Multiple sequence alignment - TraesCS2A01G324800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G324800 chr2A 100.000 4427 0 0 1 4427 554744892 554740466 0.000000e+00 8176.0
1 TraesCS2A01G324800 chr2B 93.853 3807 140 33 514 4280 510585085 510588837 0.000000e+00 5648.0
2 TraesCS2A01G324800 chr2B 94.805 77 4 0 4351 4427 510588826 510588902 2.160000e-23 121.0
3 TraesCS2A01G324800 chr2D 93.209 3873 142 42 595 4427 431673900 431677691 0.000000e+00 5583.0
4 TraesCS2A01G324800 chrUn 90.476 84 8 0 2 85 41054628 41054711 1.300000e-20 111.0
5 TraesCS2A01G324800 chr6A 90.476 84 6 2 2 85 13056584 13056665 4.680000e-20 110.0
6 TraesCS2A01G324800 chr5B 90.361 83 6 1 2 84 351487100 351487020 1.680000e-19 108.0
7 TraesCS2A01G324800 chr5B 91.892 74 6 0 1 74 597082736 597082809 2.180000e-18 104.0
8 TraesCS2A01G324800 chr6B 88.636 88 8 2 1 88 12111856 12111941 6.060000e-19 106.0
9 TraesCS2A01G324800 chr6B 93.056 72 4 1 2 73 683824939 683824869 2.180000e-18 104.0
10 TraesCS2A01G324800 chr6B 90.566 53 4 1 4286 4338 538369754 538369703 7.950000e-08 69.4
11 TraesCS2A01G324800 chr3B 91.250 80 4 3 5 84 201905118 201905042 6.060000e-19 106.0
12 TraesCS2A01G324800 chr3D 90.123 81 5 3 4 84 121528863 121528786 7.830000e-18 102.0
13 TraesCS2A01G324800 chr5D 87.952 83 8 1 2 84 297227815 297227895 3.640000e-16 97.1
14 TraesCS2A01G324800 chr4A 92.308 52 3 1 4286 4337 97531583 97531533 6.140000e-09 73.1
15 TraesCS2A01G324800 chr4D 92.157 51 3 1 4288 4338 367719897 367719946 2.210000e-08 71.3
16 TraesCS2A01G324800 chr6D 88.889 54 5 1 4285 4338 420893703 420893651 1.030000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G324800 chr2A 554740466 554744892 4426 True 8176.0 8176 100.000 1 4427 1 chr2A.!!$R1 4426
1 TraesCS2A01G324800 chr2B 510585085 510588902 3817 False 2884.5 5648 94.329 514 4427 2 chr2B.!!$F1 3913
2 TraesCS2A01G324800 chr2D 431673900 431677691 3791 False 5583.0 5583 93.209 595 4427 1 chr2D.!!$F1 3832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.026803 GCGCTCGATGTGAAATGTCC 59.973 55.0 0.00 0.00 0.00 4.02 F
396 397 0.032678 AAGGCTGGATCGATAGTGCG 59.967 55.0 0.00 0.00 37.40 5.34 F
929 930 0.175989 ACGAAGCCAACCTAGCTAGC 59.824 55.0 15.74 6.62 40.49 3.42 F
930 931 0.461961 CGAAGCCAACCTAGCTAGCT 59.538 55.0 23.12 23.12 40.49 3.32 F
2276 2327 0.900182 TGAGGGCTGACACTGACGAT 60.900 55.0 0.00 0.00 0.00 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2166 0.390472 GAGCACACGAAGGAGGAAGG 60.390 60.000 0.00 0.0 0.00 3.46 R
2263 2299 0.387239 TCGTGCATCGTCAGTGTCAG 60.387 55.000 8.22 0.0 40.80 3.51 R
2276 2327 1.005512 ATGTACCTGCGTTCGTGCA 60.006 52.632 0.00 0.0 43.95 4.57 R
2352 2412 2.035442 GTTGTCGAAGCTGAGGCCC 61.035 63.158 0.00 0.0 39.73 5.80 R
3723 3784 0.247379 GTCGTGTTTTCGTGTGCGTT 60.247 50.000 0.00 0.0 39.49 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.597510 GGCCACCCCATATTCGCC 60.598 66.667 0.00 0.00 0.00 5.54
24 25 2.597510 GCCACCCCATATTCGCCC 60.598 66.667 0.00 0.00 0.00 6.13
25 26 2.115266 CCACCCCATATTCGCCCC 59.885 66.667 0.00 0.00 0.00 5.80
26 27 2.762554 CCACCCCATATTCGCCCCA 61.763 63.158 0.00 0.00 0.00 4.96
27 28 1.228245 CACCCCATATTCGCCCCAG 60.228 63.158 0.00 0.00 0.00 4.45
28 29 1.385347 ACCCCATATTCGCCCCAGA 60.385 57.895 0.00 0.00 0.00 3.86
29 30 0.772124 ACCCCATATTCGCCCCAGAT 60.772 55.000 0.00 0.00 0.00 2.90
30 31 0.405585 CCCCATATTCGCCCCAGATT 59.594 55.000 0.00 0.00 0.00 2.40
31 32 1.203050 CCCCATATTCGCCCCAGATTT 60.203 52.381 0.00 0.00 0.00 2.17
32 33 1.888512 CCCATATTCGCCCCAGATTTG 59.111 52.381 0.00 0.00 0.00 2.32
33 34 1.888512 CCATATTCGCCCCAGATTTGG 59.111 52.381 0.00 0.00 44.60 3.28
46 47 2.889045 CAGATTTGGGCTGGATATGTGG 59.111 50.000 0.00 0.00 0.00 4.17
47 48 2.158415 AGATTTGGGCTGGATATGTGGG 60.158 50.000 0.00 0.00 0.00 4.61
48 49 0.261402 TTTGGGCTGGATATGTGGGG 59.739 55.000 0.00 0.00 0.00 4.96
49 50 0.923729 TTGGGCTGGATATGTGGGGT 60.924 55.000 0.00 0.00 0.00 4.95
50 51 1.151450 GGGCTGGATATGTGGGGTG 59.849 63.158 0.00 0.00 0.00 4.61
51 52 1.529244 GGCTGGATATGTGGGGTGC 60.529 63.158 0.00 0.00 0.00 5.01
52 53 1.529244 GCTGGATATGTGGGGTGCC 60.529 63.158 0.00 0.00 0.00 5.01
53 54 1.227943 CTGGATATGTGGGGTGCCG 60.228 63.158 0.00 0.00 0.00 5.69
54 55 2.113139 GGATATGTGGGGTGCCGG 59.887 66.667 0.00 0.00 0.00 6.13
55 56 2.752807 GGATATGTGGGGTGCCGGT 61.753 63.158 1.90 0.00 0.00 5.28
56 57 1.227853 GATATGTGGGGTGCCGGTC 60.228 63.158 1.90 0.00 0.00 4.79
57 58 1.978455 GATATGTGGGGTGCCGGTCA 61.978 60.000 1.90 0.00 0.00 4.02
58 59 1.983119 ATATGTGGGGTGCCGGTCAG 61.983 60.000 1.90 0.00 0.00 3.51
70 71 2.983592 GGTCAGCCCGGGTGTTTG 60.984 66.667 24.63 15.52 32.43 2.93
71 72 2.112297 GTCAGCCCGGGTGTTTGA 59.888 61.111 24.63 17.59 32.43 2.69
72 73 1.966451 GTCAGCCCGGGTGTTTGAG 60.966 63.158 24.63 4.48 32.43 3.02
73 74 2.672996 CAGCCCGGGTGTTTGAGG 60.673 66.667 24.63 0.00 0.00 3.86
74 75 4.660938 AGCCCGGGTGTTTGAGGC 62.661 66.667 24.63 3.52 44.20 4.70
76 77 4.636435 CCCGGGTGTTTGAGGCGT 62.636 66.667 14.18 0.00 0.00 5.68
77 78 3.047877 CCGGGTGTTTGAGGCGTC 61.048 66.667 0.00 0.00 0.00 5.19
78 79 3.047877 CGGGTGTTTGAGGCGTCC 61.048 66.667 3.56 0.00 0.00 4.79
79 80 3.047877 GGGTGTTTGAGGCGTCCG 61.048 66.667 3.56 0.00 0.00 4.79
80 81 2.280592 GGTGTTTGAGGCGTCCGT 60.281 61.111 3.56 0.00 0.00 4.69
81 82 1.890510 GGTGTTTGAGGCGTCCGTT 60.891 57.895 3.56 0.00 0.00 4.44
82 83 1.441732 GGTGTTTGAGGCGTCCGTTT 61.442 55.000 3.56 0.00 0.00 3.60
83 84 0.316689 GTGTTTGAGGCGTCCGTTTG 60.317 55.000 3.56 0.00 0.00 2.93
84 85 1.281656 GTTTGAGGCGTCCGTTTGG 59.718 57.895 3.56 0.00 0.00 3.28
85 86 1.146485 TTTGAGGCGTCCGTTTGGA 59.854 52.632 3.56 0.00 43.88 3.53
97 98 4.467198 TCCGTTTGGATCCTTCTCTTAC 57.533 45.455 14.23 0.02 40.17 2.34
98 99 3.197116 TCCGTTTGGATCCTTCTCTTACC 59.803 47.826 14.23 0.00 40.17 2.85
99 100 3.187700 CGTTTGGATCCTTCTCTTACCG 58.812 50.000 14.23 0.00 0.00 4.02
100 101 3.532542 GTTTGGATCCTTCTCTTACCGG 58.467 50.000 14.23 0.00 0.00 5.28
101 102 2.544844 TGGATCCTTCTCTTACCGGT 57.455 50.000 13.98 13.98 0.00 5.28
102 103 2.385803 TGGATCCTTCTCTTACCGGTC 58.614 52.381 12.40 0.00 0.00 4.79
103 104 2.291996 TGGATCCTTCTCTTACCGGTCA 60.292 50.000 12.40 0.00 0.00 4.02
104 105 2.101082 GGATCCTTCTCTTACCGGTCAC 59.899 54.545 12.40 0.00 0.00 3.67
105 106 2.599408 TCCTTCTCTTACCGGTCACT 57.401 50.000 12.40 0.00 0.00 3.41
106 107 2.168496 TCCTTCTCTTACCGGTCACTG 58.832 52.381 12.40 0.00 0.00 3.66
107 108 2.168496 CCTTCTCTTACCGGTCACTGA 58.832 52.381 12.40 2.87 0.00 3.41
108 109 2.094649 CCTTCTCTTACCGGTCACTGAC 60.095 54.545 12.40 0.00 0.00 3.51
117 118 4.736896 GTCACTGACCGGGCCGTC 62.737 72.222 26.32 21.30 0.00 4.79
128 129 4.148825 GGCCGTCCACTCGAGCAT 62.149 66.667 13.61 0.00 0.00 3.79
129 130 2.125512 GCCGTCCACTCGAGCATT 60.126 61.111 13.61 0.00 0.00 3.56
130 131 1.741770 GCCGTCCACTCGAGCATTT 60.742 57.895 13.61 0.00 0.00 2.32
131 132 1.970917 GCCGTCCACTCGAGCATTTG 61.971 60.000 13.61 2.74 0.00 2.32
132 133 0.389817 CCGTCCACTCGAGCATTTGA 60.390 55.000 13.61 0.00 0.00 2.69
133 134 1.428448 CGTCCACTCGAGCATTTGAA 58.572 50.000 13.61 0.00 0.00 2.69
134 135 1.391485 CGTCCACTCGAGCATTTGAAG 59.609 52.381 13.61 0.87 0.00 3.02
135 136 2.688507 GTCCACTCGAGCATTTGAAGA 58.311 47.619 13.61 0.00 0.00 2.87
136 137 2.413453 GTCCACTCGAGCATTTGAAGAC 59.587 50.000 13.61 3.67 0.00 3.01
137 138 2.300152 TCCACTCGAGCATTTGAAGACT 59.700 45.455 13.61 0.00 0.00 3.24
138 139 2.414481 CCACTCGAGCATTTGAAGACTG 59.586 50.000 13.61 0.00 0.00 3.51
139 140 3.062763 CACTCGAGCATTTGAAGACTGT 58.937 45.455 13.61 0.00 0.00 3.55
140 141 3.496130 CACTCGAGCATTTGAAGACTGTT 59.504 43.478 13.61 0.00 0.00 3.16
141 142 4.024556 CACTCGAGCATTTGAAGACTGTTT 60.025 41.667 13.61 0.00 0.00 2.83
142 143 4.024556 ACTCGAGCATTTGAAGACTGTTTG 60.025 41.667 13.61 0.00 0.00 2.93
143 144 4.126437 TCGAGCATTTGAAGACTGTTTGA 58.874 39.130 0.00 0.00 0.00 2.69
144 145 4.574421 TCGAGCATTTGAAGACTGTTTGAA 59.426 37.500 0.00 0.00 0.00 2.69
145 146 4.908156 CGAGCATTTGAAGACTGTTTGAAG 59.092 41.667 0.00 0.00 0.00 3.02
146 147 4.614946 AGCATTTGAAGACTGTTTGAAGC 58.385 39.130 0.00 0.00 0.00 3.86
147 148 3.423206 GCATTTGAAGACTGTTTGAAGCG 59.577 43.478 0.00 0.00 0.00 4.68
148 149 2.755836 TTGAAGACTGTTTGAAGCGC 57.244 45.000 0.00 0.00 0.00 5.92
149 150 1.953559 TGAAGACTGTTTGAAGCGCT 58.046 45.000 2.64 2.64 0.00 5.92
150 151 1.867233 TGAAGACTGTTTGAAGCGCTC 59.133 47.619 12.06 4.99 0.00 5.03
