Multiple sequence alignment - TraesCS2A01G325900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G325900 chr2A 100.000 6272 0 0 1 6272 556111266 556104995 0.000000e+00 11583
1 TraesCS2A01G325900 chr2A 94.501 4601 196 23 1685 6271 558089353 558093910 0.000000e+00 7042
2 TraesCS2A01G325900 chr2A 94.052 1261 41 16 373 1625 558088156 558089390 0.000000e+00 1882
3 TraesCS2A01G325900 chr2A 86.038 838 98 13 3285 4116 557400726 557401550 0.000000e+00 881
4 TraesCS2A01G325900 chr2A 83.958 854 109 17 3327 4172 557319449 557320282 0.000000e+00 793
5 TraesCS2A01G325900 chr2A 83.019 848 114 17 3327 4164 557059021 557059848 0.000000e+00 741
6 TraesCS2A01G325900 chr2A 96.817 377 9 1 1 374 558087448 558087824 1.480000e-175 627
7 TraesCS2A01G325900 chr2A 84.436 257 27 8 2144 2396 557058186 557058433 2.260000e-59 241
8 TraesCS2A01G325900 chr2A 81.726 197 21 8 2144 2328 557317943 557318136 3.920000e-32 150
9 TraesCS2A01G325900 chr2A 92.473 93 6 1 1515 1607 557399595 557399686 1.420000e-26 132
10 TraesCS2A01G325900 chr2D 94.892 4601 175 23 1688 6271 430383582 430388139 0.000000e+00 7140
11 TraesCS2A01G325900 chr2D 94.166 2674 85 21 1688 4353 429693200 429690590 0.000000e+00 4008
12 TraesCS2A01G325900 chr2D 93.426 1947 114 9 4327 6269 429690586 429688650 0.000000e+00 2874
13 TraesCS2A01G325900 chr2D 92.999 1257 59 18 378 1625 430382380 430383616 0.000000e+00 1807
14 TraesCS2A01G325900 chr2D 90.424 1368 108 12 3277 4642 429740480 429739134 0.000000e+00 1779
15 TraesCS2A01G325900 chr2D 90.938 1269 67 22 373 1625 429743239 429742003 0.000000e+00 1663
16 TraesCS2A01G325900 chr2D 85.697 846 105 12 3287 4122 429835761 429834922 0.000000e+00 878
17 TraesCS2A01G325900 chr2D 89.758 703 44 14 390 1076 429694540 429693850 0.000000e+00 874
18 TraesCS2A01G325900 chr2D 94.314 510 25 2 1119 1625 429693674 429693166 0.000000e+00 778
19 TraesCS2A01G325900 chr2D 80.019 1071 145 39 4737 5785 429739070 429738047 0.000000e+00 728
20 TraesCS2A01G325900 chr2D 92.614 352 23 1 3 351 429743896 429743545 2.610000e-138 503
21 TraesCS2A01G325900 chr2D 92.169 332 21 3 27 354 429695071 429694741 1.230000e-126 464
22 TraesCS2A01G325900 chr2D 82.689 543 64 13 1900 2415 429741909 429741370 7.410000e-124 455
23 TraesCS2A01G325900 chr2D 93.617 282 15 1 59 337 430381711 430381992 9.720000e-113 418
24 TraesCS2A01G325900 chr2D 87.744 359 29 7 2932 3281 429741360 429741008 7.570000e-109 405
25 TraesCS2A01G325900 chr2D 81.922 437 63 10 2415 2846 603723369 603723794 7.730000e-94 355
26 TraesCS2A01G325900 chr2D 96.350 137 4 1 1 137 429792102 429791967 2.280000e-54 224
27 TraesCS2A01G325900 chr2D 93.548 93 6 0 1515 1607 429837164 429837072 8.480000e-29 139
28 TraesCS2A01G325900 chr2B 93.368 3830 214 18 2445 6271 507194023 507190231 0.000000e+00 5629
29 TraesCS2A01G325900 chr2B 89.337 2279 189 19 3285 5536 506509277 506507026 0.000000e+00 2813
30 TraesCS2A01G325900 chr2B 88.462 1274 66 34 381 1625 507196287 507195066 0.000000e+00 1463
31 TraesCS2A01G325900 chr2B 86.108 835 97 13 3288 4116 507410573 507409752 0.000000e+00 881
32 TraesCS2A01G325900 chr2B 95.307 554 23 1 1900 2453 507194935 507194385 0.000000e+00 876
33 TraesCS2A01G325900 chr2B 81.232 1039 148 30 3327 4344 507756042 507755030 0.000000e+00 795
34 TraesCS2A01G325900 chr2B 92.456 517 24 4 1900 2415 506510725 506510223 0.000000e+00 725
35 TraesCS2A01G325900 chr2B 84.524 504 59 15 2405 2901 577439599 577440090 1.220000e-131 481
36 TraesCS2A01G325900 chr2B 91.531 307 14 2 1 295 507196951 507196645 4.520000e-111 412
37 TraesCS2A01G325900 chr2B 87.569 362 33 4 2932 3281 506510213 506509852 5.850000e-110 409
38 TraesCS2A01G325900 chr2B 78.000 500 62 26 2439 2913 750337711 750338187 2.880000e-68 270
39 TraesCS2A01G325900 chr2B 81.337 359 29 17 1271 1615 506511160 506510826 2.240000e-64 257
