Multiple sequence alignment - TraesCS2A01G323900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G323900 chr2A 100.000 6275 0 0 1 6275 554105427 554099153 0.000000e+00 11588.0
1 TraesCS2A01G323900 chr2A 73.366 612 140 21 4505 5106 581164893 581164295 8.250000e-49 206.0
2 TraesCS2A01G323900 chr2A 74.468 517 111 18 4600 5107 744331424 744331928 2.970000e-48 204.0
3 TraesCS2A01G323900 chr2A 74.510 306 73 4 2934 3234 554100532 554100227 1.840000e-25 128.0
4 TraesCS2A01G323900 chr2A 74.510 306 73 5 4896 5201 554102494 554102194 1.840000e-25 128.0
5 TraesCS2A01G323900 chr2A 80.851 141 23 3 2956 3094 744331742 744331880 2.390000e-19 108.0
6 TraesCS2A01G323900 chr2A 76.316 190 37 6 2956 3141 581164480 581164295 1.860000e-15 95.3
7 TraesCS2A01G323900 chr2A 83.824 68 9 2 5534 5600 18619368 18619302 5.250000e-06 63.9
8 TraesCS2A01G323900 chr2B 94.739 5341 198 38 75 5377 511131682 511136977 0.000000e+00 8229.0
9 TraesCS2A01G323900 chr2B 95.798 119 4 1 5671 5788 511136970 511137088 2.310000e-44 191.0
10 TraesCS2A01G323900 chr2B 74.828 290 70 2 2934 3220 511136495 511136784 1.840000e-25 128.0
11 TraesCS2A01G323900 chr2B 91.667 72 6 0 5528 5599 719560219 719560290 4.000000e-17 100.0
12 TraesCS2A01G323900 chr2B 100.000 29 0 0 5762 5790 380507386 380507414 3.000000e-03 54.7
13 TraesCS2A01G323900 chr2D 93.824 4793 184 48 622 5376 432851589 432856307 0.000000e+00 7108.0
14 TraesCS2A01G323900 chr2D 85.714 616 56 22 1 600 432846472 432847071 6.910000e-174 621.0
15 TraesCS2A01G323900 chr2D 94.783 115 4 2 5671 5784 432856301 432856414 1.800000e-40 178.0
16 TraesCS2A01G323900 chr2D 92.079 101 6 2 6177 6275 432865263 432865363 2.360000e-29 141.0
17 TraesCS2A01G323900 chr2D 75.093 269 64 2 2955 3220 432855849 432856117 8.540000e-24 122.0
18 TraesCS2A01G323900 chr2D 82.857 105 11 5 5390 5491 486333189 486333089 3.120000e-13 87.9
19 TraesCS2A01G323900 chr2D 94.286 35 1 1 5763 5796 196791248 196791282 1.100000e-02 52.8
20 TraesCS2A01G323900 chr5A 84.720 517 49 11 3893 4402 28656579 28656086 2.030000e-134 490.0
21 TraesCS2A01G323900 chr1A 78.652 534 90 15 5761 6275 569137537 569137009 3.630000e-87 333.0
22 TraesCS2A01G323900 chr1A 81.923 260 44 2 4886 5145 64599482 64599738 3.810000e-52 217.0
23 TraesCS2A01G323900 chr1A 80.315 254 48 2 2955 3207 64599513 64599765 2.310000e-44 191.0
24 TraesCS2A01G323900 chr1A 87.671 73 7 2 5528 5599 407134156 407134085 4.030000e-12 84.2
25 TraesCS2A01G323900 chr4D 79.683 379 50 9 5896 6272 465057607 465057960 1.350000e-61 248.0
26 TraesCS2A01G323900 chr4D 90.909 88 8 0 5383 5470 102535418 102535331 1.110000e-22 119.0
27 TraesCS2A01G323900 chr4D 89.873 79 8 0 5390 5468 308327438 308327360 1.110000e-17 102.0
28 TraesCS2A01G323900 chr4B 78.571 392 54 11 5881 6270 237141479 237141116 1.360000e-56 231.0
29 TraesCS2A01G323900 chr1D 83.966 237 38 0 6036 6272 442683685 442683921 1.760000e-55 228.0
30 TraesCS2A01G323900 chr1D 80.769 260 47 2 4886 5145 66096326 66096582 3.840000e-47 200.0
31 TraesCS2A01G323900 chr1D 78.740 254 52 2 2957 3209 66096359 66096611 1.080000e-37 169.0
32 TraesCS2A01G323900 chr1D 88.750 80 9 0 5390 5469 445668755 445668676 1.440000e-16 99.0
33 TraesCS2A01G323900 chr1D 93.333 45 2 1 5478 5521 487737619 487737663 1.460000e-06 65.8
34 TraesCS2A01G323900 chr1B 80.077 261 47 4 4886 5145 106684881 106685137 8.300000e-44 189.0
35 TraesCS2A01G323900 chr1B 81.720 186 34 0 2957 3142 106684914 106685099 8.420000e-34 156.0
36 TraesCS2A01G323900 chr1B 84.722 72 11 0 5528 5599 94187987 94188058 8.730000e-09 73.1
37 TraesCS2A01G323900 chr5B 92.857 84 6 0 5386 5469 350408377 350408294 8.540000e-24 122.0
38 TraesCS2A01G323900 chr7A 95.455 66 3 0 5534 5599 299256412 299256347 8.600000e-19 106.0
39 TraesCS2A01G323900 chr7A 90.476 63 6 0 5537 5599 80430214 80430276 4.030000e-12 84.2
40 TraesCS2A01G323900 chr7A 86.885 61 8 0 5607 5667 661271451 661271391 1.130000e-07 69.4
41 TraesCS2A01G323900 chr3A 90.123 81 8 0 5390 5470 47845616 47845696 8.600000e-19 106.0
42 TraesCS2A01G323900 chr3A 87.952 83 10 0 5387 5469 385554735 385554817 1.440000e-16 99.0
43 TraesCS2A01G323900 chr3A 87.013 77 8 1 5911 5985 698354251 698354327 1.120000e-12 86.1
44 TraesCS2A01G323900 chr5D 89.024 82 9 0 5387 5468 217756895 217756976 1.110000e-17 102.0
45 TraesCS2A01G323900 chr6D 91.667 72 6 0 5528 5599 89735460 89735389 4.000000e-17 100.0
46 TraesCS2A01G323900 chr6D 92.188 64 5 0 5537 5600 73782987 73782924 2.410000e-14 91.6
47 TraesCS2A01G323900 chr6D 88.889 63 7 0 5537 5599 468068575 468068513 1.880000e-10 78.7
48 TraesCS2A01G323900 chr7D 88.750 80 9 0 5390 5469 622568381 622568302 1.440000e-16 99.0
49 TraesCS2A01G323900 chr7D 86.364 66 8 1 5618 5682 480830063 480830128 3.140000e-08 71.3
50 TraesCS2A01G323900 chr4A 96.610 59 1 1 5608 5666 108770903 108770960 5.180000e-16 97.1
51 TraesCS2A01G323900 chr3B 84.112 107 10 4 5387 5491 185549454 185549555 5.180000e-16 97.1
52 TraesCS2A01G323900 chr7B 89.706 68 6 1 5607 5673 724809889 724809956 1.120000e-12 86.1
53 TraesCS2A01G323900 chr6A 94.444 54 3 0 5617 5670 64322422 64322369 4.030000e-12 84.2
54 TraesCS2A01G323900 chr6A 100.000 28 0 0 5762 5789 596681188 596681161 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G323900 chr2A 554099153 554105427 6274 True 11588.000000 11588 100.000 1 6275 1 chr2A.!!$R2 6274
1 TraesCS2A01G323900 chr2B 511131682 511137088 5406 False 2849.333333 8229 88.455 75 5788 3 chr2B.!!$F3 5713
2 TraesCS2A01G323900 chr2D 432851589 432856414 4825 False 2469.333333 7108 87.900 622 5784 3 chr2D.!!$F4 5162
3 TraesCS2A01G323900 chr2D 432846472 432847071 599 False 621.000000 621 85.714 1 600 1 chr2D.!!$F2 599
4 TraesCS2A01G323900 chr1A 569137009 569137537 528 True 333.000000 333 78.652 5761 6275 1 chr1A.!!$R2 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 366 0.036732 ATCGTTGGTGTGGACATGCT 59.963 50.0 0.00 0.00 0.00 3.79 F
1263 1291 0.614697 TACTCCACTGGCTAGCAGCA 60.615 55.0 18.24 5.21 44.75 4.41 F
2243 2304 0.112995 AGCAATTCAACCTCAGCCCA 59.887 50.0 0.00 0.00 0.00 5.36 F
2244 2305 0.244721 GCAATTCAACCTCAGCCCAC 59.755 55.0 0.00 0.00 0.00 4.61 F
4172 4238 0.176680 CCGAGGAAGGACACCATGAG 59.823 60.0 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1344 1376 0.458543 AGCGCGAACTGATACCACAG 60.459 55.000 12.1 0.0 42.78 3.66 R
2446 2511 1.068474 CACGTCCTTGAACACGATCC 58.932 55.000 0.0 0.0 39.38 3.36 R