151 152 0.861837 AAGACTGTTTGAAGCGCTCG 59.138 50.000 12.06 0.00 0.00 5.03
152 153 0.032130 AGACTGTTTGAAGCGCTCGA 59.968 50.000 12.06 0.91 0.00 4.04
153 154 1.071605 GACTGTTTGAAGCGCTCGAT 58.928 50.000 12.06 0.00 0.00 3.59
154 155 0.792640 ACTGTTTGAAGCGCTCGATG 59.207 50.000 12.06 0.00 0.00 3.84
155 156 0.792640 CTGTTTGAAGCGCTCGATGT 59.207 50.000 12.06 0.00 0.00 3.06
156 157 0.512518 TGTTTGAAGCGCTCGATGTG 59.487 50.000 12.06 0.00 0.00 3.21
157 158 0.790207 GTTTGAAGCGCTCGATGTGA 59.210 50.000 12.06 0.00 0.00 3.58
158 159 1.194547 GTTTGAAGCGCTCGATGTGAA 59.805 47.619 12.06 0.00 0.00 3.18
159 160 1.507562 TTGAAGCGCTCGATGTGAAA 58.492 45.000 12.06 0.00 0.00 2.69
160 161 1.725641 TGAAGCGCTCGATGTGAAAT 58.274 45.000 12.06 0.00 0.00 2.17
161 162 1.394572 TGAAGCGCTCGATGTGAAATG 59.605 47.619 12.06 0.00 0.00 2.32
162 163 1.394917 GAAGCGCTCGATGTGAAATGT 59.605 47.619 12.06 0.00 0.00 2.71
163 164 1.002366 AGCGCTCGATGTGAAATGTC 58.998 50.000 2.64 0.00 0.00 3.06
164 165 0.026803 GCGCTCGATGTGAAATGTCC 59.973 55.000 0.00 0.00 0.00 4.02
165 166 1.645034 CGCTCGATGTGAAATGTCCT 58.355 50.000 0.00 0.00 0.00 3.85
166 167 1.590238 CGCTCGATGTGAAATGTCCTC 59.410 52.381 0.00 0.00 0.00 3.71
167 168 2.621338 GCTCGATGTGAAATGTCCTCA 58.379 47.619 0.00 0.00 0.00 3.86
168 169 3.002791 GCTCGATGTGAAATGTCCTCAA 58.997 45.455 0.00 0.00 0.00 3.02
169 170 3.181516 GCTCGATGTGAAATGTCCTCAAC 60.182 47.826 0.00 0.00 0.00 3.18
170 171 2.993220 TCGATGTGAAATGTCCTCAACG 59.007 45.455 2.89 2.89 0.00 4.10
171 172 2.736721 CGATGTGAAATGTCCTCAACGT 59.263 45.455 0.00 0.00 0.00 3.99
172 173 3.186409 CGATGTGAAATGTCCTCAACGTT 59.814 43.478 0.00 0.00 38.80 3.99
174 175 4.974368 TGTGAAATGTCCTCAACGTTTT 57.026 36.364 0.00 0.00 45.11 2.43
175 176 5.317733 TGTGAAATGTCCTCAACGTTTTT 57.682 34.783 0.00 0.00 45.11 1.94
176 177 5.336744 TGTGAAATGTCCTCAACGTTTTTC 58.663 37.500 0.00 5.25 45.11 2.29
177 178 5.106118 TGTGAAATGTCCTCAACGTTTTTCA 60.106 36.000 14.74 14.74 45.11 2.69
178 179 5.229260 GTGAAATGTCCTCAACGTTTTTCAC 59.771 40.000 24.88 24.88 45.11 3.18
191 192 5.525536 CGTTTTTCACGTGATGTTCTTTC 57.474 39.130 20.80 4.36 44.49 2.62
192 193 5.025190 CGTTTTTCACGTGATGTTCTTTCA 58.975 37.500 20.80 0.00 44.49 2.69
193 194 5.169561 CGTTTTTCACGTGATGTTCTTTCAG 59.830 40.000 20.80 0.19 44.49 3.02
194 195 6.255215 GTTTTTCACGTGATGTTCTTTCAGA 58.745 36.000 20.80 0.00 0.00 3.27
195 196 6.429791 TTTTCACGTGATGTTCTTTCAGAA 57.570 33.333 20.80 2.76 0.00 3.02
196 197 6.429791 TTTCACGTGATGTTCTTTCAGAAA 57.570 33.333 20.80 2.54 35.75 2.52
197 198 5.403897 TCACGTGATGTTCTTTCAGAAAC 57.596 39.130 15.76 0.00 35.75 2.78
198 199 4.873259 TCACGTGATGTTCTTTCAGAAACA 59.127 37.500 15.76 0.00 35.75 2.83
199 200 5.527214 TCACGTGATGTTCTTTCAGAAACAT 59.473 36.000 15.76 0.65 35.75 2.71
200 201 5.848036 CACGTGATGTTCTTTCAGAAACATC 59.152 40.000 10.90 17.14 39.87 3.06
201 202 5.075448 CGTGATGTTCTTTCAGAAACATCG 58.925 41.667 18.18 8.54 40.93 3.84
202 203 5.107491 CGTGATGTTCTTTCAGAAACATCGA 60.107 40.000 18.18 0.00 40.93 3.59
203 204 6.401474 CGTGATGTTCTTTCAGAAACATCGAT 60.401 38.462 18.18 0.00 40.93 3.59
204 205 6.958193 GTGATGTTCTTTCAGAAACATCGATC 59.042 38.462 18.18 10.64 40.93 3.69
205 206 6.650390 TGATGTTCTTTCAGAAACATCGATCA 59.350 34.615 18.18 8.25 40.93 2.92
206 207 7.335171 TGATGTTCTTTCAGAAACATCGATCAT 59.665 33.333 18.18 11.45 40.93 2.45
207 208 8.722480 ATGTTCTTTCAGAAACATCGATCATA 57.278 30.769 0.00 0.00 35.75 2.15
208 209 8.546597 TGTTCTTTCAGAAACATCGATCATAA 57.453 30.769 0.00 0.00 35.75 1.90
209 210 8.443160 TGTTCTTTCAGAAACATCGATCATAAC 58.557 33.333 0.00 0.00 35.75 1.89
210 211 8.443160 GTTCTTTCAGAAACATCGATCATAACA 58.557 33.333 0.00 0.00 35.75 2.41
211 212 8.722480 TCTTTCAGAAACATCGATCATAACAT 57.278 30.769 0.00 0.00 0.00 2.71
212 213 9.816354 TCTTTCAGAAACATCGATCATAACATA 57.184 29.630 0.00 0.00 0.00 2.29
214 215 8.593492 TTCAGAAACATCGATCATAACATAGG 57.407 34.615 0.00 0.00 0.00 2.57
215 216 6.646653 TCAGAAACATCGATCATAACATAGGC 59.353 38.462 0.00 0.00 0.00 3.93
216 217 6.424812 CAGAAACATCGATCATAACATAGGCA 59.575 38.462 0.00 0.00 0.00 4.75
217 218 6.425114 AGAAACATCGATCATAACATAGGCAC 59.575 38.462 0.00 0.00 0.00 5.01
218 219 5.213891 ACATCGATCATAACATAGGCACA 57.786 39.130 0.00 0.00 0.00 4.57
219 220 4.991056 ACATCGATCATAACATAGGCACAC 59.009 41.667 0.00 0.00 0.00 3.82
220 221 4.664150 TCGATCATAACATAGGCACACA 57.336 40.909 0.00 0.00 0.00 3.72
221 222 5.213891 TCGATCATAACATAGGCACACAT 57.786 39.130 0.00 0.00 0.00 3.21
222 223 6.339587 TCGATCATAACATAGGCACACATA 57.660 37.500 0.00 0.00 0.00 2.29
223 224 6.754193 TCGATCATAACATAGGCACACATAA 58.246 36.000 0.00 0.00 0.00 1.90
224 225 7.386059 TCGATCATAACATAGGCACACATAAT 58.614 34.615 0.00 0.00 0.00 1.28
225 226 7.331687 TCGATCATAACATAGGCACACATAATG 59.668 37.037 0.00 0.00 0.00 1.90
226 227 7.413328 CGATCATAACATAGGCACACATAATGG 60.413 40.741 0.00 0.00 0.00 3.16
227 228 5.473162 TCATAACATAGGCACACATAATGGC 59.527 40.000 0.00 0.00 42.75 4.40
228 229 2.221169 ACATAGGCACACATAATGGCG 58.779 47.619 0.00 0.00 46.73 5.69
229 230 1.536766 CATAGGCACACATAATGGCGG 59.463 52.381 0.00 0.00 46.73 6.13
230 231 0.833949 TAGGCACACATAATGGCGGA 59.166 50.000 0.00 0.00 46.73 5.54
231 232 0.464373 AGGCACACATAATGGCGGAG 60.464 55.000 0.00 0.00 46.73 4.63
255 256 8.024145 AGCTTAGCTAGGTCATAATTTGTAGT 57.976 34.615 4.30 0.00 36.99 2.73
256 257 8.145122 AGCTTAGCTAGGTCATAATTTGTAGTC 58.855 37.037 4.30 0.00 36.99 2.59
257 258 7.115095 GCTTAGCTAGGTCATAATTTGTAGTCG 59.885 40.741 0.00 0.00 0.00 4.18
258 259 5.290386 AGCTAGGTCATAATTTGTAGTCGC 58.710 41.667 0.00 0.00 0.00 5.19
259 260 4.448060 GCTAGGTCATAATTTGTAGTCGCC 59.552 45.833 0.00 0.00 0.00 5.54
260 261 3.805207 AGGTCATAATTTGTAGTCGCCC 58.195 45.455 0.00 0.00 0.00 6.13
261 262 2.876550 GGTCATAATTTGTAGTCGCCCC 59.123 50.000 0.00 0.00 0.00 5.80
262 263 2.876550 GTCATAATTTGTAGTCGCCCCC 59.123 50.000 0.00 0.00 0.00 5.40
281 282 4.017126 CCCCCAACTCATAAGTTTCTTCC 58.983 47.826 0.00 0.00 43.28 3.46
282 283 4.017126 CCCCAACTCATAAGTTTCTTCCC 58.983 47.826 0.00 0.00 43.28 3.97
283 284 4.508405 CCCCAACTCATAAGTTTCTTCCCA 60.508 45.833 0.00 0.00 43.28 4.37
284 285 5.076873 CCCAACTCATAAGTTTCTTCCCAA 58.923 41.667 0.00 0.00 43.28 4.12
285 286 5.538433 CCCAACTCATAAGTTTCTTCCCAAA 59.462 40.000 0.00 0.00 43.28 3.28
286 287 6.211384 CCCAACTCATAAGTTTCTTCCCAAAT 59.789 38.462 0.00 0.00 43.28 2.32
287 288 7.315890 CCAACTCATAAGTTTCTTCCCAAATC 58.684 38.462 0.00 0.00 43.28 2.17
288 289 7.177392 CCAACTCATAAGTTTCTTCCCAAATCT 59.823 37.037 0.00 0.00 43.28 2.40
289 290 7.929941 ACTCATAAGTTTCTTCCCAAATCTC 57.070 36.000 0.00 0.00 28.74 2.75
290 291 7.461749 ACTCATAAGTTTCTTCCCAAATCTCA 58.538 34.615 0.00 0.00 28.74 3.27
291 292 8.112183 ACTCATAAGTTTCTTCCCAAATCTCAT 58.888 33.333 0.00 0.00 28.74 2.90
292 293 8.884124 TCATAAGTTTCTTCCCAAATCTCATT 57.116 30.769 0.00 0.00 0.00 2.57
293 294 9.312904 TCATAAGTTTCTTCCCAAATCTCATTT 57.687 29.630 0.00 0.00 0.00 2.32
294 295 9.933723 CATAAGTTTCTTCCCAAATCTCATTTT 57.066 29.630 0.00 0.00 0.00 1.82
295 296 9.933723 ATAAGTTTCTTCCCAAATCTCATTTTG 57.066 29.630 0.00 0.00 36.55 2.44
296 297 7.365497 AGTTTCTTCCCAAATCTCATTTTGT 57.635 32.000 0.00 0.00 35.30 2.83
297 298 7.795047 AGTTTCTTCCCAAATCTCATTTTGTT 58.205 30.769 0.00 0.00 35.30 2.83
298 299 8.267183 AGTTTCTTCCCAAATCTCATTTTGTTT 58.733 29.630 0.00 0.00 35.30 2.83
299 300 8.337532 GTTTCTTCCCAAATCTCATTTTGTTTG 58.662 33.333 0.00 0.00 35.30 2.93
300 301 5.990996 TCTTCCCAAATCTCATTTTGTTTGC 59.009 36.000 0.00 0.00 35.30 3.68
301 302 4.640364 TCCCAAATCTCATTTTGTTTGCC 58.360 39.130 0.00 0.00 35.30 4.52
302 303 3.432933 CCCAAATCTCATTTTGTTTGCCG 59.567 43.478 0.00 0.00 35.30 5.69
303 304 3.120580 CCAAATCTCATTTTGTTTGCCGC 60.121 43.478 0.00 0.00 35.30 6.53
304 305 2.368655 ATCTCATTTTGTTTGCCGCC 57.631 45.000 0.00 0.00 0.00 6.13
305 306 1.327303 TCTCATTTTGTTTGCCGCCT 58.673 45.000 0.00 0.00 0.00 5.52
306 307 1.269448 TCTCATTTTGTTTGCCGCCTC 59.731 47.619 0.00 0.00 0.00 4.70
307 308 0.316841 TCATTTTGTTTGCCGCCTCC 59.683 50.000 0.00 0.00 0.00 4.30
308 309 1.008361 CATTTTGTTTGCCGCCTCCG 61.008 55.000 0.00 0.00 0.00 4.63
309 310 2.763627 ATTTTGTTTGCCGCCTCCGC 62.764 55.000 0.00 0.00 0.00 5.54
320 321 4.803908 CCTCCGCCCCCAAAGCTC 62.804 72.222 0.00 0.00 0.00 4.09
321 322 4.803908 CTCCGCCCCCAAAGCTCC 62.804 72.222 0.00 0.00 0.00 4.70
323 324 4.803908 CCGCCCCCAAAGCTCCTC 62.804 72.222 0.00 0.00 0.00 3.71
