTCTAAAACTTG 59.083 41.667 0.00 0.00 0.00 3.16
159 160 4.825085 TCCGTGCTCCAAATTCTAAAACTT 59.175 37.500 0.00 0.00 0.00 2.66
160 161 4.394729 TCCGTGCTCCAAATTCTAAAACT 58.605 39.130 0.00 0.00 0.00 2.66
161 162 4.759516 TCCGTGCTCCAAATTCTAAAAC 57.240 40.909 0.00 0.00 0.00 2.43
162 163 4.825085 ACTTCCGTGCTCCAAATTCTAAAA 59.175 37.500 0.00 0.00 0.00 1.52
163 164 4.394729 ACTTCCGTGCTCCAAATTCTAAA 58.605 39.130 0.00 0.00 0.00 1.85
164 165 4.015872 ACTTCCGTGCTCCAAATTCTAA 57.984 40.909 0.00 0.00 0.00 2.10
165 166 3.695830 ACTTCCGTGCTCCAAATTCTA 57.304 42.857 0.00 0.00 0.00 2.10
166 167 2.568623 ACTTCCGTGCTCCAAATTCT 57.431 45.000 0.00 0.00 0.00 2.40
167 168 2.093783 CGTACTTCCGTGCTCCAAATTC 59.906 50.000 0.00 0.00 0.00 2.17
168 169 2.073816 CGTACTTCCGTGCTCCAAATT 58.926 47.619 0.00 0.00 0.00 1.82
169 170 1.001633 ACGTACTTCCGTGCTCCAAAT 59.998 47.619 0.00 0.00 40.08 2.32
170 171 0.390124 ACGTACTTCCGTGCTCCAAA 59.610 50.000 0.00 0.00 40.08 3.28
171 172 2.043625 ACGTACTTCCGTGCTCCAA 58.956 52.632 0.00 0.00 40.08 3.53
172 173 3.767816 ACGTACTTCCGTGCTCCA 58.232 55.556 0.00 0.00 40.08 3.86
178 179 2.549633 CGTATTCCACGTACTTCCGT 57.450 50.000 0.00 0.00 45.82 4.69
184 185 8.930462 ATCAGATGATGCCGTATTCCACGTAC 62.930 46.154 0.00 0.00 40.16 3.67
185 186 7.013007 ATCAGATGATGCCGTATTCCACGTA 62.013 44.000 0.00 0.00 40.16 3.57
186 187 6.305157 ATCAGATGATGCCGTATTCCACGT 62.305 45.833 0.00 0.00 40.16 4.49
187 188 3.862264 ATCAGATGATGCCGTATTCCACG 60.862 47.826 0.00 0.00 40.86 4.94
188 189 3.111853 TCAGATGATGCCGTATTCCAC 57.888 47.619 0.00 0.00 0.00 4.02
189 190 5.682234 ATATCAGATGATGCCGTATTCCA 57.318 39.130 5.58 0.00 36.05 3.53
190 191 6.992063 AAATATCAGATGATGCCGTATTCC 57.008 37.500 5.58 0.00 36.05 3.01
191 192 7.414540 GGGAAAATATCAGATGATGCCGTATTC 60.415 40.741 5.58 2.60 36.05 1.75
192 193 6.375455 GGGAAAATATCAGATGATGCCGTATT 59.625 38.462 5.58 0.00 36.05 1.89
193 194 5.882557 GGGAAAATATCAGATGATGCCGTAT 59.117 40.000 5.58 0.00 36.05 3.06
194 195 5.245531 GGGAAAATATCAGATGATGCCGTA 58.754 41.667 5.58 0.00 36.05 4.02
195 196 4.074970 GGGAAAATATCAGATGATGCCGT 58.925 43.478 5.58 0.00 36.05 5.68
196 197 3.125829 CGGGAAAATATCAGATGATGCCG 59.874 47.826 5.58 2.58 36.05 5.69
197 198 4.074970 ACGGGAAAATATCAGATGATGCC 58.925 43.478 5.58 0.00 36.05 4.40
198 199 4.614535 GCACGGGAAAATATCAGATGATGC 60.615 45.833 5.58 0.00 36.05 3.91
199 200 4.377738 CGCACGGGAAAATATCAGATGATG 60.378 45.833 5.58 0.00 36.05 3.07
200 201 3.748048 CGCACGGGAAAATATCAGATGAT 59.252 43.478 0.00 0.31 38.51 2.45
201 202 3.130633 CGCACGGGAAAATATCAGATGA 58.869 45.455 0.00 0.00 0.00 2.92
202 203 3.130633 TCGCACGGGAAAATATCAGATG 58.869 45.455 0.00 0.00 0.00 2.90
203 204 3.469008 TCGCACGGGAAAATATCAGAT 57.531 42.857 0.00 0.00 0.00 2.90
204 205 2.933906 GTTCGCACGGGAAAATATCAGA 59.066 45.455 0.00 0.00 0.00 3.27
205 206 2.285602 CGTTCGCACGGGAAAATATCAG 60.286 50.000 0.00 0.00 43.16 2.90
206 207 1.661617 CGTTCGCACGGGAAAATATCA 59.338 47.619 0.00 0.00 43.16 2.15
207 208 2.362668 CGTTCGCACGGGAAAATATC 57.637 50.000 0.00 0.00 43.16 1.63
218 219 3.573489 CTTTCCGCACCGTTCGCAC 62.573 63.158 0.00 0.00 0.00 5.34
219 220 3.342627 CTTTCCGCACCGTTCGCA 61.343 61.111 0.00 0.00 0.00 5.10
220 221 3.011760 CTCTTTCCGCACCGTTCGC 62.012 63.158 0.00 0.00 0.00 4.70
221 222 3.011760 GCTCTTTCCGCACCGTTCG 62.012 63.158 0.00 0.00 0.00 3.95