40 TraesCS2A01G325900 chr2B 93.798 129 8 0 1497 1625 507412056 507411928 1.780000e-45 195
41 TraesCS2A01G325900 chr2B 95.294 85 4 0 1688 1772 507411962 507411878 1.100000e-27 135
42 TraesCS2A01G325900 chr2B 88.182 110 10 1 1516 1625 507506516 507506410 1.840000e-25 128
43 TraesCS2A01G325900 chr6D 87.045 494 50 9 2417 2902 28405943 28405456 4.280000e-151 545
44 TraesCS2A01G325900 chr6D 81.410 468 72 9 2439 2899 312817068 312817527 9.930000e-98 368
45 TraesCS2A01G325900 chr6A 82.062 485 65 15 2416 2896 449684856 449685322 1.640000e-105 394
46 TraesCS2A01G325900 chr4B 76.923 195 35 5 3044 3229 572914882 572914689 1.110000e-17 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G325900 chr2A 556104995 556111266 6271 True 11583.000000 11583 100.000000 1 6272 1 chr2A.!!$R1 6271
1 TraesCS2A01G325900 chr2A 558087448 558093910 6462 False 3183.666667 7042 95.123333 1 6271 3 chr2A.!!$F4 6270
2 TraesCS2A01G325900 chr2A 557399595 557401550 1955 False 506.500000 881 89.255500 1515 4116 2 chr2A.!!$F3 2601
3 TraesCS2A01G325900 chr2A 557058186 557059848 1662 False 491.000000 741 83.727500 2144 4164 2 chr2A.!!$F1 2020
4 TraesCS2A01G325900 chr2A 557317943 557320282 2339 False 471.500000 793 82.842000 2144 4172 2 chr2A.!!$F2 2028
5 TraesCS2A01G325900 chr2D 430381711 430388139 6428 False 3121.666667 7140 93.836000 59 6271 3 chr2D.!!$F2 6212
6 TraesCS2A01G325900 chr2D 429688650 429695071 6421 True 1799.600000 4008 92.766600 27 6269 5 chr2D.!!$R2 6242
7 TraesCS2A01G325900 chr2D 429738047 429743896 5849 True 922.166667 1779 87.404667 3 5785 6 chr2D.!!$R3 5782
8 TraesCS2A01G325900 chr2D 429834922 429837164 2242 True 508.500000 878 89.622500 1515 4122 2 chr2D.!!$R4 2607
9 TraesCS2A01G325900 chr2B 507190231 507196951 6720 True 2095.000000 5629 92.167000 1 6271 4 chr2B.!!$R4 6270
10 TraesCS2A01G325900 chr2B 506507026 506511160 4134 True 1051.000000 2813 87.674750 1271 5536 4 chr2B.!!$R3 4265
11 TraesCS2A01G325900 chr2B 507755030 507756042 1012 True 795.000000 795 81.232000 3327 4344 1 chr2B.!!$R2 1017
12 TraesCS2A01G325900 chr2B 507409752 507412056 2304 True 403.666667 881 91.733333 1497 4116 3 chr2B.!!$R5 2619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 1326 0.805614 CTCTTCTCGGTTCTCGCTCA 59.194 55.000 0.00 0.00 39.05 4.26 F
1611 2179 0.037303 ATCTGCTTGAGGTGGTGGTG 59.963 55.000 0.00 0.00 0.00 4.17 F
1654 2222 0.179045 AGCAGCGGAACACAAGAGTT 60.179 50.000 0.00 0.00 0.00 3.01 F
1655 2223 0.235926 GCAGCGGAACACAAGAGTTC 59.764 55.000 2.34 2.34 45.50 3.01 F
1705 2273 0.247736 ACGATCTGCTTGAGGTGGTC 59.752 55.000 0.00 0.00 0.00 4.02 F
1728 2347 0.392327 GAGGAGGAAGCAGACAAGGC 60.392 60.000 0.00 0.00 0.00 4.35 F
1836 2506 0.822164 TAGCGGCCAAGGAGTAAGAC 59.178 55.000 2.24 0.00 0.00 3.01 F
1936 2608 1.070914 TGTGCCACCTCGAACATGTTA 59.929 47.619 11.95 0.00 0.00 2.41 F
4093 7695 0.032515 TAGCCCATCCAGAACCGAGA 60.033 55.000 0.00 0.00 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 2460 0.392998 CACGGCCCAGAGCTTGTAAT 60.393 55.000 0.00 0.0 43.05 1.89 R
2879 4714 1.279271 AGGGAAACGCTAATGCTCTGT 59.721 47.619 0.00 0.0 36.97 3.41 R
3466 7054 2.117865 AGATTCCTTCAGCCTCCTCTG 58.882 52.381 0.00 0.0 35.46 3.35 R
3648 7240 7.063780 GCATTTGATACTTTGTGGAAGAAATGG 59.936 37.037 0.00 0.0 36.88 3.16 R
3696 7288 1.726791 CTGTTGCTAATCTTGCGACGT 59.273 47.619 0.00 0.0 45.18 4.34 R
3986 7588 7.880160 AATGGATCGGATTCTTCATTAACAA 57.120 32.000 0.00 0.0 0.00 2.83 R
4093 7695 7.890127 TGGTCAATGAAGATTTACCTGATTCTT 59.110 33.333 0.00 0.0 36.94 2.52 R
4122 7724 6.311200 GCTTTCACAAAGTTGATGACAGTTTT 59.689 34.615 0.00 0.0 40.64 2.43 R
5668 9384 0.846015 ATATGCTACAAGGGCAGCCA 59.154 50.000 15.19 0.0 43.15 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 174 4.026356 AGAGGATGGAAACTCAGGTTTG 57.974 45.455 0.00 0.00 44.58 2.93