4152 4218 0.252057 TCATGGTGTCCTTCCTCGGA 60.252 55.000 0.0 0.0 0.00 4.55 R
4191 4257 2.195567 GCACAGGCACAGGCAGAAA 61.196 57.895 0.0 0.0 43.71 2.52 R
5584 5652 0.029300 CAACAGCGAACCAACCTGTG 59.971 55.000 0.0 0.0 39.56 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.499048 CGGTGTACATGATAGATACGCC 58.501 50.000 0.00 6.33 43.22 5.68
60 61 8.509690 TGTACATGATAGATACGCCTACTAAAC 58.490 37.037 0.00 0.00 0.00 2.01
72 73 5.698089 ACGCCTACTAAACCTTTTTAGACAC 59.302 40.000 10.41 0.00 44.99 3.67
76 77 8.573885 GCCTACTAAACCTTTTTAGACACAAAT 58.426 33.333 10.41 0.00 44.99 2.32
114 117 1.135859 CATGCAACGCTGTCTTTCTCC 60.136 52.381 0.00 0.00 0.00 3.71
153 156 6.767524 TGACAAGTTAAACACCAAACAGAT 57.232 33.333 0.00 0.00 0.00 2.90
190 193 0.886490 ACTTGTGCTCAAAGGCCTCG 60.886 55.000 5.23 0.00 32.87 4.63
219 222 5.463724 AGAAAATGGCGAGATCTTTCGATAC 59.536 40.000 8.43 0.00 43.03 2.24
224 227 2.608261 GCGAGATCTTTCGATACCCCAG 60.608 54.545 8.43 0.00 43.03 4.45
238 241 1.003928 ACCCCAGGTCCGTAATCAAAC 59.996 52.381 0.00 0.00 0.00 2.93
273 276 6.291637 CGGAATATGATAACCGCGATTCATAC 60.292 42.308 8.23 4.11 38.98 2.39
283 286 2.755650 GCGATTCATACTCCGGTTCAT 58.244 47.619 0.00 0.00 0.00 2.57
293 296 2.290008 ACTCCGGTTCATATTGTGTGCA 60.290 45.455 0.00 0.00 0.00 4.57
296 301 2.453080 CGGTTCATATTGTGTGCATGC 58.547 47.619 11.82 11.82 0.00 4.06
340 345 2.285083 CACTGTTTTCCTGTTCCACGA 58.715 47.619 0.00 0.00 0.00 4.35
356 361 2.738147 CGAGATCGTTGGTGTGGAC 58.262 57.895 0.00 0.00 34.11 4.02
357 362 0.038618 CGAGATCGTTGGTGTGGACA 60.039 55.000 0.00 0.00 34.11 4.02
359 364 2.002586 GAGATCGTTGGTGTGGACATG 58.997 52.381 0.00 0.00 0.00 3.21
360 365 0.447801 GATCGTTGGTGTGGACATGC 59.552 55.000 0.00 0.00 0.00 4.06
361 366 0.036732 ATCGTTGGTGTGGACATGCT 59.963 50.000 0.00 0.00 0.00 3.79
377 382 2.393768 GCTGACATGCGGGACACAG 61.394 63.158 0.00 0.00 0.00 3.66
418 424 2.527100 GGCAGAGTACACGTACATGAC 58.473 52.381 9.85 6.42 38.48 3.06
419 425 2.094906 GGCAGAGTACACGTACATGACA 60.095 50.000 9.85 0.00 38.48 3.58
435 441 4.944317 ACATGACAGTAGATCTGACGAGAA 59.056 41.667 5.18 0.00 46.27 2.87
446 452 3.721035 TCTGACGAGAATACATGCATGG 58.279 45.455 29.41 12.83 0.00 3.66
487 496 2.190981 GGAAATACGTGTACTGGCTCG 58.809 52.381 0.00 0.00 0.00 5.03
489 498 2.556534 AATACGTGTACTGGCTCGAC 57.443 50.000 0.00 0.00 0.00 4.20
492 501 1.443872 CGTGTACTGGCTCGACCAC 60.444 63.158 3.02 0.00 46.36 4.16
539 558 2.299297 ACCTCCACTTGAGAAGTAACCG 59.701 50.000 0.00 0.00 44.42 4.44
547 566 1.414919 TGAGAAGTAACCGCCAACAGT 59.585 47.619 0.00 0.00 0.00 3.55
549 568 2.991866 GAGAAGTAACCGCCAACAGTAC 59.008 50.000 0.00 0.00 0.00 2.73
574 593 1.935300 GCAGACTCAACCACCTGTACG 60.935 57.143 0.00 0.00 0.00 3.67
616 635 3.131396 AGTAAACAAGGCACGTTCTCTG 58.869 45.455 0.00 0.00 0.00 3.35
636 655 2.550606 TGGATTGAACAAGTAACGCACC 59.449 45.455 0.00 0.00 0.00 5.01
709 728 3.356640 GTACGAAAGTCGGACGCG 58.643 61.111 3.53 3.53 44.43 6.01
724 743 2.568090 GCGGCACCAAATGTCCAG 59.432 61.111 0.00 0.00 0.00 3.86
874 893 2.163815 CCGATAAGTAGCTGTATCCCGG 59.836 54.545 0.00 0.00 0.00 5.73
880 899 3.478780 GCTGTATCCCGGCCCATA 58.521 61.111 0.00 0.00 39.74 2.74
884 903 0.988832 TGTATCCCGGCCCATAATCC 59.011 55.000 0.00 0.00 0.00 3.01
885 904 1.286248 GTATCCCGGCCCATAATCCT 58.714 55.000 0.00 0.00 0.00 3.24
889 908 1.562672 CCCGGCCCATAATCCTAGGG 61.563 65.000 9.46 0.00 45.68 3.53
920 947 7.070798 CCTGAGTAAAACGACTATCGATCTAC 58.929 42.308 0.00 3.38 43.74 2.59
929 957 6.002704 ACGACTATCGATCTACCTGGTTAAT 58.997 40.000 3.84 0.00 43.74 1.40
930 958 6.489361 ACGACTATCGATCTACCTGGTTAATT 59.511 38.462 3.84 0.00 43.74 1.40
931 959 7.663081 ACGACTATCGATCTACCTGGTTAATTA 59.337 37.037 3.84 0.00 43.74 1.40
932 960 8.509690 CGACTATCGATCTACCTGGTTAATTAA 58.490 37.037 3.84 0.00 43.74 1.40
933 961 9.843334 GACTATCGATCTACCTGGTTAATTAAG 57.157 37.037 3.84 0.00 0.00 1.85
937 965 5.927115 CGATCTACCTGGTTAATTAAGCTCC 59.073 44.000 23.74 11.53 34.93 4.70
939 967 5.286221 TCTACCTGGTTAATTAAGCTCCCT 58.714 41.667 23.74 9.66 34.93 4.20
940 968 4.505324 ACCTGGTTAATTAAGCTCCCTC 57.495 45.455 23.74 0.89 34.93 4.30
941 969 4.112331 ACCTGGTTAATTAAGCTCCCTCT 58.888 43.478 23.74 2.98 34.93 3.69
942 970 4.080299 ACCTGGTTAATTAAGCTCCCTCTG 60.080 45.833 23.74 9.90 34.93 3.35
944 972 3.523564 TGGTTAATTAAGCTCCCTCTGCT 59.476 43.478 23.74 0.00 43.32 4.24
949 977 0.753479 TAAGCTCCCTCTGCTCTCCG 60.753 60.000 0.00 0.00 40.22 4.63
962 990 4.271816 CTCCGAGCGTCATCCCCG 62.272 72.222 0.00 0.00 0.00 5.73
1245 1273 5.122711 GGTTGGCGCTAAAAACATACTTCTA 59.877 40.000 8.12 0.00 0.00 2.10
1258 1286 4.890581 ACATACTTCTACTCCACTGGCTAG 59.109 45.833 0.00 0.00 0.00 3.42
1263 1291 0.614697 TACTCCACTGGCTAGCAGCA 60.615 55.000 18.24 5.21 44.75 4.41
1273 1301 2.094182 TGGCTAGCAGCAACAGTAGTAC 60.094 50.000 18.24 0.00 44.75 2.73
1274 1302 2.166664 GGCTAGCAGCAACAGTAGTACT 59.833 50.000 18.24 0.00 44.75 2.73
1277 1305 5.452077 GGCTAGCAGCAACAGTAGTACTTAT 60.452 44.000 18.24 0.00 44.75 1.73
1278 1306 6.238953 GGCTAGCAGCAACAGTAGTACTTATA 60.239 42.308 18.24 0.00 44.75 0.98
1280 1308 7.327275 GCTAGCAGCAACAGTAGTACTTATATG 59.673 40.741 10.63 0.00 41.89 1.78
1281 1309 5.986135 AGCAGCAACAGTAGTACTTATATGC 59.014 40.000 0.00 14.18 0.00 3.14
1282 1310 5.986135 GCAGCAACAGTAGTACTTATATGCT 59.014 40.000 17.03 17.03 41.88 3.79
1283 1311 6.144724 GCAGCAACAGTAGTACTTATATGCTC 59.855 42.308 18.75 13.06 39.40 4.26
1284 1312 6.642950 CAGCAACAGTAGTACTTATATGCTCC 59.357 42.308 18.75 0.65 39.40 4.70
1298 1326 1.413118 TGCTCCAGTTCTGTCAGTCA 58.587 50.000 0.00 0.00 0.00 3.41
1311 1339 1.154131 CAGTCAGTCTCCTGTCGCG 60.154 63.158 0.00 0.00 39.82 5.87
1333 1361 3.368236 GGTGTGTCGAGCTTATTCTTGTC 59.632 47.826 0.00 0.00 0.00 3.18
1340 1372 4.152402 TCGAGCTTATTCTTGTCTGTTTGC 59.848 41.667 0.00 0.00 0.00 3.68
1341 1373 4.153117 CGAGCTTATTCTTGTCTGTTTGCT 59.847 41.667 0.00 0.00 0.00 3.91
1342 1374 5.334414 CGAGCTTATTCTTGTCTGTTTGCTT 60.334 40.000 0.00 0.00 0.00 3.91
1343 1375 5.766222 AGCTTATTCTTGTCTGTTTGCTTG 58.234 37.500 0.00 0.00 0.00 4.01
1344 1376 4.383948 GCTTATTCTTGTCTGTTTGCTTGC 59.616 41.667 0.00 0.00 0.00 4.01
1351 1383 1.946768 GTCTGTTTGCTTGCTGTGGTA 59.053 47.619 0.00 0.00 0.00 3.25
1426 1458 5.401531 TTCCTAGGTAAGCACAACAGTAG 57.598 43.478 9.08 0.00 0.00 2.57
1427 1459 4.413760 TCCTAGGTAAGCACAACAGTAGT 58.586 43.478 9.08 0.00 0.00 2.73