222 223 2.861006 GCTCTTTCCGCACCGTTC 59.139 61.111 0.00 0.00 0.00 3.95
223 224 3.041940 CGCTCTTTCCGCACCGTT 61.042 61.111 0.00 0.00 0.00 4.44
230 231 2.697425 CGTGATGCGCTCTTTCCG 59.303 61.111 9.73 0.00 0.00 4.30
231 232 3.093278 CCGTGATGCGCTCTTTCC 58.907 61.111 9.73 0.00 39.71 3.13
232 233 2.401195 GCCGTGATGCGCTCTTTC 59.599 61.111 9.73 0.85 39.71 2.62
260 261 4.692475 ACGTTGTACCTGCCCGCC 62.692 66.667 0.00 0.00 0.00 6.13
261 262 3.419759 CACGTTGTACCTGCCCGC 61.420 66.667 0.00 0.00 0.00 6.13
262 263 2.025418 GTCACGTTGTACCTGCCCG 61.025 63.158 0.00 0.00 0.00 6.13
263 264 1.670083 GGTCACGTTGTACCTGCCC 60.670 63.158 4.59 0.00 32.72 5.36
264 265 1.670083 GGGTCACGTTGTACCTGCC 60.670 63.158 10.44 0.00 35.97 4.85
265 266 2.025418 CGGGTCACGTTGTACCTGC 61.025 63.158 10.44 0.00 35.43 4.85
266 267 4.255126 CGGGTCACGTTGTACCTG 57.745 61.111 10.44 8.28 37.93 4.00
282 283 1.587034 GTTTCTTATCGCCGAGGAACG 59.413 52.381 0.00 0.00 42.18 3.95
283 284 2.603560 CTGTTTCTTATCGCCGAGGAAC 59.396 50.000 0.00 0.00 32.98 3.62
284 285 2.418197 CCTGTTTCTTATCGCCGAGGAA 60.418 50.000 0.00 0.00 0.00 3.36
285 286 1.136305 CCTGTTTCTTATCGCCGAGGA 59.864 52.381 0.00 0.00 0.00 3.71
286 287 1.136305 TCCTGTTTCTTATCGCCGAGG 59.864 52.381 0.00 0.00 0.00 4.63
287 288 2.579207 TCCTGTTTCTTATCGCCGAG 57.421 50.000 0.00 0.00 0.00 4.63
288 289 2.613691 GTTCCTGTTTCTTATCGCCGA 58.386 47.619 0.00 0.00 0.00 5.54
289 290 1.664151 GGTTCCTGTTTCTTATCGCCG 59.336 52.381 0.00 0.00 0.00 6.46
290 291 2.014857 GGGTTCCTGTTTCTTATCGCC 58.985 52.381 0.00 0.00 0.00 5.54
291 292 2.706890 TGGGTTCCTGTTTCTTATCGC 58.293 47.619 0.00 0.00 0.00 4.58
292 293 4.324267 ACTTGGGTTCCTGTTTCTTATCG 58.676 43.478 0.00 0.00 0.00 2.92
293 294 6.255596 GAACTTGGGTTCCTGTTTCTTATC 57.744 41.667 0.00 0.00 44.24 1.75
311 312 0.179094 TGTCGTGCAAGTCGGAACTT 60.179 50.000 0.00 0.00 46.80 2.66
312 313 0.874607 GTGTCGTGCAAGTCGGAACT 60.875 55.000 0.00 0.00 37.32 3.01
313 314 1.563173 GTGTCGTGCAAGTCGGAAC 59.437 57.895 0.00 0.00 0.00 3.62
314 315 1.947146 CGTGTCGTGCAAGTCGGAA 60.947 57.895 0.00 0.00 0.00 4.30
315 316 2.339100 TTCGTGTCGTGCAAGTCGGA 62.339 55.000 0.00 0.00 0.00 4.55
316 317 1.876453 CTTCGTGTCGTGCAAGTCGG 61.876 60.000 0.00 0.00 0.00 4.79
317 318 1.482955 CTTCGTGTCGTGCAAGTCG 59.517 57.895 0.00 4.21 0.00 4.18
318 319 0.596600 TCCTTCGTGTCGTGCAAGTC 60.597 55.000 0.00 0.00 0.00 3.01
319 320 0.179094 TTCCTTCGTGTCGTGCAAGT 60.179 50.000 0.00 0.00 0.00 3.16
320 321 0.232303 GTTCCTTCGTGTCGTGCAAG 59.768 55.000 0.00 0.00 0.00 4.01
321 322 1.155424 GGTTCCTTCGTGTCGTGCAA 61.155 55.000 0.00 0.00 0.00 4.08
322 323 1.593209 GGTTCCTTCGTGTCGTGCA 60.593 57.895 0.00 0.00 0.00 4.57
323 324 1.155424 TTGGTTCCTTCGTGTCGTGC 61.155 55.000 0.00 0.00 0.00 5.34
324 325 0.859232 CTTGGTTCCTTCGTGTCGTG 59.141 55.000 0.00 0.00 0.00 4.35
325 326 0.748450 TCTTGGTTCCTTCGTGTCGT 59.252 50.000 0.00 0.00 0.00 4.34
326 327 2.080286 ATCTTGGTTCCTTCGTGTCG 57.920 50.000 0.00 0.00 0.00 4.35
327 328 6.202954 CCATAATATCTTGGTTCCTTCGTGTC 59.797 42.308 0.00 0.00 0.00 3.67
328 329 6.055588 CCATAATATCTTGGTTCCTTCGTGT 58.944 40.000 0.00 0.00 0.00 4.49
329 330 5.049405 GCCATAATATCTTGGTTCCTTCGTG 60.049 44.000 5.93 0.00 35.34 4.35
330 331 5.063880 GCCATAATATCTTGGTTCCTTCGT 58.936 41.667 5.93 0.00 35.34 3.85