296 309 2.603776 ACCCGCTTCGGTCTTCCT 60.604 61.111 4.47 0.00 46.80 3.36
302 315 1.893919 GCTTCGGTCTTCCTGCTCCT 61.894 60.000 0.00 0.00 0.00 3.69
370 383 1.154073 GTCCTCCACGTGTAGCGAC 60.154 63.158 15.65 13.28 44.77 5.19
931 1326 0.805614 CTCTTCTCGGTTCTCGCTCA 59.194 55.000 0.00 0.00 39.05 4.26
957 1352 1.270305 CCGCTCTCAAGTTTCTCACCA 60.270 52.381 0.00 0.00 0.00 4.17
971 1366 1.076044 CACCACCATCCCCAATCCC 60.076 63.158 0.00 0.00 0.00 3.85
1044 1440 1.289066 CGTCGGGCTCTGTTTCTGA 59.711 57.895 0.00 0.00 0.00 3.27
1063 1459 1.388065 ATCTCCAACTCTCGGCTCGG 61.388 60.000 0.00 0.00 0.00 4.63
1077 1473 1.813192 CTCGGCCTCTCTGTCCTTC 59.187 63.158 0.00 0.00 0.00 3.46
1081 1477 1.404851 CGGCCTCTCTGTCCTTCTTTC 60.405 57.143 0.00 0.00 0.00 2.62
1143 1680 0.245266 TTTATCCTCTCACGCACGCA 59.755 50.000 0.00 0.00 0.00 5.24
1249 1786 4.700365 GGCGCGTGGTTTTGGAGC 62.700 66.667 8.43 0.00 0.00 4.70
1352 1898 2.124942 GCAGAGCAGCCCAGTACC 60.125 66.667 0.00 0.00 0.00 3.34
1588 2156 1.303236 TGGTGCAGGGATTTCACGG 60.303 57.895 0.00 0.00 0.00 4.94
1590 2158 1.305930 GGTGCAGGGATTTCACGGTC 61.306 60.000 0.00 0.00 0.00 4.79
1591 2159 1.375396 TGCAGGGATTTCACGGTCG 60.375 57.895 0.00 0.00 0.00 4.79
1592 2160 1.079405 GCAGGGATTTCACGGTCGA 60.079 57.895 0.00 0.00 0.00 4.20
1593 2161 0.462047 GCAGGGATTTCACGGTCGAT 60.462 55.000 0.00 0.00 0.00 3.59
1594 2162 1.571919 CAGGGATTTCACGGTCGATC 58.428 55.000 0.00 0.00 0.00 3.69
1595 2163 1.137086 CAGGGATTTCACGGTCGATCT 59.863 52.381 0.00 0.00 0.00 2.75
1596 2164 1.137086 AGGGATTTCACGGTCGATCTG 59.863 52.381 0.00 0.00 0.00 2.90
1597 2165 0.931005 GGATTTCACGGTCGATCTGC 59.069 55.000 0.00 0.00 0.00 4.26
1598 2166 1.471676 GGATTTCACGGTCGATCTGCT 60.472 52.381 0.00 0.00 0.00 4.24
1599 2167 2.271800 GATTTCACGGTCGATCTGCTT 58.728 47.619 0.00 0.00 0.00 3.91
1600 2168 1.428448 TTTCACGGTCGATCTGCTTG 58.572 50.000 0.00 0.00 0.00 4.01
1601 2169 0.601057 TTCACGGTCGATCTGCTTGA 59.399 50.000 0.00 0.00 0.00 3.02
1602 2170 0.171231 TCACGGTCGATCTGCTTGAG 59.829 55.000 0.00 0.00 0.00 3.02
1603 2171 0.803768 CACGGTCGATCTGCTTGAGG 60.804 60.000 0.00 0.00 0.00 3.86
1604 2172 1.251527 ACGGTCGATCTGCTTGAGGT 61.252 55.000 0.00 0.00 0.00 3.85
1605 2173 0.803768 CGGTCGATCTGCTTGAGGTG 60.804 60.000 0.00 0.00 0.00 4.00
1606 2174 0.460987 GGTCGATCTGCTTGAGGTGG 60.461 60.000 0.00 0.00 0.00 4.61
1607 2175 0.247736 GTCGATCTGCTTGAGGTGGT 59.752 55.000 0.00 0.00 0.00 4.16
1608 2176 0.247460 TCGATCTGCTTGAGGTGGTG 59.753 55.000 0.00 0.00 0.00 4.17
1609 2177 0.742281 CGATCTGCTTGAGGTGGTGG 60.742 60.000 0.00 0.00 0.00 4.61
1610 2178 0.326264 GATCTGCTTGAGGTGGTGGT 59.674 55.000 0.00 0.00 0.00 4.16
1611 2179 0.037303 ATCTGCTTGAGGTGGTGGTG 59.963 55.000 0.00 0.00 0.00 4.17
1612 2180 1.601759 CTGCTTGAGGTGGTGGTGG 60.602 63.158 0.00 0.00 0.00 4.61
1613 2181 2.055689 CTGCTTGAGGTGGTGGTGGA 62.056 60.000 0.00 0.00 0.00 4.02
1614 2182 1.302832 GCTTGAGGTGGTGGTGGAG 60.303 63.158 0.00 0.00 0.00 3.86
1615 2183 1.376466 CTTGAGGTGGTGGTGGAGG 59.624 63.158 0.00 0.00 0.00 4.30
1616 2184 1.074090 TTGAGGTGGTGGTGGAGGA 60.074 57.895 0.00 0.00 0.00 3.71
1617 2185 1.127567 TTGAGGTGGTGGTGGAGGAG 61.128 60.000 0.00 0.00 0.00 3.69
1618 2186 2.203998 AGGTGGTGGTGGAGGAGG 60.204 66.667 0.00 0.00 0.00 4.30
1619 2187 2.203938 GGTGGTGGTGGAGGAGGA 60.204 66.667 0.00 0.00 0.00 3.71
1620 2188 1.846124 GGTGGTGGTGGAGGAGGAA 60.846 63.158 0.00 0.00 0.00 3.36
1621 2189 1.679898 GTGGTGGTGGAGGAGGAAG 59.320 63.158 0.00 0.00 0.00 3.46
1622 2190 2.224159 TGGTGGTGGAGGAGGAAGC 61.224 63.158 0.00 0.00 0.00 3.86
1623 2191 2.224159 GGTGGTGGAGGAGGAAGCA 61.224 63.158 0.00 0.00 0.00 3.91
1624 2192 1.298014 GTGGTGGAGGAGGAAGCAG 59.702 63.158 0.00 0.00 0.00 4.24
1625 2193 2.270527 GGTGGAGGAGGAAGCAGC 59.729 66.667 0.00 0.00 0.00 5.25
1626 2194 2.596851 GGTGGAGGAGGAAGCAGCA 61.597 63.158 0.00 0.00 0.00 4.41
