Multiple sequence alignment - TraesCS2A01G326300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G326300 chr2A 100.000 5568 0 0 1 5568 557056270 557061837 0.000000e+00 10283.0
1 TraesCS2A01G326300 chr2A 92.178 1304 68 19 2668 3967 557319365 557320638 0.000000e+00 1812.0
2 TraesCS2A01G326300 chr2A 90.596 755 70 1 4815 5568 44794566 44793812 0.000000e+00 1000.0
3 TraesCS2A01G326300 chr2A 84.302 809 106 10 2740 3536 557400757 557401556 0.000000e+00 771.0
4 TraesCS2A01G326300 chr2A 82.981 852 113 19 2752 3582 556107940 556107100 0.000000e+00 741.0
5 TraesCS2A01G326300 chr2A 82.209 860 122 18 2740 3579 558090963 558091811 0.000000e+00 712.0
6 TraesCS2A01G326300 chr2A 93.868 424 18 4 2249 2670 557318159 557318576 2.830000e-177 632.0
7 TraesCS2A01G326300 chr2A 83.057 543 44 13 4148 4644 557320715 557321255 3.060000e-122 449.0
8 TraesCS2A01G326300 chr2A 86.571 350 21 6 1775 2098 557317787 557318136 4.100000e-96 363.0
9 TraesCS2A01G326300 chr2A 74.558 904 127 65 3680 4505 557401713 557402591 3.260000e-77 300.0
10 TraesCS2A01G326300 chr2A 85.424 295 19 13 1500 1779 557317288 557317573 9.130000e-73 285.0
11 TraesCS2A01G326300 chr2A 84.436 257 27 8 1917 2164 556109123 556108871 2.000000e-59 241.0
12 TraesCS2A01G326300 chr2A 86.058 208 23 2 1179 1386 557316677 557316878 9.390000e-53 219.0
13 TraesCS2A01G326300 chr2A 93.043 115 8 0 4646 4760 767560026 767559912 9.590000e-38 169.0
14 TraesCS2A01G326300 chr2A 77.941 204 23 12 115 315 557313186 557313370 2.120000e-19 108.0
15 TraesCS2A01G326300 chr2B 95.647 1654 52 7 1691 3330 507793768 507792121 0.000000e+00 2638.0
16 TraesCS2A01G326300 chr2B 93.252 904 59 2 2671 3574 507756123 507755222 0.000000e+00 1330.0
17 TraesCS2A01G326300 chr2B 84.434 893 67 28 3678 4525 507755122 507754257 0.000000e+00 813.0
18 TraesCS2A01G326300 chr2B 88.856 682 47 17 1 678 507795427 507794771 0.000000e+00 811.0
19 TraesCS2A01G326300 chr2B 84.425 809 105 9 2740 3536 507410545 507409746 0.000000e+00 776.0
20 TraesCS2A01G326300 chr2B 83.198 863 114 20 2740 3582 507193168 507192317 0.000000e+00 761.0
21 TraesCS2A01G326300 chr2B 83.949 866 56 27 921 1748 507794573 507793753 0.000000e+00 752.0
22 TraesCS2A01G326300 chr2B 83.508 861 67 37 956 1779 507758691 507757869 0.000000e+00 734.0
23 TraesCS2A01G326300 chr2B 82.209 860 120 19 2740 3577 506509246 506508398 0.000000e+00 710.0
24 TraesCS2A01G326300 chr2B 83.759 665 88 8 2740 3392 507505436 507504780 3.690000e-171 612.0
25 TraesCS2A01G326300 chr2B 90.566 424 33 3 2249 2670 507757236 507756818 6.300000e-154 555.0
26 TraesCS2A01G326300 chr2B 84.672 411 45 9 1774 2167 507757644 507757235 1.450000e-105 394.0
27 TraesCS2A01G326300 chr2B 86.923 130 12 4 3751 3876 507504490 507504362 2.090000e-29 141.0
28 TraesCS2A01G326300 chr2B 84.444 135 13 5 3751 3878 507409535 507409402 5.860000e-25 126.0
29 TraesCS2A01G326300 chr2B 79.769 173 15 13 118 280 507759536 507759374 2.120000e-19 108.0
30 TraesCS2A01G326300 chr2B 98.182 55 1 0 4758 4812 507791929 507791875 4.590000e-16 97.1
31 TraesCS2A01G326300 chr2D 94.576 1014 43 6 2671 3679 429925366 429924360 0.000000e+00 1557.0
32 TraesCS2A01G326300 chr2D 85.504 814 99 8 2740 3536 429835732 429834921 0.000000e+00 832.0
33 TraesCS2A01G326300 chr2D 83.787 845 120 12 2740 3579 429740442 429739610 0.000000e+00 785.0
34 TraesCS2A01G326300 chr2D 82.326 860 121 14 2740 3579 430385187 430386035 0.000000e+00 717.0
35 TraesCS2A01G326300 chr2D 82.479 839 117 17 2764 3582 429691604 429690776 0.000000e+00 708.0
36 TraesCS2A01G326300 chr2D 94.076 422 20 2 2249 2670 429927027 429926611 2.190000e-178 636.0
37 TraesCS2A01G326300 chr2D 84.049 652 53 20 3917 4525 429924103 429923460 1.040000e-161 580.0
38 TraesCS2A01G326300 chr2D 89.801 402 29 5 1778 2167 429927427 429927026 6.440000e-139 505.0
39 TraesCS2A01G326300 chr2D 81.375 698 58 35 1085 1756 429928326 429927675 2.320000e-138 503.0
40 TraesCS2A01G326300 chr2D 92.262 168 9 2 3679 3843 429924318 429924152 9.330000e-58 235.0
41 TraesCS2A01G326300 chr2D 76.620 355 49 27 118 463 429929345 429929016 1.240000e-36 165.0
42 TraesCS2A01G326300 chr2D 77.606 259 37 10 4257 4505 429834353 429834106 2.710000e-28 137.0
43 TraesCS2A01G326300 chr2D 77.551 245 33 11 4257 4491 429738804 429738572 1.630000e-25 128.0
44 TraesCS2A01G326300 chr2D 89.412 85 9 0 2166 2250 610470836 610470752 2.120000e-19 108.0
45 TraesCS2A01G326300 chr2D 89.412 85 9 0 2166 2250 610493499 610493415 2.120000e-19 108.0
46 TraesCS2A01G326300 chr1D 93.510 755 45 3 4815 5568 383691139 383690388 0.000000e+00 1120.0
47 TraesCS2A01G326300 chr4A 91.788 755 53 4 4815 5568 276918656 276919402 0.000000e+00 1042.0
48 TraesCS2A01G326300 chr4A 87.143 140 14 4 4637 4776 281354428 281354293 7.470000e-34 156.0
49 TraesCS2A01G326300 chr4A 97.674 43 1 0 2607 2649 10570911 10570953 2.150000e-09 75.0
50 TraesCS2A01G326300 chr3D 91.436 759 63 2 4811 5568 363795300 363796057 0.000000e+00 1040.0
51 TraesCS2A01G326300 chr5A 90.885 757 66 2 4815 5568 564979623 564978867 0.000000e+00 1013.0
52 TraesCS2A01G326300 chr5A 90.212 756 72 2 4815 5568 702040864 702041619 0.000000e+00 985.0
53 TraesCS2A01G326300 chr1A 90.080 746 70 3 4824 5568 41923174 41922432 0.000000e+00 965.0
54 TraesCS2A01G326300 chr1A 89.683 756 76 2 4814 5568 579755419 579756173 0.000000e+00 963.0
55 TraesCS2A01G326300 chr1A 89.564 757 75 4 4815 5568 558083889 558083134 0.000000e+00 957.0
56 TraesCS2A01G326300 chr1A 93.103 116 7 1 4646 4761 321291330 321291444 9.590000e-38 169.0
57 TraesCS2A01G326300 chr3A 94.690 113 6 0 4651 4763 46169098 46169210 5.730000e-40 176.0
58 TraesCS2A01G326300 chr7D 95.413 109 5 0 4654 4762 598012951 598013059 2.060000e-39 174.0
59 TraesCS2A01G326300 chr7D 93.162 117 7 1 4654 4770 21093607 21093722 2.670000e-38 171.0
60 TraesCS2A01G326300 chr5B 90.698 129 10 2 4650 4778 278886990 278886864 2.670000e-38 171.0
61 TraesCS2A01G326300 chr6A 92.373 118 9 0 4645 4762 20748392 20748509 9.590000e-38 169.0
62 TraesCS2A01G326300 chr4B 93.043 115 7 1 4654 4768 599234066 599233953 3.450000e-37 167.0
63 TraesCS2A01G326300 chr4B 85.714 70 10 0 2580 2649 572914758 572914689 2.150000e-09 75.0
64 TraesCS2A01G326300 chr6B 85.333 75 10 1 2172 2246 698084117 698084044 5.980000e-10 76.8
65 TraesCS2A01G326300 chr6D 82.927 82 11 3 2166 2246 458853935 458853856 2.780000e-08 71.3
66 TraesCS2A01G326300 chr4D 95.349 43 2 0 2607 2649 458750230 458750188 1.000000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G326300 chr2A 557056270 557061837 5567 False 10283.000000 10283 100.000000 1 5568 1 chr2A.!!$F1 5567
1 TraesCS2A01G326300 chr2A 44793812 44794566 754 True 1000.000000 1000 90.596000 4815 5568 1 chr2A.!!$R1 753