331 332 5.063204 TGCCATAATATCTTGGTTCCTTCG 58.937 41.667 5.93 0.00 35.34 3.79
332 333 5.048434 GCTGCCATAATATCTTGGTTCCTTC 60.048 44.000 5.93 0.00 35.34 3.46
333 334 4.829492 GCTGCCATAATATCTTGGTTCCTT 59.171 41.667 5.93 0.00 35.34 3.36
334 335 4.141181 TGCTGCCATAATATCTTGGTTCCT 60.141 41.667 0.00 0.00 35.34 3.36
335 336 4.144297 TGCTGCCATAATATCTTGGTTCC 58.856 43.478 0.00 0.00 35.34 3.62
336 337 4.320788 GCTGCTGCCATAATATCTTGGTTC 60.321 45.833 3.85 0.00 35.34 3.62
349 350 4.790962 CCGAGGTGCTGCTGCCAT 62.791 66.667 13.47 2.03 38.71 4.40
358 359 7.699391 GGTATTATTAAAAAGAAACCGAGGTGC 59.301 37.037 0.00 0.00 0.00 5.01
377 378 7.226720 CGCTGTTCCTCAACTTTATGGTATTAT 59.773 37.037 0.00 0.00 33.17 1.28
393 394 0.383949 TTGTTTTGCCGCTGTTCCTC 59.616 50.000 0.00 0.00 0.00 3.71
503 505 4.260172 GCGTTTTGGGAGAAAACAACAATG 60.260 41.667 9.89 0.00 39.42 2.82
576 580 7.730364 AGTTCACGTAAAAGAAAGTCATCAT 57.270 32.000 0.00 0.00 0.00 2.45
591 602 9.773328 GTACAGTGTACAATAATAGTTCACGTA 57.227 33.333 25.28 0.00 40.70 3.57
606 617 5.071250 AGTTCCCTGAAATGTACAGTGTACA 59.929 40.000 32.40 32.40 34.04 2.90
607 618 5.548406 AGTTCCCTGAAATGTACAGTGTAC 58.452 41.667 23.85 23.85 34.04 2.90
608 619 5.818678 AGTTCCCTGAAATGTACAGTGTA 57.181 39.130 0.33 0.00 34.04 2.90
609 620 4.706842 AGTTCCCTGAAATGTACAGTGT 57.293 40.909 0.33 0.00 34.04 3.55
610 621 8.964476 ATAATAGTTCCCTGAAATGTACAGTG 57.036 34.615 0.33 0.00 34.04 3.66
635 646 9.475620 ACTACAGTGCTGCCAGTATATATATAA 57.524 33.333 3.96 0.00 30.38 0.98
636 647 9.475620 AACTACAGTGCTGCCAGTATATATATA 57.524 33.333 0.00 0.00 31.47 0.86
637 648 7.962995 ACTACAGTGCTGCCAGTATATATAT 57.037 36.000 0.00 0.00 30.38 0.86
638 649 7.776618 AACTACAGTGCTGCCAGTATATATA 57.223 36.000 0.00 0.00 31.47 0.86
639 650 6.672266 AACTACAGTGCTGCCAGTATATAT 57.328 37.500 0.00 0.00 31.47 0.86
660 674 8.713737 ATTATTGTTCCTCTTAAGTCGGTAAC 57.286 34.615 1.63 10.50 0.00 2.50
680 694 7.060421 CAGTTGGGCCCCGATATATTATTATT 58.940 38.462 22.27 0.00 0.00 1.40
681 695 6.601332 CAGTTGGGCCCCGATATATTATTAT 58.399 40.000 22.27 0.00 0.00 1.28
682 696 5.630539 GCAGTTGGGCCCCGATATATTATTA 60.631 44.000 22.27 0.00 0.00 0.98
742 756 1.271434 GGGTGAGACTGGAGTTTTCCC 60.271 57.143 0.00 0.00 43.33 3.97
751 765 3.391382 GGTCCGGGGTGAGACTGG 61.391 72.222 0.00 0.00 35.63 4.00
786 800 4.278513 TTTGCGGTGGGGTCTGGG 62.279 66.667 0.00 0.00 0.00 4.45
840 854 3.844090 GGTGAGAGAGGCGGGCTC 61.844 72.222 22.73 22.73 0.00 4.70
886 900 2.202690 GTAATTTTGCGGCCGGGC 60.203 61.111 29.38 20.04 0.00 6.13
979 993 1.004918 AAGAACGGAACAGGGCGAG 60.005 57.895 0.00 0.00 0.00 5.03
999 1028 3.172106 TGGCGTGGTGGGGAAGAA 61.172 61.111 0.00 0.00 0.00 2.52
1260 1298 3.215597 ATCGAACACCACGACGGCA 62.216 57.895 0.00 0.00 42.37 5.69
1262 1300 2.150218 CGATCGAACACCACGACGG 61.150 63.158 10.26 0.00 42.37 4.79
1266 1304 2.508439 CCCCGATCGAACACCACG 60.508 66.667 18.66 0.00 0.00 4.94
1320 1358 2.191354 GAAACGCCAAACCCTACGCC 62.191 60.000 0.00 0.00 0.00 5.68
1397 1436 1.668151 GGAGTCGGACCACAAGCAC 60.668 63.158 4.14 0.00 0.00 4.40
1410 1449 1.003331 CATCGCGACTAGACAGGAGTC 60.003 57.143 12.93 0.00 45.31 3.36
1412 1451 0.309302 CCATCGCGACTAGACAGGAG 59.691 60.000 12.93 0.00 0.00 3.69
1496 1536 0.178981 CCCACCACATCCCATCATCC 60.179 60.000 0.00 0.00 0.00 3.51
1533 1573 7.922811 AGAAAGAACAATCCATTCTTCAACAAC 59.077 33.333 0.75 0.00 43.91 3.32