1627 2195 1.078567 GTGGAGGAGGAAGCAGCAG 60.079 63.158 0.00 0.00 0.00 4.24
1628 2196 2.124778 GGAGGAGGAAGCAGCAGC 60.125 66.667 0.00 0.00 42.56 5.25
1629 2197 2.124778 GAGGAGGAAGCAGCAGCC 60.125 66.667 0.00 0.00 43.56 4.85
1630 2198 4.093291 AGGAGGAAGCAGCAGCCG 62.093 66.667 0.00 0.00 43.56 5.52
1631 2199 4.400961 GGAGGAAGCAGCAGCCGT 62.401 66.667 0.00 0.00 43.56 5.68
1632 2200 3.123620 GAGGAAGCAGCAGCCGTG 61.124 66.667 0.00 0.00 43.56 4.94
1633 2201 4.711949 AGGAAGCAGCAGCCGTGG 62.712 66.667 0.00 0.00 43.56 4.94
1635 2203 2.047274 GAAGCAGCAGCCGTGGTA 60.047 61.111 0.00 0.00 43.56 3.25
1636 2204 2.046892 AAGCAGCAGCCGTGGTAG 60.047 61.111 0.00 0.00 43.56 3.18
1637 2205 4.767255 AGCAGCAGCCGTGGTAGC 62.767 66.667 0.00 0.00 43.56 3.58
1639 2207 2.816958 CAGCAGCCGTGGTAGCAG 60.817 66.667 0.00 0.00 31.49 4.24
1640 2208 4.767255 AGCAGCCGTGGTAGCAGC 62.767 66.667 0.00 0.00 42.50 5.25
1646 2214 2.048597 CGTGGTAGCAGCGGAACA 60.049 61.111 0.00 0.00 0.00 3.18
1647 2215 2.380410 CGTGGTAGCAGCGGAACAC 61.380 63.158 8.16 8.16 0.00 3.32
1648 2216 1.301401 GTGGTAGCAGCGGAACACA 60.301 57.895 12.33 0.07 0.00 3.72
1649 2217 0.882927 GTGGTAGCAGCGGAACACAA 60.883 55.000 12.33 0.00 0.00 3.33
1650 2218 0.602638 TGGTAGCAGCGGAACACAAG 60.603 55.000 0.00 0.00 0.00 3.16
1651 2219 0.320421 GGTAGCAGCGGAACACAAGA 60.320 55.000 0.00 0.00 0.00 3.02
1652 2220 1.071605 GTAGCAGCGGAACACAAGAG 58.928 55.000 0.00 0.00 0.00 2.85
1653 2221 0.679505 TAGCAGCGGAACACAAGAGT 59.320 50.000 0.00 0.00 0.00 3.24
1654 2222 0.179045 AGCAGCGGAACACAAGAGTT 60.179 50.000 0.00 0.00 0.00 3.01
1655 2223 0.235926 GCAGCGGAACACAAGAGTTC 59.764 55.000 2.34 2.34 45.50 3.01
1656 2224 1.871080 CAGCGGAACACAAGAGTTCT 58.129 50.000 9.60 0.00 45.52 3.01
1660 2228 3.861569 CGGAACACAAGAGTTCTGTTC 57.138 47.619 9.99 0.00 45.48 3.18
1662 2230 3.861569 GAACACAAGAGTTCTGTTCCG 57.138 47.619 3.59 0.00 43.46 4.30
1663 2231 2.981859 ACACAAGAGTTCTGTTCCGT 57.018 45.000 0.00 0.00 0.00 4.69
1664 2232 2.822764 ACACAAGAGTTCTGTTCCGTC 58.177 47.619 0.00 0.00 0.00 4.79
1665 2233 2.135933 CACAAGAGTTCTGTTCCGTCC 58.864 52.381 0.00 0.00 0.00 4.79
1666 2234 1.070289 ACAAGAGTTCTGTTCCGTCCC 59.930 52.381 0.00 0.00 0.00 4.46
1667 2235 0.317479 AAGAGTTCTGTTCCGTCCCG 59.683 55.000 0.00 0.00 0.00 5.14
1668 2236 1.737008 GAGTTCTGTTCCGTCCCGC 60.737 63.158 0.00 0.00 0.00 6.13
1669 2237 2.156051 GAGTTCTGTTCCGTCCCGCT 62.156 60.000 0.00 0.00 0.00 5.52
1670 2238 1.737008 GTTCTGTTCCGTCCCGCTC 60.737 63.158 0.00 0.00 0.00 5.03
1671 2239 1.906824 TTCTGTTCCGTCCCGCTCT 60.907 57.895 0.00 0.00 0.00 4.09
1672 2240 0.609957 TTCTGTTCCGTCCCGCTCTA 60.610 55.000 0.00 0.00 0.00 2.43
1673 2241 1.030488 TCTGTTCCGTCCCGCTCTAG 61.030 60.000 0.00 0.00 0.00 2.43
1674 2242 1.303888 TGTTCCGTCCCGCTCTAGT 60.304 57.895 0.00 0.00 0.00 2.57
1675 2243 1.139095 GTTCCGTCCCGCTCTAGTG 59.861 63.158 0.00 0.00 0.00 2.74
1676 2244 2.050350 TTCCGTCCCGCTCTAGTGG 61.050 63.158 2.41 2.41 45.02 4.00
1686 2254 2.293170 CGCTCTAGTGGAGACTGATCA 58.707 52.381 7.84 0.00 44.45 2.92
1705 2273 0.247736 ACGATCTGCTTGAGGTGGTC 59.752 55.000 0.00 0.00 0.00 4.02
1728 2347 0.392327 GAGGAGGAAGCAGACAAGGC 60.392 60.000 0.00 0.00 0.00 4.35
1808 2472 6.538021 AGATGCTTCTGTTATTACAAGCTCTG 59.462 38.462 9.29 0.00 38.42 3.35
1836 2506 0.822164 TAGCGGCCAAGGAGTAAGAC 59.178 55.000 2.24 0.00 0.00 3.01
1923 2595 1.149361 TCGACGTTTCTGTGTGCCAC 61.149 55.000 0.00 0.00 34.56 5.01
1936 2608 1.070914 TGTGCCACCTCGAACATGTTA 59.929 47.619 11.95 0.00 0.00 2.41
1937 2609 2.147958 GTGCCACCTCGAACATGTTAA 58.852 47.619 11.95 1.88 0.00 2.01
2398 3370 9.167311 GTTAGTGAACATGACTATCCTTGATTT 57.833 33.333 0.00 0.00 35.48 2.17
2790 4625 3.244981 ACGTGGTAGGCAAGGGAAATAAA 60.245 43.478 0.00 0.00 0.00 1.40
2879 4714 4.193334 CTCCACGCGATCAGCCGA 62.193 66.667 15.93 0.00 44.76 5.54