2 TraesCS2A01G326300 chr2A 558090963 558091811 848 False 712.000000 712 82.209000 2740 3579 1 chr2A.!!$F2 839
3 TraesCS2A01G326300 chr2A 557313186 557321255 8069 False 552.571429 1812 86.442429 115 4644 7 chr2A.!!$F3 4529
4 TraesCS2A01G326300 chr2A 557400757 557402591 1834 False 535.500000 771 79.430000 2740 4505 2 chr2A.!!$F4 1765
5 TraesCS2A01G326300 chr2A 556107100 556109123 2023 True 491.000000 741 83.708500 1917 3582 2 chr2A.!!$R3 1665
6 TraesCS2A01G326300 chr2B 507791875 507795427 3552 True 1074.525000 2638 91.658500 1 4812 4 chr2B.!!$R6 4811
7 TraesCS2A01G326300 chr2B 507192317 507193168 851 True 761.000000 761 83.198000 2740 3582 1 chr2B.!!$R2 842
8 TraesCS2A01G326300 chr2B 506508398 506509246 848 True 710.000000 710 82.209000 2740 3577 1 chr2B.!!$R1 837
9 TraesCS2A01G326300 chr2B 507754257 507759536 5279 True 655.666667 1330 86.033500 118 4525 6 chr2B.!!$R5 4407
10 TraesCS2A01G326300 chr2B 507409402 507410545 1143 True 451.000000 776 84.434500 2740 3878 2 chr2B.!!$R3 1138
11 TraesCS2A01G326300 chr2B 507504362 507505436 1074 True 376.500000 612 85.341000 2740 3876 2 chr2B.!!$R4 1136
12 TraesCS2A01G326300 chr2D 430385187 430386035 848 False 717.000000 717 82.326000 2740 3579 1 chr2D.!!$F1 839
13 TraesCS2A01G326300 chr2D 429690776 429691604 828 True 708.000000 708 82.479000 2764 3582 1 chr2D.!!$R1 818
14 TraesCS2A01G326300 chr2D 429923460 429929345 5885 True 597.285714 1557 87.537000 118 4525 7 chr2D.!!$R6 4407
15 TraesCS2A01G326300 chr2D 429834106 429835732 1626 True 484.500000 832 81.555000 2740 4505 2 chr2D.!!$R5 1765
16 TraesCS2A01G326300 chr2D 429738572 429740442 1870 True 456.500000 785 80.669000 2740 4491 2 chr2D.!!$R4 1751
17 TraesCS2A01G326300 chr1D 383690388 383691139 751 True 1120.000000 1120 93.510000 4815 5568 1 chr1D.!!$R1 753
18 TraesCS2A01G326300 chr4A 276918656 276919402 746 False 1042.000000 1042 91.788000 4815 5568 1 chr4A.!!$F2 753
19 TraesCS2A01G326300 chr3D 363795300 363796057 757 False 1040.000000 1040 91.436000 4811 5568 1 chr3D.!!$F1 757
20 TraesCS2A01G326300 chr5A 564978867 564979623 756 True 1013.000000 1013 90.885000 4815 5568 1 chr5A.!!$R1 753
21 TraesCS2A01G326300 chr5A 702040864 702041619 755 False 985.000000 985 90.212000 4815 5568 1 chr5A.!!$F1 753
22 TraesCS2A01G326300 chr1A 41922432 41923174 742 True 965.000000 965 90.080000 4824 5568 1 chr1A.!!$R1 744
23 TraesCS2A01G326300 chr1A 579755419 579756173 754 False 963.000000 963 89.683000 4814 5568 1 chr1A.!!$F2 754
24 TraesCS2A01G326300 chr1A 558083134 558083889 755 True 957.000000 957 89.564000 4815 5568 1 chr1A.!!$R2 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
953 1215 0.037512 CACCACTCTGCTCTCAGGTG 60.038 60.000 0.00 0.00 40.69 4.00 F
1964 5343 0.031178 GATCAATCAACGGGCATGCC 59.969 55.000 29.47 29.47 0.00 4.40 F
2602 6514 2.051345 GTGCCCAAACTGCGAACG 60.051 61.111 0.00 0.00 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2451 6363 1.959042 CATCGTTTGATGCCTAGGCT 58.041 50.0 33.07 19.27 45.06 4.58 R
3577 8779 0.749454 GCTTCGCCTGGTCCATCAAT 60.749 55.0 0.00 0.00 0.00 2.57 R
4569 10149 0.462759 CCTCGATGAGTTTGGCCTCC 60.463 60.0 3.32 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.675348 CAAGATTCTTCCTGAGTTCGGC 59.325 50.000 0.00 0.00 0.00 5.54
38 39 0.326595 TCGGCAAAGCAGTAATCCCA 59.673 50.000 0.00 0.00 0.00 4.37
43 44 4.037923 CGGCAAAGCAGTAATCCCAAATAT 59.962 41.667 0.00 0.00 0.00 1.28
45 46 6.238897 CGGCAAAGCAGTAATCCCAAATATAA 60.239 38.462 0.00 0.00 0.00 0.98
90 91 3.370103 CCTCGTATCTAAAAGGGGCAACA 60.370 47.826 0.00 0.00 39.74 3.33
112 113 2.673775 TGCCCTGAAAACCAGAATCA 57.326 45.000 0.00 0.00 45.78 2.57
159 160 2.671619 CGTTGGATGGGCAACGGT 60.672 61.111 1.04 0.00 46.97 4.83
160 161 2.265182 CGTTGGATGGGCAACGGTT 61.265 57.895 1.04 0.00 46.97 4.44
161 162 1.288752 GTTGGATGGGCAACGGTTG 59.711 57.895 16.35 16.35 37.60 3.77
162 163 1.905843 TTGGATGGGCAACGGTTGG 60.906 57.895 21.37 4.70 37.60 3.77
200 206 0.890683 CAGGCCAACCCATTCACTTC 59.109 55.000 5.01 0.00 36.11 3.01
248 262 0.517316 GAAATCGCCACGCTCTTGTT 59.483 50.000 0.00 0.00 0.00 2.83
250 264 0.238289 AATCGCCACGCTCTTGTTTG 59.762 50.000 0.00 0.00 0.00 2.93
262 276 0.954452 CTTGTTTGGTGCCCTCTGTC 59.046 55.000 0.00 0.00 0.00 3.51
263 278 0.550914 TTGTTTGGTGCCCTCTGTCT 59.449 50.000 0.00 0.00 0.00 3.41
278 293 2.163509 CTGTCTCCTTCGTCCTCTTGA 58.836 52.381 0.00 0.00 0.00 3.02
280 295 2.164338 GTCTCCTTCGTCCTCTTGACT 58.836 52.381 0.00 0.00 42.13 3.41
281 296 2.559231 GTCTCCTTCGTCCTCTTGACTT 59.441 50.000 0.00 0.00 42.13 3.01
325 340 1.002069 AATCCATGGAGGCTGAACCA 58.998 50.000 21.33 0.00 43.14 3.67
326 341 1.229131 ATCCATGGAGGCTGAACCAT 58.771 50.000 21.33 0.00 46.22 3.55
351 371 5.349061 TGATGCTGACACTCAACTCATAT 57.651 39.130 0.00 0.00 0.00 1.78
352 372 5.114081 TGATGCTGACACTCAACTCATATG 58.886 41.667 0.00 0.00 0.00 1.78
386 406 2.180276 AGAAGACATGTTCGCCTACCT 58.820 47.619 0.00 0.00 0.00 3.08
395 415 0.458669 TTCGCCTACCTGATCGAACC 59.541 55.000 0.00 0.00 36.24 3.62
423 445 8.812147 TGTAGTAGTACAACTGAACAAGATTG 57.188 34.615 7.99 0.00 36.15 2.67
458 481 5.048013 CAGTTTTATTTGGACCAAGGGAGTC 60.048 44.000 7.07 0.00 0.00 3.36
463 486 1.246056 TGGACCAAGGGAGTCGTACG 61.246 60.000 9.53 9.53 34.97 3.67
487 532 3.017442 GGACACTAATGGAGGGCTTTTC 58.983 50.000 0.00 0.00 27.73 2.29
523 599 3.378112 TGCAAAGTCTTGTTTCACTGGAG 59.622 43.478 0.00 0.00 34.79 3.86
638 766 7.716768 AAAAGTTTCCTCTCGTAGAAAAGAG 57.283 36.000 0.00 0.00 39.00 2.85
642 770 6.941436 AGTTTCCTCTCGTAGAAAAGAGTCTA 59.059 38.462 0.00 0.00 37.84 2.59
689 830 2.997315 CGAGCCCAGTCCTCCACA 60.997 66.667 0.00 0.00 0.00 4.17
691 832 2.122413 AGCCCAGTCCTCCACACA 60.122 61.111 0.00 0.00 0.00 3.72
692 833 2.032681 GCCCAGTCCTCCACACAC 59.967 66.667 0.00 0.00 0.00 3.82
693 834 2.818169 GCCCAGTCCTCCACACACA 61.818 63.158 0.00 0.00 0.00 3.72
695 836 1.695114 CCCAGTCCTCCACACACACA 61.695 60.000 0.00 0.00 0.00 3.72
696 837 0.250038 CCAGTCCTCCACACACACAG 60.250 60.000 0.00 0.00 0.00 3.66
700 841 1.000283 GTCCTCCACACACACAGAGAG 60.000 57.143 0.00 0.00 0.00 3.20
701 842 1.133482 TCCTCCACACACACAGAGAGA 60.133 52.381 0.00 0.00 0.00 3.10
702 843 1.271934 CCTCCACACACACAGAGAGAG 59.728 57.143 0.00 0.00 0.00 3.20
703 844 2.234143 CTCCACACACACAGAGAGAGA 58.766 52.381 0.00 0.00 0.00 3.10
705 846 2.158608 TCCACACACACAGAGAGAGAGA 60.159 50.000 0.00 0.00 0.00 3.10
712 894 0.926293 ACAGAGAGAGAGAGAGGGGG 59.074 60.000 0.00 0.00 0.00 5.40
716 898 0.047176 AGAGAGAGAGAGGGGGAGGA 59.953 60.000 0.00 0.00 0.00 3.71
719 901 2.123033 GAGAGAGGGGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
723 905 2.285743 GAGGGGGAGGAGGCTTGT 60.286 66.667 0.00 0.00 0.00 3.16
744 926 2.668212 CTGCGCTGGGGAAAACGA 60.668 61.111 9.73 0.00 0.00 3.85
751 933 1.202348 GCTGGGGAAAACGATTTGGAG 59.798 52.381 0.00 0.00 0.00 3.86