1428 1460 4.219944 TCCTAGGTAAGCACAACAGTAGTG 59.780 45.833 9.08 0.00 39.92 2.74
1453 1490 4.973663 CACGGTCAAACTGATTTTGTTACC 59.026 41.667 0.00 0.00 44.47 2.85
1457 1494 3.570550 TCAAACTGATTTTGTTACCCGGG 59.429 43.478 22.25 22.25 44.47 5.73
1463 1500 1.320507 TTTTGTTACCCGGGCTGAAC 58.679 50.000 24.08 22.23 0.00 3.18
1713 1750 2.153401 CCCCACTCCCTTGACACCA 61.153 63.158 0.00 0.00 0.00 4.17
1756 1808 0.675837 GCTCTCCTGACATGCTTGCA 60.676 55.000 0.00 0.00 0.00 4.08
1828 1880 2.248431 GTGTGCTTCGTGTTCGCC 59.752 61.111 0.00 0.00 36.96 5.54
1879 1931 0.737715 CCTTCCTCTTCTTCGTGCCG 60.738 60.000 0.00 0.00 0.00 5.69
1984 2036 1.454111 CGTCTCCTCCATCCGGACT 60.454 63.158 6.12 0.00 35.91 3.85
2031 2083 2.435059 GCTGGAGCGGTTCAGGAC 60.435 66.667 23.79 4.92 0.00 3.85
2160 2212 2.278206 CAGCGTCCTCGTCATCCG 60.278 66.667 0.00 0.00 39.49 4.18
2231 2292 1.748493 TGGCGGGAATGTAAGCAATTC 59.252 47.619 0.00 0.00 0.00 2.17
2232 2293 1.748493 GGCGGGAATGTAAGCAATTCA 59.252 47.619 0.00 0.00 0.00 2.57
2234 2295 3.179048 GCGGGAATGTAAGCAATTCAAC 58.821 45.455 0.00 0.00 0.00 3.18
2235 2296 3.769536 CGGGAATGTAAGCAATTCAACC 58.230 45.455 0.00 0.00 0.00 3.77
2236 2297 3.443681 CGGGAATGTAAGCAATTCAACCT 59.556 43.478 0.00 0.00 0.00 3.50
2239 2300 5.393461 GGGAATGTAAGCAATTCAACCTCAG 60.393 44.000 0.00 0.00 0.00 3.35
2243 2304 0.112995 AGCAATTCAACCTCAGCCCA 59.887 50.000 0.00 0.00 0.00 5.36
2244 2305 0.244721 GCAATTCAACCTCAGCCCAC 59.755 55.000 0.00 0.00 0.00 4.61
2245 2306 0.890683 CAATTCAACCTCAGCCCACC 59.109 55.000 0.00 0.00 0.00 4.61
2255 2316 2.529389 AGCCCACCCCTTTCGACT 60.529 61.111 0.00 0.00 0.00 4.18
2256 2317 2.046217 GCCCACCCCTTTCGACTC 60.046 66.667 0.00 0.00 0.00 3.36
2257 2318 2.890766 GCCCACCCCTTTCGACTCA 61.891 63.158 0.00 0.00 0.00 3.41
2261 2322 0.247736 CACCCCTTTCGACTCAGGAG 59.752 60.000 6.12 0.00 30.81 3.69
2263 2324 1.153745 CCCTTTCGACTCAGGAGCG 60.154 63.158 6.12 1.91 30.81 5.03
2268 2329 1.587043 TTCGACTCAGGAGCGACAGG 61.587 60.000 12.86 0.00 36.96 4.00
2291 2356 5.220835 GGTCGATCATGTCATTGTGCATTTA 60.221 40.000 0.00 0.00 0.00 1.40
2353 2418 4.052229 CTTCGTGGACGCCTCGGT 62.052 66.667 16.36 0.00 40.35 4.69
2354 2419 4.351938 TTCGTGGACGCCTCGGTG 62.352 66.667 16.36 0.00 40.35 4.94
2396 2461 3.832720 GATCGAGAAGCTCCCGCCG 62.833 68.421 0.00 0.00 36.60 6.46
2438 2503 2.737376 GCCACCAAGGACGTCGTC 60.737 66.667 17.16 17.16 41.22 4.20
2519 2584 2.668280 GCTCAACGGCGTCAACCTC 61.668 63.158 15.17 0.00 0.00 3.85
2588 2653 2.126071 AAGTCCACCGTCATCGCG 60.126 61.111 0.00 0.00 35.54 5.87
2828 2893 3.066380 GTTCATCACCAAATTGCCCAAC 58.934 45.455 0.00 0.00 0.00 3.77
2853 2918 3.660501 ACGACACACATGTATGTCACT 57.339 42.857 30.77 16.15 44.54 3.41
2890 2956 4.774124 AGCTGCAGTTCATTGCTAAGATA 58.226 39.130 16.64 0.00 44.38 1.98
3027 3093 1.225704 GGACCCCAAGATCCTGCTG 59.774 63.158 0.00 0.00 31.75 4.41
3375 3441 2.442272 GAGCTCCGACCTAGCCCA 60.442 66.667 0.87 0.00 41.02 5.36
3422 3488 2.409870 CCGTGGAAATCAGCCAGCC 61.410 63.158 0.00 0.00 35.77 4.85
3468 3534 1.362355 CCCCCAAAAGTCGTTGCAC 59.638 57.895 0.00 0.00 0.00 4.57
3507 3573 4.697756 CGCCCGGAGTGGAAGCAA 62.698 66.667 0.73 0.00 42.00 3.91
3564 3630 2.573869 GTGCTGCCGCTCTACTCA 59.426 61.111 0.70 0.00 36.97 3.41
3654 3720 1.691434 GCCTACTCCCTCATCTTCCTG 59.309 57.143 0.00 0.00 0.00 3.86
4172 4238 0.176680 CCGAGGAAGGACACCATGAG 59.823 60.000 0.00 0.00 0.00 2.90
4191 4257 2.584391 GCAGTCCTGGTTCTCGGGT 61.584 63.158 0.00 0.00 42.62 5.28
4222 4288 1.893808 CTGTGCCAGTTCAACGCCT 60.894 57.895 0.00 0.00 0.00 5.52
4830 4896 3.069318 GCGACGGAGGAGGAGGTT 61.069 66.667 0.00 0.00 0.00 3.50
4831 4897 3.066233 GCGACGGAGGAGGAGGTTC 62.066 68.421 0.00 0.00 0.00 3.62
5118 5184 1.374758 CTCCACGGTGCAGAACTCC 60.375 63.158 1.68 0.00 0.00 3.85
5256 5322 4.301027 CCCTGCCGTAGCCCGATC 62.301 72.222 0.00 0.00 39.56 3.69
5366 5434 7.648908 TCTTCACAATCATTCATTTGTCACAAC 59.351 33.333 0.00 0.00 33.93 3.32
5368 5436 5.914074 CACAATCATTCATTTGTCACAACGA 59.086 36.000 0.00 0.00 33.93 3.85
5378 5446 9.566530 TTCATTTGTCACAACGATTATATTTGG 57.433 29.630 0.00 0.00 0.00 3.28
5398 5466 8.930846 ATTTGGATTATTTGGATCTGTCTAGG 57.069 34.615 0.00 0.00 0.00 3.02
5399 5467 7.690454 TTGGATTATTTGGATCTGTCTAGGA 57.310 36.000 0.00 0.00 0.00 2.94
5400 5468 7.067496 TGGATTATTTGGATCTGTCTAGGAC 57.933 40.000 0.00 0.00 0.00 3.85
5401 5469 6.615316 TGGATTATTTGGATCTGTCTAGGACA 59.385 38.462 0.43 0.43 40.50 4.02
5402 5470 6.931840 GGATTATTTGGATCTGTCTAGGACAC 59.068 42.308 0.00 0.00 37.67 3.67
5403 5471 6.867519 TTATTTGGATCTGTCTAGGACACA 57.132 37.500 0.00 0.00 37.67 3.72
5404 5472 5.965033 ATTTGGATCTGTCTAGGACACAT 57.035 39.130 0.00 0.00 37.67 3.21
5405 5473 5.344743 TTTGGATCTGTCTAGGACACATC 57.655 43.478 7.18 7.18 37.67 3.06
5406 5474 4.256983 TGGATCTGTCTAGGACACATCT 57.743 45.455 12.87 0.00 37.83 2.90
5407 5475 5.388599 TGGATCTGTCTAGGACACATCTA 57.611 43.478 12.87 6.81 37.83 1.98
5408 5476 5.380900 TGGATCTGTCTAGGACACATCTAG 58.619 45.833 12.87 0.00 37.83 2.43
5409 5477 5.132816 TGGATCTGTCTAGGACACATCTAGA 59.867 44.000 12.87 0.00 37.83 2.43
5410 5478 6.183361 TGGATCTGTCTAGGACACATCTAGAT 60.183 42.308 12.87 0.00 43.25 1.98
5411 5479 7.017651 TGGATCTGTCTAGGACACATCTAGATA 59.982 40.741 4.54 1.80 43.25 1.98
5412 5480 8.052748 GGATCTGTCTAGGACACATCTAGATAT 58.947 40.741 4.54 0.00 43.25 1.63
5413 5481 8.806429 ATCTGTCTAGGACACATCTAGATATG 57.194 38.462 9.51 9.51 43.25 1.78
5414 5482 7.978925 TCTGTCTAGGACACATCTAGATATGA 58.021 38.462 17.82 0.00 43.25 2.15
5415 5483 7.880713 TCTGTCTAGGACACATCTAGATATGAC 59.119 40.741 17.82 11.19 43.25 3.06
5416 5484 7.518188 TGTCTAGGACACATCTAGATATGACA 58.482 38.462 17.82 7.35 43.25 3.58
5417 5485 8.166726 TGTCTAGGACACATCTAGATATGACAT 58.833 37.037 17.82 11.49 43.25 3.06
5418 5486 9.674068 GTCTAGGACACATCTAGATATGACATA 57.326 37.037 17.82 12.01 43.25 2.29
5438 5506 9.546428 TGACATAATTATGTGACATCTAACCTG 57.454 33.333 30.88 3.28 46.20 4.00
5439 5507 9.764363 GACATAATTATGTGACATCTAACCTGA 57.236 33.333 30.88 0.00 46.20 3.86
5452 5520 7.741027 CATCTAACCTGATGTTCATTATGCT 57.259 36.000 0.00 0.00 39.05 3.79
5453 5521 8.162878 CATCTAACCTGATGTTCATTATGCTT 57.837 34.615 0.00 0.00 39.05 3.91
5454 5522 7.558161 TCTAACCTGATGTTCATTATGCTTG 57.442 36.000 0.00 0.00 38.42 4.01
5455 5523 7.112122 TCTAACCTGATGTTCATTATGCTTGT 58.888 34.615 0.00 0.00 38.42 3.16
5456 5524 5.571784 ACCTGATGTTCATTATGCTTGTG 57.428 39.130 0.00 0.00 0.00 3.33