324 325 4.803908 CGCCCCCAAAGCTCCTCC 62.804 72.222 0.00 0.00 0.00 4.30
325 326 3.661648 GCCCCCAAAGCTCCTCCA 61.662 66.667 0.00 0.00 0.00 3.86
326 327 3.001358 GCCCCCAAAGCTCCTCCAT 62.001 63.158 0.00 0.00 0.00 3.41
327 328 1.699752 CCCCCAAAGCTCCTCCATT 59.300 57.895 0.00 0.00 0.00 3.16
328 329 0.685458 CCCCCAAAGCTCCTCCATTG 60.685 60.000 0.00 0.00 0.00 2.82
329 330 0.685458 CCCCAAAGCTCCTCCATTGG 60.685 60.000 5.73 5.73 41.57 3.16
330 331 0.332632 CCCAAAGCTCCTCCATTGGA 59.667 55.000 13.15 5.05 44.01 3.53
331 332 1.467920 CCAAAGCTCCTCCATTGGAC 58.532 55.000 6.75 0.00 44.01 4.02
332 333 1.272092 CCAAAGCTCCTCCATTGGACA 60.272 52.381 6.75 0.00 44.01 4.02
333 334 1.815003 CAAAGCTCCTCCATTGGACAC 59.185 52.381 0.00 0.00 31.94 3.67
334 335 0.036010 AAGCTCCTCCATTGGACACG 60.036 55.000 0.00 0.00 31.94 4.49
335 336 2.109126 GCTCCTCCATTGGACACGC 61.109 63.158 0.00 0.59 31.94 5.34
336 337 1.296392 CTCCTCCATTGGACACGCA 59.704 57.895 0.00 0.00 31.94 5.24
337 338 1.003839 TCCTCCATTGGACACGCAC 60.004 57.895 0.00 0.00 0.00 5.34
338 339 1.003355 CCTCCATTGGACACGCACT 60.003 57.895 0.00 0.00 0.00 4.40
339 340 0.249120 CCTCCATTGGACACGCACTA 59.751 55.000 0.00 0.00 0.00 2.74
340 341 1.338674 CCTCCATTGGACACGCACTAA 60.339 52.381 0.00 0.00 0.00 2.24
341 342 1.732259 CTCCATTGGACACGCACTAAC 59.268 52.381 0.00 0.00 0.00 2.34
342 343 1.070914 TCCATTGGACACGCACTAACA 59.929 47.619 0.00 0.00 0.00 2.41
343 344 1.876799 CCATTGGACACGCACTAACAA 59.123 47.619 0.00 0.00 0.00 2.83
344 345 2.350388 CCATTGGACACGCACTAACAAC 60.350 50.000 0.00 0.00 0.00 3.32
345 346 2.025589 TTGGACACGCACTAACAACA 57.974 45.000 0.00 0.00 0.00 3.33
346 347 1.292061 TGGACACGCACTAACAACAC 58.708 50.000 0.00 0.00 0.00 3.32
347 348 0.584876 GGACACGCACTAACAACACC 59.415 55.000 0.00 0.00 0.00 4.16
348 349 1.292061 GACACGCACTAACAACACCA 58.708 50.000 0.00 0.00 0.00 4.17
349 350 1.004292 GACACGCACTAACAACACCAC 60.004 52.381 0.00 0.00 0.00 4.16
350 351 0.042535 CACGCACTAACAACACCACG 60.043 55.000 0.00 0.00 0.00 4.94
351 352 1.083015 CGCACTAACAACACCACGC 60.083 57.895 0.00 0.00 0.00 5.34
352 353 1.083015 GCACTAACAACACCACGCG 60.083 57.895 3.53 3.53 0.00 6.01
353 354 1.083015 CACTAACAACACCACGCGC 60.083 57.895 5.73 0.00 0.00 6.86
354 355 1.521906 ACTAACAACACCACGCGCA 60.522 52.632 5.73 0.00 0.00 6.09
355 356 0.882927 ACTAACAACACCACGCGCAT 60.883 50.000 5.73 0.00 0.00 4.73
356 357 0.452618 CTAACAACACCACGCGCATG 60.453 55.000 5.73 0.58 0.00 4.06
357 358 2.450960 TAACAACACCACGCGCATGC 62.451 55.000 5.73 7.91 37.91 4.06
358 359 4.325304 CAACACCACGCGCATGCA 62.325 61.111 19.57 0.00 42.97 3.96
359 360 4.326766 AACACCACGCGCATGCAC 62.327 61.111 19.57 7.15 42.97 4.57
361 362 4.450122 CACCACGCGCATGCACTC 62.450 66.667 19.57 5.00 42.97 3.51
362 363 4.986645 ACCACGCGCATGCACTCA 62.987 61.111 19.57 0.00 42.97 3.41
363 364 3.502455 CCACGCGCATGCACTCAT 61.502 61.111 19.57 0.00 42.97 2.90
364 365 2.173020 CCACGCGCATGCACTCATA 61.173 57.895 19.57 0.00 42.97 2.15
365 366 1.501337 CCACGCGCATGCACTCATAT 61.501 55.000 19.57 0.00 42.97 1.78
366 367 1.139163 CACGCGCATGCACTCATATA 58.861 50.000 19.57 0.00 42.97 0.86
367 368 1.728425 CACGCGCATGCACTCATATAT 59.272 47.619 19.57 0.00 42.97 0.86
368 369 1.995484 ACGCGCATGCACTCATATATC 59.005 47.619 19.57 0.00 42.97 1.63
369 370 1.994779 CGCGCATGCACTCATATATCA 59.005 47.619 19.57 0.00 42.97 2.15
370 371 2.222663 CGCGCATGCACTCATATATCAC 60.223 50.000 19.57 0.00 42.97 3.06
371 372 2.094894 GCGCATGCACTCATATATCACC 59.905 50.000 19.57 0.00 42.15 4.02
372 373 3.593096 CGCATGCACTCATATATCACCT 58.407 45.455 19.57 0.00 0.00 4.00
373 374 4.747810 CGCATGCACTCATATATCACCTA 58.252 43.478 19.57 0.00 0.00 3.08
374 375 5.354767 CGCATGCACTCATATATCACCTAT 58.645 41.667 19.57 0.00 0.00 2.57
375 376 5.233689 CGCATGCACTCATATATCACCTATG 59.766 44.000 19.57 0.00 0.00 2.23
376 377 5.526479 GCATGCACTCATATATCACCTATGG 59.474 44.000 14.21 0.00 0.00 2.74
377 378 6.631088 GCATGCACTCATATATCACCTATGGA 60.631 42.308 14.21 0.00 0.00 3.41
378 379 6.933514 TGCACTCATATATCACCTATGGAA 57.066 37.500 0.00 0.00 0.00 3.53
379 380 6.939622 TGCACTCATATATCACCTATGGAAG 58.060 40.000 0.00 0.00 0.00 3.46
388 389 3.923354 CCTATGGAAGGCTGGATCG 57.077 57.895 0.00 0.00 38.97 3.69
389 390 1.342074 CCTATGGAAGGCTGGATCGA 58.658 55.000 0.00 0.00 38.97 3.59
390 391 1.905215 CCTATGGAAGGCTGGATCGAT 59.095 52.381 0.00 0.00 38.97 3.59
391 392 3.099905 CCTATGGAAGGCTGGATCGATA 58.900 50.000 0.00 0.00 38.97 2.92
392 393 3.131933 CCTATGGAAGGCTGGATCGATAG 59.868 52.174 0.00 8.80 38.97 2.08
393 394 2.088104 TGGAAGGCTGGATCGATAGT 57.912 50.000 0.00 0.00 37.40 2.12
394 395 1.688735 TGGAAGGCTGGATCGATAGTG 59.311 52.381 0.00 0.00 37.40 2.74
395 396 1.606737 GGAAGGCTGGATCGATAGTGC 60.607 57.143 0.00 2.53 37.40 4.40
396 397 0.032678 AAGGCTGGATCGATAGTGCG 59.967 55.000 0.00 0.00 37.40 5.34
397 398 1.373497 GGCTGGATCGATAGTGCGG 60.373 63.158 0.00 0.00 37.40 5.69
398 399 1.660355 GCTGGATCGATAGTGCGGA 59.340 57.895 0.00 0.00 37.40 5.54
399 400 0.387878 GCTGGATCGATAGTGCGGAG 60.388 60.000 0.00 0.00 37.40 4.63
416 417 4.670227 CGGAGCTTTAAGGTTGAGAAAG 57.330 45.455 0.00 0.00 34.06 2.62
417 418 4.065789 CGGAGCTTTAAGGTTGAGAAAGT 58.934 43.478 0.00 0.00 33.58 2.66
418 419 4.152580 CGGAGCTTTAAGGTTGAGAAAGTC 59.847 45.833 0.00 0.00 33.58 3.01
419 420 5.063880 GGAGCTTTAAGGTTGAGAAAGTCA 58.936 41.667 0.00 0.00 33.58 3.41
420 421 5.049336 GGAGCTTTAAGGTTGAGAAAGTCAC 60.049 44.000 0.00 0.00 33.71 3.67
421 422 4.822350 AGCTTTAAGGTTGAGAAAGTCACC 59.178 41.667 0.00 0.00 33.71 4.02
422 423 4.578928 GCTTTAAGGTTGAGAAAGTCACCA 59.421 41.667 0.00 0.00 33.71 4.17
423 424 5.241728 GCTTTAAGGTTGAGAAAGTCACCAT 59.758 40.000 0.00 0.00 33.71 3.55
424 425 6.633500 TTTAAGGTTGAGAAAGTCACCATG 57.367 37.500 0.00 0.00 33.71 3.66
425 426 4.437682 AAGGTTGAGAAAGTCACCATGA 57.562 40.909 0.00 0.00 33.71 3.07
426 427 4.437682 AGGTTGAGAAAGTCACCATGAA 57.562 40.909 0.00 0.00 33.71 2.57
427 428 4.137543 AGGTTGAGAAAGTCACCATGAAC 58.862 43.478 0.00 0.00 33.71 3.18
428 429 3.882888 GGTTGAGAAAGTCACCATGAACA 59.117 43.478 0.00 0.00 33.71 3.18
429 430 4.261197 GGTTGAGAAAGTCACCATGAACAC 60.261 45.833 0.00 0.00 33.71 3.32
430 431 3.476552 TGAGAAAGTCACCATGAACACC 58.523 45.455 0.00 0.00 0.00 4.16
431 432 3.136443 TGAGAAAGTCACCATGAACACCT 59.864 43.478 0.00 0.00 0.00 4.00
432 433 4.346709 TGAGAAAGTCACCATGAACACCTA 59.653 41.667 0.00 0.00 0.00 3.08
433 434 4.899502 AGAAAGTCACCATGAACACCTAG 58.100 43.478 0.00 0.00 0.00 3.02
434 435 4.348168 AGAAAGTCACCATGAACACCTAGT 59.652 41.667 0.00 0.00 0.00 2.57
435 436 4.706842 AAGTCACCATGAACACCTAGTT 57.293 40.909 0.00 0.00 44.93 2.24
436 437 5.818678 AAGTCACCATGAACACCTAGTTA 57.181 39.130 0.00 0.00 41.51 2.24
437 438 6.374417 AAGTCACCATGAACACCTAGTTAT 57.626 37.500 0.00 0.00 41.51 1.89
438 439 5.978814 AGTCACCATGAACACCTAGTTATC 58.021 41.667 0.00 0.00 41.51 1.75
439 440 4.804139 GTCACCATGAACACCTAGTTATCG 59.196 45.833 0.00 0.00 41.51 2.92
440 441 4.707934 TCACCATGAACACCTAGTTATCGA 59.292 41.667 0.00 0.00 41.51 3.59
441 442 4.804139 CACCATGAACACCTAGTTATCGAC 59.196 45.833 0.00 0.00 41.51 4.20
442 443 4.042398 CCATGAACACCTAGTTATCGACG 58.958 47.826 0.00 0.00 41.51 5.12
443 444 3.770263 TGAACACCTAGTTATCGACGG 57.230 47.619 0.00 0.00 41.51 4.79
444 445 2.424601 TGAACACCTAGTTATCGACGGG 59.575 50.000 0.00 0.00 41.51 5.28
445 446 2.425143 ACACCTAGTTATCGACGGGA 57.575 50.000 0.00 0.00 32.77 5.14
446 447 2.726821 ACACCTAGTTATCGACGGGAA 58.273 47.619 0.00 0.00 32.77 3.97
447 448 3.294214 ACACCTAGTTATCGACGGGAAT 58.706 45.455 0.00 0.00 32.77 3.01
448 449 3.067742 ACACCTAGTTATCGACGGGAATG 59.932 47.826 0.00 0.00 32.77 2.67
449 450 3.067742 CACCTAGTTATCGACGGGAATGT 59.932 47.826 0.00 0.00 32.77 2.71
450 451 3.703052 ACCTAGTTATCGACGGGAATGTT 59.297 43.478 0.00 0.00 32.77 2.71
451 452 4.049186 CCTAGTTATCGACGGGAATGTTG 58.951 47.826 0.00 0.00 0.00 3.33
452 453 2.277084 AGTTATCGACGGGAATGTTGC 58.723 47.619 0.00 0.00 0.00 4.17
453 454 1.329599 GTTATCGACGGGAATGTTGCC 59.670 52.381 0.00 0.00 35.00 4.52
454 455 0.828022 TATCGACGGGAATGTTGCCT 59.172 50.000 1.79 0.00 36.39 4.75
455 456 0.462047 ATCGACGGGAATGTTGCCTC 60.462 55.000 1.79 0.00 36.39 4.70
456 457 1.079127 CGACGGGAATGTTGCCTCT 60.079 57.895 1.79 0.00 36.39 3.69
457 458 0.673644 CGACGGGAATGTTGCCTCTT 60.674 55.000 1.79 0.00 36.39 2.85
458 459 1.404986 CGACGGGAATGTTGCCTCTTA 60.405 52.381 1.79 0.00 36.39 2.10
459 460 2.741878 CGACGGGAATGTTGCCTCTTAT 60.742 50.000 1.79 0.00 36.39 1.73