754 936 2.373836 TGGGGAAAACGATTTGGAGAGA 59.626 45.455 0.00 0.00 0.00 3.10
755 937 3.010420 GGGGAAAACGATTTGGAGAGAG 58.990 50.000 0.00 0.00 0.00 3.20
756 938 3.307480 GGGGAAAACGATTTGGAGAGAGA 60.307 47.826 0.00 0.00 0.00 3.10
759 941 4.867608 GGAAAACGATTTGGAGAGAGAGAG 59.132 45.833 0.00 0.00 0.00 3.20
760 942 5.336849 GGAAAACGATTTGGAGAGAGAGAGA 60.337 44.000 0.00 0.00 0.00 3.10
761 943 4.981806 AACGATTTGGAGAGAGAGAGAG 57.018 45.455 0.00 0.00 0.00 3.20
762 944 4.229304 ACGATTTGGAGAGAGAGAGAGA 57.771 45.455 0.00 0.00 0.00 3.10
763 945 4.199310 ACGATTTGGAGAGAGAGAGAGAG 58.801 47.826 0.00 0.00 0.00 3.20
764 946 4.080582 ACGATTTGGAGAGAGAGAGAGAGA 60.081 45.833 0.00 0.00 0.00 3.10
765 947 4.512944 CGATTTGGAGAGAGAGAGAGAGAG 59.487 50.000 0.00 0.00 0.00 3.20
766 948 5.684704 GATTTGGAGAGAGAGAGAGAGAGA 58.315 45.833 0.00 0.00 0.00 3.10
767 949 4.760530 TTGGAGAGAGAGAGAGAGAGAG 57.239 50.000 0.00 0.00 0.00 3.20
768 950 3.994317 TGGAGAGAGAGAGAGAGAGAGA 58.006 50.000 0.00 0.00 0.00 3.10
769 951 3.963374 TGGAGAGAGAGAGAGAGAGAGAG 59.037 52.174 0.00 0.00 0.00 3.20
770 952 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
771 953 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
772 954 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
773 955 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
774 956 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
775 957 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
776 958 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
777 959 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
778 960 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
779 961 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
780 962 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
781 963 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
782 964 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
783 965 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
784 966 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
785 967 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
786 968 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
787 969 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
788 970 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
789 971 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
790 972 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
791 973 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
792 974 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
793 975 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
794 976 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
795 977 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
796 978 2.370189 GAGAGAGAGAGAGAGAGAGGGG 59.630 59.091 0.00 0.00 0.00 4.79
797 979 2.022035 AGAGAGAGAGAGAGAGAGGGGA 60.022 54.545 0.00 0.00 0.00 4.81
798 980 2.370189 GAGAGAGAGAGAGAGAGGGGAG 59.630 59.091 0.00 0.00 0.00 4.30
799 981 2.022035 AGAGAGAGAGAGAGAGGGGAGA 60.022 54.545 0.00 0.00 0.00 3.71
800 982 2.370189 GAGAGAGAGAGAGAGGGGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
801 983 1.421646 GAGAGAGAGAGAGGGGAGAGG 59.578 61.905 0.00 0.00 0.00 3.69
802 984 0.478507 GAGAGAGAGAGGGGAGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
803 985 0.047176 AGAGAGAGAGGGGAGAGGGA 59.953 60.000 0.00 0.00 0.00 4.20
804 986 0.478507 GAGAGAGAGGGGAGAGGGAG 59.521 65.000 0.00 0.00 0.00 4.30
805 987 0.998945 AGAGAGAGGGGAGAGGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
806 988 2.018086 AGAGAGGGGAGAGGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
807 989 2.015726 GAGAGGGGAGAGGGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
808 990 2.018086 AGAGGGGAGAGGGAGGGAG 61.018 68.421 0.00 0.00 0.00 4.30
809 991 3.039526 AGGGGAGAGGGAGGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
810 992 3.036959 GGGGAGAGGGAGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
811 993 2.612251 GGGAGAGGGAGGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
812 994 2.612251 GGAGAGGGAGGGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
813 995 2.123033 GAGAGGGAGGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
814 996 2.623431 AGAGGGAGGGAGGAGGCT 60.623 66.667 0.00 0.00 0.00 4.58
815 997 2.250635 GAGAGGGAGGGAGGAGGCTT 62.251 65.000 0.00 0.00 0.00 4.35
816 998 2.041928 AGGGAGGGAGGAGGCTTG 59.958 66.667 0.00 0.00 0.00 4.01
817 999 2.285743 GGGAGGGAGGAGGCTTGT 60.286 66.667 0.00 0.00 0.00 3.16
818 1000 1.925972 GGGAGGGAGGAGGCTTGTT 60.926 63.158 0.00 0.00 0.00 2.83
819 1001 1.501654 GGGAGGGAGGAGGCTTGTTT 61.502 60.000 0.00 0.00 0.00 2.83
820 1002 0.322906 GGAGGGAGGAGGCTTGTTTG 60.323 60.000 0.00 0.00 0.00 2.93
821 1003 0.962855 GAGGGAGGAGGCTTGTTTGC 60.963 60.000 0.00 0.00 0.00 3.68
822 1004 1.075659 GGGAGGAGGCTTGTTTGCT 59.924 57.895 0.00 0.00 0.00 3.91
823 1005 1.246737 GGGAGGAGGCTTGTTTGCTG 61.247 60.000 0.00 0.00 0.00 4.41
824 1006 1.583477 GAGGAGGCTTGTTTGCTGC 59.417 57.895 0.00 0.00 0.00 5.25
825 1007 2.192608 GAGGAGGCTTGTTTGCTGCG 62.193 60.000 0.00 0.00 0.00 5.18
826 1008 2.429739 GAGGCTTGTTTGCTGCGC 60.430 61.111 0.00 0.00 0.00 6.09
827 1009 3.198236 GAGGCTTGTTTGCTGCGCA 62.198 57.895 10.98 10.98 36.47 6.09
828 1010 3.032033 GGCTTGTTTGCTGCGCAC 61.032 61.111 5.66 4.25 38.71 5.34
829 1011 3.389211 GCTTGTTTGCTGCGCACG 61.389 61.111 5.66 3.93 38.71 5.34
830 1012 2.327592 CTTGTTTGCTGCGCACGA 59.672 55.556 5.66 0.09 38.71 4.35
831 1013 1.081906 CTTGTTTGCTGCGCACGAT 60.082 52.632 5.66 0.00 38.71 3.73
832 1014 0.661187 CTTGTTTGCTGCGCACGATT 60.661 50.000 5.66 0.00 38.71 3.34
833 1015 0.248825 TTGTTTGCTGCGCACGATTT 60.249 45.000 5.66 0.00 38.71 2.17
834 1016 0.933973 TGTTTGCTGCGCACGATTTG 60.934 50.000 5.66 0.00 38.71 2.32
835 1017 1.371512 TTTGCTGCGCACGATTTGG 60.372 52.632 5.66 0.00 38.71 3.28
836 1018 1.790090 TTTGCTGCGCACGATTTGGA 61.790 50.000 5.66 0.00 38.71 3.53
837 1019 2.202349 GCTGCGCACGATTTGGAC 60.202 61.111 5.66 0.00 0.00 4.02
838 1020 2.965147 GCTGCGCACGATTTGGACA 61.965 57.895 5.66 0.00 0.00 4.02
839 1021 1.133253 CTGCGCACGATTTGGACAG 59.867 57.895 5.66 0.00 0.00 3.51
840 1022 2.244436 CTGCGCACGATTTGGACAGG 62.244 60.000 5.66 0.00 0.00 4.00
841 1023 2.480555 CGCACGATTTGGACAGGC 59.519 61.111 0.00 0.00 0.00 4.85
842 1024 2.480555 GCACGATTTGGACAGGCG 59.519 61.111 0.00 0.00 0.00 5.52
867 1049 3.036084 CACGGTGCGCGTCTTCTT 61.036 61.111 8.43 0.00 0.00 2.52
881 1073 0.181350 CTTCTTGCCCCTCGCCTATT 59.819 55.000 0.00 0.00 36.24 1.73
919 1111 0.548682 AGGCTTGGACACTCCCATCT 60.549 55.000 0.00 0.00 35.03 2.90
921 1113 0.908198 GCTTGGACACTCCCATCTCT 59.092 55.000 0.00 0.00 35.03 3.10
923 1115 2.465813 CTTGGACACTCCCATCTCTCT 58.534 52.381 0.00 0.00 35.03 3.10
