Multiple sequence alignment - TraesCS2A01G323800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G323800 chr2A 100.000 3392 0 0 1653 5044 554079770 554076379 0.000000e+00 6264.0
1 TraesCS2A01G323800 chr2A 84.735 1356 150 20 2753 4093 554377416 554376103 0.000000e+00 1304.0
2 TraesCS2A01G323800 chr2A 100.000 622 0 0 752 1373 554080671 554080050 0.000000e+00 1149.0
3 TraesCS2A01G323800 chr2A 100.000 552 0 0 1 552 554081422 554080871 0.000000e+00 1020.0
4 TraesCS2A01G323800 chr2A 92.857 308 21 1 108 414 139840343 139840650 3.580000e-121 446.0
5 TraesCS2A01G323800 chr2A 92.857 182 13 0 2557 2738 554377647 554377466 1.080000e-66 265.0
6 TraesCS2A01G323800 chr2A 87.037 162 11 2 4141 4292 554138706 554138545 1.870000e-39 174.0
7 TraesCS2A01G323800 chr2A 87.013 154 10 2 4141 4284 554377993 554378146 1.120000e-36 165.0
8 TraesCS2A01G323800 chr2A 96.875 96 2 1 22 117 139840172 139840266 5.230000e-35 159.0
9 TraesCS2A01G323800 chr2D 94.077 2735 94 27 1653 4357 431926091 431923395 0.000000e+00 4091.0
10 TraesCS2A01G323800 chr2D 95.700 1442 33 6 3161 4574 433021246 433022686 0.000000e+00 2292.0
11 TraesCS2A01G323800 chr2D 92.675 1256 52 8 1653 2882 433017044 433018285 0.000000e+00 1773.0
12 TraesCS2A01G323800 chr2D 93.740 639 23 6 752 1373 431926816 431926178 0.000000e+00 942.0
13 TraesCS2A01G323800 chr2D 93.750 592 14 10 802 1373 433016370 433016958 0.000000e+00 867.0
14 TraesCS2A01G323800 chr2D 88.381 525 16 19 4370 4850 433022687 433023210 1.560000e-164 590.0
15 TraesCS2A01G323800 chr2D 95.506 267 7 2 4321 4583 431923402 431923137 6.040000e-114 422.0
16 TraesCS2A01G323800 chr2D 97.321 224 5 1 2878 3101 433021013 433021235 3.690000e-101 379.0
17 TraesCS2A01G323800 chr2D 91.667 228 13 3 4626 4850 431923128 431922904 1.360000e-80 311.0
18 TraesCS2A01G323800 chr2D 94.326 141 4 1 4904 5044 433023313 433023449 3.960000e-51 213.0
19 TraesCS2A01G323800 chr2D 92.908 141 6 1 4904 5044 431922794 431922658 8.560000e-48 202.0
20 TraesCS2A01G323800 chr2D 93.478 46 2 1 4949 4993 431922833 431922788 3.260000e-07 67.6
21 TraesCS2A01G323800 chr2B 94.652 1496 51 9 3061 4551 511158699 511157228 0.000000e+00 2292.0
22 TraesCS2A01G323800 chr2B 92.735 1459 52 14 1653 3078 511160543 511159106 0.000000e+00 2058.0
23 TraesCS2A01G323800 chr2B 85.034 1323 170 19 2784 4094 511038545 511037239 0.000000e+00 1321.0
24 TraesCS2A01G323800 chr2B 90.070 574 32 7 821 1372 511161200 511160630 0.000000e+00 721.0
25 TraesCS2A01G323800 chr2B 82.692 520 62 13 877 1373 511120605 511120091 2.160000e-118 436.0
26 TraesCS2A01G323800 chr2B 90.625 288 8 8 4581 4850 511157231 511156945 1.030000e-96 364.0
27 TraesCS2A01G323800 chr2B 94.554 202 9 1 3080 3281 787960589 787960788 1.360000e-80 311.0
28 TraesCS2A01G323800 chr2B 77.426 474 57 27 1656 2091 511120001 511119540 2.350000e-58 237.0
29 TraesCS2A01G323800 chr2B 95.035 141 3 1 4904 5044 511156833 511156697 8.500000e-53 219.0
30 TraesCS2A01G323800 chr4A 94.911 393 20 0 22 414 509347657 509347265 2.580000e-172 616.0
31 TraesCS2A01G323800 chr4A 89.342 319 22 1 108 414 472962493 472962811 1.700000e-104 390.0
32 TraesCS2A01G323800 chr4A 97.778 90 2 0 22 111 472962328 472962417 6.760000e-34 156.0
33 TraesCS2A01G323800 chr1B 94.911 393 20 0 22 414 405180754 405180362 2.580000e-172 616.0
34 TraesCS2A01G323800 chr1B 90.879 307 25 3 110 414 205873349 205873654 4.700000e-110 409.0
35 TraesCS2A01G323800 chr1B 95.833 96 3 1 22 117 205873176 205873270 2.430000e-33 154.0
36 TraesCS2A01G323800 chr6D 93.485 307 17 3 108 414 4357813 4358116 2.140000e-123 453.0
37 TraesCS2A01G323800 chr6D 97.917 96 1 1 22 117 4357642 4357736 1.120000e-36 165.0
38 TraesCS2A01G323800 chr5B 100.000 28 0 0 4339 4366 480096904 480096931 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G323800 chr2A 554076379 554081422 5043 True 2811.000000 6264 100.000000 1 5044 3 chr2A.!!$R2 5043
1 TraesCS2A01G323800 chr2A 554376103 554377647 1544 True 784.500000 1304 88.796000 2557 4093 2 chr2A.!!$R3 1536
2 TraesCS2A01G323800 chr2D 433016370 433023449 7079 False 1019.000000 2292 93.692167 802 5044 6 chr2D.!!$F1 4242
3 TraesCS2A01G323800 chr2D 431922658 431926816 4158 True 1005.933333 4091 93.562667 752 5044 6 chr2D.!!$R1 4292
4 TraesCS2A01G323800 chr2B 511037239 511038545 1306 True 1321.000000 1321 85.034000 2784 4094 1 chr2B.!!$R1 1310
5 TraesCS2A01G323800 chr2B 511156697 511161200 4503 True 1130.800000 2292 92.623400 821 5044 5 chr2B.!!$R3 4223
6 TraesCS2A01G323800 chr2B 511119540 511120605 1065 True 336.500000 436 80.059000 877 2091 2 chr2B.!!$R2 1214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.109132 GGTTGATTTTGCTCTGCCGG 60.109 55.000 0.0 0.0 0.00 6.13 F
350 351 0.112412 CAGGGGGTTGCTTAACTGGT 59.888 55.000 0.0 0.0 0.00 4.00 F
1814 1853 0.108615 ATCAGCCAAGAGGTTCGTCG 60.109 55.000 0.0 0.0 37.19 5.12 F
1831 1870 3.003378 TCGTCGCTATTGGTATCTGTCTG 59.997 47.826 0.0 0.0 0.00 3.51 F
2345 2457 3.056328 GGAGCGTTTGGGAGGTGC 61.056 66.667 0.0 0.0 0.00 5.01 F
2787 2935 0.846693 AACTTGTGCTCCCAACTCCT 59.153 50.000 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 1735 0.036164 TACACATCAAGCGGCCACTT 59.964 50.000 2.24 0.22 0.00 3.16 R
2320 2432 1.953686 TCCCAAACGCTCCTTGAAAAG 59.046 47.619 0.00 0.00 45.69 2.27 R
2745 2858 1.420138 GGTTGTGGAGTTCTCAAGGGA 59.580 52.381 2.24 0.00 0.00 4.20 R
2746 2859 1.545651 GGGTTGTGGAGTTCTCAAGGG 60.546 57.143 2.24 0.00 0.00 3.95 R
3423 6737 2.180946 TAGGGATCCTGCATCACACT 57.819 50.000 12.58 0.00 37.39 3.55 R
4623 8180 1.089920 CTATGCACAGTCTGGTTGGC 58.910 55.000 4.53 3.21 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.915508 TGACGTATCAAATTAGCAGTATTTGG 58.084 34.615 14.31 5.24 41.24 3.28