5457 5525 5.255687 ACCTGATGTTCATTATGCTTGTGA 58.744 37.500 0.00 0.00 0.00 3.58
5458 5526 5.889853 ACCTGATGTTCATTATGCTTGTGAT 59.110 36.000 0.00 0.00 0.00 3.06
5459 5527 6.039047 ACCTGATGTTCATTATGCTTGTGATC 59.961 38.462 0.00 0.00 0.00 2.92
5460 5528 6.262496 CCTGATGTTCATTATGCTTGTGATCT 59.738 38.462 0.00 0.00 0.00 2.75
5461 5529 7.443272 CCTGATGTTCATTATGCTTGTGATCTA 59.557 37.037 0.00 0.00 0.00 1.98
5462 5530 8.913487 TGATGTTCATTATGCTTGTGATCTAT 57.087 30.769 0.00 0.00 0.00 1.98
5463 5531 9.346005 TGATGTTCATTATGCTTGTGATCTATT 57.654 29.630 0.00 0.00 0.00 1.73
5509 5577 7.789273 TTTTTGAACATCGGTACAGACTTAA 57.211 32.000 0.00 0.00 0.00 1.85
5510 5578 7.416154 TTTTGAACATCGGTACAGACTTAAG 57.584 36.000 0.00 0.00 0.00 1.85
5511 5579 4.491676 TGAACATCGGTACAGACTTAAGC 58.508 43.478 1.29 0.00 0.00 3.09
5512 5580 3.146618 ACATCGGTACAGACTTAAGCG 57.853 47.619 1.29 0.00 35.57 4.68
5513 5581 1.852895 CATCGGTACAGACTTAAGCGC 59.147 52.381 0.00 0.00 34.35 5.92
5514 5582 1.171308 TCGGTACAGACTTAAGCGCT 58.829 50.000 2.64 2.64 34.35 5.92
5515 5583 1.131883 TCGGTACAGACTTAAGCGCTC 59.868 52.381 12.06 0.00 34.35 5.03
5516 5584 1.135489 CGGTACAGACTTAAGCGCTCA 60.135 52.381 12.06 0.00 0.00 4.26
5517 5585 2.479730 CGGTACAGACTTAAGCGCTCAT 60.480 50.000 12.06 0.00 0.00 2.90
5518 5586 3.242969 CGGTACAGACTTAAGCGCTCATA 60.243 47.826 12.06 0.00 0.00 2.15
5519 5587 4.043073 GGTACAGACTTAAGCGCTCATAC 58.957 47.826 12.06 5.04 0.00 2.39
5520 5588 3.868757 ACAGACTTAAGCGCTCATACA 57.131 42.857 12.06 0.00 0.00 2.29
5521 5589 3.512680 ACAGACTTAAGCGCTCATACAC 58.487 45.455 12.06 1.00 0.00 2.90
5522 5590 3.193691 ACAGACTTAAGCGCTCATACACT 59.806 43.478 12.06 3.63 0.00 3.55
5523 5591 3.794028 CAGACTTAAGCGCTCATACACTC 59.206 47.826 12.06 0.00 0.00 3.51
5524 5592 3.697045 AGACTTAAGCGCTCATACACTCT 59.303 43.478 12.06 1.55 0.00 3.24
5525 5593 4.035278 ACTTAAGCGCTCATACACTCTC 57.965 45.455 12.06 0.00 0.00 3.20
5526 5594 3.444034 ACTTAAGCGCTCATACACTCTCA 59.556 43.478 12.06 0.00 0.00 3.27
5527 5595 2.285827 AAGCGCTCATACACTCTCAC 57.714 50.000 12.06 0.00 0.00 3.51
5528 5596 1.177401 AGCGCTCATACACTCTCACA 58.823 50.000 2.64 0.00 0.00 3.58
5529 5597 1.753649 AGCGCTCATACACTCTCACAT 59.246 47.619 2.64 0.00 0.00 3.21
5530 5598 2.123342 GCGCTCATACACTCTCACATC 58.877 52.381 0.00 0.00 0.00 3.06
5531 5599 2.480244 GCGCTCATACACTCTCACATCA 60.480 50.000 0.00 0.00 0.00 3.07
5532 5600 3.774066 CGCTCATACACTCTCACATCAA 58.226 45.455 0.00 0.00 0.00 2.57
5533 5601 3.795639 CGCTCATACACTCTCACATCAAG 59.204 47.826 0.00 0.00 0.00 3.02
5534 5602 4.439289 CGCTCATACACTCTCACATCAAGA 60.439 45.833 0.00 0.00 0.00 3.02
5535 5603 4.803088 GCTCATACACTCTCACATCAAGAC 59.197 45.833 0.00 0.00 0.00 3.01
5536 5604 5.394005 GCTCATACACTCTCACATCAAGACT 60.394 44.000 0.00 0.00 0.00 3.24
5537 5605 6.596309 TCATACACTCTCACATCAAGACTT 57.404 37.500 0.00 0.00 0.00 3.01
5538 5606 6.393171 TCATACACTCTCACATCAAGACTTG 58.607 40.000 9.03 9.03 0.00 3.16
5539 5607 4.944619 ACACTCTCACATCAAGACTTGA 57.055 40.909 19.85 19.85 45.01 3.02
5540 5608 5.282055 ACACTCTCACATCAAGACTTGAA 57.718 39.130 21.29 4.66 43.95 2.69
5541 5609 5.053145 ACACTCTCACATCAAGACTTGAAC 58.947 41.667 21.29 0.00 43.95 3.18
5542 5610 4.450419 CACTCTCACATCAAGACTTGAACC 59.550 45.833 21.29 0.00 43.95 3.62
5543 5611 3.999663 CTCTCACATCAAGACTTGAACCC 59.000 47.826 21.29 0.00 43.95 4.11
5544 5612 3.648067 TCTCACATCAAGACTTGAACCCT 59.352 43.478 21.29 2.59 43.95 4.34
5545 5613 3.743521 TCACATCAAGACTTGAACCCTG 58.256 45.455 21.29 16.51 43.95 4.45
5546 5614 2.816087 CACATCAAGACTTGAACCCTGG 59.184 50.000 21.29 9.58 43.95 4.45
5547 5615 2.443255 ACATCAAGACTTGAACCCTGGT 59.557 45.455 21.29 10.13 43.95 4.00
5548 5616 2.638480 TCAAGACTTGAACCCTGGTG 57.362 50.000 15.58 0.00 36.59 4.17
5549 5617 1.142870 TCAAGACTTGAACCCTGGTGG 59.857 52.381 15.58 0.00 36.59 4.61
5550 5618 4.148481 TCAAGACTTGAACCCTGGTGGG 62.148 54.545 15.58 0.00 46.43 4.61
5561 5629 1.343069 CCTGGTGGGCTAGAGATACC 58.657 60.000 0.00 0.00 0.00 2.73
5562 5630 1.413082 CCTGGTGGGCTAGAGATACCA 60.413 57.143 0.00 1.17 38.98 3.25
5566 5634 2.848678 TGGGCTAGAGATACCACAGT 57.151 50.000 0.00 0.00 0.00 3.55
5567 5635 3.116096 TGGGCTAGAGATACCACAGTT 57.884 47.619 0.00 0.00 0.00 3.16
5568 5636 3.031736 TGGGCTAGAGATACCACAGTTC 58.968 50.000 0.00 0.00 0.00 3.01
5569 5637 2.365941 GGGCTAGAGATACCACAGTTCC 59.634 54.545 0.00 0.00 0.00 3.62
5570 5638 3.301274 GGCTAGAGATACCACAGTTCCT 58.699 50.000 0.00 0.00 0.00 3.36
5571 5639 3.319689 GGCTAGAGATACCACAGTTCCTC 59.680 52.174 0.00 0.00 0.00 3.71
5572 5640 4.211920 GCTAGAGATACCACAGTTCCTCT 58.788 47.826 0.00 0.00 37.36 3.69
5573 5641 5.378332 GCTAGAGATACCACAGTTCCTCTA 58.622 45.833 0.00 0.00 36.02 2.43
5574 5642 5.828859 GCTAGAGATACCACAGTTCCTCTAA 59.171 44.000 0.00 0.00 36.36 2.10
5575 5643 6.321690 GCTAGAGATACCACAGTTCCTCTAAA 59.678 42.308 0.00 0.00 36.36 1.85
5576 5644 6.532988 AGAGATACCACAGTTCCTCTAAAC 57.467 41.667 0.00 0.00 34.07 2.01
5577 5645 6.017192 AGAGATACCACAGTTCCTCTAAACA 58.983 40.000 0.00 0.00 34.07 2.83
5578 5646 6.670027 AGAGATACCACAGTTCCTCTAAACAT 59.330 38.462 0.00 0.00 34.07 2.71
5579 5647 7.181125 AGAGATACCACAGTTCCTCTAAACATT 59.819 37.037 0.00 0.00 34.07 2.71
5580 5648 7.331791 AGATACCACAGTTCCTCTAAACATTC 58.668 38.462 0.00 0.00 0.00 2.67
5581 5649 5.304686 ACCACAGTTCCTCTAAACATTCA 57.695 39.130 0.00 0.00 0.00 2.57
5582 5650 5.690865 ACCACAGTTCCTCTAAACATTCAA 58.309 37.500 0.00 0.00 0.00 2.69
5583 5651 5.531287 ACCACAGTTCCTCTAAACATTCAAC 59.469 40.000 0.00 0.00 0.00 3.18
5584 5652 5.048713 CCACAGTTCCTCTAAACATTCAACC 60.049 44.000 0.00 0.00 0.00 3.77
5585 5653 5.530915 CACAGTTCCTCTAAACATTCAACCA 59.469 40.000 0.00 0.00 0.00 3.67
5586 5654 5.531287 ACAGTTCCTCTAAACATTCAACCAC 59.469 40.000 0.00 0.00 0.00 4.16
5587 5655 5.530915 CAGTTCCTCTAAACATTCAACCACA 59.469 40.000 0.00 0.00 0.00 4.17
5588 5656 5.765182 AGTTCCTCTAAACATTCAACCACAG 59.235 40.000 0.00 0.00 0.00 3.66
5589 5657 4.651778 TCCTCTAAACATTCAACCACAGG 58.348 43.478 0.00 0.00 0.00 4.00
5590 5658 4.104102 TCCTCTAAACATTCAACCACAGGT 59.896 41.667 0.00 0.00 37.65 4.00
5600 5668 3.343972 CCACAGGTTGGTTCGCTG 58.656 61.111 0.00 0.00 41.10 5.18
5601 5669 1.525995 CCACAGGTTGGTTCGCTGT 60.526 57.895 0.00 0.00 41.10 4.40
5602 5670 1.101049 CCACAGGTTGGTTCGCTGTT 61.101 55.000 0.00 0.00 41.10 3.16
5603 5671 0.029300 CACAGGTTGGTTCGCTGTTG 59.971 55.000 0.00 0.00 0.00 3.33
5604 5672 0.393808 ACAGGTTGGTTCGCTGTTGT 60.394 50.000 0.00 0.00 0.00 3.32