1554 1594 8.202137 TCGGATACACCCTTATAGAAAAGAAAG 58.798 37.037 0.00 0.00 34.64 2.62
1561 1601 5.070823 ACCTCGGATACACCCTTATAGAA 57.929 43.478 0.00 0.00 34.64 2.10
1563 1603 4.404640 TGACCTCGGATACACCCTTATAG 58.595 47.826 0.00 0.00 34.64 1.31
1564 1604 4.105217 TCTGACCTCGGATACACCCTTATA 59.895 45.833 0.00 0.00 34.64 0.98
1565 1605 3.117246 TCTGACCTCGGATACACCCTTAT 60.117 47.826 0.00 0.00 34.64 1.73
1566 1606 2.242965 TCTGACCTCGGATACACCCTTA 59.757 50.000 0.00 0.00 34.64 2.69
1567 1607 1.006758 TCTGACCTCGGATACACCCTT 59.993 52.381 0.00 0.00 34.64 3.95
1627 1669 3.717350 CGTCAGTTAACGGGTGAAATC 57.283 47.619 5.89 0.00 38.96 2.17
1679 1721 4.567159 CGCCCTAACTGTAATCTGAACTTC 59.433 45.833 0.00 0.00 0.00 3.01
1707 1756 4.997395 TCTTTGGTTCTTTACTAGCAGCAG 59.003 41.667 0.00 0.00 29.49 4.24
1726 1775 4.370364 AACACGAACACAAAGCATCTTT 57.630 36.364 0.00 0.00 0.00 2.52
1784 1833 1.632589 AAAATTGACAGTGGCCTCCC 58.367 50.000 3.32 0.00 0.00 4.30
1803 1852 7.108194 ACAGAAAATAGCACATGAGAGATCAA 58.892 34.615 0.00 0.00 0.00 2.57
1825 1874 9.113838 ACTTTGATGCTACTAAATTCCATACAG 57.886 33.333 0.00 0.00 0.00 2.74
1876 1925 8.418597 AAGAACACTACTAGGTATGAAGTTCA 57.581 34.615 8.27 8.27 36.29 3.18
1912 1961 2.165030 ACACTACCACAGTACGCATACC 59.835 50.000 0.00 0.00 34.98 2.73
1938 1987 3.748083 AGCATCAGTGACACAAGTGAAT 58.252 40.909 8.59 0.00 33.33 2.57
1940 1989 2.874086 CAAGCATCAGTGACACAAGTGA 59.126 45.455 8.59 3.36 34.10 3.41
1954 2003 6.765036 TGAAGATAGTGGAGATTTCAAGCATC 59.235 38.462 0.00 0.00 0.00 3.91
1955 2004 6.656902 TGAAGATAGTGGAGATTTCAAGCAT 58.343 36.000 0.00 0.00 0.00 3.79
1957 2006 6.038050 CCTTGAAGATAGTGGAGATTTCAAGC 59.962 42.308 15.59 0.00 44.87 4.01
1977 2026 8.540388 ACAACAAGCTAGAAGTATAATCCTTGA 58.460 33.333 0.00 0.00 34.25 3.02
1978 2027 8.723942 ACAACAAGCTAGAAGTATAATCCTTG 57.276 34.615 0.00 0.00 35.73 3.61
2064 2133 4.832266 AGGTGGCACAAAGAAAACATATCA 59.168 37.500 20.82 0.00 44.16 2.15
2102 2171 8.308931 ACGTATGACTGGAACTACAAATTAGAA 58.691 33.333 0.00 0.00 0.00 2.10
2109 2178 5.654603 ATGACGTATGACTGGAACTACAA 57.345 39.130 0.00 0.00 0.00 2.41
2209 2278 7.815840 TGATCTAAGTTTGAACCATTCACAA 57.184 32.000 0.00 0.00 39.87 3.33
2328 2397 6.775629 TCATCATCATCATCCAACATGACAAT 59.224 34.615 0.00 0.00 31.80 2.71
2618 2687 0.317160 TTCGATCCAGCAACTCACGT 59.683 50.000 0.00 0.00 0.00 4.49
2691 2760 5.419155 CACTAGAGGAACCAGATGAACTGTA 59.581 44.000 0.00 0.00 44.40 2.74
2732 2801 6.057533 TGCATTACTATCTTTCATGTCCCTG 58.942 40.000 0.00 0.00 0.00 4.45
2735 2804 7.658982 TCAGATGCATTACTATCTTTCATGTCC 59.341 37.037 0.00 0.00 31.53 4.02
2773 2842 3.631144 TGTTGCGAATTTGAAGCTGAAG 58.369 40.909 0.00 0.00 0.00 3.02
2975 3044 5.512942 TGACAGATTTCCCCATACTTTGA 57.487 39.130 0.00 0.00 0.00 2.69
3095 3164 1.942657 GCTGAGCTTGAATCGCCATTA 59.057 47.619 0.00 0.00 0.00 1.90
3168 3237 8.044908 TGAAGTGTAAGGGTTAAGTATTGGATC 58.955 37.037 0.00 0.00 0.00 3.36
3189 3258 1.331214 CCATGGGTTGCAACTGAAGT 58.669 50.000 27.64 8.35 0.00 3.01
3243 3312 8.095169 CCTACTGAACCTAAACTGATTGTAGTT 58.905 37.037 0.00 0.00 42.43 2.24
3295 3364 8.050316 ACCAAATGAGTAGGGATCTTGATAAT 57.950 34.615 0.00 0.00 0.00 1.28
3340 3409 2.358737 GAACCGACTGCTGTGGGG 60.359 66.667 24.80 16.57 44.92 4.96
3503 3575 7.650903 GCAAAGAGAAAAATGTCAAGAGAACAT 59.349 33.333 0.00 0.00 0.00 2.71