40 41 7.011950 TGACGTATCAAATTAGCAGTATTTGGG 59.988 37.037 14.31 7.52 41.24 4.12
41 42 7.051623 ACGTATCAAATTAGCAGTATTTGGGA 58.948 34.615 14.31 4.65 41.24 4.37
42 43 7.719633 ACGTATCAAATTAGCAGTATTTGGGAT 59.280 33.333 14.31 7.47 41.24 3.85
43 44 8.017373 CGTATCAAATTAGCAGTATTTGGGATG 58.983 37.037 14.31 7.57 41.24 3.51
44 45 7.902920 ATCAAATTAGCAGTATTTGGGATGT 57.097 32.000 14.31 0.39 41.24 3.06
45 46 8.995027 ATCAAATTAGCAGTATTTGGGATGTA 57.005 30.769 14.31 0.63 41.24 2.29
46 47 8.995027 TCAAATTAGCAGTATTTGGGATGTAT 57.005 30.769 14.31 0.00 41.24 2.29
47 48 8.849168 TCAAATTAGCAGTATTTGGGATGTATG 58.151 33.333 14.31 0.00 41.24 2.39
48 49 8.849168 CAAATTAGCAGTATTTGGGATGTATGA 58.151 33.333 9.18 0.00 38.64 2.15
49 50 9.592196 AAATTAGCAGTATTTGGGATGTATGAT 57.408 29.630 0.00 0.00 0.00 2.45
50 51 7.984422 TTAGCAGTATTTGGGATGTATGATG 57.016 36.000 0.00 0.00 0.00 3.07
51 52 5.945310 AGCAGTATTTGGGATGTATGATGT 58.055 37.500 0.00 0.00 0.00 3.06
52 53 6.367983 AGCAGTATTTGGGATGTATGATGTT 58.632 36.000 0.00 0.00 0.00 2.71
53 54 6.263842 AGCAGTATTTGGGATGTATGATGTTG 59.736 38.462 0.00 0.00 0.00 3.33
54 55 6.441274 CAGTATTTGGGATGTATGATGTTGC 58.559 40.000 0.00 0.00 0.00 4.17
55 56 6.263842 CAGTATTTGGGATGTATGATGTTGCT 59.736 38.462 0.00 0.00 0.00 3.91
56 57 5.779529 ATTTGGGATGTATGATGTTGCTC 57.220 39.130 0.00 0.00 0.00 4.26
57 58 3.929955 TGGGATGTATGATGTTGCTCA 57.070 42.857 0.00 0.00 0.00 4.26
58 59 4.442401 TGGGATGTATGATGTTGCTCAT 57.558 40.909 0.00 0.00 39.22 2.90
59 60 4.795469 TGGGATGTATGATGTTGCTCATT 58.205 39.130 0.00 0.00 37.13 2.57
60 61 5.202765 TGGGATGTATGATGTTGCTCATTT 58.797 37.500 0.00 0.00 37.13 2.32
61 62 5.657745 TGGGATGTATGATGTTGCTCATTTT 59.342 36.000 0.00 0.00 37.13 1.82
62 63 6.183360 TGGGATGTATGATGTTGCTCATTTTC 60.183 38.462 0.00 0.00 37.13 2.29
63 64 6.040166 GGGATGTATGATGTTGCTCATTTTCT 59.960 38.462 0.00 0.00 37.13 2.52
64 65 7.229306 GGGATGTATGATGTTGCTCATTTTCTA 59.771 37.037 0.00 0.00 37.13 2.10
65 66 8.790718 GGATGTATGATGTTGCTCATTTTCTAT 58.209 33.333 0.00 0.00 37.13 1.98
66 67 9.608617 GATGTATGATGTTGCTCATTTTCTATG 57.391 33.333 0.00 0.00 37.13 2.23
67 68 8.510243 TGTATGATGTTGCTCATTTTCTATGT 57.490 30.769 0.00 0.00 37.13 2.29
68 69 8.400186 TGTATGATGTTGCTCATTTTCTATGTG 58.600 33.333 0.00 0.00 37.13 3.21
69 70 7.634671 ATGATGTTGCTCATTTTCTATGTGA 57.365 32.000 0.00 0.00 36.83 3.58
70 71 7.451501 TGATGTTGCTCATTTTCTATGTGAA 57.548 32.000 0.00 0.00 36.83 3.18
71 72 8.058667 TGATGTTGCTCATTTTCTATGTGAAT 57.941 30.769 0.00 0.00 36.83 2.57
72 73 8.525316 TGATGTTGCTCATTTTCTATGTGAATT 58.475 29.630 0.00 0.00 36.83 2.17
73 74 8.697846 ATGTTGCTCATTTTCTATGTGAATTG 57.302 30.769 0.00 0.00 34.24 2.32
74 75 7.092079 TGTTGCTCATTTTCTATGTGAATTGG 58.908 34.615 0.00 0.00 34.24 3.16
75 76 5.653507 TGCTCATTTTCTATGTGAATTGGC 58.346 37.500 0.00 0.00 34.24 4.52
76 77 5.185442 TGCTCATTTTCTATGTGAATTGGCA 59.815 36.000 0.00 0.00 34.24 4.92
77 78 5.747197 GCTCATTTTCTATGTGAATTGGCAG 59.253 40.000 0.00 0.00 34.24 4.85
78 79 6.626623 GCTCATTTTCTATGTGAATTGGCAGT 60.627 38.462 0.00 0.00 34.24 4.40
79 80 7.415541 GCTCATTTTCTATGTGAATTGGCAGTA 60.416 37.037 0.00 0.00 34.24 2.74
80 81 8.523915 TCATTTTCTATGTGAATTGGCAGTAT 57.476 30.769 0.00 0.00 34.24 2.12
81 82 8.970020 TCATTTTCTATGTGAATTGGCAGTATT 58.030 29.630 0.00 0.00 34.24 1.89
82 83 9.241317 CATTTTCTATGTGAATTGGCAGTATTC 57.759 33.333 5.19 5.19 34.24 1.75
83 84 8.579850 TTTTCTATGTGAATTGGCAGTATTCT 57.420 30.769 11.92 0.00 34.24 2.40
84 85 7.792374 TTCTATGTGAATTGGCAGTATTCTC 57.208 36.000 11.92 9.34 34.00 2.87
85 86 6.888105 TCTATGTGAATTGGCAGTATTCTCA 58.112 36.000 15.18 15.18 38.84 3.27
86 87 6.988580 TCTATGTGAATTGGCAGTATTCTCAG 59.011 38.462 16.92 8.67 38.28 3.35
87 88 4.910195 TGTGAATTGGCAGTATTCTCAGT 58.090 39.130 11.92 0.00 33.20 3.41
88 89 4.696877 TGTGAATTGGCAGTATTCTCAGTG 59.303 41.667 11.92 0.00 33.20 3.66
89 90 4.697352 GTGAATTGGCAGTATTCTCAGTGT 59.303 41.667 11.92 0.00 34.00 3.55
90 91 5.182001 GTGAATTGGCAGTATTCTCAGTGTT 59.818 40.000 11.92 0.00 34.00 3.32
91 92 5.181811 TGAATTGGCAGTATTCTCAGTGTTG 59.818 40.000 11.92 0.00 34.00 3.33
92 93 3.769739 TGGCAGTATTCTCAGTGTTGT 57.230 42.857 0.00 0.00 0.00 3.32
93 94 4.882842 TGGCAGTATTCTCAGTGTTGTA 57.117 40.909 0.00 0.00 0.00 2.41
94 95 5.420725 TGGCAGTATTCTCAGTGTTGTAT 57.579 39.130 0.00 0.00 0.00 2.29
95 96 5.804639 TGGCAGTATTCTCAGTGTTGTATT 58.195 37.500 0.00 0.00 0.00 1.89
96 97 6.941857 TGGCAGTATTCTCAGTGTTGTATTA 58.058 36.000 0.00 0.00 0.00 0.98
97 98 7.041721 TGGCAGTATTCTCAGTGTTGTATTAG 58.958 38.462 0.00 0.00 0.00 1.73
98 99 6.018669 GGCAGTATTCTCAGTGTTGTATTAGC 60.019 42.308 0.00 0.00 0.00 3.09
99 100 6.758886 GCAGTATTCTCAGTGTTGTATTAGCT 59.241 38.462 0.00 0.00 0.00 3.32
100 101 7.254252 GCAGTATTCTCAGTGTTGTATTAGCTG 60.254 40.741 0.00 0.00 0.00 4.24
101 102 7.976175 CAGTATTCTCAGTGTTGTATTAGCTGA 59.024 37.037 0.00 0.00 35.29 4.26
102 103 7.976734 AGTATTCTCAGTGTTGTATTAGCTGAC 59.023 37.037 0.00 0.00 33.34 3.51
103 104 5.073311 TCTCAGTGTTGTATTAGCTGACC 57.927 43.478 0.00 0.00 33.34 4.02
104 105 3.845178 TCAGTGTTGTATTAGCTGACCG 58.155 45.455 0.00 0.00 32.09 4.79
105 106 3.508402 TCAGTGTTGTATTAGCTGACCGA 59.492 43.478 0.00 0.00 32.09 4.69
106 107 4.021807 TCAGTGTTGTATTAGCTGACCGAA 60.022 41.667 0.00 0.00 32.09 4.30
107 108 4.688879 CAGTGTTGTATTAGCTGACCGAAA 59.311 41.667 0.00 0.00 0.00 3.46
108 109 4.689345 AGTGTTGTATTAGCTGACCGAAAC 59.311 41.667 0.00 0.00 0.00 2.78
109 110 4.689345 GTGTTGTATTAGCTGACCGAAACT 59.311 41.667 0.00 0.00 0.00 2.66
110 111 4.688879 TGTTGTATTAGCTGACCGAAACTG 59.311 41.667 0.00 0.00 0.00 3.16
111 112 4.530710 TGTATTAGCTGACCGAAACTGT 57.469 40.909 0.00 0.00 0.00 3.55
112 113 5.648178 TGTATTAGCTGACCGAAACTGTA 57.352 39.130 0.00 0.00 0.00 2.74