5605 5673 0.029300 CAGGTTGGTTCGCTGTTGTG 59.971 55.000 0.00 0.00 0.00 3.33
5606 5674 0.107410 AGGTTGGTTCGCTGTTGTGA 60.107 50.000 0.00 0.00 0.00 3.58
5607 5675 0.951558 GGTTGGTTCGCTGTTGTGAT 59.048 50.000 0.00 0.00 32.25 3.06
5608 5676 2.147958 GGTTGGTTCGCTGTTGTGATA 58.852 47.619 0.00 0.00 32.25 2.15
5609 5677 2.747446 GGTTGGTTCGCTGTTGTGATAT 59.253 45.455 0.00 0.00 32.25 1.63
5610 5678 3.190535 GGTTGGTTCGCTGTTGTGATATT 59.809 43.478 0.00 0.00 32.25 1.28
5611 5679 4.320935 GGTTGGTTCGCTGTTGTGATATTT 60.321 41.667 0.00 0.00 32.25 1.40
5612 5680 5.106475 GGTTGGTTCGCTGTTGTGATATTTA 60.106 40.000 0.00 0.00 32.25 1.40
5613 5681 6.404293 GGTTGGTTCGCTGTTGTGATATTTAT 60.404 38.462 0.00 0.00 32.25 1.40
5614 5682 6.117911 TGGTTCGCTGTTGTGATATTTATG 57.882 37.500 0.00 0.00 32.25 1.90
5615 5683 5.877564 TGGTTCGCTGTTGTGATATTTATGA 59.122 36.000 0.00 0.00 32.25 2.15
5616 5684 6.037062 TGGTTCGCTGTTGTGATATTTATGAG 59.963 38.462 0.00 0.00 32.25 2.90
5617 5685 6.257849 GGTTCGCTGTTGTGATATTTATGAGA 59.742 38.462 0.00 0.00 32.25 3.27
5618 5686 7.340699 GTTCGCTGTTGTGATATTTATGAGAG 58.659 38.462 0.00 0.00 32.25 3.20
5619 5687 5.463392 TCGCTGTTGTGATATTTATGAGAGC 59.537 40.000 0.00 0.00 0.00 4.09
5620 5688 5.464722 CGCTGTTGTGATATTTATGAGAGCT 59.535 40.000 0.00 0.00 0.00 4.09
5621 5689 6.018425 CGCTGTTGTGATATTTATGAGAGCTT 60.018 38.462 0.00 0.00 0.00 3.74
5622 5690 7.169813 CGCTGTTGTGATATTTATGAGAGCTTA 59.830 37.037 0.00 0.00 0.00 3.09
5623 5691 8.494347 GCTGTTGTGATATTTATGAGAGCTTAG 58.506 37.037 0.00 0.00 0.00 2.18
5624 5692 9.755804 CTGTTGTGATATTTATGAGAGCTTAGA 57.244 33.333 0.00 0.00 0.00 2.10
5628 5696 9.702494 TGTGATATTTATGAGAGCTTAGATGTG 57.298 33.333 0.00 0.00 0.00 3.21
5629 5697 9.920133 GTGATATTTATGAGAGCTTAGATGTGA 57.080 33.333 0.00 0.00 0.00 3.58
5639 5707 9.579932 TGAGAGCTTAGATGTGATATCTTTAGA 57.420 33.333 3.98 0.00 0.00 2.10
5788 5856 0.744874 ATCTCTAACAGCCGCGCTAA 59.255 50.000 5.56 0.00 36.40 3.09
5790 5858 1.067425 TCTCTAACAGCCGCGCTAAAA 60.067 47.619 5.56 0.00 36.40 1.52
5814 5882 2.123683 TGTGCGGGGAAAAGGCAA 60.124 55.556 0.00 0.00 38.58 4.52
5816 5884 2.197324 TGCGGGGAAAAGGCAAGT 59.803 55.556 0.00 0.00 33.01 3.16
5821 5889 2.224090 GCGGGGAAAAGGCAAGTTTTAA 60.224 45.455 0.00 0.00 29.58 1.52
5824 5892 2.798283 GGGAAAAGGCAAGTTTTAACGC 59.202 45.455 0.00 0.00 29.58 4.84
5825 5893 2.469886 GGAAAAGGCAAGTTTTAACGCG 59.530 45.455 3.53 3.53 29.58 6.01
5826 5894 1.483316 AAAGGCAAGTTTTAACGCGC 58.517 45.000 5.73 0.00 0.00 6.86
5827 5895 0.659123 AAGGCAAGTTTTAACGCGCG 60.659 50.000 30.96 30.96 33.54 6.86
5828 5896 1.369568 GGCAAGTTTTAACGCGCGT 60.370 52.632 32.73 32.73 33.54 6.01
5829 5897 0.110733 GGCAAGTTTTAACGCGCGTA 60.111 50.000 37.93 20.05 33.54 4.42
5830 5898 1.235695 GCAAGTTTTAACGCGCGTAG 58.764 50.000 37.93 18.12 0.00 3.51
5831 5899 1.860709 CAAGTTTTAACGCGCGTAGG 58.139 50.000 37.93 14.95 0.00 3.18
5832 5900 1.456544 CAAGTTTTAACGCGCGTAGGA 59.543 47.619 37.93 21.73 0.00 2.94
5842 5910 3.122971 GCGTAGGACGGTTTGGCC 61.123 66.667 0.00 0.00 42.82 5.36
5843 5911 2.660802 CGTAGGACGGTTTGGCCT 59.339 61.111 3.32 0.00 38.08 5.19
5850 5932 2.406002 GACGGTTTGGCCTGGGAGAA 62.406 60.000 3.32 0.00 34.25 2.87
5869 5951 3.131478 CCGGCGCGGGAAAAGAAT 61.131 61.111 28.59 0.00 44.15 2.40
5870 5952 2.403586 CGGCGCGGGAAAAGAATC 59.596 61.111 8.83 0.00 0.00 2.52
5871 5953 2.403586 GGCGCGGGAAAAGAATCG 59.596 61.111 8.83 0.00 0.00 3.34
5876 5958 1.226018 CGGGAAAAGAATCGCACGC 60.226 57.895 0.00 0.00 32.88 5.34
5897 5987 2.702847 GACAGTTTTGGCGTGAGGT 58.297 52.632 0.00 0.00 0.00 3.85
5913 6003 4.570663 GTGTCCGGCGCGCTCTAT 62.571 66.667 32.29 0.00 0.00 1.98
5917 6007 0.872881 GTCCGGCGCGCTCTATAAAA 60.873 55.000 32.29 5.22 0.00 1.52
5918 6008 0.179105 TCCGGCGCGCTCTATAAAAA 60.179 50.000 32.29 3.52 0.00 1.94
5965 6057 1.298014 CAGCGCCTTCTTCTTCCCT 59.702 57.895 2.29 0.00 0.00 4.20
5968 6060 1.298014 CGCCTTCTTCTTCCCTGCT 59.702 57.895 0.00 0.00 0.00 4.24
5975 6067 4.682714 TCTTCCCTGCTGCCCCCT 62.683 66.667 0.00 0.00 0.00 4.79
5977 6069 3.651980 CTTCCCTGCTGCCCCCTTC 62.652 68.421 0.00 0.00 0.00 3.46
5985 6077 2.203938 TGCCCCCTTCTTCCTCGT 60.204 61.111 0.00 0.00 0.00 4.18
6000 6092 4.473520 CGTCTCCAGCGCCCCATT 62.474 66.667 2.29 0.00 0.00 3.16
6025 6117 4.452733 CCACGCCCTTCTCCCGAC 62.453 72.222 0.00 0.00 0.00 4.79
6044 6136 4.697756 CCACCGCGCCTTCTTCCA 62.698 66.667 0.00 0.00 0.00 3.53
6053 6145 3.702048 CTTCTTCCACGCCCCCGA 61.702 66.667 0.00 0.00 38.29 5.14
6054 6146 3.952628 CTTCTTCCACGCCCCCGAC 62.953 68.421 0.00 0.00 38.29 4.79
6147 6239 3.902150 GAAGATCCGCTTCGATGATGTA 58.098 45.455 1.89 0.00 43.22 2.29
6243 6335 1.801395 CGGCCACGTTCGTAGATGAAT 60.801 52.381 2.24 0.00 35.04 2.57
6249 6341 4.027621 CCACGTTCGTAGATGAATTTCTCG 60.028 45.833 0.00 0.00 35.04 4.04
6250 6342 4.027621 CACGTTCGTAGATGAATTTCTCGG 60.028 45.833 0.00 0.00 35.04 4.63
6251 6343 4.142534 ACGTTCGTAGATGAATTTCTCGGA 60.143 41.667 0.00 0.00 35.04 4.55
6255 6347 2.969628 AGATGAATTTCTCGGACGCT 57.030 45.000 0.00 0.00 0.00 5.07
6258 6350 0.457853 TGAATTTCTCGGACGCTCGG 60.458 55.000 0.00 0.00 0.00 4.63
6262 6354 2.884087 TTTCTCGGACGCTCGGATGC 62.884 60.000 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 8.387354 CGTTGCATGATTGAGTTAGTACATTAA 58.613 33.333 0.00 0.00 0.00 1.40
114 117 0.389166 GTCAAGTGGAGGTCAGCTCG 60.389 60.000 0.00 0.00 0.00 5.03
153 156 3.627395 AGTGATTGGTTCCGCTTATCA 57.373 42.857 0.00 0.00 0.00 2.15
190 193 1.943340 GATCTCGCCATTTTCTGTCCC 59.057 52.381 0.00 0.00 0.00 4.46
219 222 1.003812 TGTTTGATTACGGACCTGGGG 59.996 52.381 0.00 0.00 0.00 4.96
224 227 4.814234 TGATGCTATGTTTGATTACGGACC 59.186 41.667 0.00 0.00 0.00 4.46
238 241 6.019559 CGGTTATCATATTCCGTGATGCTATG 60.020 42.308 0.00 0.00 36.96 2.23
273 276 2.355197 TGCACACAATATGAACCGGAG 58.645 47.619 9.46 0.00 0.00 4.63
283 286 4.674475 GATGTCAATGCATGCACACAATA 58.326 39.130 25.37 8.68 0.00 1.90
293 296 2.882137 TGCATCATCGATGTCAATGCAT 59.118 40.909 32.77 15.48 45.55 3.96
296 301 5.398416 GTGAATTGCATCATCGATGTCAATG 59.602 40.000 26.95 22.70 41.23 2.82
340 345 1.945819 GCATGTCCACACCAACGATCT 60.946 52.381 0.00 0.00 0.00 2.75
357 362 1.746615 GTGTCCCGCATGTCAGCAT 60.747 57.895 0.00 0.00 35.32 3.79
359 364 2.358615 TGTGTCCCGCATGTCAGC 60.359 61.111 0.00 0.00 0.00 4.26
360 365 0.738762 CTCTGTGTCCCGCATGTCAG 60.739 60.000 0.00 0.00 0.00 3.51