460 461 3.279434 GACGGGAATGTTGCCTCTTATT 58.721 45.455 1.79 0.00 36.39 1.40
461 462 4.448210 GACGGGAATGTTGCCTCTTATTA 58.552 43.478 1.79 0.00 36.39 0.98
462 463 4.850680 ACGGGAATGTTGCCTCTTATTAA 58.149 39.130 1.79 0.00 36.39 1.40
463 464 5.258051 ACGGGAATGTTGCCTCTTATTAAA 58.742 37.500 1.79 0.00 36.39 1.52
464 465 5.712917 ACGGGAATGTTGCCTCTTATTAAAA 59.287 36.000 1.79 0.00 36.39 1.52
465 466 6.209788 ACGGGAATGTTGCCTCTTATTAAAAA 59.790 34.615 1.79 0.00 36.39 1.94
488 489 7.497925 AAATAATCCTCGTTAATGAGAAGCC 57.502 36.000 23.60 0.00 38.28 4.35
489 490 4.487714 AATCCTCGTTAATGAGAAGCCA 57.512 40.909 23.60 4.89 38.28 4.75
490 491 3.973206 TCCTCGTTAATGAGAAGCCAA 57.027 42.857 23.60 2.06 38.28 4.52
491 492 4.280436 TCCTCGTTAATGAGAAGCCAAA 57.720 40.909 23.60 0.55 38.28 3.28
492 493 4.647611 TCCTCGTTAATGAGAAGCCAAAA 58.352 39.130 23.60 0.00 38.28 2.44
493 494 4.695455 TCCTCGTTAATGAGAAGCCAAAAG 59.305 41.667 23.60 5.98 38.28 2.27
494 495 4.406943 CTCGTTAATGAGAAGCCAAAAGC 58.593 43.478 18.27 0.00 38.28 3.51
495 496 6.827642 CCTCGTTAATGAGAAGCCAAAAGCT 61.828 44.000 23.60 0.00 42.93 3.74
506 507 3.598019 GCCAAAAGCTTCAATCATCCA 57.402 42.857 0.00 0.00 38.99 3.41
507 508 3.929094 GCCAAAAGCTTCAATCATCCAA 58.071 40.909 0.00 0.00 38.99 3.53
508 509 3.681417 GCCAAAAGCTTCAATCATCCAAC 59.319 43.478 0.00 0.00 38.99 3.77
509 510 4.800249 GCCAAAAGCTTCAATCATCCAACA 60.800 41.667 0.00 0.00 38.99 3.33
510 511 4.687483 CCAAAAGCTTCAATCATCCAACAC 59.313 41.667 0.00 0.00 0.00 3.32
511 512 5.510179 CCAAAAGCTTCAATCATCCAACACT 60.510 40.000 0.00 0.00 0.00 3.55
512 513 4.778534 AAGCTTCAATCATCCAACACTG 57.221 40.909 0.00 0.00 0.00 3.66
581 582 2.552315 CAACTGTCGGGCAAAGTACATT 59.448 45.455 0.00 0.00 0.00 2.71
586 587 4.391155 TGTCGGGCAAAGTACATTTTACT 58.609 39.130 0.00 0.00 0.00 2.24
587 588 4.214545 TGTCGGGCAAAGTACATTTTACTG 59.785 41.667 0.00 0.00 0.00 2.74
629 630 7.361201 CGACATTAGGCATCCCAAAACATATAG 60.361 40.741 0.00 0.00 0.00 1.31
630 631 7.297614 ACATTAGGCATCCCAAAACATATAGT 58.702 34.615 0.00 0.00 0.00 2.12
631 632 8.444783 ACATTAGGCATCCCAAAACATATAGTA 58.555 33.333 0.00 0.00 0.00 1.82
632 633 8.730680 CATTAGGCATCCCAAAACATATAGTAC 58.269 37.037 0.00 0.00 0.00 2.73
659 660 1.839424 AGCAGTTAGGTGGCCATTTC 58.161 50.000 9.72 1.52 0.00 2.17
660 661 0.817654 GCAGTTAGGTGGCCATTTCC 59.182 55.000 9.72 5.54 0.00 3.13
662 663 0.335019 AGTTAGGTGGCCATTTCCCC 59.665 55.000 9.72 4.60 0.00 4.81
683 684 0.324460 CAACCCTCTACCGACCTCCT 60.324 60.000 0.00 0.00 0.00 3.69
689 690 4.854436 ACCCTCTACCGACCTCCTATATTA 59.146 45.833 0.00 0.00 0.00 0.98
739 740 2.990066 ATTAGGAGCAGTACAGCACC 57.010 50.000 17.15 17.15 44.37 5.01
741 742 2.125512 GGAGCAGTACAGCACCGG 60.126 66.667 13.16 0.00 35.60 5.28
830 831 0.476611 ACCCTCTTGAAGCCCTTCCT 60.477 55.000 5.64 0.00 38.77 3.36
886 887 3.832490 ACCAAGTTATTCCTTTGAAGCCC 59.168 43.478 0.00 0.00 33.05 5.19
927 928 1.552578 TGACGAAGCCAACCTAGCTA 58.447 50.000 0.00 0.00 40.49 3.32
928 929 1.476891 TGACGAAGCCAACCTAGCTAG 59.523 52.381 14.20 14.20 40.49 3.42
929 930 0.175989 ACGAAGCCAACCTAGCTAGC 59.824 55.000 15.74 6.62 40.49 3.42
930 931 0.461961 CGAAGCCAACCTAGCTAGCT 59.538 55.000 23.12 23.12 40.49 3.32
962 968 5.453266 CGTACCGTGTGGCATTATATATACG 59.547 44.000 0.00 0.00 39.70 3.06
1338 1345 2.179517 CTCACCGTCGAGCAGTCC 59.820 66.667 0.00 0.00 0.00 3.85
1585 1592 2.594592 AACCACGTGAGCAAGCCC 60.595 61.111 19.30 0.00 0.00 5.19
1604 1611 4.012895 GGTGGTGCTGCGACAACG 62.013 66.667 0.00 0.00 42.93 4.10
1775 1782 6.441274 TCAAACGACTGGTACAAGTAAGTAG 58.559 40.000 1.89 4.19 38.70 2.57
1777 1784 5.368256 ACGACTGGTACAAGTAAGTAGTG 57.632 43.478 1.89 0.00 38.70 2.74
1778 1785 4.164294 CGACTGGTACAAGTAAGTAGTGC 58.836 47.826 1.89 0.00 38.70 4.40
1802 1809 8.153550 TGCTTTTTCTCCTATCCTGATTAGATC 58.846 37.037 0.00 0.00 0.00 2.75
1845 1855 6.584185 AAATTATCACCACCAGTAAACACC 57.416 37.500 0.00 0.00 0.00 4.16
1882 1892 3.997021 CCTATTCCTAATGTCGACCATGC 59.003 47.826 14.12 0.00 32.82 4.06
1901 1922 3.745799 TGCCGGTGATAAAAGTCTCAAA 58.254 40.909 1.90 0.00 0.00 2.69
1986 2008 3.585862 GACGAGTAAATGAGCCTGAACA 58.414 45.455 0.00 0.00 0.00 3.18
1987 2009 3.994392 GACGAGTAAATGAGCCTGAACAA 59.006 43.478 0.00 0.00 0.00 2.83
1988 2010 3.997021 ACGAGTAAATGAGCCTGAACAAG 59.003 43.478 0.00 0.00 0.00 3.16
1997 2019 3.244215 TGAGCCTGAACAAGAACCTAGTG 60.244 47.826 0.00 0.00 0.00 2.74
2068 2090 4.507710 TGTGAGAGACAGTAATGGCATTC 58.492 43.478 17.41 8.63 0.00 2.67
2099 2121 4.162690 GGGTAGCCGTCCAGCAGG 62.163 72.222 0.00 0.00 34.23 4.85
2131 2158 3.964688 TCTTTCAGTGAACCACCAGTAGA 59.035 43.478 4.68 0.18 34.49 2.59
2132 2159 3.746045 TTCAGTGAACCACCAGTAGAC 57.254 47.619 0.08 0.00 34.49 2.59
2133 2160 2.673258 TCAGTGAACCACCAGTAGACA 58.327 47.619 0.00 0.00 34.49 3.41
2134 2161 2.628178 TCAGTGAACCACCAGTAGACAG 59.372 50.000 0.00 0.00 34.49 3.51
2135 2162 2.365617 CAGTGAACCACCAGTAGACAGT 59.634 50.000 0.00 0.00 34.49 3.55
2136 2163 3.572682 CAGTGAACCACCAGTAGACAGTA 59.427 47.826 0.00 0.00 34.49 2.74
2137 2164 3.827302 AGTGAACCACCAGTAGACAGTAG 59.173 47.826 0.00 0.00 34.49 2.57
2138 2165 3.573110 GTGAACCACCAGTAGACAGTAGT 59.427 47.826 0.00 0.00 0.00 2.73
2139 2166 3.825014 TGAACCACCAGTAGACAGTAGTC 59.175 47.826 0.00 0.00 45.31 2.59
2140 2167 2.805194 ACCACCAGTAGACAGTAGTCC 58.195 52.381 0.00 0.00 46.15 3.85
2141 2168 2.379226 ACCACCAGTAGACAGTAGTCCT 59.621 50.000 0.00 0.00 46.15 3.85
2142 2169 3.181420 ACCACCAGTAGACAGTAGTCCTT 60.181 47.826 0.00 0.00 46.15 3.36
2143 2170 3.444388 CCACCAGTAGACAGTAGTCCTTC 59.556 52.174 0.00 0.00 46.15 3.46
2144 2171 3.444388 CACCAGTAGACAGTAGTCCTTCC 59.556 52.174 0.00 0.00 46.15 3.46
2153 2180 2.164624 CAGTAGTCCTTCCTCCTTCGTG 59.835 54.545 0.00 0.00 0.00 4.35
2186 2214 2.183478 TGAGCTTTCAATGCCTCGAA 57.817 45.000 0.00 0.00 0.00 3.71
2192 2220 3.182372 GCTTTCAATGCCTCGAACAAAAC 59.818 43.478 0.00 0.00 0.00 2.43
2193 2221 4.610945 CTTTCAATGCCTCGAACAAAACT 58.389 39.130 0.00 0.00 0.00 2.66
2194 2222 3.624326 TCAATGCCTCGAACAAAACTG 57.376 42.857 0.00 0.00 0.00 3.16
2195 2223 2.053627 CAATGCCTCGAACAAAACTGC 58.946 47.619 0.00 0.00 0.00 4.40
2196 2224 1.317613 ATGCCTCGAACAAAACTGCA 58.682 45.000 0.00 0.00 0.00 4.41
2197 2225 1.098869 TGCCTCGAACAAAACTGCAA 58.901 45.000 0.00 0.00 0.00 4.08
2198 2226 1.474478 TGCCTCGAACAAAACTGCAAA 59.526 42.857 0.00 0.00 0.00 3.68
2199 2227 2.094494 TGCCTCGAACAAAACTGCAAAA 60.094 40.909 0.00 0.00 0.00 2.44
2261 2297 2.360726 TGGCACATGCAGCTGAGG 60.361 61.111 20.43 8.08 44.36 3.86
2262 2298 3.138798 GGCACATGCAGCTGAGGG 61.139 66.667 20.43 8.61 44.36 4.30
2263 2299 3.823330 GCACATGCAGCTGAGGGC 61.823 66.667 20.43 15.33 41.59 5.19
2276 2327 0.900182 TGAGGGCTGACACTGACGAT 60.900 55.000 0.00 0.00 0.00 3.73
2352 2412 1.142748 GGTGCTGGTGATCCTCTCG 59.857 63.158 0.00 0.00 34.23 4.04
2740 2800 3.807538 TCTACGGCGTGCTCGACC 61.808 66.667 24.86 11.46 42.91 4.79
2848 2909 1.546476 CTGCTCTGTTCGTCTTACCCT 59.454 52.381 0.00 0.00 0.00 4.34
3199 3260 3.071459 GCCGTCAACGCATCGTCTG 62.071 63.158 0.00 0.00 39.99 3.51
3207 3268 2.504026 GCATCGTCTGCGTCGTCA 60.504 61.111 0.00 0.00 41.97 4.35
3337 3398 0.687354 GGAGAGCCAGTGGTTCAAGA 59.313 55.000 25.84 0.00 35.33 3.02
3527 3588 2.223479 CGAGAGAAGCTGCTCTAGAACC 60.223 54.545 24.93 10.60 44.92 3.62
3531 3592 1.204941 GAAGCTGCTCTAGAACCGGAA 59.795 52.381 9.46 0.00 0.00 4.30
3546 3607 6.998802 AGAACCGGAATAATATCCTTCAGAG 58.001 40.000 9.46 0.00 37.34 3.35
3723 3784 1.537638 ACACAGAAAACACACACGCAA 59.462 42.857 0.00 0.00 0.00 4.85
3746 3807 2.128274 CACGAAAACACGACGCGG 60.128 61.111 12.47 0.00 37.03 6.46
3779 3840 8.421673 AGAAAGAACATACTTCTAAATACGGC 57.578 34.615 0.00 0.00 0.00 5.68
4195 4256 1.242076 ACATGTTGAGCAGTCCAAGC 58.758 50.000 0.00 0.00 0.00 4.01
4233 4294 4.792087 ACCGTAAACCTGGTGCAG 57.208 55.556 0.00 0.00 37.02 4.41
4283 4344 6.560253 AGTAAACTAGGCTCAACAAATGTG 57.440 37.500 0.00 0.00 0.00 3.21
4339 4400 6.351286 GCTCCATTAACCAGAATGAAACCAAT 60.351 38.462 0.00 0.00 39.69 3.16
4343 4404 3.665745 ACCAGAATGAAACCAATGCAC 57.334 42.857 0.00 0.00 39.69 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.507377 GAATATGGGGTGGCCCGGG 62.507 68.421 19.09 19.09 46.66 5.73
3 4 2.115266 GAATATGGGGTGGCCCGG 59.885 66.667 0.00 0.00 46.66 5.73
4 5 2.281484 CGAATATGGGGTGGCCCG 60.281 66.667 0.00 0.00 46.66 6.13
5 6 2.597510 GCGAATATGGGGTGGCCC 60.598 66.667 0.00 0.00 44.51 5.80