113 114 5.647589 TGTATTAGCTGACCGAAACTGTAG 58.352 41.667 0.00 0.00 0.00 2.74
114 115 2.649331 TAGCTGACCGAAACTGTAGC 57.351 50.000 0.00 0.00 0.00 3.58
115 116 0.679505 AGCTGACCGAAACTGTAGCA 59.320 50.000 0.00 0.00 33.81 3.49
116 117 1.276421 AGCTGACCGAAACTGTAGCAT 59.724 47.619 0.00 0.00 33.81 3.79
117 118 2.076863 GCTGACCGAAACTGTAGCATT 58.923 47.619 0.00 0.00 0.00 3.56
118 119 2.484264 GCTGACCGAAACTGTAGCATTT 59.516 45.455 0.00 0.00 0.00 2.32
119 120 3.058224 GCTGACCGAAACTGTAGCATTTT 60.058 43.478 0.00 0.00 0.00 1.82
120 121 4.556699 GCTGACCGAAACTGTAGCATTTTT 60.557 41.667 0.00 0.00 0.00 1.94
121 122 4.854399 TGACCGAAACTGTAGCATTTTTG 58.146 39.130 0.00 0.00 0.00 2.44
122 123 4.576873 TGACCGAAACTGTAGCATTTTTGA 59.423 37.500 0.00 0.00 0.00 2.69
123 124 5.240623 TGACCGAAACTGTAGCATTTTTGAT 59.759 36.000 0.00 0.00 0.00 2.57
124 125 6.084326 ACCGAAACTGTAGCATTTTTGATT 57.916 33.333 0.00 0.00 0.00 2.57
125 126 5.920273 ACCGAAACTGTAGCATTTTTGATTG 59.080 36.000 0.00 0.00 0.00 2.67
126 127 5.345741 CCGAAACTGTAGCATTTTTGATTGG 59.654 40.000 0.00 0.00 0.00 3.16
127 128 5.920273 CGAAACTGTAGCATTTTTGATTGGT 59.080 36.000 0.00 0.00 0.00 3.67
128 129 6.420604 CGAAACTGTAGCATTTTTGATTGGTT 59.579 34.615 0.00 0.00 0.00 3.67
129 130 7.042791 CGAAACTGTAGCATTTTTGATTGGTTT 60.043 33.333 0.00 0.00 0.00 3.27
130 131 7.481275 AACTGTAGCATTTTTGATTGGTTTG 57.519 32.000 0.00 0.00 0.00 2.93
131 132 5.990996 ACTGTAGCATTTTTGATTGGTTTGG 59.009 36.000 0.00 0.00 0.00 3.28
132 133 4.754114 TGTAGCATTTTTGATTGGTTTGGC 59.246 37.500 0.00 0.00 0.00 4.52
133 134 3.818180 AGCATTTTTGATTGGTTTGGCA 58.182 36.364 0.00 0.00 0.00 4.92
134 135 4.400120 AGCATTTTTGATTGGTTTGGCAT 58.600 34.783 0.00 0.00 0.00 4.40
135 136 4.828387 AGCATTTTTGATTGGTTTGGCATT 59.172 33.333 0.00 0.00 0.00 3.56
136 137 4.918583 GCATTTTTGATTGGTTTGGCATTG 59.081 37.500 0.00 0.00 0.00 2.82
137 138 5.462405 CATTTTTGATTGGTTTGGCATTGG 58.538 37.500 0.00 0.00 0.00 3.16
138 139 3.853355 TTTGATTGGTTTGGCATTGGT 57.147 38.095 0.00 0.00 0.00 3.67
139 140 3.853355 TTGATTGGTTTGGCATTGGTT 57.147 38.095 0.00 0.00 0.00 3.67
140 141 3.123157 TGATTGGTTTGGCATTGGTTG 57.877 42.857 0.00 0.00 0.00 3.77
141 142 2.702478 TGATTGGTTTGGCATTGGTTGA 59.298 40.909 0.00 0.00 0.00 3.18
142 143 3.327172 TGATTGGTTTGGCATTGGTTGAT 59.673 39.130 0.00 0.00 0.00 2.57
143 144 3.853355 TTGGTTTGGCATTGGTTGATT 57.147 38.095 0.00 0.00 0.00 2.57
144 145 3.853355 TGGTTTGGCATTGGTTGATTT 57.147 38.095 0.00 0.00 0.00 2.17
145 146 4.162040 TGGTTTGGCATTGGTTGATTTT 57.838 36.364 0.00 0.00 0.00 1.82
146 147 3.881688 TGGTTTGGCATTGGTTGATTTTG 59.118 39.130 0.00 0.00 0.00 2.44
147 148 3.304592 GGTTTGGCATTGGTTGATTTTGC 60.305 43.478 0.00 0.00 0.00 3.68
148 149 3.488778 TTGGCATTGGTTGATTTTGCT 57.511 38.095 0.00 0.00 33.86 3.91
149 150 3.042871 TGGCATTGGTTGATTTTGCTC 57.957 42.857 0.00 0.00 33.86 4.26
150 151 2.633967 TGGCATTGGTTGATTTTGCTCT 59.366 40.909 0.00 0.00 33.86 4.09
151 152 2.997986 GGCATTGGTTGATTTTGCTCTG 59.002 45.455 0.00 0.00 33.86 3.35
152 153 2.414138 GCATTGGTTGATTTTGCTCTGC 59.586 45.455 0.00 0.00 0.00 4.26
153 154 2.818130 TTGGTTGATTTTGCTCTGCC 57.182 45.000 0.00 0.00 0.00 4.85
154 155 0.597568 TGGTTGATTTTGCTCTGCCG 59.402 50.000 0.00 0.00 0.00 5.69
155 156 0.109132 GGTTGATTTTGCTCTGCCGG 60.109 55.000 0.00 0.00 0.00 6.13
156 157 0.733909 GTTGATTTTGCTCTGCCGGC 60.734 55.000 22.73 22.73 0.00 6.13
157 158 0.895100 TTGATTTTGCTCTGCCGGCT 60.895 50.000 29.70 2.62 0.00 5.52
158 159 1.138247 GATTTTGCTCTGCCGGCTG 59.862 57.895 29.70 27.77 0.00 4.85
159 160 2.879039 GATTTTGCTCTGCCGGCTGC 62.879 60.000 29.70 26.86 41.77 5.25
179 180 2.429571 CCGCGTCGTCGAAGGAAA 60.430 61.111 4.92 0.00 38.15 3.13
180 181 2.434134 CCGCGTCGTCGAAGGAAAG 61.434 63.158 4.92 0.00 38.15 2.62
181 182 1.441515 CGCGTCGTCGAAGGAAAGA 60.442 57.895 6.17 0.00 39.71 2.52
182 183 1.000233 CGCGTCGTCGAAGGAAAGAA 61.000 55.000 6.17 0.00 39.71 2.52
183 184 0.708918 GCGTCGTCGAAGGAAAGAAG 59.291 55.000 6.17 0.00 39.71 2.85
184 185 1.337821 CGTCGTCGAAGGAAAGAAGG 58.662 55.000 0.00 0.00 39.71 3.46
185 186 1.711206 GTCGTCGAAGGAAAGAAGGG 58.289 55.000 0.00 0.00 0.00 3.95
186 187 1.271656 GTCGTCGAAGGAAAGAAGGGA 59.728 52.381 0.00 0.00 0.00 4.20
187 188 1.544691 TCGTCGAAGGAAAGAAGGGAG 59.455 52.381 0.00 0.00 0.00 4.30
188 189 1.544691 CGTCGAAGGAAAGAAGGGAGA 59.455 52.381 0.00 0.00 0.00 3.71
189 190 2.671632 CGTCGAAGGAAAGAAGGGAGAC 60.672 54.545 0.00 0.00 0.00 3.36
190 191 2.299297 GTCGAAGGAAAGAAGGGAGACA 59.701 50.000 0.00 0.00 0.00 3.41
191 192 2.969950 TCGAAGGAAAGAAGGGAGACAA 59.030 45.455 0.00 0.00 0.00 3.18
192 193 3.006967 TCGAAGGAAAGAAGGGAGACAAG 59.993 47.826 0.00 0.00 0.00 3.16
193 194 3.680490 GAAGGAAAGAAGGGAGACAAGG 58.320 50.000 0.00 0.00 0.00 3.61
194 195 1.352687 AGGAAAGAAGGGAGACAAGGC 59.647 52.381 0.00 0.00 0.00 4.35
195 196 1.614583 GGAAAGAAGGGAGACAAGGCC 60.615 57.143 0.00 0.00 0.00 5.19
196 197 1.073923 GAAAGAAGGGAGACAAGGCCA 59.926 52.381 5.01 0.00 0.00 5.36
197 198 1.149101 AAGAAGGGAGACAAGGCCAA 58.851 50.000 5.01 0.00 0.00 4.52
198 199 1.149101 AGAAGGGAGACAAGGCCAAA 58.851 50.000 5.01 0.00 0.00 3.28
199 200 1.499007 AGAAGGGAGACAAGGCCAAAA 59.501 47.619 5.01 0.00 0.00 2.44
200 201 1.613925 GAAGGGAGACAAGGCCAAAAC 59.386 52.381 5.01 0.00 0.00 2.43
201 202 0.555769 AGGGAGACAAGGCCAAAACA 59.444 50.000 5.01 0.00 0.00 2.83
202 203 0.961753 GGGAGACAAGGCCAAAACAG 59.038 55.000 5.01 0.00 0.00 3.16
203 204 0.961753 GGAGACAAGGCCAAAACAGG 59.038 55.000 5.01 0.00 0.00 4.00
204 205 1.478654 GGAGACAAGGCCAAAACAGGA 60.479 52.381 5.01 0.00 0.00 3.86
205 206 1.882623 GAGACAAGGCCAAAACAGGAG 59.117 52.381 5.01 0.00 0.00 3.69
206 207 0.961753 GACAAGGCCAAAACAGGAGG 59.038 55.000 5.01 0.00 0.00 4.30
207 208 0.555769 ACAAGGCCAAAACAGGAGGA 59.444 50.000 5.01 0.00 0.00 3.71