3539 3612 9.597170 CAAGCACTGCATAGATCATAGTTATAT 57.403 33.333 3.30 0.00 0.00 0.86
3727 3800 6.373005 TCTTATCCTGAGAATGGTCAAACA 57.627 37.500 0.00 0.00 0.00 2.83
3866 3939 3.332485 GGTGGGTTCCATAAGGCCATATA 59.668 47.826 5.01 0.00 35.28 0.86
3867 3940 2.110011 GGTGGGTTCCATAAGGCCATAT 59.890 50.000 5.01 0.00 35.28 1.78
3981 4153 5.048921 GCATCCATGTAAATCTCACATCCAG 60.049 44.000 0.00 0.00 34.39 3.86
3993 4165 4.080413 TGGTCTGAGATGCATCCATGTAAA 60.080 41.667 23.06 2.17 0.00 2.01
4030 4203 7.939039 TGGAATCTGAGAAGTTCAAACATAAGT 59.061 33.333 5.50 0.00 34.81 2.24
4031 4204 8.327941 TGGAATCTGAGAAGTTCAAACATAAG 57.672 34.615 5.50 0.00 34.81 1.73
4033 4206 7.679783 TCTGGAATCTGAGAAGTTCAAACATA 58.320 34.615 5.50 0.00 34.81 2.29
4034 4207 6.537355 TCTGGAATCTGAGAAGTTCAAACAT 58.463 36.000 5.50 0.00 34.81 2.71
4035 4208 5.928976 TCTGGAATCTGAGAAGTTCAAACA 58.071 37.500 5.50 1.86 34.81 2.83
4236 4409 0.332972 GGGGAGGAACATCAAGGCTT 59.667 55.000 0.00 0.00 0.00 4.35
4310 4483 2.620115 CAGCAGTTTGATTGTCACCACT 59.380 45.455 0.00 0.00 0.00 4.00
4313 4486 1.337703 TGCAGCAGTTTGATTGTCACC 59.662 47.619 0.00 0.00 0.00 4.02
4314 4487 2.780065 TGCAGCAGTTTGATTGTCAC 57.220 45.000 0.00 0.00 0.00 3.67
4315 4488 4.761227 TCTATTGCAGCAGTTTGATTGTCA 59.239 37.500 0.00 0.00 0.00 3.58
4405 4578 4.245660 CACTTGCGGAAGAGAATTCTACA 58.754 43.478 24.39 0.00 31.96 2.74
4432 4605 6.912082 TGATCAGATGTGTAAACAAACCATG 58.088 36.000 0.00 0.00 0.00 3.66
4447 4620 5.509716 TTTAGCAGGCAAATGATCAGATG 57.490 39.130 0.09 3.81 0.00 2.90
4461 4634 2.532531 CTGCACACGAATTTAGCAGG 57.467 50.000 0.00 0.00 46.55 4.85
4621 4794 3.730761 CTCAGCGTGGCAAGCACC 61.731 66.667 26.47 0.00 37.01 5.01
4642 4815 1.112916 CAACCGCTTTGGGTCCCTTT 61.113 55.000 10.00 0.00 44.64 3.11
4799 4972 2.057922 AGATGAGGCGTGGGGATAAAT 58.942 47.619 0.00 0.00 0.00 1.40
4800 4973 1.140852 CAGATGAGGCGTGGGGATAAA 59.859 52.381 0.00 0.00 0.00 1.40
4885 5058 0.108756 GTAGAGGTTCCGGCACACTC 60.109 60.000 6.56 10.21 0.00 3.51
4906 5079 2.037251 TGAACTGACAAGAGTAGGTGCC 59.963 50.000 0.00 0.00 0.00 5.01
4923 5096 1.512926 AACAGGAGCGACATGTGAAC 58.487 50.000 1.15 0.00 42.83 3.18
4975 5151 4.096681 TCAGAAGCTTCTCCTCCATGTTA 58.903 43.478 26.18 0.00 34.74 2.41
5040 5216 2.166459 TCATTCTGCCGAAGTACCTCTG 59.834 50.000 0.00 0.00 31.60 3.35
5041 5217 2.428890 CTCATTCTGCCGAAGTACCTCT 59.571 50.000 0.00 0.00 31.60 3.69
5047 5223 4.343526 AGATCATACTCATTCTGCCGAAGT 59.656 41.667 0.00 0.00 31.60 3.01
5083 5259 2.434884 AAGCCGCACAGGTCATCG 60.435 61.111 0.00 0.00 43.70 3.84
5147 5323 2.898705 CTACACAGGATGAGAAGTGGC 58.101 52.381 0.00 0.00 39.69 5.01
5319 5508 4.864334 GCAGGAGGCCATCACCGG 62.864 72.222 5.01 0.00 36.11 5.28
5408 5605 4.283722 ACTTCAGTTCGTCTGGTTATTCCT 59.716 41.667 9.57 0.00 43.76 3.36
5463 5660 1.751924 ACTGGCTGCTACTACTACTGC 59.248 52.381 0.00 0.00 0.00 4.40
5464 5661 4.498345 GCTTACTGGCTGCTACTACTACTG 60.498 50.000 0.00 0.00 0.00 2.74
5541 5751 2.922740 ACCCTGCTTACACGAAAGAA 57.077 45.000 0.00 0.00 0.00 2.52
5542 5752 2.028748 GGTACCCTGCTTACACGAAAGA 60.029 50.000 0.00 0.00 0.00 2.52
5597 5807 6.856426 CACGAGCGACAGATATAATAAACAGA 59.144 38.462 0.00 0.00 0.00 3.41
5598 5808 6.637254 ACACGAGCGACAGATATAATAAACAG 59.363 38.462 0.00 0.00 0.00 3.16
5599 5809 6.416750 CACACGAGCGACAGATATAATAAACA 59.583 38.462 0.00 0.00 0.00 2.83