6 7 2.597510 GGCGAATATGGGGTGGCC 60.598 66.667 0.00 0.00 0.00 5.36
7 8 2.597510 GGGCGAATATGGGGTGGC 60.598 66.667 0.00 0.00 0.00 5.01
8 9 2.115266 GGGGCGAATATGGGGTGG 59.885 66.667 0.00 0.00 0.00 4.61
9 10 1.228245 CTGGGGCGAATATGGGGTG 60.228 63.158 0.00 0.00 0.00 4.61
10 11 0.772124 ATCTGGGGCGAATATGGGGT 60.772 55.000 0.00 0.00 0.00 4.95
11 12 0.405585 AATCTGGGGCGAATATGGGG 59.594 55.000 0.00 0.00 0.00 4.96
12 13 1.888512 CAAATCTGGGGCGAATATGGG 59.111 52.381 0.00 0.00 0.00 4.00
13 14 1.888512 CCAAATCTGGGGCGAATATGG 59.111 52.381 0.00 0.00 39.30 2.74
25 26 2.889045 CCACATATCCAGCCCAAATCTG 59.111 50.000 0.00 0.00 0.00 2.90
26 27 2.158415 CCCACATATCCAGCCCAAATCT 60.158 50.000 0.00 0.00 0.00 2.40
27 28 2.242043 CCCACATATCCAGCCCAAATC 58.758 52.381 0.00 0.00 0.00 2.17
28 29 1.133072 CCCCACATATCCAGCCCAAAT 60.133 52.381 0.00 0.00 0.00 2.32
29 30 0.261402 CCCCACATATCCAGCCCAAA 59.739 55.000 0.00 0.00 0.00 3.28
30 31 0.923729 ACCCCACATATCCAGCCCAA 60.924 55.000 0.00 0.00 0.00 4.12
31 32 1.308657 ACCCCACATATCCAGCCCA 60.309 57.895 0.00 0.00 0.00 5.36
32 33 1.151450 CACCCCACATATCCAGCCC 59.849 63.158 0.00 0.00 0.00 5.19
33 34 1.529244 GCACCCCACATATCCAGCC 60.529 63.158 0.00 0.00 0.00 4.85
34 35 1.529244 GGCACCCCACATATCCAGC 60.529 63.158 0.00 0.00 0.00 4.85
35 36 1.227943 CGGCACCCCACATATCCAG 60.228 63.158 0.00 0.00 0.00 3.86
36 37 2.751731 CCGGCACCCCACATATCCA 61.752 63.158 0.00 0.00 0.00 3.41
37 38 2.113139 CCGGCACCCCACATATCC 59.887 66.667 0.00 0.00 0.00 2.59
38 39 1.227853 GACCGGCACCCCACATATC 60.228 63.158 0.00 0.00 0.00 1.63
39 40 1.983119 CTGACCGGCACCCCACATAT 61.983 60.000 0.00 0.00 0.00 1.78
40 41 2.608059 TGACCGGCACCCCACATA 60.608 61.111 0.00 0.00 0.00 2.29
41 42 4.033776 CTGACCGGCACCCCACAT 62.034 66.667 0.00 0.00 0.00 3.21
53 54 2.983592 CAAACACCCGGGCTGACC 60.984 66.667 24.08 0.00 0.00 4.02
54 55 1.966451 CTCAAACACCCGGGCTGAC 60.966 63.158 24.08 0.00 0.00 3.51
55 56 2.429930 CTCAAACACCCGGGCTGA 59.570 61.111 24.08 17.12 0.00 4.26
56 57 2.672996 CCTCAAACACCCGGGCTG 60.673 66.667 24.08 20.40 0.00 4.85
57 58 4.660938 GCCTCAAACACCCGGGCT 62.661 66.667 24.08 4.79 39.68 5.19
59 60 4.636435 ACGCCTCAAACACCCGGG 62.636 66.667 22.25 22.25 0.00 5.73
60 61 3.047877 GACGCCTCAAACACCCGG 61.048 66.667 0.00 0.00 0.00 5.73
61 62 3.047877 GGACGCCTCAAACACCCG 61.048 66.667 0.00 0.00 0.00 5.28
62 63 3.047877 CGGACGCCTCAAACACCC 61.048 66.667 0.00 0.00 0.00 4.61
63 64 1.441732 AAACGGACGCCTCAAACACC 61.442 55.000 0.00 0.00 0.00 4.16
64 65 0.316689 CAAACGGACGCCTCAAACAC 60.317 55.000 0.00 0.00 0.00 3.32
65 66 1.440938 CCAAACGGACGCCTCAAACA 61.441 55.000 0.00 0.00 0.00 2.83
66 67 1.161563 TCCAAACGGACGCCTCAAAC 61.162 55.000 0.00 0.00 0.00 2.93
67 68 0.250553 ATCCAAACGGACGCCTCAAA 60.251 50.000 0.00 0.00 34.62 2.69
68 69 0.672401 GATCCAAACGGACGCCTCAA 60.672 55.000 0.00 0.00 34.62 3.02
69 70 1.079405 GATCCAAACGGACGCCTCA 60.079 57.895 0.00 0.00 34.62 3.86
70 71 1.814169 GGATCCAAACGGACGCCTC 60.814 63.158 6.95 0.00 34.62 4.70
71 72 1.838073 AAGGATCCAAACGGACGCCT 61.838 55.000 15.82 0.00 40.65 5.52
72 73 1.366854 GAAGGATCCAAACGGACGCC 61.367 60.000 15.82 0.00 34.62 5.68
73 74 0.391263 AGAAGGATCCAAACGGACGC 60.391 55.000 15.82 0.00 34.62 5.19
74 75 1.204941 AGAGAAGGATCCAAACGGACG 59.795 52.381 15.82 0.00 34.62 4.79
75 76 3.336138 AAGAGAAGGATCCAAACGGAC 57.664 47.619 15.82 0.00 34.62 4.79
76 77 3.197116 GGTAAGAGAAGGATCCAAACGGA 59.803 47.826 15.82 0.00 36.85 4.69
77 78 3.532542 GGTAAGAGAAGGATCCAAACGG 58.467 50.000 15.82 0.00 0.00 4.44
78 79 3.187700 CGGTAAGAGAAGGATCCAAACG 58.812 50.000 15.82 0.67 0.00 3.60
79 80 3.055312 ACCGGTAAGAGAAGGATCCAAAC 60.055 47.826 15.82 4.61 0.00 2.93
80 81 3.178865 ACCGGTAAGAGAAGGATCCAAA 58.821 45.455 15.82 0.00 0.00 3.28
81 82 2.764572 GACCGGTAAGAGAAGGATCCAA 59.235 50.000 15.82 0.00 0.00 3.53
82 83 2.291996 TGACCGGTAAGAGAAGGATCCA 60.292 50.000 15.82 0.00 0.00 3.41
83 84 2.101082 GTGACCGGTAAGAGAAGGATCC 59.899 54.545 7.34 2.48 0.00 3.36
84 85 3.025262 AGTGACCGGTAAGAGAAGGATC 58.975 50.000 7.34 0.00 0.00 3.36
85 86 2.761208 CAGTGACCGGTAAGAGAAGGAT 59.239 50.000 7.34 0.00 0.00 3.24
86 87 2.168496 CAGTGACCGGTAAGAGAAGGA 58.832 52.381 7.34 0.00 0.00 3.36
87 88 2.094649 GTCAGTGACCGGTAAGAGAAGG 60.095 54.545 7.34 0.00 0.00 3.46
88 89 2.094649 GGTCAGTGACCGGTAAGAGAAG 60.095 54.545 26.12 0.00 43.14 2.85
89 90 1.891150 GGTCAGTGACCGGTAAGAGAA 59.109 52.381 26.12 0.00 43.14 2.87
90 91 1.542492 GGTCAGTGACCGGTAAGAGA 58.458 55.000 26.12 0.22 43.14 3.10
100 101 4.736896 GACGGCCCGGTCAGTGAC 62.737 72.222 15.24 15.24 36.91 3.67
111 112 3.665675 AATGCTCGAGTGGACGGCC 62.666 63.158 15.13 0.00 0.00 6.13
112 113 1.741770 AAATGCTCGAGTGGACGGC 60.742 57.895 15.13 0.00 0.00 5.68
113 114 0.389817 TCAAATGCTCGAGTGGACGG 60.390 55.000 15.13 0.16 0.00 4.79
114 115 1.391485 CTTCAAATGCTCGAGTGGACG 59.609 52.381 15.13 0.61 0.00 4.79
115 116 2.413453 GTCTTCAAATGCTCGAGTGGAC 59.587 50.000 15.13 4.63 0.00 4.02
116 117 2.300152 AGTCTTCAAATGCTCGAGTGGA 59.700 45.455 15.13 0.00 0.00 4.02
117 118 2.414481 CAGTCTTCAAATGCTCGAGTGG 59.586 50.000 15.13 0.00 0.00 4.00
118 119 3.062763 ACAGTCTTCAAATGCTCGAGTG 58.937 45.455 15.13 4.24 0.00 3.51
119 120 3.393089 ACAGTCTTCAAATGCTCGAGT 57.607 42.857 15.13 0.00 0.00 4.18
120 121 4.212004 TCAAACAGTCTTCAAATGCTCGAG 59.788 41.667 8.45 8.45 0.00 4.04
121 122 4.126437 TCAAACAGTCTTCAAATGCTCGA 58.874 39.130 0.00 0.00 0.00 4.04
122 123 4.472691 TCAAACAGTCTTCAAATGCTCG 57.527 40.909 0.00 0.00 0.00 5.03
123 124 4.678742 GCTTCAAACAGTCTTCAAATGCTC 59.321 41.667 0.00 0.00 0.00 4.26
124 125 4.614946 GCTTCAAACAGTCTTCAAATGCT 58.385 39.130 0.00 0.00 0.00 3.79
125 126 3.423206 CGCTTCAAACAGTCTTCAAATGC 59.577 43.478 0.00 0.00 0.00 3.56
126 127 3.423206 GCGCTTCAAACAGTCTTCAAATG 59.577 43.478 0.00 0.00 0.00 2.32
127 128 3.316308 AGCGCTTCAAACAGTCTTCAAAT 59.684 39.130 2.64 0.00 0.00 2.32
128 129 2.682856 AGCGCTTCAAACAGTCTTCAAA 59.317 40.909 2.64 0.00 0.00 2.69
129 130 2.287915 GAGCGCTTCAAACAGTCTTCAA 59.712 45.455 13.26 0.00 0.00 2.69
130 131 1.867233 GAGCGCTTCAAACAGTCTTCA 59.133 47.619 13.26 0.00 0.00 3.02
131 132 1.136502 CGAGCGCTTCAAACAGTCTTC 60.137 52.381 13.26 0.00 0.00 2.87
132 133 0.861837 CGAGCGCTTCAAACAGTCTT 59.138 50.000 13.26 0.00 0.00 3.01
133 134 0.032130 TCGAGCGCTTCAAACAGTCT 59.968 50.000 13.26 0.00 0.00 3.24
134 135 1.071605 ATCGAGCGCTTCAAACAGTC 58.928 50.000 13.26 0.00 0.00 3.51
135 136 0.792640 CATCGAGCGCTTCAAACAGT 59.207 50.000 13.26 0.00 0.00 3.55
136 137 0.792640 ACATCGAGCGCTTCAAACAG 59.207 50.000 13.26 0.65 0.00 3.16
137 138 0.512518 CACATCGAGCGCTTCAAACA 59.487 50.000 13.26 0.00 0.00 2.83
138 139 0.790207 TCACATCGAGCGCTTCAAAC 59.210 50.000 13.26 0.00 0.00 2.93
139 140 1.507562 TTCACATCGAGCGCTTCAAA 58.492 45.000 13.26 0.00 0.00 2.69
140 141 1.507562 TTTCACATCGAGCGCTTCAA 58.492 45.000 13.26 0.00 0.00 2.69
141 142 1.394572 CATTTCACATCGAGCGCTTCA 59.605 47.619 13.26 0.31 0.00 3.02
142 143 1.394917 ACATTTCACATCGAGCGCTTC 59.605 47.619 13.26 3.81 0.00 3.86
143 144 1.394917 GACATTTCACATCGAGCGCTT 59.605 47.619 13.26 0.00 0.00 4.68
144 145 1.002366 GACATTTCACATCGAGCGCT 58.998 50.000 11.27 11.27 0.00 5.92
145 146 0.026803 GGACATTTCACATCGAGCGC 59.973 55.000 0.00 0.00 0.00 5.92
146 147 1.590238 GAGGACATTTCACATCGAGCG 59.410 52.381 0.00 0.00 0.00 5.03
147 148 2.621338 TGAGGACATTTCACATCGAGC 58.379 47.619 0.00 0.00 0.00 5.03
148 149 3.061295 CGTTGAGGACATTTCACATCGAG 59.939 47.826 0.00 0.00 30.95 4.04
149 150 2.993220 CGTTGAGGACATTTCACATCGA 59.007 45.455 0.00 0.00 30.95 3.59
150 151 2.736721 ACGTTGAGGACATTTCACATCG 59.263 45.455 0.00 0.00 33.27 3.84
151 152 4.749245 AACGTTGAGGACATTTCACATC 57.251 40.909 0.00 0.00 0.00 3.06
152 153 5.514274 AAAACGTTGAGGACATTTCACAT 57.486 34.783 0.00 0.00 0.00 3.21
153 154 4.974368 AAAACGTTGAGGACATTTCACA 57.026 36.364 0.00 0.00 0.00 3.58
154 155 5.229260 GTGAAAAACGTTGAGGACATTTCAC 59.771 40.000 24.88 24.88 42.30 3.18
155 156 5.336744 GTGAAAAACGTTGAGGACATTTCA 58.663 37.500 14.74 14.74 34.93 2.69
156 157 5.866503 GTGAAAAACGTTGAGGACATTTC 57.133 39.130 0.00 6.98 0.00 2.17
170 171 6.255215 TCTGAAAGAACATCACGTGAAAAAC 58.745 36.000 24.13 14.22 42.31 2.43
171 172 6.429791 TCTGAAAGAACATCACGTGAAAAA 57.570 33.333 24.13 0.00 42.31 1.94
186 187 8.722480 ATGTTATGATCGATGTTTCTGAAAGA 57.278 30.769 0.54 2.36 44.68 2.52
188 189 9.045223 CCTATGTTATGATCGATGTTTCTGAAA 57.955 33.333 0.54 0.00 0.00 2.69