208 209 1.251251 CAAGGCCAAAACAGGAGGAG 58.749 55.000 5.01 0.00 0.00 3.69
209 210 0.540597 AAGGCCAAAACAGGAGGAGC 60.541 55.000 5.01 0.00 0.00 4.70
210 211 1.228552 GGCCAAAACAGGAGGAGCA 60.229 57.895 0.00 0.00 0.00 4.26
211 212 1.246737 GGCCAAAACAGGAGGAGCAG 61.247 60.000 0.00 0.00 0.00 4.24
212 213 0.538287 GCCAAAACAGGAGGAGCAGT 60.538 55.000 0.00 0.00 0.00 4.40
213 214 1.986882 CCAAAACAGGAGGAGCAGTT 58.013 50.000 0.00 0.00 0.00 3.16
214 215 2.814097 GCCAAAACAGGAGGAGCAGTTA 60.814 50.000 0.00 0.00 0.00 2.24
215 216 3.486383 CCAAAACAGGAGGAGCAGTTAA 58.514 45.455 0.00 0.00 0.00 2.01
216 217 3.253432 CCAAAACAGGAGGAGCAGTTAAC 59.747 47.826 0.00 0.00 0.00 2.01
217 218 4.137543 CAAAACAGGAGGAGCAGTTAACT 58.862 43.478 1.12 1.12 0.00 2.24
218 219 5.305585 CAAAACAGGAGGAGCAGTTAACTA 58.694 41.667 8.04 0.00 0.00 2.24
219 220 4.810191 AACAGGAGGAGCAGTTAACTAG 57.190 45.455 8.04 4.36 0.00 2.57
220 221 4.048970 ACAGGAGGAGCAGTTAACTAGA 57.951 45.455 8.04 0.00 0.00 2.43
221 222 3.764972 ACAGGAGGAGCAGTTAACTAGAC 59.235 47.826 8.04 1.06 0.00 2.59
222 223 3.131400 CAGGAGGAGCAGTTAACTAGACC 59.869 52.174 8.04 11.22 0.00 3.85
223 224 2.431419 GGAGGAGCAGTTAACTAGACCC 59.569 54.545 8.04 7.49 0.00 4.46
224 225 3.097614 GAGGAGCAGTTAACTAGACCCA 58.902 50.000 8.04 0.00 0.00 4.51
225 226 2.832733 AGGAGCAGTTAACTAGACCCAC 59.167 50.000 8.04 0.00 0.00 4.61
226 227 2.093606 GGAGCAGTTAACTAGACCCACC 60.094 54.545 8.04 2.18 0.00 4.61
227 228 1.907255 AGCAGTTAACTAGACCCACCC 59.093 52.381 8.04 0.00 0.00 4.61
228 229 1.065636 GCAGTTAACTAGACCCACCCC 60.066 57.143 8.04 0.00 0.00 4.95
229 230 2.262637 CAGTTAACTAGACCCACCCCA 58.737 52.381 8.04 0.00 0.00 4.96
230 231 2.844348 CAGTTAACTAGACCCACCCCAT 59.156 50.000 8.04 0.00 0.00 4.00
231 232 3.113043 AGTTAACTAGACCCACCCCATC 58.887 50.000 6.26 0.00 0.00 3.51
232 233 2.841881 GTTAACTAGACCCACCCCATCA 59.158 50.000 0.00 0.00 0.00 3.07
233 234 2.053747 AACTAGACCCACCCCATCAA 57.946 50.000 0.00 0.00 0.00 2.57
234 235 1.584724 ACTAGACCCACCCCATCAAG 58.415 55.000 0.00 0.00 0.00 3.02
235 236 0.181350 CTAGACCCACCCCATCAAGC 59.819 60.000 0.00 0.00 0.00 4.01
236 237 0.548926 TAGACCCACCCCATCAAGCA 60.549 55.000 0.00 0.00 0.00 3.91
237 238 1.379044 GACCCACCCCATCAAGCAG 60.379 63.158 0.00 0.00 0.00 4.24
238 239 1.852157 ACCCACCCCATCAAGCAGA 60.852 57.895 0.00 0.00 0.00 4.26
239 240 1.379044 CCCACCCCATCAAGCAGAC 60.379 63.158 0.00 0.00 0.00 3.51
240 241 1.746615 CCACCCCATCAAGCAGACG 60.747 63.158 0.00 0.00 0.00 4.18
241 242 1.003355 CACCCCATCAAGCAGACGT 60.003 57.895 0.00 0.00 0.00 4.34
242 243 1.003355 ACCCCATCAAGCAGACGTG 60.003 57.895 0.00 0.00 0.00 4.49
243 244 1.746615 CCCCATCAAGCAGACGTGG 60.747 63.158 0.00 0.00 0.00 4.94
244 245 2.401766 CCCATCAAGCAGACGTGGC 61.402 63.158 0.00 0.00 0.00 5.01
245 246 1.672030 CCATCAAGCAGACGTGGCA 60.672 57.895 10.99 0.00 0.00 4.92
246 247 1.642037 CCATCAAGCAGACGTGGCAG 61.642 60.000 10.99 3.83 0.00 4.85
247 248 0.952497 CATCAAGCAGACGTGGCAGT 60.952 55.000 10.99 0.00 0.00 4.40
248 249 0.671781 ATCAAGCAGACGTGGCAGTC 60.672 55.000 10.99 8.46 41.23 3.51
249 250 2.356313 AAGCAGACGTGGCAGTCG 60.356 61.111 10.99 4.06 45.26 4.18
250 251 3.151958 AAGCAGACGTGGCAGTCGT 62.152 57.895 10.99 2.55 45.26 4.34
255 256 2.279918 ACGTGGCAGTCGTCCAAC 60.280 61.111 0.00 0.00 36.85 3.77
256 257 3.403057 CGTGGCAGTCGTCCAACG 61.403 66.667 0.00 0.00 44.19 4.10
257 258 3.712881 GTGGCAGTCGTCCAACGC 61.713 66.667 0.00 0.00 42.21 4.84
258 259 4.980805 TGGCAGTCGTCCAACGCC 62.981 66.667 0.00 0.00 42.21 5.68
269 270 4.277593 CAACGCCCCGCAAGCAAA 62.278 61.111 0.00 0.00 0.00 3.68
270 271 3.532155 AACGCCCCGCAAGCAAAA 61.532 55.556 0.00 0.00 0.00 2.44
271 272 3.783478 AACGCCCCGCAAGCAAAAC 62.783 57.895 0.00 0.00 0.00 2.43
273 274 3.922640 GCCCCGCAAGCAAAACCA 61.923 61.111 0.00 0.00 0.00 3.67
274 275 2.028925 CCCCGCAAGCAAAACCAC 59.971 61.111 0.00 0.00 0.00 4.16
275 276 2.028925 CCCGCAAGCAAAACCACC 59.971 61.111 0.00 0.00 0.00 4.61
276 277 2.498056 CCCGCAAGCAAAACCACCT 61.498 57.895 0.00 0.00 0.00 4.00
277 278 1.300080 CCGCAAGCAAAACCACCTG 60.300 57.895 0.00 0.00 0.00 4.00
278 279 1.437160 CGCAAGCAAAACCACCTGT 59.563 52.632 0.00 0.00 0.00 4.00
279 280 0.665835 CGCAAGCAAAACCACCTGTA 59.334 50.000 0.00 0.00 0.00 2.74
280 281 1.334960 CGCAAGCAAAACCACCTGTAG 60.335 52.381 0.00 0.00 0.00 2.74
281 282 1.953686 GCAAGCAAAACCACCTGTAGA 59.046 47.619 0.00 0.00 0.00 2.59
282 283 2.360801 GCAAGCAAAACCACCTGTAGAA 59.639 45.455 0.00 0.00 0.00 2.10
283 284 3.181480 GCAAGCAAAACCACCTGTAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
284 285 4.359706 CAAGCAAAACCACCTGTAGAAAC 58.640 43.478 0.00 0.00 0.00 2.78
285 286 2.956333 AGCAAAACCACCTGTAGAAACC 59.044 45.455 0.00 0.00 0.00 3.27
286 287 2.691011 GCAAAACCACCTGTAGAAACCA 59.309 45.455 0.00 0.00 0.00 3.67
287 288 3.490249 GCAAAACCACCTGTAGAAACCAC 60.490 47.826 0.00 0.00 0.00 4.16
288 289 3.945640 AAACCACCTGTAGAAACCACT 57.054 42.857 0.00 0.00 0.00 4.00
289 290 5.127491 CAAAACCACCTGTAGAAACCACTA 58.873 41.667 0.00 0.00 0.00 2.74
290 291 5.578157 AAACCACCTGTAGAAACCACTAT 57.422 39.130 0.00 0.00 0.00 2.12
291 292 6.691255 AAACCACCTGTAGAAACCACTATA 57.309 37.500 0.00 0.00 0.00 1.31
292 293 6.691255 AACCACCTGTAGAAACCACTATAA 57.309 37.500 0.00 0.00 0.00 0.98
293 294 6.886178 ACCACCTGTAGAAACCACTATAAT 57.114 37.500 0.00 0.00 0.00 1.28
294 295 6.885922 ACCACCTGTAGAAACCACTATAATC 58.114 40.000 0.00 0.00 0.00 1.75
295 296 6.442564 ACCACCTGTAGAAACCACTATAATCA 59.557 38.462 0.00 0.00 0.00 2.57
296 297 6.986817 CCACCTGTAGAAACCACTATAATCAG 59.013 42.308 0.00 0.00 0.00 2.90
297 298 6.480320 CACCTGTAGAAACCACTATAATCAGC 59.520 42.308 0.00 0.00 0.00 4.26
298 299 6.156256 ACCTGTAGAAACCACTATAATCAGCA 59.844 38.462 0.00 0.00 0.00 4.41