924 1116 2.151502 TGGACACTCCCATCTCTCTC 57.848 55.000 0.00 0.00 35.03 3.20
925 1117 1.643286 TGGACACTCCCATCTCTCTCT 59.357 52.381 0.00 0.00 35.03 3.10
926 1118 2.043664 TGGACACTCCCATCTCTCTCTT 59.956 50.000 0.00 0.00 35.03 2.85
928 1120 2.693074 GACACTCCCATCTCTCTCTTCC 59.307 54.545 0.00 0.00 0.00 3.46
929 1121 2.038659 CACTCCCATCTCTCTCTTCCC 58.961 57.143 0.00 0.00 0.00 3.97
951 1213 0.531657 CTCACCACTCTGCTCTCAGG 59.468 60.000 0.00 0.00 40.69 3.86
953 1215 0.037512 CACCACTCTGCTCTCAGGTG 60.038 60.000 0.00 0.00 40.69 4.00
956 1218 1.255882 CACTCTGCTCTCAGGTGTCT 58.744 55.000 0.00 0.00 40.69 3.41
957 1219 1.202114 CACTCTGCTCTCAGGTGTCTC 59.798 57.143 0.00 0.00 40.69 3.36
958 1220 1.202989 ACTCTGCTCTCAGGTGTCTCA 60.203 52.381 0.00 0.00 40.69 3.27
1027 1299 1.974875 TAAGTGAGCCGCGTCTGGA 60.975 57.895 4.92 0.00 0.00 3.86
1032 1304 2.992114 AGCCGCGTCTGGACTCTT 60.992 61.111 4.92 0.00 0.00 2.85
1033 1305 2.507324 GCCGCGTCTGGACTCTTC 60.507 66.667 4.92 0.00 0.00 2.87
1041 1313 2.415357 CGTCTGGACTCTTCTGCTTCTC 60.415 54.545 0.00 0.00 0.00 2.87
1065 1337 1.135527 TCGACTCGGTCTCTCTCTCTC 59.864 57.143 0.00 0.00 0.00 3.20
1068 1342 2.431057 GACTCGGTCTCTCTCTCTCTCT 59.569 54.545 0.00 0.00 0.00 3.10
1069 1343 2.431057 ACTCGGTCTCTCTCTCTCTCTC 59.569 54.545 0.00 0.00 0.00 3.20
1070 1344 2.695666 CTCGGTCTCTCTCTCTCTCTCT 59.304 54.545 0.00 0.00 0.00 3.10
1071 1345 2.430694 TCGGTCTCTCTCTCTCTCTCTG 59.569 54.545 0.00 0.00 0.00 3.35
1072 1346 2.565841 GGTCTCTCTCTCTCTCTCTGC 58.434 57.143 0.00 0.00 0.00 4.26
1075 1349 1.945394 CTCTCTCTCTCTCTCTGCTGC 59.055 57.143 0.00 0.00 0.00 5.25
1076 1350 1.561076 TCTCTCTCTCTCTCTGCTGCT 59.439 52.381 0.00 0.00 0.00 4.24
1077 1351 1.945394 CTCTCTCTCTCTCTGCTGCTC 59.055 57.143 0.00 0.00 0.00 4.26
1079 1353 0.747644 TCTCTCTCTCTGCTGCTCGG 60.748 60.000 0.00 0.00 0.00 4.63
1080 1354 1.727511 CTCTCTCTCTGCTGCTCGGG 61.728 65.000 0.00 0.00 0.00 5.14
1083 1383 2.283173 TCTCTGCTGCTCGGGTGA 60.283 61.111 0.00 0.00 0.00 4.02
1146 1447 2.996330 CGAGGGGGCTGGGGATTTT 61.996 63.158 0.00 0.00 0.00 1.82
1223 3976 2.040544 GGTGGATTCTGGTGCGTGG 61.041 63.158 0.00 0.00 0.00 4.94
1224 3977 1.003839 GTGGATTCTGGTGCGTGGA 60.004 57.895 0.00 0.00 0.00 4.02
1225 3978 1.021390 GTGGATTCTGGTGCGTGGAG 61.021 60.000 0.00 0.00 0.00 3.86
1243 3996 0.832135 AGCGTGGTTCTGGAGGAGAA 60.832 55.000 0.00 0.00 38.45 2.87
1547 4605 3.195698 GTCGTGAATCCGGCCTGC 61.196 66.667 0.00 0.00 0.00 4.85
1554 4612 0.533085 GAATCCGGCCTGCTTCTACC 60.533 60.000 0.00 0.00 0.00 3.18
1606 4676 3.086600 GGTGCTGGAGGAGGAGGG 61.087 72.222 0.00 0.00 0.00 4.30
1687 4757 7.389803 TCTTTGAAGTAGAGACTGATCTGAG 57.610 40.000 6.60 0.00 35.52 3.35
1733 4803 0.674534 AACCTGTCTGTCTCGTGGTC 59.325 55.000 0.00 0.00 0.00 4.02
1742 4854 0.798771 GTCTCGTGGTCATCTCGTGC 60.799 60.000 0.00 0.00 0.00 5.34
1878 5257 2.159352 TGTCGATTGCATTCTGCCAATG 60.159 45.455 7.00 1.84 44.23 2.82
1955 5334 4.094590 CACTGGCTCTTCAGATCAATCAAC 59.905 45.833 0.00 0.00 38.11 3.18
1964 5343 0.031178 GATCAATCAACGGGCATGCC 59.969 55.000 29.47 29.47 0.00 4.40
1994 5373 3.650461 AGGCTCCTCTTTCTTCAGAAACT 59.350 43.478 0.00 0.00 38.94 2.66
2002 5393 5.473931 TCTTTCTTCAGAAACTGAGATCGG 58.526 41.667 0.00 0.00 41.75 4.18
2189 5587 3.199289 CCCCCTCCGTCCCATAATATAAC 59.801 52.174 0.00 0.00 0.00 1.89
2224 5622 6.563398 AGCTGTTTTAGTTTGTAAAAACGC 57.437 33.333 2.83 14.00 44.67 4.84
2246 5644 4.101856 CCTTATATTATGGGACCGAGGGT 58.898 47.826 0.00 0.00 39.44 4.34
2268 5666 6.379386 GGTGTAGTTGGCTTTAAATCTGTTC 58.621 40.000 0.00 0.00 0.00 3.18
2275 6180 3.305064 GGCTTTAAATCTGTTCACCGCAA 60.305 43.478 0.00 0.00 0.00 4.85
2353 6264 9.449719 AATCCGTTCATATATTCCCATTTAGTC 57.550 33.333 0.00 0.00 0.00 2.59
2361 6272 9.725019 CATATATTCCCATTTAGTCTAGTTGCA 57.275 33.333 0.00 0.00 0.00 4.08
2602 6514 2.051345 GTGCCCAAACTGCGAACG 60.051 61.111 0.00 0.00 0.00 3.95
2950 8123 4.342862 AATCTCCCTGGTACATGATTCG 57.657 45.455 0.00 0.00 38.20 3.34
3190 8370 3.228188 TGGCACAAGACTGGAAAATCT 57.772 42.857 0.00 0.00 31.92 2.40
3529 8730 6.320672 AGCAGAATCAGGTAAATCTTCATTGG 59.679 38.462 0.00 0.00 0.00 3.16
3573 8775 7.836842 ACTTTGTGTGAAAGGTTTTGTCTAAT 58.163 30.769 0.00 0.00 0.00 1.73
3575 8777 9.150348 CTTTGTGTGAAAGGTTTTGTCTAATTT 57.850 29.630 0.00 0.00 0.00 1.82
3576 8778 9.495572 TTTGTGTGAAAGGTTTTGTCTAATTTT 57.504 25.926 0.00 0.00 0.00 1.82
3989 9342 6.000219 ACAATAAATCTCTGAGCTTGTGTGT 59.000 36.000 0.00 0.00 0.00 3.72
4030 9384 6.183360 CCCAAATCACATCTTGAATAGGACAC 60.183 42.308 0.00 0.00 37.92 3.67
4034 9388 5.482006 TCACATCTTGAATAGGACACACAG 58.518 41.667 0.00 0.00 0.00 3.66
4040 9394 6.228258 TCTTGAATAGGACACACAGTTTACC 58.772 40.000 0.00 0.00 0.00 2.85
4083 9437 3.694566 CCCCTCAAGTTATCCCTTTTTCG 59.305 47.826 0.00 0.00 0.00 3.46
4210 9620 0.461961 AGTTCCGCCTATCTGCTGTC 59.538 55.000 0.00 0.00 0.00 3.51
4253 9780 2.125512 GAACCTCGTCGCATGCCT 60.126 61.111 13.15 0.00 0.00 4.75
4396 9950 3.068691 TCTCTGGCCGTAAGCGCT 61.069 61.111 2.64 2.64 45.17 5.92
4425 9997 2.092055 TCATCATGCTCGTTTCGTTTCG 59.908 45.455 0.00 0.00 0.00 3.46
4535 10111 1.202687 GGCTGGAGCACATGTAGCATA 60.203 52.381 17.09 5.76 44.36 3.14
4536 10112 2.564771 GCTGGAGCACATGTAGCATAA 58.435 47.619 18.31 6.07 41.59 1.90
4548 10124 4.082192 GCATAACGCGTCGAGGAA 57.918 55.556 14.44 0.00 0.00 3.36
4555 10131 2.138596 ACGCGTCGAGGAAGTTTTTA 57.861 45.000 5.58 0.00 0.00 1.52
4559 10135 4.685628 ACGCGTCGAGGAAGTTTTTATTTA 59.314 37.500 5.58 0.00 0.00 1.40
4563 10143 7.269724 CGCGTCGAGGAAGTTTTTATTTATTTT 59.730 33.333 9.75 0.00 0.00 1.82
4564 10144 8.908678 GCGTCGAGGAAGTTTTTATTTATTTTT 58.091 29.630 9.75 0.00 0.00 1.94
4579 10159 7.661127 ATTTATTTTTAAACGGAGGCCAAAC 57.339 32.000 5.01 0.00 0.00 2.93
4598 10178 0.749649 CTCATCGAGGAGGGGTTCTG 59.250 60.000 19.12 0.00 0.00 3.02
4603 10183 1.356738 TCGAGGAGGGGTTCTGAAGTA 59.643 52.381 0.00 0.00 0.00 2.24
4626 10206 3.793144 GCAACGCGAAGAGGCTGG 61.793 66.667 15.93 0.00 0.00 4.85
4631 10211 0.818040 ACGCGAAGAGGCTGGTTTTT 60.818 50.000 15.93 0.00 0.00 1.94
4653 10233 7.956420 TTTTCTCGTGATGTACTTATGTTGT 57.044 32.000 0.00 0.00 0.00 3.32
4654 10234 9.478768 TTTTTCTCGTGATGTACTTATGTTGTA 57.521 29.630 0.00 0.00 0.00 2.41
4655 10235 8.456904 TTTCTCGTGATGTACTTATGTTGTAC 57.543 34.615 0.00 0.00 40.27 2.90
4656 10236 7.387119 TCTCGTGATGTACTTATGTTGTACT 57.613 36.000 0.00 0.00 40.44 2.73
4657 10237 7.470079 TCTCGTGATGTACTTATGTTGTACTC 58.530 38.462 0.00 0.00 40.44 2.59
4658 10238 6.558009 TCGTGATGTACTTATGTTGTACTCC 58.442 40.000 0.00 0.00 40.44 3.85
4659 10239 5.747197 CGTGATGTACTTATGTTGTACTCCC 59.253 44.000 0.00 0.00 40.44 4.30
4660 10240 6.405508 CGTGATGTACTTATGTTGTACTCCCT 60.406 42.308 0.00 0.00 40.44 4.20
4661 10241 6.979238 GTGATGTACTTATGTTGTACTCCCTC 59.021 42.308 0.00 0.00 40.44 4.30