361 366 1.184970 TCTCTGTGTCCCGCATGTCA 61.185 55.000 0.00 0.00 0.00 3.58
377 382 2.605580 CGGCCTTGCTTGTCTTTTTCTC 60.606 50.000 0.00 0.00 0.00 2.87
418 424 5.855925 GCATGTATTCTCGTCAGATCTACTG 59.144 44.000 0.00 0.00 46.97 2.74
419 425 5.532779 TGCATGTATTCTCGTCAGATCTACT 59.467 40.000 0.00 0.00 0.00 2.57
435 441 6.096673 TGAACGTAGTATCCATGCATGTAT 57.903 37.500 24.58 17.38 45.00 2.29
446 452 5.104374 TCCGTCCAAAATGAACGTAGTATC 58.896 41.667 0.00 0.00 45.00 2.24
483 492 4.090057 GCCTTTGCGTGGTCGAGC 62.090 66.667 7.89 7.89 39.71 5.03
487 496 1.166531 AAGACAGCCTTTGCGTGGTC 61.167 55.000 0.00 0.00 44.33 4.02
489 498 0.040067 GAAAGACAGCCTTTGCGTGG 60.040 55.000 0.00 0.00 44.63 4.94
492 501 1.517242 AGAGAAAGACAGCCTTTGCG 58.483 50.000 0.00 0.00 44.63 4.85
539 558 1.734465 GTCTGCTGATGTACTGTTGGC 59.266 52.381 0.00 0.00 0.00 4.52
547 566 2.028112 GGTGGTTGAGTCTGCTGATGTA 60.028 50.000 0.00 0.00 0.00 2.29
549 568 1.002888 AGGTGGTTGAGTCTGCTGATG 59.997 52.381 0.00 0.00 0.00 3.07
574 593 2.832672 GGAGATGTCCGTGAATTTGC 57.167 50.000 0.00 0.00 31.37 3.68
616 635 2.095415 GGGTGCGTTACTTGTTCAATCC 60.095 50.000 0.00 0.00 0.00 3.01
636 655 4.717629 TCACGGAAGCGCTGACGG 62.718 66.667 29.43 22.91 40.57 4.79
709 728 1.598701 GGAGCTGGACATTTGGTGCC 61.599 60.000 0.00 0.00 36.96 5.01
724 743 4.570663 CCGGTGGTCGATCGGAGC 62.571 72.222 16.41 11.95 45.96 4.70
790 809 3.636313 CTGGGCCGCGTTTCTCGTA 62.636 63.158 4.92 0.00 42.13 3.43
815 834 3.350833 GTTGCTGTCCTCCAATCAGAAT 58.649 45.455 0.00 0.00 0.00 2.40
816 835 2.553028 GGTTGCTGTCCTCCAATCAGAA 60.553 50.000 0.00 0.00 0.00 3.02
889 908 2.484264 AGTCGTTTTACTCAGGCATTGC 59.516 45.455 0.00 0.00 0.00 3.56
920 947 4.455606 CAGAGGGAGCTTAATTAACCAGG 58.544 47.826 5.88 0.00 0.00 4.45
929 957 1.490574 GGAGAGCAGAGGGAGCTTAA 58.509 55.000 0.00 0.00 43.58 1.85
930 958 0.753479 CGGAGAGCAGAGGGAGCTTA 60.753 60.000 0.00 0.00 43.58 3.09
931 959 2.057408 CGGAGAGCAGAGGGAGCTT 61.057 63.158 0.00 0.00 43.58 3.74
932 960 2.441901 CGGAGAGCAGAGGGAGCT 60.442 66.667 0.00 0.00 46.82 4.09
933 961 2.441164 TCGGAGAGCAGAGGGAGC 60.441 66.667 0.00 0.00 0.00 4.70
944 972 2.833582 GGGGATGACGCTCGGAGA 60.834 66.667 9.69 0.00 0.00 3.71
952 980 2.435234 TTTTCGCCGGGGATGACG 60.435 61.111 23.22 6.27 0.00 4.35
953 981 0.958876 AAGTTTTCGCCGGGGATGAC 60.959 55.000 23.22 21.50 0.00 3.06
954 982 0.958382 CAAGTTTTCGCCGGGGATGA 60.958 55.000 23.22 11.42 0.00 2.92
955 983 0.958382 TCAAGTTTTCGCCGGGGATG 60.958 55.000 23.22 16.72 0.00 3.51
962 990 2.073816 TCGATTCCTCAAGTTTTCGCC 58.926 47.619 0.00 0.00 0.00 5.54
1245 1273 1.483595 TTGCTGCTAGCCAGTGGAGT 61.484 55.000 15.20 0.77 43.71 3.85
1258 1286 5.986135 AGCATATAAGTACTACTGTTGCTGC 59.014 40.000 15.34 8.78 36.62 5.25
1263 1291 7.899648 ACTGGAGCATATAAGTACTACTGTT 57.100 36.000 0.00 0.00 0.00 3.16
1273 1301 5.911752 ACTGACAGAACTGGAGCATATAAG 58.088 41.667 10.08 0.00 34.19 1.73
1274 1302 5.422012 TGACTGACAGAACTGGAGCATATAA 59.578 40.000 10.08 0.00 34.19 0.98
1277 1305 3.165071 TGACTGACAGAACTGGAGCATA 58.835 45.455 10.08 0.00 34.19 3.14
1278 1306 1.973515 TGACTGACAGAACTGGAGCAT 59.026 47.619 10.08 0.00 34.19 3.79
1298 1326 2.597805 ACACCGCGACAGGAGACT 60.598 61.111 8.23 0.00 46.44 3.24
1311 1339 3.326747 ACAAGAATAAGCTCGACACACC 58.673 45.455 0.00 0.00 0.00 4.16
1333 1361 2.553602 TGATACCACAGCAAGCAAACAG 59.446 45.455 0.00 0.00 0.00 3.16
1340 1372 1.394917 GCGAACTGATACCACAGCAAG 59.605 52.381 0.00 0.00 41.06 4.01
1341 1373 1.438651 GCGAACTGATACCACAGCAA 58.561 50.000 0.00 0.00 41.06 3.91
1342 1374 0.735978 CGCGAACTGATACCACAGCA 60.736 55.000 0.00 0.00 41.06 4.41
1343 1375 1.999051 CGCGAACTGATACCACAGC 59.001 57.895 0.00 0.00 41.06 4.40
1344 1376 0.458543 AGCGCGAACTGATACCACAG 60.459 55.000 12.10 0.00 42.78 3.66
1351 1383 3.296709 AACCGGAGCGCGAACTGAT 62.297 57.895 12.10 0.00 0.00 2.90
1397 1429 1.007580 GCTTACCTAGGAAAGCGCAC 58.992 55.000 17.98 0.00 38.80 5.34
1401 1433 3.408634 TGTTGTGCTTACCTAGGAAAGC 58.591 45.455 17.98 10.92 46.60 3.51
1426 1458 3.963383 AAATCAGTTTGACCGTGTCAC 57.037 42.857 6.27 0.00 42.60 3.67
1457 1494 2.035442 GCCAGGAGAACCGTTCAGC 61.035 63.158 13.69 5.02 41.83 4.26
1463 1500 2.124570 CATGGGCCAGGAGAACCG 60.125 66.667 14.11 0.00 41.83 4.44
1756 1808 1.188863 GCACCATGGGAAGCTGAAAT 58.811 50.000 18.09 0.00 0.00 2.17
1879 1931 4.373116 TTGCCGAGGACCACGCTC 62.373 66.667 5.72 0.70 0.00 5.03
1984 2036 2.340809 CCGTTGTAGGACGCCACA 59.659 61.111 0.00 0.00 41.50 4.17
2231 2292 2.371897 AAAGGGGTGGGCTGAGGTTG 62.372 60.000 0.00 0.00 0.00 3.77
2232 2293 2.081585 GAAAGGGGTGGGCTGAGGTT 62.082 60.000 0.00 0.00 0.00 3.50
2234 2295 2.356667 GAAAGGGGTGGGCTGAGG 59.643 66.667 0.00 0.00 0.00 3.86
2235 2296 2.045926 CGAAAGGGGTGGGCTGAG 60.046 66.667 0.00 0.00 0.00 3.35
2236 2297 2.528127 TCGAAAGGGGTGGGCTGA 60.528 61.111 0.00 0.00 0.00 4.26
2239 2300 2.046217 GAGTCGAAAGGGGTGGGC 60.046 66.667 0.00 0.00 0.00 5.36
2243 2304 1.545706 GCTCCTGAGTCGAAAGGGGT 61.546 60.000 10.70 0.00 36.33 4.95
2244 2305 1.219393 GCTCCTGAGTCGAAAGGGG 59.781 63.158 9.52 7.68 37.09 4.79
2245 2306 1.153745 CGCTCCTGAGTCGAAAGGG 60.154 63.158 9.52 0.45 34.08 3.95
2263 2324 3.308053 CACAATGACATGATCGACCTGTC 59.692 47.826 13.95 13.95 41.97 3.51
2268 2329 3.957671 ATGCACAATGACATGATCGAC 57.042 42.857 0.00 0.00 0.00 4.20
2291 2356 2.519771 TGATGGAGCTGAAAAGGCAT 57.480 45.000 0.00 0.00 0.00 4.40
2396 2461 4.722700 TTGCCGGCCTCCTTGAGC 62.723 66.667 26.77 0.00 0.00 4.26
2438 2503 4.096003 AACACGATCCGGCCCCTG 62.096 66.667 0.00 0.00 0.00 4.45
2446 2511 1.068474 CACGTCCTTGAACACGATCC 58.932 55.000 0.00 0.00 39.38 3.36
2588 2653 1.443802 GGTAGAACCTCTGCAGCAAC 58.556 55.000 9.47 0.00 34.73 4.17
2741 2806 3.479269 GCCGTCTCGTTGCCGAAG 61.479 66.667 0.00 0.00 43.69 3.79
2801 2866 3.058293 GCAATTTGGTGATGAACTCGTGA 60.058 43.478 0.00 0.00 0.00 4.35
2828 2893 3.702330 ACATACATGTGTGTCGTATCCG 58.298 45.455 21.17 0.00 40.03 4.18
3006 3072 1.689233 CAGGATCTTGGGGTCCCGA 60.689 63.158 0.48 0.00 39.42 5.14
3027 3093 4.838486 CTCGTCGCCTCGTCCAGC 62.838 72.222 0.00 0.00 0.00 4.85
3450 3516 1.362355 GTGCAACGACTTTTGGGGG 59.638 57.895 0.00 0.00 0.00 5.40
3468 3534 2.662006 TCATCTTGAGCAGACGAAGG 57.338 50.000 0.00 0.00 32.83 3.46
4080 4146 1.740296 GGTGATCGTCCGGTGGTTG 60.740 63.158 0.00 0.00 0.00 3.77
4152 4218 0.252057 TCATGGTGTCCTTCCTCGGA 60.252 55.000 0.00 0.00 0.00 4.55
4172 4238 2.266055 CCGAGAACCAGGACTGCC 59.734 66.667 0.00 0.00 0.00 4.85