299 300 6.480320 CCTGTAGAAACCACTATAATCAGCAC 59.520 42.308 0.00 0.00 0.00 4.40
300 301 6.941857 TGTAGAAACCACTATAATCAGCACA 58.058 36.000 0.00 0.00 0.00 4.57
301 302 7.390823 TGTAGAAACCACTATAATCAGCACAA 58.609 34.615 0.00 0.00 0.00 3.33
302 303 6.992063 AGAAACCACTATAATCAGCACAAG 57.008 37.500 0.00 0.00 0.00 3.16
303 304 5.882557 AGAAACCACTATAATCAGCACAAGG 59.117 40.000 0.00 0.00 0.00 3.61
304 305 4.156455 ACCACTATAATCAGCACAAGGG 57.844 45.455 0.00 0.00 0.00 3.95
305 306 3.117888 ACCACTATAATCAGCACAAGGGG 60.118 47.826 0.00 0.00 33.59 4.79
306 307 3.480470 CACTATAATCAGCACAAGGGGG 58.520 50.000 0.00 0.00 0.00 5.40
307 308 3.117888 CACTATAATCAGCACAAGGGGGT 60.118 47.826 0.00 0.00 0.00 4.95
308 309 2.442236 ATAATCAGCACAAGGGGGTG 57.558 50.000 0.00 0.00 41.72 4.61
309 310 1.367346 TAATCAGCACAAGGGGGTGA 58.633 50.000 2.58 2.58 45.60 4.02
310 311 2.402238 ATCAGCACAAGGGGGTGAT 58.598 52.632 7.31 7.31 45.36 3.06
311 312 2.163454 TCAGCACAAGGGGGTGATT 58.837 52.632 0.00 0.00 41.32 2.57
312 313 0.482446 TCAGCACAAGGGGGTGATTT 59.518 50.000 0.00 0.00 41.32 2.17
313 314 0.604578 CAGCACAAGGGGGTGATTTG 59.395 55.000 0.00 0.00 41.32 2.32
314 315 0.482446 AGCACAAGGGGGTGATTTGA 59.518 50.000 0.00 0.00 41.32 2.69
315 316 0.603065 GCACAAGGGGGTGATTTGAC 59.397 55.000 0.00 0.00 41.32 3.18
316 317 1.823250 GCACAAGGGGGTGATTTGACT 60.823 52.381 0.00 0.00 41.32 3.41
317 318 1.888512 CACAAGGGGGTGATTTGACTG 59.111 52.381 0.00 0.00 41.32 3.51
318 319 1.203050 ACAAGGGGGTGATTTGACTGG 60.203 52.381 0.00 0.00 0.00 4.00
319 320 1.158007 AAGGGGGTGATTTGACTGGT 58.842 50.000 0.00 0.00 0.00 4.00
320 321 2.041081 CAAGGGGGTGATTTGACTGGTA 59.959 50.000 0.00 0.00 0.00 3.25
321 322 2.573463 AGGGGGTGATTTGACTGGTAT 58.427 47.619 0.00 0.00 0.00 2.73
322 323 2.926329 AGGGGGTGATTTGACTGGTATT 59.074 45.455 0.00 0.00 0.00 1.89
323 324 4.116113 AGGGGGTGATTTGACTGGTATTA 58.884 43.478 0.00 0.00 0.00 0.98
324 325 4.166144 AGGGGGTGATTTGACTGGTATTAG 59.834 45.833 0.00 0.00 0.00 1.73
325 326 4.165372 GGGGGTGATTTGACTGGTATTAGA 59.835 45.833 0.00 0.00 0.00 2.10
326 327 5.368989 GGGGTGATTTGACTGGTATTAGAG 58.631 45.833 0.00 0.00 0.00 2.43
327 328 5.130477 GGGGTGATTTGACTGGTATTAGAGA 59.870 44.000 0.00 0.00 0.00 3.10
328 329 6.049790 GGGTGATTTGACTGGTATTAGAGAC 58.950 44.000 0.00 0.00 0.00 3.36
329 330 6.049790 GGTGATTTGACTGGTATTAGAGACC 58.950 44.000 0.00 0.00 37.49 3.85
330 331 6.127026 GGTGATTTGACTGGTATTAGAGACCT 60.127 42.308 0.00 0.00 37.88 3.85
331 332 6.981559 GTGATTTGACTGGTATTAGAGACCTC 59.018 42.308 0.00 0.00 37.88 3.85
332 333 6.667848 TGATTTGACTGGTATTAGAGACCTCA 59.332 38.462 0.00 0.00 37.88 3.86
333 334 6.531503 TTTGACTGGTATTAGAGACCTCAG 57.468 41.667 0.00 0.00 37.88 3.35
334 335 4.537751 TGACTGGTATTAGAGACCTCAGG 58.462 47.826 0.00 0.00 37.88 3.86
335 336 3.892588 GACTGGTATTAGAGACCTCAGGG 59.107 52.174 0.00 0.00 37.88 4.45
336 337 3.235200 CTGGTATTAGAGACCTCAGGGG 58.765 54.545 0.00 0.00 37.88 4.79
337 338 2.090719 TGGTATTAGAGACCTCAGGGGG 60.091 54.545 0.00 0.00 40.03 5.40
338 339 2.090663 GGTATTAGAGACCTCAGGGGGT 60.091 54.545 0.00 0.00 43.07 4.95
339 340 2.972153 ATTAGAGACCTCAGGGGGTT 57.028 50.000 0.00 0.00 40.06 4.11
340 341 1.952621 TTAGAGACCTCAGGGGGTTG 58.047 55.000 0.00 0.00 40.06 3.77
341 342 0.617820 TAGAGACCTCAGGGGGTTGC 60.618 60.000 0.00 0.00 40.06 4.17
342 343 1.920835 GAGACCTCAGGGGGTTGCT 60.921 63.158 0.00 0.00 40.06 3.91
343 344 1.464198 AGACCTCAGGGGGTTGCTT 60.464 57.895 0.00 0.00 40.06 3.91
344 345 0.178873 AGACCTCAGGGGGTTGCTTA 60.179 55.000 0.00 0.00 40.06 3.09
345 346 0.696501 GACCTCAGGGGGTTGCTTAA 59.303 55.000 0.00 0.00 40.06 1.85
346 347 0.404426 ACCTCAGGGGGTTGCTTAAC 59.596 55.000 0.00 0.00 40.03 2.01
347 348 0.698818 CCTCAGGGGGTTGCTTAACT 59.301 55.000 0.00 0.00 0.00 2.24
348 349 1.614317 CCTCAGGGGGTTGCTTAACTG 60.614 57.143 0.00 0.00 0.00 3.16
349 350 0.404040 TCAGGGGGTTGCTTAACTGG 59.596 55.000 0.00 0.00 0.00 4.00
350 351 0.112412 CAGGGGGTTGCTTAACTGGT 59.888 55.000 0.00 0.00 0.00 4.00
351 352 0.857675 AGGGGGTTGCTTAACTGGTT 59.142 50.000 0.00 0.00 0.00 3.67
352 353 1.219469 AGGGGGTTGCTTAACTGGTTT 59.781 47.619 0.00 0.00 0.00 3.27
353 354 2.043992 GGGGGTTGCTTAACTGGTTTT 58.956 47.619 0.00 0.00 0.00 2.43
354 355 3.117054 AGGGGGTTGCTTAACTGGTTTTA 60.117 43.478 0.00 0.00 0.00 1.52
355 356 3.257375 GGGGGTTGCTTAACTGGTTTTAG 59.743 47.826 0.00 0.00 0.00 1.85
356 357 3.257375 GGGGTTGCTTAACTGGTTTTAGG 59.743 47.826 0.00 0.00 0.00 2.69
357 358 3.893200 GGGTTGCTTAACTGGTTTTAGGT 59.107 43.478 0.00 0.00 0.00 3.08
358 359 4.022589 GGGTTGCTTAACTGGTTTTAGGTC 60.023 45.833 0.00 0.00 0.00 3.85
359 360 4.825634 GGTTGCTTAACTGGTTTTAGGTCT 59.174 41.667 0.00 0.00 0.00 3.85
360 361 5.301045 GGTTGCTTAACTGGTTTTAGGTCTT 59.699 40.000 0.00 0.00 0.00 3.01
361 362 6.487668 GGTTGCTTAACTGGTTTTAGGTCTTA 59.512 38.462 0.00 0.00 0.00 2.10
362 363 7.013559 GGTTGCTTAACTGGTTTTAGGTCTTAA 59.986 37.037 0.00 0.00 0.00 1.85
363 364 7.739498 TGCTTAACTGGTTTTAGGTCTTAAG 57.261 36.000 0.00 0.00 0.00 1.85
364 365 6.713450 TGCTTAACTGGTTTTAGGTCTTAAGG 59.287 38.462 1.85 0.00 0.00 2.69
365 366 6.150641 GCTTAACTGGTTTTAGGTCTTAAGGG 59.849 42.308 1.85 0.00 0.00 3.95
366 367 4.652679 ACTGGTTTTAGGTCTTAAGGGG 57.347 45.455 1.85 0.00 0.00 4.79
367 368 3.985452 ACTGGTTTTAGGTCTTAAGGGGT 59.015 43.478 1.85 0.00 0.00 4.95
368 369 4.202535 ACTGGTTTTAGGTCTTAAGGGGTG 60.203 45.833 1.85 0.00 0.00 4.61
369 370 3.982052 TGGTTTTAGGTCTTAAGGGGTGA 59.018 43.478 1.85 0.00 0.00 4.02
370 371 4.416179 TGGTTTTAGGTCTTAAGGGGTGAA 59.584 41.667 1.85 0.00 0.00 3.18
371 372 5.075344 TGGTTTTAGGTCTTAAGGGGTGAAT 59.925 40.000 1.85 0.00 0.00 2.57
372 373 6.014647 GGTTTTAGGTCTTAAGGGGTGAATT 58.985 40.000 1.85 0.00 0.00 2.17
373 374 7.177184 GGTTTTAGGTCTTAAGGGGTGAATTA 58.823 38.462 1.85 0.00 0.00 1.40