3422 7010 6.133356 TGAACATTTAGAAGGAAAGGTTGGT 58.867 36.000 3.92 0.00 41.82 3.67
3648 7240 4.335416 TCAAGATGGATGGGAGAAACAAC 58.665 43.478 0.00 0.00 0.00 3.32
3696 7288 2.650196 GATGTTGGCCAGCGCAAA 59.350 55.556 15.43 0.00 36.38 3.68
3772 7364 5.804446 TGGCACAAAACTGGAAAATCCAAAA 60.804 36.000 0.11 0.00 40.79 2.44
3986 7588 1.625315 TGAGCAGTCTGTAATGTGCCT 59.375 47.619 0.93 0.00 36.54 4.75
4093 7695 0.032515 TAGCCCATCCAGAACCGAGA 60.033 55.000 0.00 0.00 0.00 4.04
4122 7724 9.699410 AATCAGGTAAATCTTCATTGACCAATA 57.301 29.630 4.37 0.00 44.04 1.90
4283 7897 2.054799 TGCAATACTAGGATCCCACCC 58.945 52.381 8.55 0.00 0.00 4.61
4360 8006 1.134367 CAAACTCGATGTAGAGGCCGA 59.866 52.381 0.00 0.00 42.31 5.54
4370 8016 1.070289 GTAGAGGCCGAGGGGTTATTG 59.930 57.143 0.00 0.00 34.97 1.90
4455 8101 4.582869 TCTCTGCATGTTAAGAGTGCATT 58.417 39.130 16.70 0.00 46.52 3.56
4472 8118 4.736793 GTGCATTCAACAGTCTCACAAAAG 59.263 41.667 0.00 0.00 0.00 2.27
4593 8241 7.801716 ACTACAATAAACTTTGAGCTTGTGA 57.198 32.000 0.00 0.00 0.00 3.58
4594 8242 7.639945 ACTACAATAAACTTTGAGCTTGTGAC 58.360 34.615 0.00 0.00 0.00 3.67
4758 8418 8.567285 AACTTATAACTCCTTCATTTCACTGG 57.433 34.615 0.00 0.00 0.00 4.00
4759 8419 7.690256 ACTTATAACTCCTTCATTTCACTGGT 58.310 34.615 0.00 0.00 0.00 4.00
4796 8457 1.760192 GATTGTGGCAGGAAGAGCAT 58.240 50.000 0.00 0.00 0.00 3.79
4798 8459 0.111061 TTGTGGCAGGAAGAGCATGT 59.889 50.000 0.00 0.00 0.00 3.21
4924 8585 0.916809 CCCGACCCCAAAATACCTCT 59.083 55.000 0.00 0.00 0.00 3.69
5001 8662 0.326264 GGAGGATGCACCACTGTCTT 59.674 55.000 7.86 0.00 42.04 3.01
5036 8697 3.697747 CCACACGGCGGAACCCTA 61.698 66.667 13.24 0.00 33.26 3.53
5081 8742 0.548510 GGCAAGCCCTACCTCTTGAT 59.451 55.000 0.00 0.00 41.50 2.57
5178 8852 2.414824 GCGTTTTCCGGTGCATATTTCA 60.415 45.455 0.00 0.00 36.94 2.69
5315 9027 3.500680 GGCTGGTTTTTCTCGTGATGTAA 59.499 43.478 0.00 0.00 0.00 2.41
5357 9069 0.466963 TGCATGAGCGATGGATGTCT 59.533 50.000 0.00 0.00 46.23 3.41
5358 9070 1.688197 TGCATGAGCGATGGATGTCTA 59.312 47.619 0.00 0.00 46.23 2.59
5402 9114 0.458543 AGCTTGCCGATGAGTGTACG 60.459 55.000 0.00 0.00 0.00 3.67
5403 9115 0.736325 GCTTGCCGATGAGTGTACGT 60.736 55.000 0.00 0.00 0.00 3.57
5404 9116 1.468565 GCTTGCCGATGAGTGTACGTA 60.469 52.381 0.00 0.00 0.00 3.57
5405 9117 2.451132 CTTGCCGATGAGTGTACGTAG 58.549 52.381 0.00 0.00 0.00 3.51
5525 9238 6.420604 ACAACAGTTTGTTTCTCAAAAGTGTG 59.579 34.615 8.83 6.66 43.89 3.82
5650 9363 3.304525 CGTTTTATACGGTTTTGCACCCA 60.305 43.478 0.00 0.00 46.42 4.51
5731 9448 2.293318 CCTGACAGGGTAGGCTGCA 61.293 63.158 14.26 0.00 0.00 4.41
5764 9489 2.660236 GTCCGACGACATGTGTTTAGTC 59.340 50.000 1.15 4.14 38.99 2.59
5770 9495 4.609947 ACGACATGTGTTTAGTCACGTAA 58.390 39.130 1.15 0.00 40.74 3.18
5799 9524 7.066887 ACGTTGCATGAGAACAATATGGATTTA 59.933 33.333 0.00 0.00 0.00 1.40
5856 9581 7.725251 ACAAATTTTATGTGTTGTCCAGTCAT 58.275 30.769 0.00 0.00 28.08 3.06
5879 9604 3.149196 GTTTGTGGATGTGTCTGGATGT 58.851 45.455 0.00 0.00 0.00 3.06
5933 9658 6.428771 GCCACTTGTGGTTGTAATTACTCTAA 59.571 38.462 19.47 0.27 0.00 2.10
6063 9788 5.544176 ACTCAAGTTCTCACTCCTTTCCATA 59.456 40.000 0.00 0.00 30.45 2.74
6123 9848 2.417719 ATAGATAGGGGAAAGCGGGT 57.582 50.000 0.00 0.00 0.00 5.28
6151 9876 5.974108 TCCCTTCTCGTTTTAGAATCGATT 58.026 37.500 11.20 11.20 35.04 3.34
6156 9881 8.129840 CCTTCTCGTTTTAGAATCGATTCTAGA 58.870 37.037 34.53 30.50 46.56 2.43
6240 9966 3.330998 GGGGCCTAGGAATTAATGCTAGT 59.669 47.826 14.75 0.00 45.81 2.57
6271 9997 1.014352 GCGTCGGCATTCTAAATGGT 58.986 50.000 0.00 0.00 39.62 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 174 6.827727 TGCTTTAGGGATAAGTATTCAGTCC 58.172 40.000 0.00 0.00 0.00 3.85
296 309 1.676529 CGTCTTTAGGATCGAGGAGCA 59.323 52.381 0.00 0.00 0.00 4.26
302 315 0.524816 GTGCGCGTCTTTAGGATCGA 60.525 55.000 8.43 0.00 0.00 3.59