4191 4257 2.195567 GCACAGGCACAGGCAGAAA 61.196 57.895 0.00 0.00 43.71 2.52
4632 4698 2.815308 ATCAGCCCGATCACCGTC 59.185 61.111 0.00 0.00 36.31 4.79
4680 4746 0.598680 CCTTGCCGTCGATCAGGATC 60.599 60.000 8.46 0.00 34.56 3.36
4857 4923 2.456119 CCCGCTGATGAACTCGTGC 61.456 63.158 0.00 0.00 0.00 5.34
5279 5345 0.671781 ACAAGCGAGATGACCTGCAC 60.672 55.000 0.00 0.00 0.00 4.57
5377 5445 6.931840 GTGTCCTAGACAGATCCAAATAATCC 59.068 42.308 0.00 0.00 43.57 3.01
5378 5446 7.500992 TGTGTCCTAGACAGATCCAAATAATC 58.499 38.462 0.00 0.00 43.57 1.75
5382 5450 5.965033 ATGTGTCCTAGACAGATCCAAAT 57.035 39.130 1.81 0.00 41.63 2.32
5388 5456 8.610369 TCATATCTAGATGTGTCCTAGACAGAT 58.390 37.037 23.88 7.05 46.68 2.90
5389 5457 7.880713 GTCATATCTAGATGTGTCCTAGACAGA 59.119 40.741 23.88 0.00 43.57 3.41
5390 5458 7.663493 TGTCATATCTAGATGTGTCCTAGACAG 59.337 40.741 23.88 0.73 43.57 3.51
5391 5459 7.518188 TGTCATATCTAGATGTGTCCTAGACA 58.482 38.462 23.88 17.81 43.57 3.41
5392 5460 7.987750 TGTCATATCTAGATGTGTCCTAGAC 57.012 40.000 23.88 15.91 43.57 2.59
5412 5480 9.546428 CAGGTTAGATGTCACATAATTATGTCA 57.454 33.333 24.99 20.87 44.57 3.58
5413 5481 9.764363 TCAGGTTAGATGTCACATAATTATGTC 57.236 33.333 24.99 16.58 44.57 3.06
5429 5497 7.776969 ACAAGCATAATGAACATCAGGTTAGAT 59.223 33.333 0.00 0.00 40.63 1.98
5430 5498 7.066163 CACAAGCATAATGAACATCAGGTTAGA 59.934 37.037 0.00 0.00 40.63 2.10
5431 5499 7.066163 TCACAAGCATAATGAACATCAGGTTAG 59.934 37.037 0.00 0.00 40.63 2.34
5432 5500 6.883756 TCACAAGCATAATGAACATCAGGTTA 59.116 34.615 0.00 0.00 40.63 2.85
5433 5501 5.711506 TCACAAGCATAATGAACATCAGGTT 59.288 36.000 0.00 0.00 44.10 3.50
5434 5502 5.255687 TCACAAGCATAATGAACATCAGGT 58.744 37.500 0.00 0.00 0.00 4.00
5435 5503 5.823209 TCACAAGCATAATGAACATCAGG 57.177 39.130 0.00 0.00 0.00 3.86
5436 5504 7.260558 AGATCACAAGCATAATGAACATCAG 57.739 36.000 0.00 0.00 0.00 2.90
5437 5505 8.913487 ATAGATCACAAGCATAATGAACATCA 57.087 30.769 0.00 0.00 0.00 3.07
5485 5553 7.519328 GCTTAAGTCTGTACCGATGTTCAAAAA 60.519 37.037 4.02 0.00 0.00 1.94
5486 5554 6.073440 GCTTAAGTCTGTACCGATGTTCAAAA 60.073 38.462 4.02 0.00 0.00 2.44
5487 5555 5.407387 GCTTAAGTCTGTACCGATGTTCAAA 59.593 40.000 4.02 0.00 0.00 2.69
5488 5556 4.927425 GCTTAAGTCTGTACCGATGTTCAA 59.073 41.667 4.02 0.00 0.00 2.69
5489 5557 4.491676 GCTTAAGTCTGTACCGATGTTCA 58.508 43.478 4.02 0.00 0.00 3.18
5490 5558 3.546670 CGCTTAAGTCTGTACCGATGTTC 59.453 47.826 4.02 0.00 0.00 3.18
5491 5559 3.508762 CGCTTAAGTCTGTACCGATGTT 58.491 45.455 4.02 0.00 0.00 2.71
5492 5560 2.734492 GCGCTTAAGTCTGTACCGATGT 60.734 50.000 0.00 0.00 0.00 3.06
5493 5561 1.852895 GCGCTTAAGTCTGTACCGATG 59.147 52.381 0.00 0.00 0.00 3.84
5494 5562 1.749634 AGCGCTTAAGTCTGTACCGAT 59.250 47.619 2.64 0.00 0.00 4.18
5495 5563 1.131883 GAGCGCTTAAGTCTGTACCGA 59.868 52.381 13.26 0.00 0.00 4.69
5496 5564 1.135489 TGAGCGCTTAAGTCTGTACCG 60.135 52.381 13.26 0.00 0.00 4.02
5497 5565 2.649331 TGAGCGCTTAAGTCTGTACC 57.351 50.000 13.26 0.00 0.00 3.34
5498 5566 4.499758 GTGTATGAGCGCTTAAGTCTGTAC 59.500 45.833 13.26 6.39 0.00 2.90
5499 5567 4.398358 AGTGTATGAGCGCTTAAGTCTGTA 59.602 41.667 13.26 0.00 0.00 2.74
5500 5568 3.193691 AGTGTATGAGCGCTTAAGTCTGT 59.806 43.478 13.26 0.00 0.00 3.41
5501 5569 3.775202 AGTGTATGAGCGCTTAAGTCTG 58.225 45.455 13.26 0.00 0.00 3.51
5502 5570 3.697045 AGAGTGTATGAGCGCTTAAGTCT 59.303 43.478 13.26 7.66 0.00 3.24
5503 5571 4.035278 AGAGTGTATGAGCGCTTAAGTC 57.965 45.455 13.26 5.15 0.00 3.01
5504 5572 3.444034 TGAGAGTGTATGAGCGCTTAAGT 59.556 43.478 13.26 0.00 0.00 2.24
5505 5573 3.794028 GTGAGAGTGTATGAGCGCTTAAG 59.206 47.826 13.26 0.00 0.00 1.85
5506 5574 3.192633 TGTGAGAGTGTATGAGCGCTTAA 59.807 43.478 13.26 3.18 0.00 1.85
5507 5575 2.752903 TGTGAGAGTGTATGAGCGCTTA 59.247 45.455 13.26 8.30 0.00 3.09
5508 5576 1.546029 TGTGAGAGTGTATGAGCGCTT 59.454 47.619 13.26 0.00 0.00 4.68
5509 5577 1.177401 TGTGAGAGTGTATGAGCGCT 58.823 50.000 11.27 11.27 0.00 5.92
5510 5578 2.123342 GATGTGAGAGTGTATGAGCGC 58.877 52.381 0.00 0.00 0.00 5.92
5511 5579 3.427161 TGATGTGAGAGTGTATGAGCG 57.573 47.619 0.00 0.00 0.00 5.03
5512 5580 4.803088 GTCTTGATGTGAGAGTGTATGAGC 59.197 45.833 0.00 0.00 0.00 4.26
5513 5581 6.206395 AGTCTTGATGTGAGAGTGTATGAG 57.794 41.667 0.00 0.00 0.00 2.90
5514 5582 6.209391 TCAAGTCTTGATGTGAGAGTGTATGA 59.791 38.462 11.36 0.00 34.08 2.15
5515 5583 6.393171 TCAAGTCTTGATGTGAGAGTGTATG 58.607 40.000 11.36 0.00 34.08 2.39
5516 5584 6.596309 TCAAGTCTTGATGTGAGAGTGTAT 57.404 37.500 11.36 0.00 34.08 2.29
5517 5585 6.216569 GTTCAAGTCTTGATGTGAGAGTGTA 58.783 40.000 15.95 0.00 39.84 2.90
5518 5586 4.944619 TCAAGTCTTGATGTGAGAGTGT 57.055 40.909 11.36 0.00 34.08 3.55
5519 5587 4.450419 GGTTCAAGTCTTGATGTGAGAGTG 59.550 45.833 15.95 0.00 39.84 3.51
5520 5588 4.503991 GGGTTCAAGTCTTGATGTGAGAGT 60.504 45.833 15.95 0.00 39.84 3.24
5521 5589 3.999663 GGGTTCAAGTCTTGATGTGAGAG 59.000 47.826 15.95 0.00 39.84 3.20
5522 5590 3.648067 AGGGTTCAAGTCTTGATGTGAGA 59.352 43.478 15.95 0.00 39.84 3.27
5523 5591 3.750130 CAGGGTTCAAGTCTTGATGTGAG 59.250 47.826 15.95 3.75 39.84 3.51
5524 5592 3.496692 CCAGGGTTCAAGTCTTGATGTGA 60.497 47.826 15.95 0.00 39.84 3.58
5525 5593 2.816087 CCAGGGTTCAAGTCTTGATGTG 59.184 50.000 15.95 10.48 39.84 3.21
5526 5594 2.443255 ACCAGGGTTCAAGTCTTGATGT 59.557 45.455 15.95 4.77 39.84 3.06
5527 5595 2.816087 CACCAGGGTTCAAGTCTTGATG 59.184 50.000 15.95 10.85 39.84 3.07
5528 5596 2.224867 CCACCAGGGTTCAAGTCTTGAT 60.225 50.000 15.95 0.00 39.84 2.57
5529 5597 1.142870 CCACCAGGGTTCAAGTCTTGA 59.857 52.381 11.36 11.36 38.04 3.02
5530 5598 1.609208 CCACCAGGGTTCAAGTCTTG 58.391 55.000 6.21 6.21 0.00 3.02
5542 5610 1.343069 GGTATCTCTAGCCCACCAGG 58.657 60.000 0.00 0.00 39.47 4.45
5543 5611 1.689273 GTGGTATCTCTAGCCCACCAG 59.311 57.143 5.80 0.00 41.20 4.00
5544 5612 1.007842 TGTGGTATCTCTAGCCCACCA 59.992 52.381 5.31 6.93 45.41 4.17
5545 5613 1.689273 CTGTGGTATCTCTAGCCCACC 59.311 57.143 5.31 4.94 45.41 4.61
5546 5614 2.389715 ACTGTGGTATCTCTAGCCCAC 58.610 52.381 0.00 0.00 46.04 4.61
5547 5615 2.848678 ACTGTGGTATCTCTAGCCCA 57.151 50.000 0.00 0.00 0.00 5.36
5548 5616 2.365941 GGAACTGTGGTATCTCTAGCCC 59.634 54.545 0.00 0.00 0.00 5.19
5549 5617 3.301274 AGGAACTGTGGTATCTCTAGCC 58.699 50.000 0.00 0.00 37.18 3.93
5550 5618 4.211920 AGAGGAACTGTGGTATCTCTAGC 58.788 47.826 0.00 0.00 41.55 3.42
5551 5619 7.339721 TGTTTAGAGGAACTGTGGTATCTCTAG 59.660 40.741 0.00 0.00 41.55 2.43