374 375 7.338703 GGTTTTAGGTCTTAAGGGGTGAATTAG 59.661 40.741 1.85 0.00 0.00 1.73
375 376 7.578458 TTTAGGTCTTAAGGGGTGAATTAGT 57.422 36.000 1.85 0.00 0.00 2.24
376 377 5.695424 AGGTCTTAAGGGGTGAATTAGTC 57.305 43.478 1.85 0.00 0.00 2.59
377 378 4.161754 AGGTCTTAAGGGGTGAATTAGTCG 59.838 45.833 1.85 0.00 0.00 4.18
378 379 4.439968 GTCTTAAGGGGTGAATTAGTCGG 58.560 47.826 1.85 0.00 0.00 4.79
379 380 4.081254 GTCTTAAGGGGTGAATTAGTCGGT 60.081 45.833 1.85 0.00 0.00 4.69
380 381 4.533311 TCTTAAGGGGTGAATTAGTCGGTT 59.467 41.667 1.85 0.00 0.00 4.44
381 382 3.801307 AAGGGGTGAATTAGTCGGTTT 57.199 42.857 0.00 0.00 0.00 3.27
382 383 3.067684 AGGGGTGAATTAGTCGGTTTG 57.932 47.619 0.00 0.00 0.00 2.93
383 384 2.374170 AGGGGTGAATTAGTCGGTTTGT 59.626 45.455 0.00 0.00 0.00 2.83
384 385 2.486592 GGGGTGAATTAGTCGGTTTGTG 59.513 50.000 0.00 0.00 0.00 3.33
385 386 3.404899 GGGTGAATTAGTCGGTTTGTGA 58.595 45.455 0.00 0.00 0.00 3.58
386 387 3.816523 GGGTGAATTAGTCGGTTTGTGAA 59.183 43.478 0.00 0.00 0.00 3.18
387 388 4.276431 GGGTGAATTAGTCGGTTTGTGAAA 59.724 41.667 0.00 0.00 0.00 2.69
388 389 5.209977 GGTGAATTAGTCGGTTTGTGAAAC 58.790 41.667 0.00 0.00 40.65 2.78
395 396 3.450507 GTTTGTGAAACCCCGGGG 58.549 61.111 39.18 39.18 42.03 5.73
406 407 2.122413 CCCGGGGGATGATCTGGA 60.122 66.667 14.71 0.00 37.50 3.86
407 408 1.539869 CCCGGGGGATGATCTGGAT 60.540 63.158 14.71 0.00 37.50 3.41
408 409 1.136329 CCCGGGGGATGATCTGGATT 61.136 60.000 14.71 0.00 37.50 3.01
409 410 0.773644 CCGGGGGATGATCTGGATTT 59.226 55.000 0.00 0.00 0.00 2.17
410 411 1.271597 CCGGGGGATGATCTGGATTTC 60.272 57.143 0.00 0.00 0.00 2.17
411 412 1.701847 CGGGGGATGATCTGGATTTCT 59.298 52.381 0.00 0.00 0.00 2.52
412 413 2.107204 CGGGGGATGATCTGGATTTCTT 59.893 50.000 0.00 0.00 0.00 2.52
413 414 3.435601 CGGGGGATGATCTGGATTTCTTT 60.436 47.826 0.00 0.00 0.00 2.52
414 415 4.202461 CGGGGGATGATCTGGATTTCTTTA 60.202 45.833 0.00 0.00 0.00 1.85
415 416 5.320277 GGGGGATGATCTGGATTTCTTTAG 58.680 45.833 0.00 0.00 0.00 1.85
416 417 5.073691 GGGGGATGATCTGGATTTCTTTAGA 59.926 44.000 0.00 0.00 0.00 2.10
417 418 6.410853 GGGGGATGATCTGGATTTCTTTAGAA 60.411 42.308 0.00 0.00 0.00 2.10
418 419 7.062957 GGGGATGATCTGGATTTCTTTAGAAA 58.937 38.462 7.33 7.33 46.60 2.52
419 420 7.561356 GGGGATGATCTGGATTTCTTTAGAAAA 59.439 37.037 8.82 0.00 45.81 2.29
420 421 8.971073 GGGATGATCTGGATTTCTTTAGAAAAA 58.029 33.333 8.82 0.00 45.81 1.94
444 445 7.639113 AAAAACATCCAAAGTAGTCTTCACA 57.361 32.000 0.00 0.00 32.90 3.58
445 446 6.619801 AAACATCCAAAGTAGTCTTCACAC 57.380 37.500 0.00 0.00 32.90 3.82
446 447 5.552870 ACATCCAAAGTAGTCTTCACACT 57.447 39.130 0.00 0.00 32.90 3.55
447 448 5.930135 ACATCCAAAGTAGTCTTCACACTT 58.070 37.500 0.00 0.00 34.03 3.16
448 449 6.357367 ACATCCAAAGTAGTCTTCACACTTT 58.643 36.000 0.00 0.00 41.86 2.66
449 450 6.483640 ACATCCAAAGTAGTCTTCACACTTTC 59.516 38.462 0.00 0.00 39.78 2.62
450 451 5.984725 TCCAAAGTAGTCTTCACACTTTCA 58.015 37.500 0.00 0.00 39.78 2.69
451 452 5.815740 TCCAAAGTAGTCTTCACACTTTCAC 59.184 40.000 0.00 0.00 39.78 3.18
452 453 5.007724 CCAAAGTAGTCTTCACACTTTCACC 59.992 44.000 0.00 0.00 39.78 4.02
453 454 5.353394 AAGTAGTCTTCACACTTTCACCA 57.647 39.130 0.00 0.00 0.00 4.17
454 455 5.552870 AGTAGTCTTCACACTTTCACCAT 57.447 39.130 0.00 0.00 0.00 3.55
455 456 5.930135 AGTAGTCTTCACACTTTCACCATT 58.070 37.500 0.00 0.00 0.00 3.16
456 457 5.760253 AGTAGTCTTCACACTTTCACCATTG 59.240 40.000 0.00 0.00 0.00 2.82
457 458 3.316308 AGTCTTCACACTTTCACCATTGC 59.684 43.478 0.00 0.00 0.00 3.56
458 459 3.066621 GTCTTCACACTTTCACCATTGCA 59.933 43.478 0.00 0.00 0.00 4.08
459 460 3.698539 TCTTCACACTTTCACCATTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
460 461 4.159321 TCTTCACACTTTCACCATTGCAAA 59.841 37.500 1.71 0.00 0.00 3.68
461 462 3.779759 TCACACTTTCACCATTGCAAAC 58.220 40.909 1.71 0.00 0.00 2.93
462 463 3.194329 TCACACTTTCACCATTGCAAACA 59.806 39.130 1.71 0.00 0.00 2.83
463 464 3.931468 CACACTTTCACCATTGCAAACAA 59.069 39.130 1.71 0.00 40.87 2.83
465 466 5.752472 CACACTTTCACCATTGCAAACAATA 59.248 36.000 1.71 0.00 44.83 1.90
466 467 5.752955 ACACTTTCACCATTGCAAACAATAC 59.247 36.000 1.71 0.00 44.83 1.89
467 468 5.984926 CACTTTCACCATTGCAAACAATACT 59.015 36.000 1.71 0.00 44.83 2.12
468 469 6.479660 CACTTTCACCATTGCAAACAATACTT 59.520 34.615 1.71 0.00 44.83 2.24
469 470 7.011295 CACTTTCACCATTGCAAACAATACTTT 59.989 33.333 1.71 0.00 44.83 2.66
470 471 7.224557 ACTTTCACCATTGCAAACAATACTTTC 59.775 33.333 1.71 0.00 44.83 2.62
471 472 6.154203 TCACCATTGCAAACAATACTTTCA 57.846 33.333 1.71 0.00 44.83 2.69
472 473 6.757237 TCACCATTGCAAACAATACTTTCAT 58.243 32.000 1.71 0.00 44.83 2.57
473 474 6.867816 TCACCATTGCAAACAATACTTTCATC 59.132 34.615 1.71 0.00 44.83 2.92
474 475 6.645827 CACCATTGCAAACAATACTTTCATCA 59.354 34.615 1.71 0.00 44.83 3.07
475 476 7.171167 CACCATTGCAAACAATACTTTCATCAA 59.829 33.333 1.71 0.00 44.83 2.57
476 477 7.714377 ACCATTGCAAACAATACTTTCATCAAA 59.286 29.630 1.71 0.00 44.83 2.69
477 478 8.723311 CCATTGCAAACAATACTTTCATCAAAT 58.277 29.630 1.71 0.00 44.83 2.32
478 479 9.536558 CATTGCAAACAATACTTTCATCAAATG 57.463 29.630 1.71 0.00 44.83 2.32
479 480 8.883954 TTGCAAACAATACTTTCATCAAATGA 57.116 26.923 0.00 0.00 37.55 2.57
480 481 8.883954 TGCAAACAATACTTTCATCAAATGAA 57.116 26.923 0.00 0.00 46.77 2.57
494 495 8.606040 TCATCAAATGAAAAGAAAATGTTCCC 57.394 30.769 0.00 0.00 36.11 3.97
495 496 8.431222 TCATCAAATGAAAAGAAAATGTTCCCT 58.569 29.630 0.00 0.00 36.11 4.20
496 497 9.709495 CATCAAATGAAAAGAAAATGTTCCCTA 57.291 29.630 0.00 0.00 33.92 3.53
541 542 9.598517 TTTGAGACAAATGAAATACTTTTTGCT 57.401 25.926 0.00 0.00 0.00 3.91
542 543 9.598517 TTGAGACAAATGAAATACTTTTTGCTT 57.401 25.926 0.00 0.00 0.00 3.91