696 1076 1.235281 GGAAACTGGGCTTGGACGTC 61.235 60.000 7.13 7.13 0.00 4.34
957 1352 3.820843 GGCGGGATTGGGGATGGT 61.821 66.667 0.00 0.00 0.00 3.55
1044 1440 1.388065 CCGAGCCGAGAGTTGGAGAT 61.388 60.000 0.00 0.00 0.00 2.75
1063 1459 3.694043 AAGAAAGAAGGACAGAGAGGC 57.306 47.619 0.00 0.00 0.00 4.70
1094 1490 2.358860 CAGAGCAGCAGCAGCAGT 60.359 61.111 12.92 0.00 45.49 4.40
1095 1491 2.878089 ATCCAGAGCAGCAGCAGCAG 62.878 60.000 12.92 0.00 45.49 4.24
1143 1680 3.967987 GACACAGATAATACCCCCAGACT 59.032 47.826 0.00 0.00 0.00 3.24
1186 1723 3.735037 GACGCCCCTCCGGATGAAC 62.735 68.421 3.57 0.00 0.00 3.18
1249 1786 0.834612 TAAGGTTATCAGCACCCGGG 59.165 55.000 22.25 22.25 34.44 5.73
1311 1852 0.306228 CGACGATCTCGCACTCATCT 59.694 55.000 0.00 0.00 44.43 2.90
1493 2053 1.475403 CTACCCTTCTCTGCTTCCGA 58.525 55.000 0.00 0.00 0.00 4.55
1570 2138 1.303236 CCGTGAAATCCCTGCACCA 60.303 57.895 0.00 0.00 0.00 4.17
1571 2139 1.303317 ACCGTGAAATCCCTGCACC 60.303 57.895 0.00 0.00 0.00 5.01
1572 2140 1.635663 CGACCGTGAAATCCCTGCAC 61.636 60.000 0.00 0.00 0.00 4.57
1580 2148 2.002586 CAAGCAGATCGACCGTGAAAT 58.997 47.619 0.00 0.00 0.00 2.17
1588 2156 0.247736 ACCACCTCAAGCAGATCGAC 59.752 55.000 0.00 0.00 0.00 4.20
1590 2158 0.742281 CCACCACCTCAAGCAGATCG 60.742 60.000 0.00 0.00 0.00 3.69
1591 2159 0.326264 ACCACCACCTCAAGCAGATC 59.674 55.000 0.00 0.00 0.00 2.75
1592 2160 0.037303 CACCACCACCTCAAGCAGAT 59.963 55.000 0.00 0.00 0.00 2.90
1593 2161 1.451504 CACCACCACCTCAAGCAGA 59.548 57.895 0.00 0.00 0.00 4.26
1594 2162 1.601759 CCACCACCACCTCAAGCAG 60.602 63.158 0.00 0.00 0.00 4.24
1595 2163 2.055689 CTCCACCACCACCTCAAGCA 62.056 60.000 0.00 0.00 0.00 3.91
1596 2164 1.302832 CTCCACCACCACCTCAAGC 60.303 63.158 0.00 0.00 0.00 4.01
1597 2165 1.127567 TCCTCCACCACCACCTCAAG 61.128 60.000 0.00 0.00 0.00 3.02
1598 2166 1.074090 TCCTCCACCACCACCTCAA 60.074 57.895 0.00 0.00 0.00 3.02
1599 2167 1.536418 CTCCTCCACCACCACCTCA 60.536 63.158 0.00 0.00 0.00 3.86
1600 2168 2.294078 CCTCCTCCACCACCACCTC 61.294 68.421 0.00 0.00 0.00 3.85
1601 2169 2.203998 CCTCCTCCACCACCACCT 60.204 66.667 0.00 0.00 0.00 4.00
1602 2170 1.842381 CTTCCTCCTCCACCACCACC 61.842 65.000 0.00 0.00 0.00 4.61
1603 2171 1.679898 CTTCCTCCTCCACCACCAC 59.320 63.158 0.00 0.00 0.00 4.16
1604 2172 2.224159 GCTTCCTCCTCCACCACCA 61.224 63.158 0.00 0.00 0.00 4.17
1605 2173 2.190488 CTGCTTCCTCCTCCACCACC 62.190 65.000 0.00 0.00 0.00 4.61
1606 2174 1.298014 CTGCTTCCTCCTCCACCAC 59.702 63.158 0.00 0.00 0.00 4.16
1607 2175 2.596851 GCTGCTTCCTCCTCCACCA 61.597 63.158 0.00 0.00 0.00 4.17
1608 2176 2.270527 GCTGCTTCCTCCTCCACC 59.729 66.667 0.00 0.00 0.00 4.61
1609 2177 1.078567 CTGCTGCTTCCTCCTCCAC 60.079 63.158 0.00 0.00 0.00 4.02
1610 2178 2.964310 GCTGCTGCTTCCTCCTCCA 61.964 63.158 8.53 0.00 36.03 3.86
1611 2179 2.124778 GCTGCTGCTTCCTCCTCC 60.125 66.667 8.53 0.00 36.03 4.30
1612 2180 2.124778 GGCTGCTGCTTCCTCCTC 60.125 66.667 15.64 0.00 39.59 3.71
1613 2181 4.093291 CGGCTGCTGCTTCCTCCT 62.093 66.667 15.64 0.00 39.59 3.69
1614 2182 4.400961 ACGGCTGCTGCTTCCTCC 62.401 66.667 15.64 0.00 39.59 4.30
1615 2183 3.123620 CACGGCTGCTGCTTCCTC 61.124 66.667 15.64 0.00 39.59 3.71
1616 2184 4.711949 CCACGGCTGCTGCTTCCT 62.712 66.667 15.64 0.00 39.59 3.36
1617 2185 3.605749 TACCACGGCTGCTGCTTCC 62.606 63.158 15.64 0.74 39.59 3.46
1618 2186 2.047274 TACCACGGCTGCTGCTTC 60.047 61.111 15.64 0.00 39.59 3.86
1619 2187 2.046892 CTACCACGGCTGCTGCTT 60.047 61.111 15.64 0.00 39.59 3.91
1620 2188 4.767255 GCTACCACGGCTGCTGCT 62.767 66.667 15.64 0.00 39.59 4.24
1622 2190 2.816958 CTGCTACCACGGCTGCTG 60.817 66.667 6.98 6.98 0.00 4.41
1623 2191 4.767255 GCTGCTACCACGGCTGCT 62.767 66.667 0.00 0.00 46.20 4.24
1627 2195 4.752879 TTCCGCTGCTACCACGGC 62.753 66.667 0.00 0.00 46.49 5.68