5552 5620 7.179966 TGTTTAGAGGAACTGTGGTATCTCTA 58.820 38.462 0.00 0.00 41.55 2.43
5553 5621 6.017192 TGTTTAGAGGAACTGTGGTATCTCT 58.983 40.000 0.00 0.00 41.55 3.10
5554 5622 6.282199 TGTTTAGAGGAACTGTGGTATCTC 57.718 41.667 0.00 0.00 41.55 2.75
5555 5623 6.875972 ATGTTTAGAGGAACTGTGGTATCT 57.124 37.500 0.00 0.00 41.55 1.98
5556 5624 7.103641 TGAATGTTTAGAGGAACTGTGGTATC 58.896 38.462 0.00 0.00 41.55 2.24
5557 5625 7.016153 TGAATGTTTAGAGGAACTGTGGTAT 57.984 36.000 0.00 0.00 41.55 2.73
5558 5626 6.428083 TGAATGTTTAGAGGAACTGTGGTA 57.572 37.500 0.00 0.00 41.55 3.25
5559 5627 5.304686 TGAATGTTTAGAGGAACTGTGGT 57.695 39.130 0.00 0.00 41.55 4.16
5560 5628 5.048713 GGTTGAATGTTTAGAGGAACTGTGG 60.049 44.000 0.00 0.00 41.55 4.17
5561 5629 5.530915 TGGTTGAATGTTTAGAGGAACTGTG 59.469 40.000 0.00 0.00 41.55 3.66
5562 5630 5.531287 GTGGTTGAATGTTTAGAGGAACTGT 59.469 40.000 0.00 0.00 41.55 3.55
5563 5631 5.530915 TGTGGTTGAATGTTTAGAGGAACTG 59.469 40.000 0.00 0.00 41.55 3.16
5564 5632 9.493173 ACCTGTGGTTGAATGTTTAGAGGAACT 62.493 40.741 0.00 0.00 33.33 3.01
5565 5633 5.048713 CCTGTGGTTGAATGTTTAGAGGAAC 60.049 44.000 0.00 0.00 0.00 3.62
5566 5634 5.070001 CCTGTGGTTGAATGTTTAGAGGAA 58.930 41.667 0.00 0.00 0.00 3.36
5567 5635 4.104102 ACCTGTGGTTGAATGTTTAGAGGA 59.896 41.667 0.00 0.00 27.29 3.71
5568 5636 4.398319 ACCTGTGGTTGAATGTTTAGAGG 58.602 43.478 0.00 0.00 27.29 3.69
5584 5652 0.029300 CAACAGCGAACCAACCTGTG 59.971 55.000 0.00 0.00 39.56 3.66
5585 5653 0.393808 ACAACAGCGAACCAACCTGT 60.394 50.000 0.00 0.00 41.26 4.00
5586 5654 0.029300 CACAACAGCGAACCAACCTG 59.971 55.000 0.00 0.00 0.00 4.00
5587 5655 0.107410 TCACAACAGCGAACCAACCT 60.107 50.000 0.00 0.00 0.00 3.50
5588 5656 0.951558 ATCACAACAGCGAACCAACC 59.048 50.000 0.00 0.00 0.00 3.77
5589 5657 4.419522 AATATCACAACAGCGAACCAAC 57.580 40.909 0.00 0.00 0.00 3.77
5590 5658 6.372937 TCATAAATATCACAACAGCGAACCAA 59.627 34.615 0.00 0.00 0.00 3.67
5591 5659 5.877564 TCATAAATATCACAACAGCGAACCA 59.122 36.000 0.00 0.00 0.00 3.67
5592 5660 6.257849 TCTCATAAATATCACAACAGCGAACC 59.742 38.462 0.00 0.00 0.00 3.62
5593 5661 7.234187 TCTCATAAATATCACAACAGCGAAC 57.766 36.000 0.00 0.00 0.00 3.95
5594 5662 6.018751 GCTCTCATAAATATCACAACAGCGAA 60.019 38.462 0.00 0.00 0.00 4.70
5595 5663 5.463392 GCTCTCATAAATATCACAACAGCGA 59.537 40.000 0.00 0.00 0.00 4.93
5596 5664 5.464722 AGCTCTCATAAATATCACAACAGCG 59.535 40.000 0.00 0.00 0.00 5.18
5597 5665 6.857777 AGCTCTCATAAATATCACAACAGC 57.142 37.500 0.00 0.00 0.00 4.40
5598 5666 9.755804 TCTAAGCTCTCATAAATATCACAACAG 57.244 33.333 0.00 0.00 0.00 3.16
5602 5670 9.702494 CACATCTAAGCTCTCATAAATATCACA 57.298 33.333 0.00 0.00 0.00 3.58
5603 5671 9.920133 TCACATCTAAGCTCTCATAAATATCAC 57.080 33.333 0.00 0.00 0.00 3.06
5613 5681 9.579932 TCTAAAGATATCACATCTAAGCTCTCA 57.420 33.333 5.32 0.00 0.00 3.27
5794 5862 4.038080 CCTTTTCCCCGCACACGC 62.038 66.667 0.00 0.00 38.22 5.34
5797 5865 2.123683 TTGCCTTTTCCCCGCACA 60.124 55.556 0.00 0.00 30.84 4.57
5810 5878 0.110733 TACGCGCGTTAAAACTTGCC 60.111 50.000 42.10 0.00 0.00 4.52
5814 5882 1.063031 GTCCTACGCGCGTTAAAACT 58.937 50.000 42.10 17.12 0.00 2.66
5816 5884 1.343510 CCGTCCTACGCGCGTTAAAA 61.344 55.000 42.10 22.42 40.91 1.52
5821 5889 4.347453 AAACCGTCCTACGCGCGT 62.347 61.111 39.05 39.05 40.91 6.01
5824 5892 3.484547 GCCAAACCGTCCTACGCG 61.485 66.667 3.53 3.53 40.91 6.01
5825 5893 3.122971 GGCCAAACCGTCCTACGC 61.123 66.667 0.00 0.00 40.91 4.42
5826 5894 1.740296 CAGGCCAAACCGTCCTACG 60.740 63.158 5.01 0.00 46.52 3.51
5827 5895 1.376812 CCAGGCCAAACCGTCCTAC 60.377 63.158 5.01 0.00 46.52 3.18
5828 5896 2.598787 CCCAGGCCAAACCGTCCTA 61.599 63.158 5.01 0.00 46.52 2.94
5829 5897 3.966543 CCCAGGCCAAACCGTCCT 61.967 66.667 5.01 0.00 46.52 3.85
5830 5898 3.920093 CTCCCAGGCCAAACCGTCC 62.920 68.421 5.01 0.00 46.52 4.79
5831 5899 2.359975 CTCCCAGGCCAAACCGTC 60.360 66.667 5.01 0.00 46.52 4.79
5832 5900 1.789576 ATTCTCCCAGGCCAAACCGT 61.790 55.000 5.01 0.00 46.52 4.83
5860 5942 1.863446 GCGCGTGCGATTCTTTTCC 60.863 57.895 19.66 0.00 42.83 3.13
5871 5953 3.085010 CAAAACTGTCGCGCGTGC 61.085 61.111 30.98 23.08 37.91 5.34
5879 5961 0.307760 CACCTCACGCCAAAACTGTC 59.692 55.000 0.00 0.00 0.00 3.51
5880 5962 0.393808 ACACCTCACGCCAAAACTGT 60.394 50.000 0.00 0.00 0.00 3.55
5881 5963 0.307760 GACACCTCACGCCAAAACTG 59.692 55.000 0.00 0.00 0.00 3.16
5882 5964 0.818040 GGACACCTCACGCCAAAACT 60.818 55.000 0.00 0.00 0.00 2.66
5884 5966 1.890041 CGGACACCTCACGCCAAAA 60.890 57.895 0.00 0.00 0.00 2.44
5885 5967 2.280524 CGGACACCTCACGCCAAA 60.281 61.111 0.00 0.00 0.00 3.28
5886 5968 4.308458 CCGGACACCTCACGCCAA 62.308 66.667 0.00 0.00 0.00 4.52
5897 5987 2.007113 TTTATAGAGCGCGCCGGACA 62.007 55.000 30.33 9.38 0.00 4.02
5912 6002 2.021380 CTCGCGCGCGCTTTTTAT 59.979 55.556 45.97 0.00 39.59 1.40
5913 6003 4.787299 GCTCGCGCGCGCTTTTTA 62.787 61.111 45.97 27.84 39.59 1.52
5965 6057 2.532715 AGGAAGAAGGGGGCAGCA 60.533 61.111 0.00 0.00 0.00 4.41
5968 6060 2.203938 ACGAGGAAGAAGGGGGCA 60.204 61.111 0.00 0.00 0.00 5.36
5975 6067 1.883732 CGCTGGAGACGAGGAAGAA 59.116 57.895 0.00 0.00 0.00 2.52
5977 6069 2.202676 GCGCTGGAGACGAGGAAG 60.203 66.667 0.00 0.00 0.00 3.46
5985 6077 4.802051 GCAATGGGGCGCTGGAGA 62.802 66.667 7.64 0.00 0.00 3.71
6127 6219 2.898729 ACATCATCGAAGCGGATCTT 57.101 45.000 0.00 0.00 37.83 2.40
6137 6229 1.596260 GACCGAGACGTACATCATCGA 59.404 52.381 10.80 0.00 35.47 3.59
6139 6231 2.348685 CGAGACCGAGACGTACATCATC 60.349 54.545 0.00 0.00 38.22 2.92
6140 6232 1.598132 CGAGACCGAGACGTACATCAT 59.402 52.381 0.00 0.00 38.22 2.45
6144 6236 1.742880 CCCGAGACCGAGACGTACA 60.743 63.158 0.00 0.00 38.22 2.90
6147 6239 2.745492 GTCCCGAGACCGAGACGT 60.745 66.667 0.00 0.00 34.03 4.34
6166 6258 1.294138 CCTCGTGGGCGGTCTAAAA 59.706 57.895 0.00 0.00 38.89 1.52
6220 6312 4.430765 CTACGAACGTGGCCGGCT 62.431 66.667 28.56 5.35 38.78 5.52
6222 6314 1.876714 CATCTACGAACGTGGCCGG 60.877 63.158 10.14 0.00 38.78 6.13
6223 6315 0.457166 TTCATCTACGAACGTGGCCG 60.457 55.000 10.14 0.00 40.83 6.13
6231 6323 4.348656 CGTCCGAGAAATTCATCTACGAA 58.651 43.478 0.00 0.00 33.07 3.85
6232 6324 3.791122 GCGTCCGAGAAATTCATCTACGA 60.791 47.826 12.63 0.00 33.07 3.43
6235 6327 3.548214 CGAGCGTCCGAGAAATTCATCTA 60.548 47.826 0.00 0.00 0.00 1.98
6243 6335 1.138883 CATCCGAGCGTCCGAGAAA 59.861 57.895 0.34 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.