543 544 9.598517 TGAGACAAATGAAATACTTTTTGCTTT 57.401 25.926 0.00 0.00 0.00 3.51
549 550 9.786105 AAATGAAATACTTTTTGCTTTTTGTGG 57.214 25.926 0.00 0.00 0.00 4.17
550 551 8.729805 ATGAAATACTTTTTGCTTTTTGTGGA 57.270 26.923 0.00 0.00 0.00 4.02
551 552 8.553459 TGAAATACTTTTTGCTTTTTGTGGAA 57.447 26.923 0.00 0.00 0.00 3.53
927 936 4.425487 ATCGTCGTCTACGGTTCCTTCTT 61.425 47.826 2.24 0.00 44.33 2.52
930 939 1.336517 CGTCTACGGTTCCTTCTTGCA 60.337 52.381 0.00 0.00 35.37 4.08
945 954 3.411446 TCTTGCATACACCAAACCAGAG 58.589 45.455 0.00 0.00 0.00 3.35
952 961 1.974236 ACACCAAACCAGAGAGAGAGG 59.026 52.381 0.00 0.00 0.00 3.69
953 962 1.974236 CACCAAACCAGAGAGAGAGGT 59.026 52.381 0.00 0.00 37.20 3.85
999 1022 0.252103 TCTGGGCTACGAAGAGGGTT 60.252 55.000 0.00 0.00 0.00 4.11
1316 1355 4.081254 TGAGAGTGAGTAGCGTAACCTCTA 60.081 45.833 0.00 0.00 0.00 2.43
1324 1363 2.946785 AGCGTAACCTCTATGCCTACT 58.053 47.619 0.00 0.00 0.00 2.57
1680 1719 6.587608 AGTTCTTTTCAGTCAAAGTTGCAAAG 59.412 34.615 0.00 0.00 35.56 2.77
1707 1746 2.152016 GAGAGTTTAAAGTGGCCGCTT 58.848 47.619 26.01 26.01 0.00 4.68
1814 1853 0.108615 ATCAGCCAAGAGGTTCGTCG 60.109 55.000 0.00 0.00 37.19 5.12
1831 1870 3.003378 TCGTCGCTATTGGTATCTGTCTG 59.997 47.826 0.00 0.00 0.00 3.51
1852 1905 9.466497 TGTCTGAAAATCATTATTCTTTAGGCT 57.534 29.630 0.00 0.00 0.00 4.58
1888 1947 5.986135 AGAATGTAACACATCGATCCTTAGC 59.014 40.000 0.00 0.00 37.97 3.09
1890 1949 5.079689 TGTAACACATCGATCCTTAGCAA 57.920 39.130 0.00 0.00 0.00 3.91
1891 1950 5.670485 TGTAACACATCGATCCTTAGCAAT 58.330 37.500 0.00 0.00 0.00 3.56
1892 1951 6.811954 TGTAACACATCGATCCTTAGCAATA 58.188 36.000 0.00 0.00 0.00 1.90
1893 1952 7.441836 TGTAACACATCGATCCTTAGCAATAT 58.558 34.615 0.00 0.00 0.00 1.28
2060 2147 6.038356 CCAAATGTTTATGGCATCTCTTCAC 58.962 40.000 1.65 0.00 0.00 3.18
2345 2457 3.056328 GGAGCGTTTGGGAGGTGC 61.056 66.667 0.00 0.00 0.00 5.01
2451 2563 5.048224 CCTCAAGTTTTGATTGTGATCAGCT 60.048 40.000 0.00 0.00 42.90 4.24
2478 2591 6.339587 TGTTGTCCTTTTTAGGGCTTTATG 57.660 37.500 0.00 0.00 34.00 1.90
2787 2935 0.846693 AACTTGTGCTCCCAACTCCT 59.153 50.000 0.00 0.00 0.00 3.69
2834 2982 1.699634 TCCCTCAGTTCTGTTTGGGAG 59.300 52.381 18.42 0.00 38.67 4.30
3242 6548 3.181445 ACTGGCCAAACTGTGATTGTAGA 60.181 43.478 7.01 0.00 0.00 2.59
3262 6568 8.079211 TGTAGACTCTTGCCTCTTACATATTT 57.921 34.615 0.00 0.00 0.00 1.40
3578 6892 4.547532 GCCTAGTTATGACATACAGGACG 58.452 47.826 16.16 0.00 0.00 4.79
4122 7436 5.345741 CGCATTTTAAGTGCTATTTTGTGCT 59.654 36.000 10.51 0.00 40.37 4.40
4276 7593 4.331108 TGCCACATTTACTGCTACAATCA 58.669 39.130 0.00 0.00 0.00 2.57
4623 8180 1.080839 CCCGGACAACAAATTGCCG 60.081 57.895 0.73 12.78 46.33 5.69
4651 8222 4.877823 CCAGACTGTGCATAGCTATCAAAA 59.122 41.667 10.79 0.00 0.00 2.44
4731 8317 1.079503 GATGACTTCAGGTTCACCGC 58.920 55.000 0.00 0.00 42.08 5.68
4873 8509 7.548196 AAACAAGTCTGAATACGAGTTCAAA 57.452 32.000 8.19 0.00 37.63 2.69
4882 8518 6.827641 TGAATACGAGTTCAAACATAACTGC 58.172 36.000 5.08 0.00 37.31 4.40
4883 8519 5.796350 ATACGAGTTCAAACATAACTGCC 57.204 39.130 0.00 0.00 37.31 4.85
4887 8523 4.911610 CGAGTTCAAACATAACTGCCAAAG 59.088 41.667 0.00 0.00 37.31 2.77
4900 8542 4.389576 CAAAGAGCCGGCGTGCAC 62.390 66.667 23.20 6.82 0.00 4.57
4901 8543 4.927782 AAAGAGCCGGCGTGCACA 62.928 61.111 23.20 0.00 0.00 4.57
4902 8544 4.704833 AAGAGCCGGCGTGCACAT 62.705 61.111 23.20 0.00 0.00 3.21
4916 8576 4.273480 GCGTGCACATCCAAGTCTTAATAT 59.727 41.667 18.64 0.00 0.00 1.28
5003 8663 3.144506 AGCTGTCAGTCAAATTGTCCTG 58.855 45.455 0.93 8.40 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.394877 CCAAATACTGCTAATTTGATACGTCAA 58.605 33.333 15.86 0.00 43.79 3.18
14 15 7.011950 CCCAAATACTGCTAATTTGATACGTCA 59.988 37.037 15.86 0.00 43.79 4.35
15 16 7.225931 TCCCAAATACTGCTAATTTGATACGTC 59.774 37.037 15.86 0.00 43.79 4.34
16 17 7.051623 TCCCAAATACTGCTAATTTGATACGT 58.948 34.615 15.86 0.00 43.79 3.57
17 18 7.490962 TCCCAAATACTGCTAATTTGATACG 57.509 36.000 15.86 0.00 43.79 3.06
18 19 8.850156 ACATCCCAAATACTGCTAATTTGATAC 58.150 33.333 15.86 0.00 43.79 2.24
19 20 8.995027 ACATCCCAAATACTGCTAATTTGATA 57.005 30.769 15.86 7.56 43.79 2.15
20 21 7.902920 ACATCCCAAATACTGCTAATTTGAT 57.097 32.000 15.86 4.85 43.79 2.57
21 22 8.849168 CATACATCCCAAATACTGCTAATTTGA 58.151 33.333 15.86 3.22 43.79 2.69
22 23 8.849168 TCATACATCCCAAATACTGCTAATTTG 58.151 33.333 10.27 10.27 41.77 2.32
23 24 8.995027 TCATACATCCCAAATACTGCTAATTT 57.005 30.769 0.00 0.00 0.00 1.82
24 25 9.017509 CATCATACATCCCAAATACTGCTAATT 57.982 33.333 0.00 0.00 0.00 1.40
25 26 8.166061 ACATCATACATCCCAAATACTGCTAAT 58.834 33.333 0.00 0.00 0.00 1.73
26 27 7.517320 ACATCATACATCCCAAATACTGCTAA 58.483 34.615 0.00 0.00 0.00 3.09
27 28 7.078249 ACATCATACATCCCAAATACTGCTA 57.922 36.000 0.00 0.00 0.00 3.49
28 29 5.945310 ACATCATACATCCCAAATACTGCT 58.055 37.500 0.00 0.00 0.00 4.24
29 30 6.441274 CAACATCATACATCCCAAATACTGC 58.559 40.000 0.00 0.00 0.00 4.40
30 31 6.263842 AGCAACATCATACATCCCAAATACTG 59.736 38.462 0.00 0.00 0.00 2.74
31 32 6.367983 AGCAACATCATACATCCCAAATACT 58.632 36.000 0.00 0.00 0.00 2.12
32 33 6.262944 TGAGCAACATCATACATCCCAAATAC 59.737 38.462 0.00 0.00 0.00 1.89
33 34 6.363882 TGAGCAACATCATACATCCCAAATA 58.636 36.000 0.00 0.00 0.00 1.40
34 35 5.202765 TGAGCAACATCATACATCCCAAAT 58.797 37.500 0.00 0.00 0.00 2.32
35 36 4.598022 TGAGCAACATCATACATCCCAAA 58.402 39.130 0.00 0.00 0.00 3.28
36 37 4.233632 TGAGCAACATCATACATCCCAA 57.766 40.909 0.00 0.00 0.00 4.12
37 38 3.929955 TGAGCAACATCATACATCCCA 57.070 42.857 0.00 0.00 0.00 4.37
38 39 5.779529 AAATGAGCAACATCATACATCCC 57.220 39.130 0.00 0.00 39.00 3.85
39 40 7.035840 AGAAAATGAGCAACATCATACATCC 57.964 36.000 0.00 0.00 39.00 3.51