1629 2197 2.048597 TGTTCCGCTGCTACCACG 60.049 61.111 0.00 0.00 0.00 4.94
1630 2198 0.882927 TTGTGTTCCGCTGCTACCAC 60.883 55.000 0.00 0.15 0.00 4.16
1631 2199 0.602638 CTTGTGTTCCGCTGCTACCA 60.603 55.000 0.00 0.00 0.00 3.25
1632 2200 0.320421 TCTTGTGTTCCGCTGCTACC 60.320 55.000 0.00 0.00 0.00 3.18
1633 2201 1.071605 CTCTTGTGTTCCGCTGCTAC 58.928 55.000 0.00 0.00 0.00 3.58
1634 2202 0.679505 ACTCTTGTGTTCCGCTGCTA 59.320 50.000 0.00 0.00 0.00 3.49
1635 2203 0.179045 AACTCTTGTGTTCCGCTGCT 60.179 50.000 0.00 0.00 0.00 4.24
1636 2204 0.235926 GAACTCTTGTGTTCCGCTGC 59.764 55.000 4.73 0.00 40.10 5.25
1637 2205 1.528586 CAGAACTCTTGTGTTCCGCTG 59.471 52.381 10.67 0.00 45.25 5.18
1638 2206 1.139058 ACAGAACTCTTGTGTTCCGCT 59.861 47.619 10.67 0.00 45.25 5.52
1639 2207 1.583054 ACAGAACTCTTGTGTTCCGC 58.417 50.000 10.67 0.00 45.25 5.54
1644 2212 2.483188 GGACGGAACAGAACTCTTGTGT 60.483 50.000 0.00 0.00 39.02 3.72
1645 2213 2.135933 GGACGGAACAGAACTCTTGTG 58.864 52.381 0.00 0.00 0.00 3.33
1646 2214 1.070289 GGGACGGAACAGAACTCTTGT 59.930 52.381 0.00 0.00 0.00 3.16
1647 2215 1.797025 GGGACGGAACAGAACTCTTG 58.203 55.000 0.00 0.00 0.00 3.02
1662 2230 0.394625 AGTCTCCACTAGAGCGGGAC 60.395 60.000 0.00 0.00 42.90 4.46
1663 2231 0.394488 CAGTCTCCACTAGAGCGGGA 60.394 60.000 0.00 0.00 42.90 5.14
1664 2232 0.394488 TCAGTCTCCACTAGAGCGGG 60.394 60.000 0.00 0.00 42.90 6.13
1665 2233 1.606668 GATCAGTCTCCACTAGAGCGG 59.393 57.143 0.00 0.00 42.90 5.52
1666 2234 2.032799 GTGATCAGTCTCCACTAGAGCG 59.967 54.545 0.00 0.00 42.90 5.03
1667 2235 2.032799 CGTGATCAGTCTCCACTAGAGC 59.967 54.545 0.00 0.00 42.90 4.09
1668 2236 3.536570 TCGTGATCAGTCTCCACTAGAG 58.463 50.000 0.00 0.00 44.75 2.43
1669 2237 3.629142 TCGTGATCAGTCTCCACTAGA 57.371 47.619 0.00 0.00 0.00 2.43
1670 2238 4.024133 CAGATCGTGATCAGTCTCCACTAG 60.024 50.000 12.10 0.00 40.22 2.57
1671 2239 3.879892 CAGATCGTGATCAGTCTCCACTA 59.120 47.826 12.10 0.00 40.22 2.74
1672 2240 2.687425 CAGATCGTGATCAGTCTCCACT 59.313 50.000 12.10 0.00 40.22 4.00
1673 2241 2.797792 GCAGATCGTGATCAGTCTCCAC 60.798 54.545 12.10 0.00 40.22 4.02
1674 2242 1.406898 GCAGATCGTGATCAGTCTCCA 59.593 52.381 12.10 0.00 40.22 3.86
1675 2243 1.680735 AGCAGATCGTGATCAGTCTCC 59.319 52.381 12.10 0.00 40.22 3.71
1676 2244 3.114809 CAAGCAGATCGTGATCAGTCTC 58.885 50.000 12.10 0.00 40.22 3.36
1677 2245 2.757314 TCAAGCAGATCGTGATCAGTCT 59.243 45.455 12.10 0.00 40.22 3.24
1678 2246 3.114809 CTCAAGCAGATCGTGATCAGTC 58.885 50.000 12.10 0.00 40.22 3.51
1679 2247 2.159128 CCTCAAGCAGATCGTGATCAGT 60.159 50.000 12.10 0.00 40.22 3.41
1680 2248 2.159128 ACCTCAAGCAGATCGTGATCAG 60.159 50.000 12.10 5.36 40.22 2.90
1681 2249 1.827344 ACCTCAAGCAGATCGTGATCA 59.173 47.619 12.10 0.00 40.22 2.92
1682 2250 2.200067 CACCTCAAGCAGATCGTGATC 58.800 52.381 1.52 1.52 38.09 2.92
1683 2251 1.134580 CCACCTCAAGCAGATCGTGAT 60.135 52.381 7.62 0.00 32.89 3.06
1684 2252 0.247460 CCACCTCAAGCAGATCGTGA 59.753 55.000 7.62 0.00 31.40 4.35
1685 2253 0.036952 ACCACCTCAAGCAGATCGTG 60.037 55.000 0.00 0.00 0.00 4.35
1686 2254 0.247736 GACCACCTCAAGCAGATCGT 59.752 55.000 0.00 0.00 0.00 3.73
1705 2273 1.216710 GTCTGCTTCCTCCTCCACG 59.783 63.158 0.00 0.00 0.00 4.94
1728 2347 2.614057 ACAGAGCAAAACGGAACAGAAG 59.386 45.455 0.00 0.00 0.00 2.85
1796 2460 0.392998 CACGGCCCAGAGCTTGTAAT 60.393 55.000 0.00 0.00 43.05 1.89
1836 2506 2.168521 TCTGCAATTTCTCTACCCCTCG 59.831 50.000 0.00 0.00 0.00 4.63
1923 2595 3.188460 CCCAACAGTTAACATGTTCGAGG 59.812 47.826 15.85 14.40 38.80 4.63
2398 3370 2.769095 GCCCCCATATTTAAAGCCAACA 59.231 45.455 0.00 0.00 0.00 3.33
2879 4714 1.279271 AGGGAAACGCTAATGCTCTGT 59.721 47.619 0.00 0.00 36.97 3.41
3230 5189 7.448748 ACCGAGAATAAAAGTAAATGCAACT 57.551 32.000 0.00 0.00 0.00 3.16
3325 6913 3.376234 CCACTGTGATAAGACCTGCAATG 59.624 47.826 9.86 0.00 0.00 2.82