189 190 7.171508 GCCTATGTTATGATCGATGTTTCTGAA 59.828 37.037 0.54 0.00 0.00 3.02
190 191 6.646653 GCCTATGTTATGATCGATGTTTCTGA 59.353 38.462 0.54 0.00 0.00 3.27
191 192 6.424812 TGCCTATGTTATGATCGATGTTTCTG 59.575 38.462 0.54 0.00 0.00 3.02
192 193 6.425114 GTGCCTATGTTATGATCGATGTTTCT 59.575 38.462 0.54 0.00 0.00 2.52
193 194 6.202762 TGTGCCTATGTTATGATCGATGTTTC 59.797 38.462 0.54 0.00 0.00 2.78
194 195 6.017934 GTGTGCCTATGTTATGATCGATGTTT 60.018 38.462 0.54 0.00 0.00 2.83
195 196 5.466728 GTGTGCCTATGTTATGATCGATGTT 59.533 40.000 0.54 0.00 0.00 2.71
196 197 4.991056 GTGTGCCTATGTTATGATCGATGT 59.009 41.667 0.54 0.00 0.00 3.06
197 198 4.990426 TGTGTGCCTATGTTATGATCGATG 59.010 41.667 0.54 0.00 0.00 3.84
198 199 5.213891 TGTGTGCCTATGTTATGATCGAT 57.786 39.130 0.00 0.00 0.00 3.59
199 200 4.664150 TGTGTGCCTATGTTATGATCGA 57.336 40.909 0.00 0.00 0.00 3.59
200 201 7.413328 CCATTATGTGTGCCTATGTTATGATCG 60.413 40.741 0.00 0.00 0.00 3.69
201 202 7.627088 GCCATTATGTGTGCCTATGTTATGATC 60.627 40.741 0.00 0.00 0.00 2.92
202 203 6.151648 GCCATTATGTGTGCCTATGTTATGAT 59.848 38.462 0.00 0.00 0.00 2.45
203 204 5.473162 GCCATTATGTGTGCCTATGTTATGA 59.527 40.000 0.00 0.00 0.00 2.15
204 205 5.617529 CGCCATTATGTGTGCCTATGTTATG 60.618 44.000 0.00 0.00 0.00 1.90
205 206 4.455533 CGCCATTATGTGTGCCTATGTTAT 59.544 41.667 0.00 0.00 0.00 1.89
206 207 3.812609 CGCCATTATGTGTGCCTATGTTA 59.187 43.478 0.00 0.00 0.00 2.41
207 208 2.618241 CGCCATTATGTGTGCCTATGTT 59.382 45.455 0.00 0.00 0.00 2.71
208 209 2.221169 CGCCATTATGTGTGCCTATGT 58.779 47.619 0.00 0.00 0.00 2.29
209 210 1.536766 CCGCCATTATGTGTGCCTATG 59.463 52.381 0.00 0.00 0.00 2.23
210 211 1.419762 TCCGCCATTATGTGTGCCTAT 59.580 47.619 0.00 0.00 0.00 2.57
211 212 0.833949 TCCGCCATTATGTGTGCCTA 59.166 50.000 0.00 0.00 0.00 3.93
212 213 0.464373 CTCCGCCATTATGTGTGCCT 60.464 55.000 0.00 0.00 0.00 4.75
213 214 2.024918 CTCCGCCATTATGTGTGCC 58.975 57.895 0.00 0.00 0.00 5.01
214 215 1.097547 AGCTCCGCCATTATGTGTGC 61.098 55.000 0.00 0.00 0.00 4.57
215 216 1.382522 AAGCTCCGCCATTATGTGTG 58.617 50.000 0.00 0.00 0.00 3.82
216 217 2.838736 CTAAGCTCCGCCATTATGTGT 58.161 47.619 0.00 0.00 0.00 3.72
217 218 1.532868 GCTAAGCTCCGCCATTATGTG 59.467 52.381 0.00 0.00 0.00 3.21
218 219 1.417890 AGCTAAGCTCCGCCATTATGT 59.582 47.619 3.80 0.00 30.62 2.29
219 220 2.175878 AGCTAAGCTCCGCCATTATG 57.824 50.000 3.80 0.00 30.62 1.90
220 221 2.234908 CCTAGCTAAGCTCCGCCATTAT 59.765 50.000 0.00 0.00 40.44 1.28
221 222 1.618837 CCTAGCTAAGCTCCGCCATTA 59.381 52.381 0.00 0.00 40.44 1.90
222 223 0.394565 CCTAGCTAAGCTCCGCCATT 59.605 55.000 0.00 0.00 40.44 3.16
223 224 0.760945 ACCTAGCTAAGCTCCGCCAT 60.761 55.000 0.00 0.00 40.44 4.40
224 225 1.381327 ACCTAGCTAAGCTCCGCCA 60.381 57.895 0.00 0.00 40.44 5.69
225 226 1.364536 GACCTAGCTAAGCTCCGCC 59.635 63.158 0.00 0.00 40.44 6.13
226 227 0.676736 ATGACCTAGCTAAGCTCCGC 59.323 55.000 0.00 0.00 40.44 5.54
227 228 4.792521 ATTATGACCTAGCTAAGCTCCG 57.207 45.455 0.00 0.00 40.44 4.63
228 229 6.292150 ACAAATTATGACCTAGCTAAGCTCC 58.708 40.000 0.00 0.00 40.44 4.70
229 230 8.145122 ACTACAAATTATGACCTAGCTAAGCTC 58.855 37.037 0.00 0.00 40.44 4.09
230 231 8.024145 ACTACAAATTATGACCTAGCTAAGCT 57.976 34.615 0.00 0.00 43.41 3.74
231 232 7.115095 CGACTACAAATTATGACCTAGCTAAGC 59.885 40.741 0.00 0.00 0.00 3.09
232 233 7.115095 GCGACTACAAATTATGACCTAGCTAAG 59.885 40.741 0.00 0.00 0.00 2.18
233 234 6.921857 GCGACTACAAATTATGACCTAGCTAA 59.078 38.462 0.00 0.00 0.00 3.09
234 235 6.444633 GCGACTACAAATTATGACCTAGCTA 58.555 40.000 0.00 0.00 0.00 3.32
235 236 5.290386 GCGACTACAAATTATGACCTAGCT 58.710 41.667 0.00 0.00 0.00 3.32
236 237 4.448060 GGCGACTACAAATTATGACCTAGC 59.552 45.833 0.00 0.00 0.00 3.42
237 238 4.989168 GGGCGACTACAAATTATGACCTAG 59.011 45.833 0.00 0.00 0.00 3.02
238 239 4.202284 GGGGCGACTACAAATTATGACCTA 60.202 45.833 0.00 0.00 0.00 3.08
239 240 3.433173 GGGGCGACTACAAATTATGACCT 60.433 47.826 0.00 0.00 0.00 3.85
240 241 2.876550 GGGGCGACTACAAATTATGACC 59.123 50.000 0.00 0.00 0.00 4.02
241 242 2.876550 GGGGGCGACTACAAATTATGAC 59.123 50.000 0.00 0.00 0.00 3.06
242 243 3.202829 GGGGGCGACTACAAATTATGA 57.797 47.619 0.00 0.00 0.00 2.15
259 260 4.017126 GGAAGAAACTTATGAGTTGGGGG 58.983 47.826 3.30 0.00 45.18 5.40
260 261 4.017126 GGGAAGAAACTTATGAGTTGGGG 58.983 47.826 3.30 0.00 45.18 4.96
261 262 4.662278 TGGGAAGAAACTTATGAGTTGGG 58.338 43.478 3.30 0.00 45.18 4.12
262 263 6.648879 TTTGGGAAGAAACTTATGAGTTGG 57.351 37.500 3.30 0.00 45.18 3.77
263 264 8.115490 AGATTTGGGAAGAAACTTATGAGTTG 57.885 34.615 3.30 0.00 45.18 3.16
265 266 7.461749 TGAGATTTGGGAAGAAACTTATGAGT 58.538 34.615 0.00 0.00 37.87 3.41
266 267 7.928307 TGAGATTTGGGAAGAAACTTATGAG 57.072 36.000 0.00 0.00 0.00 2.90
267 268 8.884124 AATGAGATTTGGGAAGAAACTTATGA 57.116 30.769 0.00 0.00 0.00 2.15
268 269 9.933723 AAAATGAGATTTGGGAAGAAACTTATG 57.066 29.630 0.00 0.00 31.77 1.90
269 270 9.933723 CAAAATGAGATTTGGGAAGAAACTTAT 57.066 29.630 0.00 0.00 36.79 1.73
270 271 8.923270 ACAAAATGAGATTTGGGAAGAAACTTA 58.077 29.630 4.96 0.00 43.10 2.24
271 272 7.795047 ACAAAATGAGATTTGGGAAGAAACTT 58.205 30.769 4.96 0.00 43.10 2.66
272 273 7.365497 ACAAAATGAGATTTGGGAAGAAACT 57.635 32.000 4.96 0.00 43.10 2.66
273 274 8.337532 CAAACAAAATGAGATTTGGGAAGAAAC 58.662 33.333 4.96 0.00 43.10 2.78
274 275 7.012232 GCAAACAAAATGAGATTTGGGAAGAAA 59.988 33.333 4.96 0.00 43.10 2.52
275 276 6.482973 GCAAACAAAATGAGATTTGGGAAGAA 59.517 34.615 4.96 0.00 43.10 2.52
276 277 5.990996 GCAAACAAAATGAGATTTGGGAAGA 59.009 36.000 4.96 0.00 43.10 2.87
277 278 5.179929 GGCAAACAAAATGAGATTTGGGAAG 59.820 40.000 4.96 0.00 43.10 3.46
278 279 5.062528 GGCAAACAAAATGAGATTTGGGAA 58.937 37.500 4.96 0.00 43.10 3.97
279 280 4.640364 GGCAAACAAAATGAGATTTGGGA 58.360 39.130 4.96 0.00 43.10 4.37
280 281 3.432933 CGGCAAACAAAATGAGATTTGGG 59.567 43.478 4.96 0.00 43.10 4.12
281 282 3.120580 GCGGCAAACAAAATGAGATTTGG 60.121 43.478 0.00 0.00 43.10 3.28
282 283 3.120580 GGCGGCAAACAAAATGAGATTTG 60.121 43.478 3.07 0.00 44.11 2.32
283 284 3.066380 GGCGGCAAACAAAATGAGATTT 58.934 40.909 3.07 0.00 0.00 2.17
284 285 2.299867 AGGCGGCAAACAAAATGAGATT 59.700 40.909 13.08 0.00 0.00 2.40
285 286 1.895131 AGGCGGCAAACAAAATGAGAT 59.105 42.857 13.08 0.00 0.00 2.75
286 287 1.269448 GAGGCGGCAAACAAAATGAGA 59.731 47.619 13.08 0.00 0.00 3.27
287 288 1.669795 GGAGGCGGCAAACAAAATGAG 60.670 52.381 13.08 0.00 0.00 2.90
288 289 0.316841 GGAGGCGGCAAACAAAATGA 59.683 50.000 13.08 0.00 0.00 2.57
289 290 1.008361 CGGAGGCGGCAAACAAAATG 61.008 55.000 13.08 0.00 0.00 2.32
290 291 1.288752 CGGAGGCGGCAAACAAAAT 59.711 52.632 13.08 0.00 0.00 1.82
291 292 2.725008 CGGAGGCGGCAAACAAAA 59.275 55.556 13.08 0.00 0.00 2.44
292 293 3.972276 GCGGAGGCGGCAAACAAA 61.972 61.111 13.08 0.00 0.00 2.83
303 304 4.803908 GAGCTTTGGGGGCGGAGG 62.804 72.222 0.00 0.00 34.52 4.30
304 305 4.803908 GGAGCTTTGGGGGCGGAG 62.804 72.222 0.00 0.00 34.52 4.63
306 307 4.803908 GAGGAGCTTTGGGGGCGG 62.804 72.222 0.00 0.00 34.52 6.13
307 308 4.803908 GGAGGAGCTTTGGGGGCG 62.804 72.222 0.00 0.00 34.52 6.13
308 309 2.520657 AATGGAGGAGCTTTGGGGGC 62.521 60.000 0.00 0.00 0.00 5.80
309 310 0.685458 CAATGGAGGAGCTTTGGGGG 60.685 60.000 0.00 0.00 0.00 5.40
310 311 0.685458 CCAATGGAGGAGCTTTGGGG 60.685 60.000 4.90 0.00 35.93 4.96
311 312 0.332632 TCCAATGGAGGAGCTTTGGG 59.667 55.000 11.72 0.00 39.27 4.12
312 313 1.272092 TGTCCAATGGAGGAGCTTTGG 60.272 52.381 0.27 6.30 38.64 3.28
313 314 1.815003 GTGTCCAATGGAGGAGCTTTG 59.185 52.381 0.27 0.00 38.64 2.77
314 315 1.611673 CGTGTCCAATGGAGGAGCTTT 60.612 52.381 0.27 0.00 38.64 3.51
315 316 0.036010 CGTGTCCAATGGAGGAGCTT 60.036 55.000 0.27 0.00 38.64 3.74
316 317 1.599047 CGTGTCCAATGGAGGAGCT 59.401 57.895 0.27 0.00 38.64 4.09
317 318 2.109126 GCGTGTCCAATGGAGGAGC 61.109 63.158 0.27 4.54 38.64 4.70
318 319 1.021390 GTGCGTGTCCAATGGAGGAG 61.021 60.000 0.27 0.00 38.64 3.69
319 320 1.003839 GTGCGTGTCCAATGGAGGA 60.004 57.895 0.27 0.00 34.64 3.71
320 321 0.249120 TAGTGCGTGTCCAATGGAGG 59.751 55.000 0.27 0.00 29.39 4.30
321 322 1.732259 GTTAGTGCGTGTCCAATGGAG 59.268 52.381 0.27 0.00 29.39 3.86
322 323 1.070914 TGTTAGTGCGTGTCCAATGGA 59.929 47.619 0.00 0.00 0.00 3.41
323 324 1.518325 TGTTAGTGCGTGTCCAATGG 58.482 50.000 0.00 0.00 0.00 3.16
324 325 2.289274 TGTTGTTAGTGCGTGTCCAATG 59.711 45.455 0.00 0.00 0.00 2.82
325 326 2.289547 GTGTTGTTAGTGCGTGTCCAAT 59.710 45.455 0.00 0.00 0.00 3.16