4662 10242 5.927281 TGTACTTATGTTGTACTCCCTCC 57.073 43.478 0.00 0.00 40.44 4.30
4663 10243 4.400251 TGTACTTATGTTGTACTCCCTCCG 59.600 45.833 0.00 0.00 40.44 4.63
4664 10244 3.438183 ACTTATGTTGTACTCCCTCCGT 58.562 45.455 0.00 0.00 0.00 4.69
4665 10245 3.836562 ACTTATGTTGTACTCCCTCCGTT 59.163 43.478 0.00 0.00 0.00 4.44
4666 10246 4.081807 ACTTATGTTGTACTCCCTCCGTTC 60.082 45.833 0.00 0.00 0.00 3.95
4667 10247 0.971386 TGTTGTACTCCCTCCGTTCC 59.029 55.000 0.00 0.00 0.00 3.62
4668 10248 0.108945 GTTGTACTCCCTCCGTTCCG 60.109 60.000 0.00 0.00 0.00 4.30
4669 10249 0.251297 TTGTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
4670 10250 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
4671 10251 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
4672 10252 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
4673 10253 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4674 10254 2.395619 ACTCCCTCCGTTCCGAATTAT 58.604 47.619 0.00 0.00 0.00 1.28
4675 10255 2.770232 ACTCCCTCCGTTCCGAATTATT 59.230 45.455 0.00 0.00 0.00 1.40
4676 10256 3.199289 ACTCCCTCCGTTCCGAATTATTT 59.801 43.478 0.00 0.00 0.00 1.40
4677 10257 3.537580 TCCCTCCGTTCCGAATTATTTG 58.462 45.455 0.00 0.00 0.00 2.32
4678 10258 3.054948 TCCCTCCGTTCCGAATTATTTGT 60.055 43.478 0.00 0.00 0.00 2.83
4679 10259 3.311596 CCCTCCGTTCCGAATTATTTGTC 59.688 47.826 0.00 0.00 0.00 3.18
4680 10260 3.936453 CCTCCGTTCCGAATTATTTGTCA 59.064 43.478 0.00 0.00 0.00 3.58
4681 10261 4.201783 CCTCCGTTCCGAATTATTTGTCAC 60.202 45.833 0.00 0.00 0.00 3.67
4682 10262 4.316645 TCCGTTCCGAATTATTTGTCACA 58.683 39.130 0.00 0.00 0.00 3.58
4683 10263 4.390603 TCCGTTCCGAATTATTTGTCACAG 59.609 41.667 0.00 0.00 0.00 3.66
4684 10264 4.390603 CCGTTCCGAATTATTTGTCACAGA 59.609 41.667 0.00 0.00 0.00 3.41
4685 10265 5.064707 CCGTTCCGAATTATTTGTCACAGAT 59.935 40.000 0.00 0.00 0.00 2.90
4686 10266 6.256975 CCGTTCCGAATTATTTGTCACAGATA 59.743 38.462 0.00 0.00 0.00 1.98
4687 10267 7.042051 CCGTTCCGAATTATTTGTCACAGATAT 60.042 37.037 0.00 0.00 0.00 1.63
4688 10268 7.793888 CGTTCCGAATTATTTGTCACAGATATG 59.206 37.037 0.00 0.00 0.00 1.78
4689 10269 7.728847 TCCGAATTATTTGTCACAGATATGG 57.271 36.000 0.00 0.00 0.00 2.74
4690 10270 7.505258 TCCGAATTATTTGTCACAGATATGGA 58.495 34.615 0.00 0.00 0.00 3.41
4691 10271 8.156820 TCCGAATTATTTGTCACAGATATGGAT 58.843 33.333 0.00 0.00 0.00 3.41
4692 10272 8.232513 CCGAATTATTTGTCACAGATATGGATG 58.767 37.037 0.00 0.00 0.00 3.51
4693 10273 8.777413 CGAATTATTTGTCACAGATATGGATGT 58.223 33.333 0.00 0.00 0.00 3.06
4700 10280 8.940397 TTGTCACAGATATGGATGTATCTAGA 57.060 34.615 0.00 0.00 38.93 2.43
4701 10281 9.539194 TTGTCACAGATATGGATGTATCTAGAT 57.461 33.333 10.73 10.73 38.93 1.98
4702 10282 8.964772 TGTCACAGATATGGATGTATCTAGATG 58.035 37.037 15.79 0.00 38.93 2.90
4703 10283 8.965819 GTCACAGATATGGATGTATCTAGATGT 58.034 37.037 15.79 1.25 38.93 3.06
4733 10313 9.542462 TTAGTTCTAAATACATCCATTTCTCCG 57.458 33.333 0.00 0.00 30.84 4.63
4734 10314 7.792032 AGTTCTAAATACATCCATTTCTCCGA 58.208 34.615 0.00 0.00 30.84 4.55
4735 10315 7.711339 AGTTCTAAATACATCCATTTCTCCGAC 59.289 37.037 0.00 0.00 30.84 4.79
4736 10316 6.213677 TCTAAATACATCCATTTCTCCGACG 58.786 40.000 0.00 0.00 30.84 5.12
4737 10317 4.665833 AATACATCCATTTCTCCGACGA 57.334 40.909 0.00 0.00 0.00 4.20
4738 10318 4.665833 ATACATCCATTTCTCCGACGAA 57.334 40.909 0.00 0.00 0.00 3.85
4739 10319 3.543680 ACATCCATTTCTCCGACGAAT 57.456 42.857 0.00 0.00 0.00 3.34
4740 10320 4.665833 ACATCCATTTCTCCGACGAATA 57.334 40.909 0.00 0.00 0.00 1.75
4741 10321 5.018539 ACATCCATTTCTCCGACGAATAA 57.981 39.130 0.00 0.00 0.00 1.40
4742 10322 5.611374 ACATCCATTTCTCCGACGAATAAT 58.389 37.500 0.00 0.00 0.00 1.28
4743 10323 6.055588 ACATCCATTTCTCCGACGAATAATT 58.944 36.000 0.00 0.00 0.00 1.40
4744 10324 6.542370 ACATCCATTTCTCCGACGAATAATTT 59.458 34.615 0.00 0.00 0.00 1.82
4745 10325 6.358118 TCCATTTCTCCGACGAATAATTTG 57.642 37.500 0.00 0.00 0.00 2.32
4746 10326 6.110033 TCCATTTCTCCGACGAATAATTTGA 58.890 36.000 0.00 0.00 0.00 2.69
4747 10327 6.596106 TCCATTTCTCCGACGAATAATTTGAA 59.404 34.615 0.00 0.00 0.00 2.69
4748 10328 7.119992 TCCATTTCTCCGACGAATAATTTGAAA 59.880 33.333 0.00 0.00 0.00 2.69
4749 10329 7.218204 CCATTTCTCCGACGAATAATTTGAAAC 59.782 37.037 0.00 0.00 0.00 2.78
4750 10330 5.444586 TCTCCGACGAATAATTTGAAACG 57.555 39.130 0.00 0.00 0.00 3.60
4751 10331 4.327898 TCTCCGACGAATAATTTGAAACGG 59.672 41.667 0.00 0.00 39.30 4.44
4752 10332 4.244066 TCCGACGAATAATTTGAAACGGA 58.756 39.130 0.00 0.00 43.35 4.69
4753 10333 4.327898 TCCGACGAATAATTTGAAACGGAG 59.672 41.667 0.00 0.00 41.32 4.63
4754 10334 4.493545 CCGACGAATAATTTGAAACGGAGG 60.494 45.833 0.00 0.00 40.16 4.30
4755 10335 4.493545 CGACGAATAATTTGAAACGGAGGG 60.494 45.833 0.00 0.00 0.00 4.30
4756 10336 4.581868 ACGAATAATTTGAAACGGAGGGA 58.418 39.130 0.00 0.00 0.00 4.20
4925 10508 6.746120 AGTCTAAAAGTCTCGAACAAAGCTA 58.254 36.000 0.00 0.00 0.00 3.32
4953 10538 5.946377 ACAGGGAGCTAAGGAACAAAAATAG 59.054 40.000 0.00 0.00 0.00 1.73
4955 10540 6.830838 CAGGGAGCTAAGGAACAAAAATAGAT 59.169 38.462 0.00 0.00 0.00 1.98
4960 10545 6.608808 AGCTAAGGAACAAAAATAGATGCCAT 59.391 34.615 0.00 0.00 0.00 4.40
5222 10808 7.505248 TGCAATTTCAGATAGCCCATAATAACA 59.495 33.333 0.00 0.00 0.00 2.41
5232 10818 6.500589 AGCCCATAATAACACACATACTCT 57.499 37.500 0.00 0.00 0.00 3.24
5353 10939 6.094464 TGTTCACTGATTGCCATAGAATCTTG 59.906 38.462 0.00 0.00 32.04 3.02
5423 11011 3.997021 ACAAAAGCTACAACGAGAGGATG 59.003 43.478 0.00 0.00 0.00 3.51
5553 11141 5.415415 TTCGACGTAGGAATAGAACTAGC 57.585 43.478 0.00 0.00 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.248280 TTACTGCTTTGCCGAACTCA 57.752 45.000 0.00 0.00 0.00 3.41
23 24 9.825972 CGTATTATATTTGGGATTACTGCTTTG 57.174 33.333 0.00 0.00 0.00 2.77
43 44 9.712305 GGAAGTAGTATCCACTAGTACGTATTA 57.288 37.037 0.00 0.00 39.54 0.98
45 46 7.972301 AGGAAGTAGTATCCACTAGTACGTAT 58.028 38.462 0.00 0.00 39.54 3.06
90 91 4.870636 TGATTCTGGTTTTCAGGGCATAT 58.129 39.130 0.00 0.00 43.53 1.78
131 132 1.466167 CCATCCAACGCTGAGAAAGTG 59.534 52.381 0.00 0.00 42.48 3.16
132 133 1.611673 CCCATCCAACGCTGAGAAAGT 60.612 52.381 0.00 0.00 0.00 2.66
157 158 0.681243 GATCTGAGCCAACCCCAACC 60.681 60.000 0.00 0.00 0.00 3.77
158 159 0.038166 TGATCTGAGCCAACCCCAAC 59.962 55.000 0.00 0.00 0.00 3.77
159 160 0.329261 CTGATCTGAGCCAACCCCAA 59.671 55.000 0.00 0.00 0.00 4.12
160 161 1.565390 CCTGATCTGAGCCAACCCCA 61.565 60.000 0.38 0.00 0.00 4.96
161 162 1.225704 CCTGATCTGAGCCAACCCC 59.774 63.158 0.38 0.00 0.00 4.95
162 163 1.225704 CCCTGATCTGAGCCAACCC 59.774 63.158 0.38 0.00 0.00 4.11
278 293 1.598130 GAACGCAGCCAGTCCAAGT 60.598 57.895 0.00 0.00 0.00 3.16
280 295 2.281484 GGAACGCAGCCAGTCCAA 60.281 61.111 0.00 0.00 0.00 3.53
281 296 3.241530 AGGAACGCAGCCAGTCCA 61.242 61.111 6.47 0.00 0.00 4.02