3466 7054 2.117865 AGATTCCTTCAGCCTCCTCTG 58.882 52.381 0.00 0.00 35.46 3.35
3648 7240 7.063780 GCATTTGATACTTTGTGGAAGAAATGG 59.936 37.037 0.00 0.00 36.88 3.16
3696 7288 1.726791 CTGTTGCTAATCTTGCGACGT 59.273 47.619 0.00 0.00 45.18 4.34
3986 7588 7.880160 AATGGATCGGATTCTTCATTAACAA 57.120 32.000 0.00 0.00 0.00 2.83
4093 7695 7.890127 TGGTCAATGAAGATTTACCTGATTCTT 59.110 33.333 0.00 0.00 36.94 2.52
4122 7724 6.311200 GCTTTCACAAAGTTGATGACAGTTTT 59.689 34.615 0.00 0.00 40.64 2.43
4360 8006 6.816616 TTTTTCAAAAGGACAATAACCCCT 57.183 33.333 0.00 0.00 0.00 4.79
4455 8101 6.816136 TCTGATACTTTTGTGAGACTGTTGA 58.184 36.000 0.00 0.00 0.00 3.18
4593 8241 1.075536 GGGTTCATGGAAAGACTGGGT 59.924 52.381 0.00 0.00 0.00 4.51
4594 8242 1.075374 TGGGTTCATGGAAAGACTGGG 59.925 52.381 0.00 0.00 0.00 4.45
4706 8365 3.380004 CAGTTTACAAGGTCACCTGCAAA 59.620 43.478 0.00 0.00 32.13 3.68
4711 8371 7.742767 AGTTATAACAGTTTACAAGGTCACCT 58.257 34.615 17.65 0.00 33.87 4.00
4758 8418 2.198406 TCGCAGCGGTAACATGAATAC 58.802 47.619 16.42 2.16 0.00 1.89
4759 8419 2.588027 TCGCAGCGGTAACATGAATA 57.412 45.000 16.42 0.00 0.00 1.75
4796 8457 2.856628 CGGGCCAGATAGCGCTACA 61.857 63.158 21.49 0.00 43.11 2.74
4798 8459 3.303135 CCGGGCCAGATAGCGCTA 61.303 66.667 21.30 21.30 43.11 4.26
4832 8493 3.948719 GAGTCCGGGGTTGCACCA 61.949 66.667 0.00 0.00 41.02 4.17
5001 8662 2.046023 CAGGCGTTCATCCAGGCA 60.046 61.111 0.00 0.00 0.00 4.75
5036 8697 4.753662 TCAGGGTAGGCGGCGTCT 62.754 66.667 21.20 21.20 0.00 4.18
5109 8770 2.100252 AGATATTCGAAGGCGTTCCGAA 59.900 45.455 20.31 20.31 38.98 4.30
5121 8782 3.243636 GCACTTACGGGGAAGATATTCGA 60.244 47.826 0.00 0.00 0.00 3.71
5178 8852 5.954153 AGGAGATGAGTCATGAGAATTGT 57.046 39.130 11.20 0.00 0.00 2.71
5315 9027 7.761704 TGCACAAAAATACAGTACAAAACATGT 59.238 29.630 0.00 0.00 46.36 3.21
5333 9045 1.532523 TCCATCGCTCATGCACAAAA 58.467 45.000 0.00 0.00 39.64 2.44
5335 9047 1.018910 CATCCATCGCTCATGCACAA 58.981 50.000 0.00 0.00 39.64 3.33
5357 9069 9.199645 TCCAGGATCATATGCAAAATTTTCTTA 57.800 29.630 0.00 0.57 0.00 2.10
5358 9070 8.081517 TCCAGGATCATATGCAAAATTTTCTT 57.918 30.769 0.00 0.00 0.00 2.52
5402 9114 6.369065 ACAAACTGTAAACATAGCTGAGCTAC 59.631 38.462 17.53 6.06 44.24 3.58
5403 9115 6.368791 CACAAACTGTAAACATAGCTGAGCTA 59.631 38.462 17.49 17.49 45.55 3.32
5404 9116 5.180117 CACAAACTGTAAACATAGCTGAGCT 59.820 40.000 13.25 13.25 43.41 4.09
5405 9117 5.385617 CACAAACTGTAAACATAGCTGAGC 58.614 41.667 0.00 0.00 0.00 4.26
5421 9133 5.562298 ATTGTCTGGTACTACCACAAACT 57.438 39.130 12.84 0.00 44.79 2.66
5513 9226 7.552687 AGTGATAAGTTTCACACACTTTTGAGA 59.447 33.333 15.75 0.00 46.81 3.27
5668 9384 0.846015 ATATGCTACAAGGGCAGCCA 59.154 50.000 15.19 0.00 43.15 4.75
5708 9424 1.992277 CCTACCCTGTCAGGCTGCT 60.992 63.158 13.99 0.00 32.73 4.24
5731 9448 5.075858 TGTCGTCGGACTACCAAAAATAT 57.924 39.130 9.93 0.00 43.79 1.28
5770 9495 5.294306 CCATATTGTTCTCATGCAACGTACT 59.706 40.000 0.00 0.00 0.00 2.73
5799 9524 3.761897 TGGATCATCAAACCGAAACCTT 58.238 40.909 0.00 0.00 0.00 3.50
5856 9581 3.289407 TCCAGACACATCCACAAACAA 57.711 42.857 0.00 0.00 0.00 2.83
5886 9611 1.867363 ACCGAGGGCTCTAAATGTCT 58.133 50.000 0.00 0.00 0.00 3.41
5888 9613 2.711542 CAAACCGAGGGCTCTAAATGT 58.288 47.619 0.00 0.00 0.00 2.71
5933 9658 5.887598 TGTGCTATATGAAAAATGCTCTGGT 59.112 36.000 0.00 0.00 0.00 4.00
6063 9788 4.504858 GGTTCTCTACGTTGATCCACAAT 58.495 43.478 0.00 0.00 40.76 2.71
6078 9803 1.629043 TCTGCGTGTAAGGGTTCTCT 58.371 50.000 0.00 0.00 0.00 3.10
6123 9848 3.513517 TCTAAAACGAGAAGGGAAGGGA 58.486 45.455 0.00 0.00 0.00 4.20
6151 9876 9.355215 GAGTTTGAATCGAGTAAATTGTCTAGA 57.645 33.333 0.00 0.00 0.00 2.43
6219 9944 4.327680 CACTAGCATTAATTCCTAGGCCC 58.672 47.826 17.76 0.00 34.32 5.80
6240 9966 4.728102 CGACGCTTACACCGGGCA 62.728 66.667 6.32 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.