326 327 1.666700 GTGTTGTTAGTGCGTGTCCAA 59.333 47.619 0.00 0.00 0.00 3.53
327 328 1.292061 GTGTTGTTAGTGCGTGTCCA 58.708 50.000 0.00 0.00 0.00 4.02
328 329 0.584876 GGTGTTGTTAGTGCGTGTCC 59.415 55.000 0.00 0.00 0.00 4.02
329 330 1.004292 GTGGTGTTGTTAGTGCGTGTC 60.004 52.381 0.00 0.00 0.00 3.67
330 331 1.011333 GTGGTGTTGTTAGTGCGTGT 58.989 50.000 0.00 0.00 0.00 4.49
331 332 0.042535 CGTGGTGTTGTTAGTGCGTG 60.043 55.000 0.00 0.00 0.00 5.34
332 333 1.768112 GCGTGGTGTTGTTAGTGCGT 61.768 55.000 0.00 0.00 0.00 5.24
333 334 1.083015 GCGTGGTGTTGTTAGTGCG 60.083 57.895 0.00 0.00 0.00 5.34
334 335 1.083015 CGCGTGGTGTTGTTAGTGC 60.083 57.895 0.00 0.00 0.00 4.40
335 336 1.083015 GCGCGTGGTGTTGTTAGTG 60.083 57.895 8.43 0.00 0.00 2.74
336 337 0.882927 ATGCGCGTGGTGTTGTTAGT 60.883 50.000 8.43 0.00 0.00 2.24
337 338 0.452618 CATGCGCGTGGTGTTGTTAG 60.453 55.000 22.09 0.00 0.00 2.34
338 339 1.571953 CATGCGCGTGGTGTTGTTA 59.428 52.632 22.09 0.00 0.00 2.41
339 340 2.331098 CATGCGCGTGGTGTTGTT 59.669 55.556 22.09 0.00 0.00 2.83
340 341 4.326766 GCATGCGCGTGGTGTTGT 62.327 61.111 29.57 0.00 0.00 3.32
341 342 4.325304 TGCATGCGCGTGGTGTTG 62.325 61.111 29.57 4.82 42.97 3.33
342 343 4.326766 GTGCATGCGCGTGGTGTT 62.327 61.111 29.57 0.00 42.97 3.32
344 345 4.450122 GAGTGCATGCGCGTGGTG 62.450 66.667 29.57 13.86 42.97 4.17
345 346 2.850806 TATGAGTGCATGCGCGTGGT 62.851 55.000 29.57 14.54 42.97 4.16
346 347 1.501337 ATATGAGTGCATGCGCGTGG 61.501 55.000 29.57 12.61 42.97 4.94
347 348 1.139163 TATATGAGTGCATGCGCGTG 58.861 50.000 25.25 25.25 42.97 5.34
348 349 1.995484 GATATATGAGTGCATGCGCGT 59.005 47.619 24.54 16.85 42.97 6.01
349 350 1.994779 TGATATATGAGTGCATGCGCG 59.005 47.619 24.54 0.00 42.97 6.86
350 351 2.094894 GGTGATATATGAGTGCATGCGC 59.905 50.000 23.64 23.64 35.94 6.09
351 352 3.593096 AGGTGATATATGAGTGCATGCG 58.407 45.455 14.09 0.00 35.94 4.73
352 353 5.526479 CCATAGGTGATATATGAGTGCATGC 59.474 44.000 11.82 11.82 35.94 4.06
353 354 6.881570 TCCATAGGTGATATATGAGTGCATG 58.118 40.000 0.00 0.00 35.94 4.06
354 355 7.365384 CCTTCCATAGGTGATATATGAGTGCAT 60.365 40.741 0.00 0.00 39.39 3.96
355 356 6.070596 CCTTCCATAGGTGATATATGAGTGCA 60.071 42.308 0.00 0.00 39.39 4.57
356 357 6.344500 CCTTCCATAGGTGATATATGAGTGC 58.656 44.000 0.00 0.00 39.39 4.40
357 358 6.155910 AGCCTTCCATAGGTGATATATGAGTG 59.844 42.308 0.00 0.00 46.61 3.51
358 359 6.155910 CAGCCTTCCATAGGTGATATATGAGT 59.844 42.308 0.00 0.00 46.61 3.41
359 360 6.407865 CCAGCCTTCCATAGGTGATATATGAG 60.408 46.154 0.00 0.00 46.61 2.90
360 361 5.426509 CCAGCCTTCCATAGGTGATATATGA 59.573 44.000 0.00 0.00 46.61 2.15
361 362 5.426509 TCCAGCCTTCCATAGGTGATATATG 59.573 44.000 0.00 0.00 46.61 1.78
362 363 5.603750 TCCAGCCTTCCATAGGTGATATAT 58.396 41.667 0.00 0.00 46.61 0.86
363 364 5.023514 TCCAGCCTTCCATAGGTGATATA 57.976 43.478 0.00 0.00 46.61 0.86
364 365 3.874316 TCCAGCCTTCCATAGGTGATAT 58.126 45.455 0.00 0.00 46.61 1.63
365 366 3.344535 TCCAGCCTTCCATAGGTGATA 57.655 47.619 0.00 0.00 46.61 2.15
366 367 2.196742 TCCAGCCTTCCATAGGTGAT 57.803 50.000 0.00 0.00 46.61 3.06
367 368 2.050144 GATCCAGCCTTCCATAGGTGA 58.950 52.381 0.00 0.00 46.61 4.02
368 369 1.270518 CGATCCAGCCTTCCATAGGTG 60.271 57.143 0.00 0.00 46.61 4.00
369 370 1.051812 CGATCCAGCCTTCCATAGGT 58.948 55.000 0.00 0.00 46.61 3.08
371 372 3.766591 ACTATCGATCCAGCCTTCCATAG 59.233 47.826 0.00 0.00 0.00 2.23
372 373 3.511540 CACTATCGATCCAGCCTTCCATA 59.488 47.826 0.00 0.00 0.00 2.74
373 374 2.301296 CACTATCGATCCAGCCTTCCAT 59.699 50.000 0.00 0.00 0.00 3.41
374 375 1.688735 CACTATCGATCCAGCCTTCCA 59.311 52.381 0.00 0.00 0.00 3.53
375 376 1.606737 GCACTATCGATCCAGCCTTCC 60.607 57.143 0.00 0.00 0.00 3.46
376 377 1.789506 GCACTATCGATCCAGCCTTC 58.210 55.000 0.00 0.00 0.00 3.46
377 378 0.032678 CGCACTATCGATCCAGCCTT 59.967 55.000 0.00 0.00 0.00 4.35
378 379 1.662608 CGCACTATCGATCCAGCCT 59.337 57.895 0.00 0.00 0.00 4.58
379 380 1.373497 CCGCACTATCGATCCAGCC 60.373 63.158 0.00 0.00 0.00 4.85
380 381 0.387878 CTCCGCACTATCGATCCAGC 60.388 60.000 0.00 3.34 0.00 4.85
381 382 0.387878 GCTCCGCACTATCGATCCAG 60.388 60.000 0.00 0.00 0.00 3.86
382 383 0.823769 AGCTCCGCACTATCGATCCA 60.824 55.000 0.00 0.00 0.00 3.41
383 384 0.315568 AAGCTCCGCACTATCGATCC 59.684 55.000 0.00 0.00 0.00 3.36
384 385 2.141535 AAAGCTCCGCACTATCGATC 57.858 50.000 0.00 0.00 0.00 3.69
385 386 3.553096 CCTTAAAGCTCCGCACTATCGAT 60.553 47.826 2.16 2.16 0.00 3.59
386 387 2.223735 CCTTAAAGCTCCGCACTATCGA 60.224 50.000 0.00 0.00 0.00 3.59
387 388 2.128035 CCTTAAAGCTCCGCACTATCG 58.872 52.381 0.00 0.00 0.00 2.92
388 389 3.180891 ACCTTAAAGCTCCGCACTATC 57.819 47.619 0.00 0.00 0.00 2.08
389 390 3.055385 TCAACCTTAAAGCTCCGCACTAT 60.055 43.478 0.00 0.00 0.00 2.12
390 391 2.300723 TCAACCTTAAAGCTCCGCACTA 59.699 45.455 0.00 0.00 0.00 2.74
391 392 1.071699 TCAACCTTAAAGCTCCGCACT 59.928 47.619 0.00 0.00 0.00 4.40
392 393 1.464997 CTCAACCTTAAAGCTCCGCAC 59.535 52.381 0.00 0.00 0.00 5.34
393 394 1.346395 TCTCAACCTTAAAGCTCCGCA 59.654 47.619 0.00 0.00 0.00 5.69
394 395 2.094762 TCTCAACCTTAAAGCTCCGC 57.905 50.000 0.00 0.00 0.00 5.54
395 396 4.065789 ACTTTCTCAACCTTAAAGCTCCG 58.934 43.478 0.00 0.00 34.31 4.63
396 397 5.049336 GTGACTTTCTCAACCTTAAAGCTCC 60.049 44.000 0.00 0.00 34.31 4.70
397 398 5.049336 GGTGACTTTCTCAACCTTAAAGCTC 60.049 44.000 0.00 0.00 34.31 4.09
398 399 4.822350 GGTGACTTTCTCAACCTTAAAGCT 59.178 41.667 0.00 0.00 34.31 3.74
399 400 4.578928 TGGTGACTTTCTCAACCTTAAAGC 59.421 41.667 0.00 0.00 35.43 3.51
400 401 6.486657 TCATGGTGACTTTCTCAACCTTAAAG 59.513 38.462 0.00 0.00 35.43 1.85
401 402 6.361433 TCATGGTGACTTTCTCAACCTTAAA 58.639 36.000 0.00 0.00 35.43 1.52
402 403 5.935945 TCATGGTGACTTTCTCAACCTTAA 58.064 37.500 0.00 0.00 35.43 1.85
403 404 5.560722 TCATGGTGACTTTCTCAACCTTA 57.439 39.130 0.00 0.00 35.43 2.69
404 405 4.437682 TCATGGTGACTTTCTCAACCTT 57.562 40.909 0.00 0.00 35.43 3.50
405 406 4.137543 GTTCATGGTGACTTTCTCAACCT 58.862 43.478 0.00 0.00 35.43 3.50
406 407 3.882888 TGTTCATGGTGACTTTCTCAACC 59.117 43.478 0.00 0.00 35.43 3.77
407 408 4.261197 GGTGTTCATGGTGACTTTCTCAAC 60.261 45.833 0.00 0.00 37.08 3.18
408 409 3.882888 GGTGTTCATGGTGACTTTCTCAA 59.117 43.478 0.00 0.00 0.00 3.02
409 410 3.136443 AGGTGTTCATGGTGACTTTCTCA 59.864 43.478 0.00 0.00 0.00 3.27
410 411 3.744660 AGGTGTTCATGGTGACTTTCTC 58.255 45.455 0.00 0.00 0.00 2.87
411 412 3.864789 AGGTGTTCATGGTGACTTTCT 57.135 42.857 0.00 0.00 0.00 2.52
412 413 4.642429 ACTAGGTGTTCATGGTGACTTTC 58.358 43.478 0.00 0.00 0.00 2.62
413 414 4.706842 ACTAGGTGTTCATGGTGACTTT 57.293 40.909 0.00 0.00 0.00 2.66
414 415 4.706842 AACTAGGTGTTCATGGTGACTT 57.293 40.909 0.00 0.00 32.63 3.01
415 416 5.394224 CGATAACTAGGTGTTCATGGTGACT 60.394 44.000 0.00 0.00 39.89 3.41
416 417 4.804139 CGATAACTAGGTGTTCATGGTGAC 59.196 45.833 0.00 0.00 39.89 3.67
417 418 4.707934 TCGATAACTAGGTGTTCATGGTGA 59.292 41.667 0.00 0.00 39.89 4.02
418 419 4.804139 GTCGATAACTAGGTGTTCATGGTG 59.196 45.833 0.00 0.00 39.89 4.17
419 420 4.439700 CGTCGATAACTAGGTGTTCATGGT 60.440 45.833 0.00 0.00 39.89 3.55
420 421 4.042398 CGTCGATAACTAGGTGTTCATGG 58.958 47.826 0.00 0.00 39.89 3.66
421 422 4.042398 CCGTCGATAACTAGGTGTTCATG 58.958 47.826 0.00 0.00 39.89 3.07
422 423 3.067742 CCCGTCGATAACTAGGTGTTCAT 59.932 47.826 0.00 0.00 39.89 2.57
423 424 2.424601 CCCGTCGATAACTAGGTGTTCA 59.575 50.000 0.00 0.00 39.89 3.18
424 425 2.684881 TCCCGTCGATAACTAGGTGTTC 59.315 50.000 0.00 0.00 39.89 3.18
425 426 2.726821 TCCCGTCGATAACTAGGTGTT 58.273 47.619 0.00 0.00 42.31 3.32
426 427 2.425143 TCCCGTCGATAACTAGGTGT 57.575 50.000 0.00 0.00 0.00 4.16
427 428 3.067742 ACATTCCCGTCGATAACTAGGTG 59.932 47.826 0.00 0.00 0.00 4.00
428 429 3.294214 ACATTCCCGTCGATAACTAGGT 58.706 45.455 0.00 0.00 0.00 3.08
429 430 4.049186 CAACATTCCCGTCGATAACTAGG 58.951 47.826 0.00 0.00 0.00 3.02
430 431 3.489785 GCAACATTCCCGTCGATAACTAG 59.510 47.826 0.00 0.00 0.00 2.57
431 432 3.450578 GCAACATTCCCGTCGATAACTA 58.549 45.455 0.00 0.00 0.00 2.24
432 433 2.277084 GCAACATTCCCGTCGATAACT 58.723 47.619 0.00 0.00 0.00 2.24
433 434 1.329599 GGCAACATTCCCGTCGATAAC 59.670 52.381 0.00 0.00 0.00 1.89
434 435 1.208535 AGGCAACATTCCCGTCGATAA 59.791 47.619 0.00 0.00 41.41 1.75
435 436 0.828022 AGGCAACATTCCCGTCGATA 59.172 50.000 0.00 0.00 41.41 2.92
436 437 0.462047 GAGGCAACATTCCCGTCGAT 60.462 55.000 0.00 0.00 41.41 3.59
437 438 1.079405 GAGGCAACATTCCCGTCGA 60.079 57.895 0.00 0.00 41.41 4.20