325 340 4.190001 GAGTTGAGTGTCAGCATCATCAT 58.810 43.478 0.00 0.00 29.40 2.45
326 341 3.007182 TGAGTTGAGTGTCAGCATCATCA 59.993 43.478 0.00 0.00 29.40 3.07
327 342 3.593096 TGAGTTGAGTGTCAGCATCATC 58.407 45.455 0.00 0.00 29.40 2.92
379 399 2.213499 CATTGGTTCGATCAGGTAGGC 58.787 52.381 0.00 0.00 0.00 3.93
386 406 6.762702 TGTACTACTACATTGGTTCGATCA 57.237 37.500 0.00 0.00 0.00 2.92
395 415 8.812147 TCTTGTTCAGTTGTACTACTACATTG 57.188 34.615 9.68 8.06 32.70 2.82
423 445 7.095649 GGTCCAAATAAAACTGATTTGTTCTGC 60.096 37.037 7.19 0.00 40.96 4.26
458 481 0.868602 CCATTAGTGTCCGGCGTACG 60.869 60.000 11.84 11.84 43.80 3.67
463 486 1.146263 CCCTCCATTAGTGTCCGGC 59.854 63.158 0.00 0.00 0.00 6.13
523 599 2.288518 GGTAAGCGAGAGGATGATCCAC 60.289 54.545 14.90 7.61 39.61 4.02
638 766 0.905357 TGCCCTCCTTGCTCTTAGAC 59.095 55.000 0.00 0.00 0.00 2.59
642 770 1.303970 GCTTGCCCTCCTTGCTCTT 60.304 57.895 0.00 0.00 0.00 2.85
678 819 0.752658 TCTGTGTGTGTGGAGGACTG 59.247 55.000 0.00 0.00 0.00 3.51
679 820 1.043816 CTCTGTGTGTGTGGAGGACT 58.956 55.000 0.00 0.00 0.00 3.85
680 821 1.000283 CTCTCTGTGTGTGTGGAGGAC 60.000 57.143 0.00 0.00 0.00 3.85
681 822 1.133482 TCTCTCTGTGTGTGTGGAGGA 60.133 52.381 0.00 0.00 0.00 3.71
683 824 2.228582 CTCTCTCTCTGTGTGTGTGGAG 59.771 54.545 0.00 0.00 0.00 3.86
684 825 2.158608 TCTCTCTCTCTGTGTGTGTGGA 60.159 50.000 0.00 0.00 0.00 4.02
686 827 3.145286 TCTCTCTCTCTCTGTGTGTGTG 58.855 50.000 0.00 0.00 0.00 3.82
689 830 2.290896 CCCTCTCTCTCTCTCTGTGTGT 60.291 54.545 0.00 0.00 0.00 3.72
691 832 1.284785 CCCCTCTCTCTCTCTCTGTGT 59.715 57.143 0.00 0.00 0.00 3.72
692 833 1.410083 CCCCCTCTCTCTCTCTCTGTG 60.410 61.905 0.00 0.00 0.00 3.66
693 834 0.926293 CCCCCTCTCTCTCTCTCTGT 59.074 60.000 0.00 0.00 0.00 3.41
695 836 1.522900 CTCCCCCTCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
696 837 0.478507 CCTCCCCCTCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
700 841 1.541672 CCTCCTCCCCCTCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
701 842 2.710826 GCCTCCTCCCCCTCTCTCT 61.711 68.421 0.00 0.00 0.00 3.10
702 843 2.123033 GCCTCCTCCCCCTCTCTC 60.123 72.222 0.00 0.00 0.00 3.20
703 844 2.260524 AAGCCTCCTCCCCCTCTCT 61.261 63.158 0.00 0.00 0.00 3.10
705 846 2.041928 CAAGCCTCCTCCCCCTCT 59.958 66.667 0.00 0.00 0.00 3.69
712 894 1.583477 GCAGCAAACAAGCCTCCTC 59.417 57.895 0.00 0.00 34.23 3.71
744 926 5.429762 TCTCTCTCTCTCTCTCTCTCCAAAT 59.570 44.000 0.00 0.00 0.00 2.32
751 933 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
754 936 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
755 937 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
756 938 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
759 941 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
760 942 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
761 943 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
762 944 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
763 945 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
764 946 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
765 947 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
766 948 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
767 949 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
768 950 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
769 951 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
770 952 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
771 953 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
772 954 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
773 955 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
774 956 3.312890 CCCTCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
775 957 2.370189 CCCCTCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
776 958 2.022035 TCCCCTCTCTCTCTCTCTCTCT 60.022 54.545 0.00 0.00 0.00 3.10
777 959 2.370189 CTCCCCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
778 960 2.022035 TCTCCCCTCTCTCTCTCTCTCT 60.022 54.545 0.00 0.00 0.00 3.10
779 961 2.370189 CTCTCCCCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
780 962 2.412591 CTCTCCCCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
781 963 1.421646 CCTCTCCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
782 964 1.522900 CCTCTCCCCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
783 965 0.478507 CCCTCTCCCCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
784 966 0.047176 TCCCTCTCCCCTCTCTCTCT 59.953 60.000 0.00 0.00 0.00 3.10
785 967 0.478507 CTCCCTCTCCCCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
786 968 0.998945 CCTCCCTCTCCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
787 969 1.541672 CCTCCCTCTCCCCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
788 970 2.018086 CCCTCCCTCTCCCCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
789 971 2.015726 TCCCTCCCTCTCCCCTCTC 61.016 68.421 0.00 0.00 0.00 3.20
790 972 2.018086 CTCCCTCCCTCTCCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
791 973 2.612251 CTCCCTCCCTCTCCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
792 974 3.039526 CCTCCCTCCCTCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
793 975 3.036959 TCCTCCCTCCCTCTCCCC 61.037 72.222 0.00 0.00 0.00 4.81
794 976 2.612251 CTCCTCCCTCCCTCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
795 977 2.612251 CCTCCTCCCTCCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
796 978 2.123033 GCCTCCTCCCTCCCTCTC 60.123 72.222 0.00 0.00 0.00 3.20
797 979 2.260524 AAGCCTCCTCCCTCCCTCT 61.261 63.158 0.00 0.00 0.00 3.69
798 980 2.069430 CAAGCCTCCTCCCTCCCTC 61.069 68.421 0.00 0.00 0.00 4.30
799 981 2.041928 CAAGCCTCCTCCCTCCCT 59.958 66.667 0.00 0.00 0.00 4.20
800 982 1.501654 AAACAAGCCTCCTCCCTCCC 61.502 60.000 0.00 0.00 0.00 4.30
801 983 0.322906 CAAACAAGCCTCCTCCCTCC 60.323 60.000 0.00 0.00 0.00 4.30
802 984 0.962855 GCAAACAAGCCTCCTCCCTC 60.963 60.000 0.00 0.00 0.00 4.30
803 985 1.075659 GCAAACAAGCCTCCTCCCT 59.924 57.895 0.00 0.00 0.00 4.20
804 986 1.075659 AGCAAACAAGCCTCCTCCC 59.924 57.895 0.00 0.00 34.23 4.30
805 987 1.871126 GCAGCAAACAAGCCTCCTCC 61.871 60.000 0.00 0.00 34.23 4.30
806 988 1.583477 GCAGCAAACAAGCCTCCTC 59.417 57.895 0.00 0.00 34.23 3.71
807 989 2.263741 CGCAGCAAACAAGCCTCCT 61.264 57.895 0.00 0.00 34.23 3.69
808 990 2.256461 CGCAGCAAACAAGCCTCC 59.744 61.111 0.00 0.00 34.23 4.30
821 1003 1.133253 CTGTCCAAATCGTGCGCAG 59.867 57.895 12.22 5.26 0.00 5.18
822 1004 2.324330 CCTGTCCAAATCGTGCGCA 61.324 57.895 5.66 5.66 0.00 6.09
823 1005 2.480555 CCTGTCCAAATCGTGCGC 59.519 61.111 0.00 0.00 0.00 6.09
824 1006 2.480555 GCCTGTCCAAATCGTGCG 59.519 61.111 0.00 0.00 0.00 5.34
825 1007 2.480555 CGCCTGTCCAAATCGTGC 59.519 61.111 0.00 0.00 0.00 5.34