5600 5810 6.613745 GCACACGAGCGACAGATATAATAAAC 60.614 42.308 0.00 0.00 0.00 2.01
5602 5812 4.915667 GCACACGAGCGACAGATATAATAA 59.084 41.667 0.00 0.00 0.00 1.40
5661 5874 4.776837 AGAACCACATCTCTGAATCAGACT 59.223 41.667 9.18 0.00 35.39 3.24
5662 5875 5.083533 AGAACCACATCTCTGAATCAGAC 57.916 43.478 9.18 0.00 35.39 3.51
5663 5876 4.774200 TGAGAACCACATCTCTGAATCAGA 59.226 41.667 12.87 12.87 44.98 3.27
5664 5877 5.082251 TGAGAACCACATCTCTGAATCAG 57.918 43.478 3.38 3.38 44.98 2.90
5665 5878 5.688814 ATGAGAACCACATCTCTGAATCA 57.311 39.130 5.96 0.00 44.98 2.57
5666 5879 7.768120 AGTTTATGAGAACCACATCTCTGAATC 59.232 37.037 5.96 0.94 44.98 2.52
5667 5880 7.551974 CAGTTTATGAGAACCACATCTCTGAAT 59.448 37.037 5.96 0.00 44.98 2.57
5668 5881 6.875726 CAGTTTATGAGAACCACATCTCTGAA 59.124 38.462 5.96 0.00 44.98 3.02
5669 5882 6.211384 TCAGTTTATGAGAACCACATCTCTGA 59.789 38.462 5.96 0.00 44.98 3.27
5670 5883 6.401394 TCAGTTTATGAGAACCACATCTCTG 58.599 40.000 5.96 0.00 44.98 3.35
5671 5884 6.611613 TCAGTTTATGAGAACCACATCTCT 57.388 37.500 5.96 0.00 44.98 3.10
5694 5907 7.448748 ACGAAAATAAGCTCTAACCAACAAT 57.551 32.000 0.00 0.00 0.00 2.71
5719 5932 2.196595 CTTGGAATACCTGGGACCAGA 58.803 52.381 19.65 0.89 46.30 3.86
5748 5961 6.096001 GCTCTTCCTTCATACAATCAACCATT 59.904 38.462 0.00 0.00 0.00 3.16
5756 5969 4.437239 CAGTCGCTCTTCCTTCATACAAT 58.563 43.478 0.00 0.00 0.00 2.71
5767 5980 0.514691 CCTGTTTGCAGTCGCTCTTC 59.485 55.000 0.00 0.00 41.02 2.87
5770 5983 1.785041 TTGCCTGTTTGCAGTCGCTC 61.785 55.000 0.00 0.00 43.21 5.03
5778 5991 2.584492 ACACTTTCTTGCCTGTTTGC 57.416 45.000 0.00 0.00 0.00 3.68
5798 6011 2.485814 GGCAGAAGAAGCGAAAATCAGT 59.514 45.455 0.00 0.00 0.00 3.41
5801 6014 2.087646 AGGGCAGAAGAAGCGAAAATC 58.912 47.619 0.00 0.00 0.00 2.17
5807 6020 0.036952 TTCTCAGGGCAGAAGAAGCG 60.037 55.000 0.00 0.00 0.00 4.68
5861 8281 4.455533 TGCTGACATGAAACATCAGGTTAC 59.544 41.667 0.00 0.00 39.29 2.50
5866 8295 5.816258 AGACTATGCTGACATGAAACATCAG 59.184 40.000 0.00 2.47 42.33 2.90
5936 8367 7.657336 TGAGATAAATCTTTTGCCTTCGTTTT 58.343 30.769 0.00 0.00 37.25 2.43
6014 8445 5.612725 ATCAATCCCTTTGTGTGTGTTTT 57.387 34.783 0.00 0.00 36.65 2.43
6015 8446 5.128499 TCAATCAATCCCTTTGTGTGTGTTT 59.872 36.000 0.00 0.00 36.65 2.83
6016 8447 4.648762 TCAATCAATCCCTTTGTGTGTGTT 59.351 37.500 0.00 0.00 36.65 3.32
6017 8448 4.037923 GTCAATCAATCCCTTTGTGTGTGT 59.962 41.667 0.00 0.00 36.65 3.72
6018 8449 4.549458 GTCAATCAATCCCTTTGTGTGTG 58.451 43.478 0.00 0.00 36.65 3.82
6020 8451 3.825308 CGTCAATCAATCCCTTTGTGTG 58.175 45.455 0.00 0.00 36.65 3.82
6021 8452 2.228822 GCGTCAATCAATCCCTTTGTGT 59.771 45.455 0.00 0.00 36.65 3.72
6022 8453 2.228582 TGCGTCAATCAATCCCTTTGTG 59.771 45.455 0.00 0.00 36.65 3.33
6024 8455 3.244976 GTTGCGTCAATCAATCCCTTTG 58.755 45.455 0.00 0.00 36.61 2.77
6027 8458 2.198827 TGTTGCGTCAATCAATCCCT 57.801 45.000 0.00 0.00 0.00 4.20
6028 8459 2.223572 GGATGTTGCGTCAATCAATCCC 60.224 50.000 14.12 0.00 30.99 3.85
6029 8460 2.684881 AGGATGTTGCGTCAATCAATCC 59.315 45.455 15.71 15.71 34.17 3.01
6030 8461 5.065218 AGTTAGGATGTTGCGTCAATCAATC 59.935 40.000 0.00 1.76 0.00 2.67
6032 8463 4.154015 CAGTTAGGATGTTGCGTCAATCAA 59.846 41.667 0.00 0.00 0.00 2.57
6033 8464 3.684305 CAGTTAGGATGTTGCGTCAATCA 59.316 43.478 0.00 0.00 0.00 2.57