438 439 0.673644 AAGAGGCAACATTCCCGTCG 60.674 55.000 0.00 0.00 41.41 5.12
439 440 2.396590 TAAGAGGCAACATTCCCGTC 57.603 50.000 0.00 0.00 41.41 4.79
440 441 3.366052 AATAAGAGGCAACATTCCCGT 57.634 42.857 0.00 0.00 41.41 5.28
441 442 5.828299 TTTAATAAGAGGCAACATTCCCG 57.172 39.130 0.00 0.00 41.41 5.14
462 463 8.406297 GGCTTCTCATTAACGAGGATTATTTTT 58.594 33.333 0.00 0.00 33.59 1.94
463 464 7.556275 TGGCTTCTCATTAACGAGGATTATTTT 59.444 33.333 0.00 0.00 33.59 1.82
464 465 7.054124 TGGCTTCTCATTAACGAGGATTATTT 58.946 34.615 0.00 0.00 33.59 1.40
465 466 6.591935 TGGCTTCTCATTAACGAGGATTATT 58.408 36.000 0.00 0.00 33.59 1.40
466 467 6.174720 TGGCTTCTCATTAACGAGGATTAT 57.825 37.500 0.00 0.00 33.59 1.28
467 468 5.607939 TGGCTTCTCATTAACGAGGATTA 57.392 39.130 0.00 0.00 33.59 1.75
468 469 4.487714 TGGCTTCTCATTAACGAGGATT 57.512 40.909 0.00 0.00 33.59 3.01
469 470 4.487714 TTGGCTTCTCATTAACGAGGAT 57.512 40.909 0.00 0.00 33.59 3.24
470 471 3.973206 TTGGCTTCTCATTAACGAGGA 57.027 42.857 0.00 0.00 33.59 3.71
471 472 4.672801 GCTTTTGGCTTCTCATTAACGAGG 60.673 45.833 0.00 0.00 38.06 4.63
472 473 4.406943 GCTTTTGGCTTCTCATTAACGAG 58.593 43.478 0.00 0.00 38.06 4.18
473 474 4.419522 GCTTTTGGCTTCTCATTAACGA 57.580 40.909 0.00 0.00 38.06 3.85
486 487 3.598019 TGGATGATTGAAGCTTTTGGC 57.402 42.857 0.00 0.00 42.19 4.52
487 488 4.687483 GTGTTGGATGATTGAAGCTTTTGG 59.313 41.667 0.00 0.00 0.00 3.28
488 489 5.404366 CAGTGTTGGATGATTGAAGCTTTTG 59.596 40.000 0.00 0.00 0.00 2.44
489 490 5.069516 ACAGTGTTGGATGATTGAAGCTTTT 59.930 36.000 0.00 0.00 0.00 2.27
490 491 4.586001 ACAGTGTTGGATGATTGAAGCTTT 59.414 37.500 0.00 0.00 0.00 3.51
491 492 4.147321 ACAGTGTTGGATGATTGAAGCTT 58.853 39.130 0.00 0.00 0.00 3.74
492 493 3.759581 ACAGTGTTGGATGATTGAAGCT 58.240 40.909 0.00 0.00 0.00 3.74
493 494 5.575957 CATACAGTGTTGGATGATTGAAGC 58.424 41.667 0.00 0.00 46.83 3.86
501 502 5.649395 AGGACATTTCATACAGTGTTGGATG 59.351 40.000 0.00 0.00 45.49 3.51
502 503 5.819991 AGGACATTTCATACAGTGTTGGAT 58.180 37.500 0.00 0.00 0.00 3.41
503 504 5.241403 AGGACATTTCATACAGTGTTGGA 57.759 39.130 0.00 0.00 0.00 3.53
504 505 4.396166 GGAGGACATTTCATACAGTGTTGG 59.604 45.833 0.00 0.00 0.00 3.77
505 506 4.093408 CGGAGGACATTTCATACAGTGTTG 59.907 45.833 0.00 0.00 0.00 3.33
506 507 4.253685 CGGAGGACATTTCATACAGTGTT 58.746 43.478 0.00 0.00 0.00 3.32
507 508 3.861840 CGGAGGACATTTCATACAGTGT 58.138 45.455 0.00 0.00 0.00 3.55
581 582 1.588674 CGGTGCTTGTGTCCAGTAAA 58.411 50.000 0.00 0.00 0.00 2.01
586 587 2.280797 GAGCGGTGCTTGTGTCCA 60.281 61.111 0.00 0.00 39.88 4.02
587 588 3.414700 CGAGCGGTGCTTGTGTCC 61.415 66.667 0.00 0.00 39.88 4.02
660 661 2.039951 TCGGTAGAGGGTTGGGGG 59.960 66.667 0.00 0.00 0.00 5.40
662 663 1.305887 AGGTCGGTAGAGGGTTGGG 60.306 63.158 0.00 0.00 0.00 4.12
689 690 4.884164 CCGGCTGAAAAGAAGGAGATAAAT 59.116 41.667 0.00 0.00 0.00 1.40
739 740 3.414700 GGCACTGCAACGAGACCG 61.415 66.667 2.82 0.00 42.50 4.79
741 742 0.880278 TCAAGGCACTGCAACGAGAC 60.880 55.000 2.82 0.00 40.86 3.36
830 831 1.140052 ACGGGTCTTGACATGTGTGAA 59.860 47.619 1.15 0.00 0.00 3.18
1252 1259 2.351924 ACGCAGTTGAACCCCATGGT 62.352 55.000 11.73 0.00 44.84 3.55
1458 1465 8.802267 ACCAACACAAATTAAGTGCACTATTAT 58.198 29.630 22.01 10.93 40.59 1.28
1459 1466 8.079203 CACCAACACAAATTAAGTGCACTATTA 58.921 33.333 22.01 7.01 40.59 0.98
1460 1467 6.922957 CACCAACACAAATTAAGTGCACTATT 59.077 34.615 22.01 14.42 40.59 1.73
1468 1475 6.811170 CAGTTTGACACCAACACAAATTAAGT 59.189 34.615 0.00 0.00 36.25 2.24
1775 1782 7.275920 TCTAATCAGGATAGGAGAAAAAGCAC 58.724 38.462 0.00 0.00 0.00 4.40
1777 1784 7.330700 CGATCTAATCAGGATAGGAGAAAAAGC 59.669 40.741 0.00 0.00 0.00 3.51
1778 1785 8.580720 TCGATCTAATCAGGATAGGAGAAAAAG 58.419 37.037 0.00 0.00 0.00 2.27
1802 1809 7.707774 AATTTTGGTTTGGTTTTAGTGATCG 57.292 32.000 0.00 0.00 0.00 3.69
1845 1855 3.797256 GGAATAGGATCGTCAGTTCAACG 59.203 47.826 0.00 0.00 41.39 4.10
1882 1892 4.662145 GCATTTGAGACTTTTATCACCGG 58.338 43.478 0.00 0.00 0.00 5.28
2084 2106 4.082523 TGCCTGCTGGACGGCTAC 62.083 66.667 14.77 0.00 46.42 3.58
2099 2121 2.420642 TCACTGAAAGACTGATGCTGC 58.579 47.619 0.00 0.00 37.43 5.25
2131 2158 2.225066 ACGAAGGAGGAAGGACTACTGT 60.225 50.000 0.00 0.00 30.23 3.55
2132 2159 2.164624 CACGAAGGAGGAAGGACTACTG 59.835 54.545 0.00 0.00 30.23 2.74
2133 2160 2.225066 ACACGAAGGAGGAAGGACTACT 60.225 50.000 0.00 0.00 31.32 2.57
2134 2161 2.094649 CACACGAAGGAGGAAGGACTAC 60.095 54.545 0.00 0.00 0.00 2.73
2135 2162 2.168496 CACACGAAGGAGGAAGGACTA 58.832 52.381 0.00 0.00 0.00 2.59
2136 2163 0.969894 CACACGAAGGAGGAAGGACT 59.030 55.000 0.00 0.00 0.00 3.85
2137 2164 0.670854 GCACACGAAGGAGGAAGGAC 60.671 60.000 0.00 0.00 0.00 3.85
2138 2165 0.832135 AGCACACGAAGGAGGAAGGA 60.832 55.000 0.00 0.00 0.00 3.36
2139 2166 0.390472 GAGCACACGAAGGAGGAAGG 60.390 60.000 0.00 0.00 0.00 3.46
2140 2167 0.390472 GGAGCACACGAAGGAGGAAG 60.390 60.000 0.00 0.00 0.00 3.46
2141 2168 1.671742 GGAGCACACGAAGGAGGAA 59.328 57.895 0.00 0.00 0.00 3.36
2142 2169 2.636412 CGGAGCACACGAAGGAGGA 61.636 63.158 0.00 0.00 0.00 3.71
2143 2170 2.125912 CGGAGCACACGAAGGAGG 60.126 66.667 0.00 0.00 0.00 4.30
2144 2171 2.125912 CCGGAGCACACGAAGGAG 60.126 66.667 0.00 0.00 0.00 3.69
2153 2180 2.202987 CTCATGCCTCCGGAGCAC 60.203 66.667 26.87 19.74 44.40 4.40
2186 2214 3.971245 TTGTCCCTTTTGCAGTTTTGT 57.029 38.095 0.00 0.00 0.00 2.83
2192 2220 1.043022 AGGCTTTGTCCCTTTTGCAG 58.957 50.000 0.00 0.00 0.00 4.41
2193 2221 2.238521 CTAGGCTTTGTCCCTTTTGCA 58.761 47.619 0.00 0.00 33.88 4.08
2194 2222 2.239400 ACTAGGCTTTGTCCCTTTTGC 58.761 47.619 0.00 0.00 33.88 3.68
2195 2223 5.070685 AGTAACTAGGCTTTGTCCCTTTTG 58.929 41.667 0.00 0.00 33.88 2.44
2196 2224 5.314529 GAGTAACTAGGCTTTGTCCCTTTT 58.685 41.667 0.00 0.00 33.88 2.27
2197 2225 4.263374 GGAGTAACTAGGCTTTGTCCCTTT 60.263 45.833 0.00 0.00 33.88 3.11
2198 2226 3.263681 GGAGTAACTAGGCTTTGTCCCTT 59.736 47.826 0.00 0.00 33.88 3.95
2199 2227 2.838813 GGAGTAACTAGGCTTTGTCCCT 59.161 50.000 0.00 0.00 36.47 4.20
2261 2297 1.374631 TGCATCGTCAGTGTCAGCC 60.375 57.895 0.00 0.00 0.00 4.85
2262 2298 1.784062 GTGCATCGTCAGTGTCAGC 59.216 57.895 0.00 0.00 0.00 4.26
2263 2299 0.387239 TCGTGCATCGTCAGTGTCAG 60.387 55.000 8.22 0.00 40.80 3.51
2276 2327 1.005512 ATGTACCTGCGTTCGTGCA 60.006 52.632 0.00 0.00 43.95 4.57
2352 2412 2.035442 GTTGTCGAAGCTGAGGCCC 61.035 63.158 0.00 0.00 39.73 5.80
2550 2610 3.068881 CTGAGGAAGACCGGCCAA 58.931 61.111 0.00 0.00 41.83 4.52
2592 2652 2.181521 GTTGTCGTTGGCGTTCCCA 61.182 57.895 0.00 0.00 43.51 4.37
2595 2655 2.247267 CGGTTGTCGTTGGCGTTC 59.753 61.111 0.00 0.00 39.49 3.95
2826 2886 2.166664 GGGTAAGACGAACAGAGCAGAT 59.833 50.000 0.00 0.00 0.00 2.90
3014 3075 3.674050 TACTCCCAGGCCTCCGTCC 62.674 68.421 0.00 0.00 0.00 4.79
3015 3076 2.043248 TACTCCCAGGCCTCCGTC 60.043 66.667 0.00 0.00 0.00 4.79
3126 3187 1.731613 GGACATGTCGTCGTCGCAA 60.732 57.895 19.33 0.00 46.42 4.85
3220 3281 3.589881 GAGCATGCCACGGCCATC 61.590 66.667 15.66 0.00 41.09 3.51
3221 3282 4.119363 AGAGCATGCCACGGCCAT 62.119 61.111 15.66 0.00 41.09 4.40
3337 3398 2.236223 CTCCTCGTGCTGCTCACCAT 62.236 60.000 0.00 0.00 42.69 3.55
3479 3540 1.449601 GGCGCCTTTGCAGCTAGTA 60.450 57.895 22.15 0.00 37.25 1.82
3480 3541 2.747855 GGCGCCTTTGCAGCTAGT 60.748 61.111 22.15 0.00 37.25 2.57
3481 3542 3.869272 CGGCGCCTTTGCAGCTAG 61.869 66.667 26.68 0.00 37.25 3.42
3527 3588 7.661968 TCTGAACTCTGAAGGATATTATTCCG 58.338 38.462 0.05 0.00 40.94 4.30
3692 3753 4.449743 GTGTTTTCTGTGTCGTTATGGCTA 59.550 41.667 0.00 0.00 0.00 3.93
3723 3784 0.247379 GTCGTGTTTTCGTGTGCGTT 60.247 50.000 0.00 0.00 39.49 4.84
3746 3807 7.617041 AGAAGTATGTTCTTTCTTACCATGC 57.383 36.000 0.00 0.00 0.00 4.06
3775 3836 3.454371 AATAATTACTCTGCTCGCCGT 57.546 42.857 0.00 0.00 0.00 5.68
3779 3840 6.478344 AGCTTCAGAAATAATTACTCTGCTCG 59.522 38.462 16.53 10.61 37.17 5.03
4063 4124 1.618837 GGGGCGTATTCATCTGCTAGA 59.381 52.381 0.00 0.00 0.00 2.43
4233 4294 8.939929 TCATATTCTCACAGAAACAGTCATTTC 58.060 33.333 0.00 0.00 37.82 2.17
4250 4311 9.036671 GTTGAGCCTAGTTTACTTCATATTCTC 57.963 37.037 0.00 0.00 0.00 2.87
4312 4373 2.917933 TCATTCTGGTTAATGGAGCCG 58.082 47.619 0.00 0.00 37.44 5.52
4339 4400 1.696884 TGTTGAGACTGTATGGGTGCA 59.303 47.619 0.00 0.00 0.00 4.57
4343 4404 6.403636 GCTTACATTTGTTGAGACTGTATGGG 60.404 42.308 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.