826 1008 2.480555 GCGCCTGTCCAAATCGTG 59.519 61.111 0.00 0.00 0.00 4.35
827 1009 3.118454 CGCGCCTGTCCAAATCGT 61.118 61.111 0.00 0.00 0.00 3.73
828 1010 4.520846 GCGCGCCTGTCCAAATCG 62.521 66.667 23.24 0.00 0.00 3.34
829 1011 3.127533 AGCGCGCCTGTCCAAATC 61.128 61.111 30.33 0.00 0.00 2.17
830 1012 3.434319 CAGCGCGCCTGTCCAAAT 61.434 61.111 30.33 1.73 36.79 2.32
867 1049 0.472471 CCTTAAATAGGCGAGGGGCA 59.528 55.000 0.00 0.00 46.16 5.36
896 1088 2.283529 GGAGTGTCCAAGCCTCCGA 61.284 63.158 0.00 0.00 35.79 4.55
905 1097 1.643286 AGAGAGAGATGGGAGTGTCCA 59.357 52.381 0.00 0.00 38.64 4.02
928 1120 2.608988 AGCAGAGTGGTGAGGGGG 60.609 66.667 0.00 0.00 0.00 5.40
929 1121 1.611851 AGAGCAGAGTGGTGAGGGG 60.612 63.158 0.00 0.00 0.00 4.79
933 1195 0.178950 ACCTGAGAGCAGAGTGGTGA 60.179 55.000 0.00 0.00 45.17 4.02
951 1213 1.301479 GGGAACGGTGGTGAGACAC 60.301 63.158 0.00 0.00 40.60 3.67
997 1269 1.661341 CTCACTTACTCTGCCATGGC 58.339 55.000 30.54 30.54 42.35 4.40
998 1270 1.661341 GCTCACTTACTCTGCCATGG 58.339 55.000 7.63 7.63 0.00 3.66
999 1271 1.661341 GGCTCACTTACTCTGCCATG 58.339 55.000 0.00 0.00 42.79 3.66
1004 1276 0.798771 GACGCGGCTCACTTACTCTG 60.799 60.000 12.47 0.00 0.00 3.35
1027 1299 2.091541 CGAGAGGAGAAGCAGAAGAGT 58.908 52.381 0.00 0.00 0.00 3.24
1032 1304 1.745232 GAGTCGAGAGGAGAAGCAGA 58.255 55.000 0.00 0.00 0.00 4.26
1033 1305 0.376852 CGAGTCGAGAGGAGAAGCAG 59.623 60.000 6.73 0.00 0.00 4.24
1041 1313 0.177141 AGAGAGACCGAGTCGAGAGG 59.823 60.000 15.64 0.00 37.67 3.69
1065 1337 1.674764 ATCACCCGAGCAGCAGAGAG 61.675 60.000 0.00 0.00 0.00 3.20
1068 1342 0.036732 AAAATCACCCGAGCAGCAGA 59.963 50.000 0.00 0.00 0.00 4.26
1069 1343 0.883833 AAAAATCACCCGAGCAGCAG 59.116 50.000 0.00 0.00 0.00 4.24
1070 1344 3.034924 AAAAATCACCCGAGCAGCA 57.965 47.368 0.00 0.00 0.00 4.41
1109 1409 2.736721 TCGCAACACAGAAGCAGATAAC 59.263 45.455 0.00 0.00 0.00 1.89
1146 1447 0.404040 GAAACCCTCCCACACCATCA 59.596 55.000 0.00 0.00 0.00 3.07
1223 3976 1.216710 CTCCTCCAGAACCACGCTC 59.783 63.158 0.00 0.00 0.00 5.03
1224 3977 0.832135 TTCTCCTCCAGAACCACGCT 60.832 55.000 0.00 0.00 36.08 5.07
1225 3978 1.671742 TTCTCCTCCAGAACCACGC 59.328 57.895 0.00 0.00 36.08 5.34
1554 4612 4.335647 AAGCCCCTGCACCGACAG 62.336 66.667 0.00 0.00 41.13 3.51
1687 4757 0.814457 AGAGCACCACGAGATCAGAC 59.186 55.000 0.00 0.00 0.00 3.51
1733 4803 0.390866 AAGTGGAGCAGCACGAGATG 60.391 55.000 0.00 0.00 0.00 2.90
1742 4854 4.100035 TGTCTACCATATGAAGTGGAGCAG 59.900 45.833 3.65 0.00 39.12 4.24
1878 5257 7.974482 TGTCCAATCATGATCAGATATTCAC 57.026 36.000 9.06 0.00 0.00 3.18
1969 5348 3.448934 TCTGAAGAAAGAGGAGCCTGAT 58.551 45.455 0.00 0.00 0.00 2.90
1971 5350 3.692257 TTCTGAAGAAAGAGGAGCCTG 57.308 47.619 0.00 0.00 0.00 4.85
1994 5373 5.360999 AGACAAATACAGATCACCGATCTCA 59.639 40.000 3.50 0.00 45.03 3.27
2002 5393 4.764172 AGCCAGAGACAAATACAGATCAC 58.236 43.478 0.00 0.00 0.00 3.06
2189 5587 6.348621 ACTAAAACAGCTTGCAAAAACATG 57.651 33.333 0.00 0.00 0.00 3.21
2224 5622 4.081087 CACCCTCGGTCCCATAATATAAGG 60.081 50.000 0.00 0.00 31.02 2.69
2246 5644 6.016610 GGTGAACAGATTTAAAGCCAACTACA 60.017 38.462 0.00 0.00 0.00 2.74
2268 5666 6.873605 TCAGTCATAGGATATTAATTGCGGTG 59.126 38.462 0.00 0.00 0.00 4.94
2318 6225 8.999431 GGAATATATGAACGGATTTGTACACAT 58.001 33.333 0.00 0.00 0.00 3.21
2353 6264 9.462174 TTTTTAGATTCACAATGTTGCAACTAG 57.538 29.630 28.61 19.82 0.00 2.57
2381 6292 4.022849 GTGTCAACAAAAAGCTATCTGCCT 60.023 41.667 0.00 0.00 44.23 4.75
2440 6352 4.533707 TGATGCCTAGGCTAGCAGATAAAT 59.466 41.667 33.07 14.94 43.38 1.40
2449 6361 2.890808 TCGTTTGATGCCTAGGCTAG 57.109 50.000 33.07 14.77 42.51 3.42
2450 6362 3.111853 CATCGTTTGATGCCTAGGCTA 57.888 47.619 33.07 20.21 45.06 3.93
2451 6363 1.959042 CATCGTTTGATGCCTAGGCT 58.041 50.000 33.07 19.27 45.06 4.58
2602 6514 8.299262 ACTTACATCACTATTATCAATGCGAC 57.701 34.615 0.00 0.00 0.00 5.19
2950 8123 7.112452 AGCCCTGATAACAATTCCAAAATAC 57.888 36.000 0.00 0.00 0.00 1.89
3112 8292 1.011968 TAATCTTGCGACGCTTGCGT 61.012 50.000 20.76 20.76 34.24 5.24
3203 8383 7.067737 CCACCCTTTTATGTCACCGTTATTATT 59.932 37.037 0.00 0.00 0.00 1.40
3395 8596 4.112634 TCGGATTCTTCATTAACAGCGAG 58.887 43.478 0.00 0.00 0.00 5.03
3529 8730 7.062605 CACAAAGTTGATGATAGTTTCATTGGC 59.937 37.037 0.00 0.00 45.29 4.52
3573 8775 3.358111 TCGCCTGGTCCATCAATAAAA 57.642 42.857 0.00 0.00 0.00 1.52
3575 8777 2.917933 CTTCGCCTGGTCCATCAATAA 58.082 47.619 0.00 0.00 0.00 1.40
3576 8778 1.475034 GCTTCGCCTGGTCCATCAATA 60.475 52.381 0.00 0.00 0.00 1.90
3577 8779 0.749454 GCTTCGCCTGGTCCATCAAT 60.749 55.000 0.00 0.00 0.00 2.57
3578 8780 1.377202 GCTTCGCCTGGTCCATCAA 60.377 57.895 0.00 0.00 0.00 2.57
3580 8782 1.078143 AAGCTTCGCCTGGTCCATC 60.078 57.895 0.00 0.00 0.00 3.51
3589 8791 7.093992 AGATATAGATAAACTGAAGCTTCGCC 58.906 38.462 21.11 0.00 0.00 5.54
3858 9190 8.375506 TGTGATACATGGATCTTTATAAGGACC 58.624 37.037 18.82 4.71 0.00 4.46
3915 9250 8.992349 TGAATCCTATAGTGAAGGAATCAGAAA 58.008 33.333 5.91 0.00 44.46 2.52
3933 9268 9.255029 TCAGGATCGATTATGTATTGAATCCTA 57.745 33.333 0.00 0.00 35.31 2.94
3989 9342 5.070180 TGATTTGGGTTCATGAAAAGCTTGA 59.930 36.000 10.35 0.00 0.00 3.02
4034 9388 1.604604 TGGCAGCAGAACAGGTAAAC 58.395 50.000 0.00 0.00 0.00 2.01
4040 9394 2.421424 GGTTATCTTGGCAGCAGAACAG 59.579 50.000 0.00 0.00 0.00 3.16
4042 9396 1.745653 GGGTTATCTTGGCAGCAGAAC 59.254 52.381 0.00 0.00 0.00 3.01
4113 9467 0.883814 AAGTGCTGACTGCTGTGCTC 60.884 55.000 0.00 0.56 43.37 4.26
4115 9469 0.795085 CTAAGTGCTGACTGCTGTGC 59.205 55.000 0.00 0.00 43.37 4.57
4116 9470 0.795085 GCTAAGTGCTGACTGCTGTG 59.205 55.000 0.00 0.00 43.37 3.66
4253 9780 1.222300 CGTGACGGGTGTTCATCAAA 58.778 50.000 0.00 0.00 0.00 2.69
4291 9842 1.903877 GCTGCTTCTCAGGGTAGGCA 61.904 60.000 0.00 0.00 43.06 4.75
4317 9868 1.484227 CGCGTCCGTGTCAACAAGAA 61.484 55.000 0.00 0.00 0.00 2.52
4396 9950 2.436469 AGCATGATGAACGCGGCA 60.436 55.556 12.47 8.99 0.00 5.69
4425 9997 1.335324 GCCATGAGAAATATGCACCGC 60.335 52.381 0.00 0.00 0.00 5.68
4522 10098 0.650512 ACGCGTTATGCTACATGTGC 59.349 50.000 5.58 10.76 43.27 4.57
4524 10100 1.197055 CGACGCGTTATGCTACATGT 58.803 50.000 15.53 2.69 43.27 3.21
4535 10111 1.292992 AAAAACTTCCTCGACGCGTT 58.707 45.000 15.53 0.00 0.00 4.84
4536 10112 2.138596 TAAAAACTTCCTCGACGCGT 57.861 45.000 13.85 13.85 0.00 6.01
4555 10131 7.446769 AGTTTGGCCTCCGTTTAAAAATAAAT 58.553 30.769 3.32 0.00 0.00 1.40
4559 10135 4.342665 TGAGTTTGGCCTCCGTTTAAAAAT 59.657 37.500 3.32 0.00 0.00 1.82
4563 10143 2.642154 TGAGTTTGGCCTCCGTTTAA 57.358 45.000 3.32 0.00 0.00 1.52
4564 10144 2.706890 GATGAGTTTGGCCTCCGTTTA 58.293 47.619 3.32 0.00 0.00 2.01
4569 10149 0.462759 CCTCGATGAGTTTGGCCTCC 60.463 60.000 3.32 0.00 0.00 4.30
4575 10155 0.905357 ACCCCTCCTCGATGAGTTTG 59.095 55.000 15.38 6.83 0.00 2.93