6034 8465 3.063997 CCAGTTAGGATGTTGCGTCAATC 59.936 47.826 0.00 0.00 41.22 2.67
6035 8466 3.009723 CCAGTTAGGATGTTGCGTCAAT 58.990 45.455 0.00 0.00 41.22 2.57
6036 8467 2.422597 CCAGTTAGGATGTTGCGTCAA 58.577 47.619 0.00 0.00 41.22 3.18
6038 8469 0.727398 GCCAGTTAGGATGTTGCGTC 59.273 55.000 0.00 0.00 41.22 5.19
6041 8472 3.658757 TTTTGCCAGTTAGGATGTTGC 57.341 42.857 0.00 0.00 41.22 4.17
6043 8474 4.677182 AGGATTTTGCCAGTTAGGATGTT 58.323 39.130 0.00 0.00 41.22 2.71
6044 8475 4.322057 AGGATTTTGCCAGTTAGGATGT 57.678 40.909 0.00 0.00 41.22 3.06
6046 8477 5.134339 TGGATAGGATTTTGCCAGTTAGGAT 59.866 40.000 0.00 0.00 41.22 3.24
6047 8478 4.476846 TGGATAGGATTTTGCCAGTTAGGA 59.523 41.667 0.00 0.00 41.22 2.94
6048 8479 4.792068 TGGATAGGATTTTGCCAGTTAGG 58.208 43.478 0.00 0.00 41.84 2.69
6049 8480 5.684704 TCTGGATAGGATTTTGCCAGTTAG 58.315 41.667 0.00 0.00 44.91 2.34
6050 8481 5.708736 TCTGGATAGGATTTTGCCAGTTA 57.291 39.130 0.00 0.00 44.91 2.24
6051 8482 4.591321 TCTGGATAGGATTTTGCCAGTT 57.409 40.909 0.00 0.00 44.91 3.16
6052 8483 4.591321 TTCTGGATAGGATTTTGCCAGT 57.409 40.909 0.00 0.00 44.91 4.00
6053 8484 4.952335 AGTTTCTGGATAGGATTTTGCCAG 59.048 41.667 0.00 0.00 45.77 4.85
6054 8485 4.934356 AGTTTCTGGATAGGATTTTGCCA 58.066 39.130 0.00 0.00 0.00 4.92
6067 8498 1.777878 TGTAGGGCCAAAGTTTCTGGA 59.222 47.619 6.18 0.00 35.85 3.86
6080 8511 1.472188 ACTCTCGGTACTTGTAGGGC 58.528 55.000 0.00 0.00 0.00 5.19
6085 8516 1.622312 GGGGAAACTCTCGGTACTTGT 59.378 52.381 0.00 0.00 0.00 3.16
6128 8559 2.908073 GCCTCTTTGCCCACACACG 61.908 63.158 0.00 0.00 0.00 4.49
6129 8560 2.564721 GGCCTCTTTGCCCACACAC 61.565 63.158 0.00 0.00 46.11 3.82
6130 8561 2.203480 GGCCTCTTTGCCCACACA 60.203 61.111 0.00 0.00 46.11 3.72
6141 8572 2.024414 GTGTTTCACAACAAGGCCTCT 58.976 47.619 5.23 0.00 44.72 3.69
6150 8581 8.316640 AGAGAAATATGAGAGTGTTTCACAAC 57.683 34.615 2.80 0.00 36.74 3.32
6154 8585 8.127150 TCTGAGAGAAATATGAGAGTGTTTCA 57.873 34.615 0.00 0.00 33.30 2.69
6166 8597 4.225942 TGTTGGCCACTCTGAGAGAAATAT 59.774 41.667 17.71 0.00 33.32 1.28
6167 8598 3.582647 TGTTGGCCACTCTGAGAGAAATA 59.417 43.478 17.71 0.00 33.32 1.40
6171 8602 0.972134 CTGTTGGCCACTCTGAGAGA 59.028 55.000 17.71 0.00 33.32 3.10
6183 8619 7.559590 AATATGAGATGTTTAGTCTGTTGGC 57.440 36.000 0.00 0.00 0.00 4.52
6194 8630 7.986320 CCACTCTGAGAGAAATATGAGATGTTT 59.014 37.037 17.71 0.00 33.32 2.83
6195 8631 7.499292 CCACTCTGAGAGAAATATGAGATGTT 58.501 38.462 17.71 0.00 33.32 2.71
6196 8632 6.462768 GCCACTCTGAGAGAAATATGAGATGT 60.463 42.308 17.71 0.00 33.32 3.06
6197 8633 5.927689 GCCACTCTGAGAGAAATATGAGATG 59.072 44.000 17.71 0.00 33.32 2.90
6198 8634 5.011943 GGCCACTCTGAGAGAAATATGAGAT 59.988 44.000 17.71 0.00 33.32 2.75
6199 8635 4.343526 GGCCACTCTGAGAGAAATATGAGA 59.656 45.833 17.71 0.00 33.32 3.27
6200 8636 4.100653 TGGCCACTCTGAGAGAAATATGAG 59.899 45.833 17.71 0.00 33.32 2.90
6201 8637 4.033009 TGGCCACTCTGAGAGAAATATGA 58.967 43.478 17.71 0.00 33.32 2.15
6202 8638 4.412796 TGGCCACTCTGAGAGAAATATG 57.587 45.455 17.71 3.16 33.32 1.78
6203 8639 4.225942 TGTTGGCCACTCTGAGAGAAATAT 59.774 41.667 17.71 0.00 33.32 1.28
6204 8640 3.582647 TGTTGGCCACTCTGAGAGAAATA 59.417 43.478 17.71 0.00 33.32 1.40
6205 8641 2.373169 TGTTGGCCACTCTGAGAGAAAT 59.627 45.455 17.71 0.00 33.32 2.17
6206 8642 1.768275 TGTTGGCCACTCTGAGAGAAA 59.232 47.619 17.71 0.00 33.32 2.52
6207 8643 1.345741 CTGTTGGCCACTCTGAGAGAA 59.654 52.381 17.71 0.00 33.32 2.87
6208 8644 0.972134 CTGTTGGCCACTCTGAGAGA 59.028 55.000 17.71 0.00 33.32 3.10
6209 8645 0.972134 TCTGTTGGCCACTCTGAGAG 59.028 55.000 3.88 8.15 35.52 3.20
6210 8646 0.681733 GTCTGTTGGCCACTCTGAGA 59.318 55.000 3.88 0.00 0.00 3.27
6211 8647 0.683973 AGTCTGTTGGCCACTCTGAG 59.316 55.000 3.88 2.45 0.00 3.35
6212 8648 2.009681 TAGTCTGTTGGCCACTCTGA 57.990 50.000 3.88 8.80 0.00 3.27
6213 8649 2.808543 GTTTAGTCTGTTGGCCACTCTG 59.191 50.000 3.88 6.29 0.00 3.35
6214 8650 2.438021 TGTTTAGTCTGTTGGCCACTCT 59.562 45.455 3.88 2.05 0.00 3.24
6215 8651 2.846193 TGTTTAGTCTGTTGGCCACTC 58.154 47.619 3.88 1.78 0.00 3.51
6216 8652 3.073062 AGATGTTTAGTCTGTTGGCCACT 59.927 43.478 3.88 0.21 0.00 4.00
6217 8653 3.412386 AGATGTTTAGTCTGTTGGCCAC 58.588 45.455 3.88 0.75 0.00 5.01
6218 8654 3.788227 AGATGTTTAGTCTGTTGGCCA 57.212 42.857 0.00 0.00 0.00 5.36
6219 8655 4.072131 TGAAGATGTTTAGTCTGTTGGCC 58.928 43.478 0.00 0.00 0.00 5.36
6220 8656 5.689383 TTGAAGATGTTTAGTCTGTTGGC 57.311 39.130 0.00 0.00 0.00 4.52
6221 8657 7.496529 TCTTTGAAGATGTTTAGTCTGTTGG 57.503 36.000 0.00 0.00 0.00 3.77
6222 8658 9.956720 AATTCTTTGAAGATGTTTAGTCTGTTG 57.043 29.630 0.00 0.00 34.49 3.33
6230 8666 9.920946 AGGCCTATAATTCTTTGAAGATGTTTA 57.079 29.630 1.29 0.00 34.49 2.01
6231 8667 8.829373 AGGCCTATAATTCTTTGAAGATGTTT 57.171 30.769 1.29 0.00 34.49 2.83
6269 8705 1.537202 ACGAACGTGGTAGTCTGGTAC 59.463 52.381 0.00 0.00 0.00 3.34
6277 8713 0.032403 TGGTGGAACGAACGTGGTAG 59.968 55.000 0.00 0.00 38.12 3.18
6278 8714 0.680618 ATGGTGGAACGAACGTGGTA 59.319 50.000 0.00 0.00 38.12 3.25
6305 8741 1.206610 CCTGGTCCACACTCTCATCAG 59.793 57.143 0.00 0.00 0.00 2.90
6306 8742 1.269958 CCTGGTCCACACTCTCATCA 58.730 55.000 0.00 0.00 0.00 3.07
6307 8743 0.107945 GCCTGGTCCACACTCTCATC 60.108 60.000 0.00 0.00 0.00 2.92
6360 8796 6.041523 ACTCTGCTAGGATTTAGGAAGTGATC 59.958 42.308 0.00 0.00 0.00 2.92
6364 8800 5.303333 GCTACTCTGCTAGGATTTAGGAAGT 59.697 44.000 0.00 0.00 0.00 3.01
6366 8802 4.278669 CGCTACTCTGCTAGGATTTAGGAA 59.721 45.833 0.00 0.00 0.00 3.36
6370 8806 2.296471 GCCGCTACTCTGCTAGGATTTA 59.704 50.000 0.00 0.00 0.00 1.40
6384 8820 5.683859 CATCTAATCTTCAAATGCCGCTAC 58.316 41.667 0.00 0.00 0.00 3.58
6408 8844 1.615107 GAGAACCAAGAACGACGGCG 61.615 60.000 10.39 10.39 44.79 6.46
6413 8849 3.064820 GTGCAAAAGAGAACCAAGAACGA 59.935 43.478 0.00 0.00 0.00 3.85
6449 8885 3.674138 GCATAGCCATTGACCAAACTGTG 60.674 47.826 0.00 0.00 0.00 3.66
6468 8904 0.035152 TCTGCAAGATTGGACGGCAT 60.035 50.000 0.00 0.00 38.67 4.40
6472 8908 2.223203 GCTCATTCTGCAAGATTGGACG 60.223 50.000 0.00 0.00 46.36 4.79
6496 8938 4.454161 TCGCCGAAAATCAGATTTTTCTCA 59.546 37.500 19.98 4.05 42.15 3.27
6519 8961 5.134339 TGGATGGTCTAGAAAATATGGGCTT 59.866 40.000 0.00 0.00 0.00 4.35
6543 8985 1.344953 TAGCCGGACATGCCAAGGAT 61.345 55.000 5.05 0.00 35.94 3.24
6544 8986 1.344953 ATAGCCGGACATGCCAAGGA 61.345 55.000 5.05 0.00 35.94 3.36
6545 8987 0.886490 GATAGCCGGACATGCCAAGG 60.886 60.000 5.05 0.00 35.94 3.61
6546 8988 0.179048 TGATAGCCGGACATGCCAAG 60.179 55.000 5.05 0.00 35.94 3.61
6559 9001 2.926165 GCAATTCGCAGGATTGATAGC 58.074 47.619 12.04 0.00 41.79 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.