4579 10159 0.749649 CAGAACCCCTCCTCGATGAG 59.250 60.000 10.47 10.47 0.00 2.90
4631 10211 7.823665 AGTACAACATAAGTACATCACGAGAA 58.176 34.615 6.30 0.00 43.24 2.87
4633 10213 6.691818 GGAGTACAACATAAGTACATCACGAG 59.308 42.308 6.30 0.00 43.24 4.18
4634 10214 6.405065 GGGAGTACAACATAAGTACATCACGA 60.405 42.308 6.30 0.00 43.24 4.35
4635 10215 5.747197 GGGAGTACAACATAAGTACATCACG 59.253 44.000 6.30 0.00 43.24 4.35
4637 10217 6.097839 GGAGGGAGTACAACATAAGTACATCA 59.902 42.308 6.30 0.00 43.24 3.07
4638 10218 6.514063 GGAGGGAGTACAACATAAGTACATC 58.486 44.000 6.30 1.86 43.24 3.06
4639 10219 5.068723 CGGAGGGAGTACAACATAAGTACAT 59.931 44.000 6.30 0.00 43.24 2.29
4641 10221 4.400567 ACGGAGGGAGTACAACATAAGTAC 59.599 45.833 0.00 0.00 41.59 2.73
4642 10222 4.603131 ACGGAGGGAGTACAACATAAGTA 58.397 43.478 0.00 0.00 0.00 2.24
4643 10223 3.438183 ACGGAGGGAGTACAACATAAGT 58.562 45.455 0.00 0.00 0.00 2.24
4644 10224 4.430908 GAACGGAGGGAGTACAACATAAG 58.569 47.826 0.00 0.00 0.00 1.73
4645 10225 3.196254 GGAACGGAGGGAGTACAACATAA 59.804 47.826 0.00 0.00 0.00 1.90
4646 10226 2.762327 GGAACGGAGGGAGTACAACATA 59.238 50.000 0.00 0.00 0.00 2.29
4647 10227 1.553704 GGAACGGAGGGAGTACAACAT 59.446 52.381 0.00 0.00 0.00 2.71
4648 10228 0.971386 GGAACGGAGGGAGTACAACA 59.029 55.000 0.00 0.00 0.00 3.33
4649 10229 3.828657 GGAACGGAGGGAGTACAAC 57.171 57.895 0.00 0.00 0.00 3.32
4663 10243 8.070171 CCATATCTGTGACAAATAATTCGGAAC 58.930 37.037 0.00 0.00 0.00 3.62
4664 10244 7.990314 TCCATATCTGTGACAAATAATTCGGAA 59.010 33.333 0.00 0.00 0.00 4.30
4665 10245 7.505258 TCCATATCTGTGACAAATAATTCGGA 58.495 34.615 0.00 0.00 0.00 4.55
4666 10246 7.728847 TCCATATCTGTGACAAATAATTCGG 57.271 36.000 0.00 0.00 0.00 4.30
4667 10247 8.777413 ACATCCATATCTGTGACAAATAATTCG 58.223 33.333 0.00 0.00 0.00 3.34
4674 10254 9.367160 TCTAGATACATCCATATCTGTGACAAA 57.633 33.333 5.70 0.00 41.17 2.83
4675 10255 8.940397 TCTAGATACATCCATATCTGTGACAA 57.060 34.615 5.70 0.00 41.17 3.18
4676 10256 8.964772 CATCTAGATACATCCATATCTGTGACA 58.035 37.037 4.54 0.00 41.17 3.58
4677 10257 8.965819 ACATCTAGATACATCCATATCTGTGAC 58.034 37.037 4.54 0.00 41.17 3.67
4707 10287 9.542462 CGGAGAAATGGATGTATTTAGAACTAA 57.458 33.333 0.00 0.00 30.78 2.24
4708 10288 8.920174 TCGGAGAAATGGATGTATTTAGAACTA 58.080 33.333 0.00 0.00 30.78 2.24
4709 10289 7.711339 GTCGGAGAAATGGATGTATTTAGAACT 59.289 37.037 0.00 0.00 39.69 3.01
4710 10290 7.306632 CGTCGGAGAAATGGATGTATTTAGAAC 60.307 40.741 0.00 0.00 39.69 3.01
4711 10291 6.700081 CGTCGGAGAAATGGATGTATTTAGAA 59.300 38.462 0.00 0.00 39.69 2.10
4712 10292 6.040054 TCGTCGGAGAAATGGATGTATTTAGA 59.960 38.462 0.00 0.00 39.69 2.10
4713 10293 6.213677 TCGTCGGAGAAATGGATGTATTTAG 58.786 40.000 0.00 0.00 39.69 1.85
4714 10294 6.151663 TCGTCGGAGAAATGGATGTATTTA 57.848 37.500 0.00 0.00 39.69 1.40
4715 10295 5.018539 TCGTCGGAGAAATGGATGTATTT 57.981 39.130 0.00 0.00 39.69 1.40
4716 10296 4.665833 TCGTCGGAGAAATGGATGTATT 57.334 40.909 0.00 0.00 39.69 1.89
4717 10297 4.665833 TTCGTCGGAGAAATGGATGTAT 57.334 40.909 0.00 0.00 39.69 2.29
4718 10298 4.665833 ATTCGTCGGAGAAATGGATGTA 57.334 40.909 0.00 0.00 39.69 2.29
4719 10299 3.543680 ATTCGTCGGAGAAATGGATGT 57.456 42.857 0.00 0.00 39.69 3.06
4720 10300 6.545504 AATTATTCGTCGGAGAAATGGATG 57.454 37.500 0.00 0.00 39.69 3.51
4721 10301 6.765989 TCAAATTATTCGTCGGAGAAATGGAT 59.234 34.615 0.00 0.00 39.69 3.41
4722 10302 6.110033 TCAAATTATTCGTCGGAGAAATGGA 58.890 36.000 0.00 0.00 39.69 3.41
4723 10303 6.358118 TCAAATTATTCGTCGGAGAAATGG 57.642 37.500 0.00 0.00 39.69 3.16
4724 10304 7.045612 CGTTTCAAATTATTCGTCGGAGAAATG 60.046 37.037 0.00 0.00 39.69 2.32
4725 10305 6.959311 CGTTTCAAATTATTCGTCGGAGAAAT 59.041 34.615 0.00 0.00 39.69 2.17
4726 10306 6.301108 CGTTTCAAATTATTCGTCGGAGAAA 58.699 36.000 0.00 0.00 39.69 2.52
4727 10307 5.163933 CCGTTTCAAATTATTCGTCGGAGAA 60.164 40.000 0.00 0.00 39.69 2.87
4728 10308 4.327898 CCGTTTCAAATTATTCGTCGGAGA 59.672 41.667 0.00 0.00 38.03 3.71
4729 10309 4.327898 TCCGTTTCAAATTATTCGTCGGAG 59.672 41.667 0.00 0.00 39.45 4.63
4730 10310 4.244066 TCCGTTTCAAATTATTCGTCGGA 58.756 39.130 0.00 0.00 41.50 4.55
4731 10311 4.493545 CCTCCGTTTCAAATTATTCGTCGG 60.494 45.833 0.00 0.00 37.29 4.79
4732 10312 4.493545 CCCTCCGTTTCAAATTATTCGTCG 60.494 45.833 0.00 0.00 0.00 5.12
4733 10313 4.632688 TCCCTCCGTTTCAAATTATTCGTC 59.367 41.667 0.00 0.00 0.00 4.20
4734 10314 4.581868 TCCCTCCGTTTCAAATTATTCGT 58.418 39.130 0.00 0.00 0.00 3.85
4735 10315 4.634443 ACTCCCTCCGTTTCAAATTATTCG 59.366 41.667 0.00 0.00 0.00 3.34
4736 10316 6.822170 AGTACTCCCTCCGTTTCAAATTATTC 59.178 38.462 0.00 0.00 0.00 1.75
4737 10317 6.718294 AGTACTCCCTCCGTTTCAAATTATT 58.282 36.000 0.00 0.00 0.00 1.40
4738 10318 6.309389 AGTACTCCCTCCGTTTCAAATTAT 57.691 37.500 0.00 0.00 0.00 1.28
4739 10319 5.750352 AGTACTCCCTCCGTTTCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
4740 10320 4.635699 AGTACTCCCTCCGTTTCAAATT 57.364 40.909 0.00 0.00 0.00 1.82
4741 10321 5.952347 ATAGTACTCCCTCCGTTTCAAAT 57.048 39.130 0.00 0.00 0.00 2.32
4742 10322 6.837568 AGATATAGTACTCCCTCCGTTTCAAA 59.162 38.462 0.00 0.00 0.00 2.69
4743 10323 6.264744 CAGATATAGTACTCCCTCCGTTTCAA 59.735 42.308 0.00 0.00 0.00 2.69
4744 10324 5.768662 CAGATATAGTACTCCCTCCGTTTCA 59.231 44.000 0.00 0.00 0.00 2.69
4745 10325 5.769162 ACAGATATAGTACTCCCTCCGTTTC 59.231 44.000 0.00 0.00 0.00 2.78
4746 10326 5.535406 CACAGATATAGTACTCCCTCCGTTT 59.465 44.000 0.00 0.00 0.00 3.60
4747 10327 5.071370 CACAGATATAGTACTCCCTCCGTT 58.929 45.833 0.00 0.00 0.00 4.44
4748 10328 4.104420 ACACAGATATAGTACTCCCTCCGT 59.896 45.833 0.00 0.00 0.00 4.69
4749 10329 4.653868 ACACAGATATAGTACTCCCTCCG 58.346 47.826 0.00 0.00 0.00 4.63
4750 10330 7.176490 ACATACACAGATATAGTACTCCCTCC 58.824 42.308 0.00 0.00 0.00 4.30
4751 10331 9.908747 ATACATACACAGATATAGTACTCCCTC 57.091 37.037 0.00 0.00 0.00 4.30
4752 10332 9.688091 CATACATACACAGATATAGTACTCCCT 57.312 37.037 0.00 0.00 0.00 4.20
4753 10333 9.682465 TCATACATACACAGATATAGTACTCCC 57.318 37.037 0.00 0.00 0.00 4.30
4756 10336 9.163899 CCGTCATACATACACAGATATAGTACT 57.836 37.037 0.00 0.00 0.00 2.73
4832 10412 4.804420 ATGCAGAGGCCGGGGAGA 62.804 66.667 2.18 0.00 40.13 3.71
4833 10413 3.801997 AATGCAGAGGCCGGGGAG 61.802 66.667 2.18 0.00 40.13 4.30
4897 10478 9.136952 GCTTTGTTCGAGACTTTTAGACTTATA 57.863 33.333 0.00 0.00 0.00 0.98
4925 10508 1.903183 GTTCCTTAGCTCCCTGTGAGT 59.097 52.381 0.00 0.00 43.48 3.41
4960 10545 2.963101 TCTATCTTTTGCTAGCCGGCTA 59.037 45.455 33.24 33.24 0.00 3.93
5203 10789 6.493189 TGTGTGTTATTATGGGCTATCTGA 57.507 37.500 0.00 0.00 0.00 3.27
5353 10939 0.537188 TTCTCGATTGTCCTCTGGCC 59.463 55.000 0.00 0.00 0.00 5.36
5423 11011 2.225491 TGATTAAACGCAACTGGACTGC 59.775 45.455 0.00 0.00 36.41 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.