40 41 9.608617 CATAGAAAATGAGCAACATCATACATC 57.391 33.333 0.00 0.00 39.00 3.06
41 42 9.128404 ACATAGAAAATGAGCAACATCATACAT 57.872 29.630 0.00 0.00 39.00 2.29
42 43 8.400186 CACATAGAAAATGAGCAACATCATACA 58.600 33.333 0.00 0.00 39.00 2.29
43 44 8.615211 TCACATAGAAAATGAGCAACATCATAC 58.385 33.333 0.00 0.00 39.00 2.39
44 45 8.735692 TCACATAGAAAATGAGCAACATCATA 57.264 30.769 0.00 0.00 39.00 2.15
45 46 7.634671 TCACATAGAAAATGAGCAACATCAT 57.365 32.000 0.00 0.00 41.72 2.45
46 47 7.451501 TTCACATAGAAAATGAGCAACATCA 57.548 32.000 0.00 0.00 38.38 3.07
47 48 8.804743 CAATTCACATAGAAAATGAGCAACATC 58.195 33.333 0.00 0.00 40.22 3.06
48 49 7.762615 CCAATTCACATAGAAAATGAGCAACAT 59.237 33.333 0.00 0.00 40.22 2.71
49 50 7.092079 CCAATTCACATAGAAAATGAGCAACA 58.908 34.615 0.00 0.00 40.22 3.33
50 51 6.035327 GCCAATTCACATAGAAAATGAGCAAC 59.965 38.462 0.00 0.00 40.22 4.17
51 52 6.101332 GCCAATTCACATAGAAAATGAGCAA 58.899 36.000 0.00 0.00 40.22 3.91
52 53 5.185442 TGCCAATTCACATAGAAAATGAGCA 59.815 36.000 0.00 0.00 40.22 4.26
53 54 5.653507 TGCCAATTCACATAGAAAATGAGC 58.346 37.500 0.00 0.00 40.22 4.26
54 55 6.860080 ACTGCCAATTCACATAGAAAATGAG 58.140 36.000 0.00 0.00 40.22 2.90
55 56 6.839124 ACTGCCAATTCACATAGAAAATGA 57.161 33.333 0.00 0.00 40.22 2.57
56 57 9.241317 GAATACTGCCAATTCACATAGAAAATG 57.759 33.333 0.00 0.00 40.22 2.32
57 58 9.193806 AGAATACTGCCAATTCACATAGAAAAT 57.806 29.630 5.80 0.00 40.22 1.82
58 59 8.579850 AGAATACTGCCAATTCACATAGAAAA 57.420 30.769 5.80 0.00 40.22 2.29
59 60 7.828717 TGAGAATACTGCCAATTCACATAGAAA 59.171 33.333 5.80 0.00 40.22 2.52
60 61 7.337938 TGAGAATACTGCCAATTCACATAGAA 58.662 34.615 5.80 0.00 41.28 2.10
61 62 6.888105 TGAGAATACTGCCAATTCACATAGA 58.112 36.000 5.80 0.00 36.09 1.98
62 63 6.765036 ACTGAGAATACTGCCAATTCACATAG 59.235 38.462 0.00 0.00 34.74 2.23
63 64 6.539826 CACTGAGAATACTGCCAATTCACATA 59.460 38.462 0.00 0.00 34.74 2.29
64 65 5.356190 CACTGAGAATACTGCCAATTCACAT 59.644 40.000 0.00 0.00 34.74 3.21
65 66 4.696877 CACTGAGAATACTGCCAATTCACA 59.303 41.667 0.00 4.83 36.09 3.58
66 67 4.697352 ACACTGAGAATACTGCCAATTCAC 59.303 41.667 0.00 1.17 36.09 3.18
67 68 4.910195 ACACTGAGAATACTGCCAATTCA 58.090 39.130 0.00 0.00 36.09 2.57
68 69 5.182001 ACAACACTGAGAATACTGCCAATTC 59.818 40.000 0.00 0.00 34.23 2.17
69 70 5.072741 ACAACACTGAGAATACTGCCAATT 58.927 37.500 0.00 0.00 0.00 2.32
70 71 4.655963 ACAACACTGAGAATACTGCCAAT 58.344 39.130 0.00 0.00 0.00 3.16
71 72 4.085357 ACAACACTGAGAATACTGCCAA 57.915 40.909 0.00 0.00 0.00 4.52
72 73 3.769739 ACAACACTGAGAATACTGCCA 57.230 42.857 0.00 0.00 0.00 4.92
73 74 6.018669 GCTAATACAACACTGAGAATACTGCC 60.019 42.308 0.00 0.00 0.00 4.85
74 75 6.758886 AGCTAATACAACACTGAGAATACTGC 59.241 38.462 0.00 0.00 0.00 4.40
75 76 7.976175 TCAGCTAATACAACACTGAGAATACTG 59.024 37.037 0.00 0.00 32.65 2.74
76 77 7.976734 GTCAGCTAATACAACACTGAGAATACT 59.023 37.037 0.00 0.00 38.01 2.12
77 78 7.222999 GGTCAGCTAATACAACACTGAGAATAC 59.777 40.741 0.00 0.00 38.01 1.89
78 79 7.265673 GGTCAGCTAATACAACACTGAGAATA 58.734 38.462 0.00 0.00 38.01 1.75
79 80 6.109359 GGTCAGCTAATACAACACTGAGAAT 58.891 40.000 0.00 0.00 38.01 2.40
80 81 5.479306 GGTCAGCTAATACAACACTGAGAA 58.521 41.667 0.00 0.00 38.01 2.87
81 82 4.380550 CGGTCAGCTAATACAACACTGAGA 60.381 45.833 0.00 0.00 38.01 3.27
82 83 3.859961 CGGTCAGCTAATACAACACTGAG 59.140 47.826 0.00 0.00 38.01 3.35
83 84 3.508402 TCGGTCAGCTAATACAACACTGA 59.492 43.478 0.00 0.00 35.11 3.41
84 85 3.845178 TCGGTCAGCTAATACAACACTG 58.155 45.455 0.00 0.00 0.00 3.66
85 86 4.530710 TTCGGTCAGCTAATACAACACT 57.469 40.909 0.00 0.00 0.00 3.55
86 87 4.689345 AGTTTCGGTCAGCTAATACAACAC 59.311 41.667 0.00 0.00 0.00 3.32
87 88 4.688879 CAGTTTCGGTCAGCTAATACAACA 59.311 41.667 0.00 0.00 0.00 3.33
88 89 4.689345 ACAGTTTCGGTCAGCTAATACAAC 59.311 41.667 0.00 0.00 0.00 3.32
89 90 4.890088 ACAGTTTCGGTCAGCTAATACAA 58.110 39.130 0.00 0.00 0.00 2.41
90 91 4.530710 ACAGTTTCGGTCAGCTAATACA 57.469 40.909 0.00 0.00 0.00 2.29
91 92 4.503370 GCTACAGTTTCGGTCAGCTAATAC 59.497 45.833 0.00 0.00 0.00 1.89
92 93 4.158949 TGCTACAGTTTCGGTCAGCTAATA 59.841 41.667 0.00 0.00 0.00 0.98
93 94 3.056107 TGCTACAGTTTCGGTCAGCTAAT 60.056 43.478 0.00 0.00 0.00 1.73
94 95 2.297880 TGCTACAGTTTCGGTCAGCTAA 59.702 45.455 0.00 0.00 0.00 3.09
95 96 1.890489 TGCTACAGTTTCGGTCAGCTA 59.110 47.619 0.00 0.00 0.00 3.32
96 97 0.679505 TGCTACAGTTTCGGTCAGCT 59.320 50.000 0.00 0.00 0.00 4.24
97 98 1.726853 ATGCTACAGTTTCGGTCAGC 58.273 50.000 0.00 0.00 0.00 4.26
98 99 4.749245 AAAATGCTACAGTTTCGGTCAG 57.251 40.909 0.00 0.00 24.46 3.51
99 100 4.576873 TCAAAAATGCTACAGTTTCGGTCA 59.423 37.500 0.00 0.00 30.35 4.02
100 101 5.103290 TCAAAAATGCTACAGTTTCGGTC 57.897 39.130 0.00 0.00 30.35 4.79
101 102 5.705609 ATCAAAAATGCTACAGTTTCGGT 57.294 34.783 0.00 0.00 30.35 4.69
102 103 5.345741 CCAATCAAAAATGCTACAGTTTCGG 59.654 40.000 0.00 0.00 30.35 4.30
103 104 5.920273 ACCAATCAAAAATGCTACAGTTTCG 59.080 36.000 0.00 0.00 30.35 3.46
104 105 7.713764 AACCAATCAAAAATGCTACAGTTTC 57.286 32.000 0.00 0.00 30.35 2.78
105 106 7.012232 CCAAACCAATCAAAAATGCTACAGTTT 59.988 33.333 0.00 0.00 33.01 2.66
106 107 6.482973 CCAAACCAATCAAAAATGCTACAGTT 59.517 34.615 0.00 0.00 0.00 3.16
107 108 5.990996 CCAAACCAATCAAAAATGCTACAGT 59.009 36.000 0.00 0.00 0.00 3.55
108 109 5.106987 GCCAAACCAATCAAAAATGCTACAG 60.107 40.000 0.00 0.00 0.00 2.74
109 110 4.754114 GCCAAACCAATCAAAAATGCTACA 59.246 37.500 0.00 0.00 0.00 2.74
110 111 4.754114 TGCCAAACCAATCAAAAATGCTAC 59.246 37.500 0.00 0.00 0.00 3.58
111 112 4.965814 TGCCAAACCAATCAAAAATGCTA 58.034 34.783 0.00 0.00 0.00 3.49
112 113 3.818180 TGCCAAACCAATCAAAAATGCT 58.182 36.364 0.00 0.00 0.00 3.79
113 114 4.769859 ATGCCAAACCAATCAAAAATGC 57.230 36.364 0.00 0.00 0.00 3.56
114 115 5.009811 ACCAATGCCAAACCAATCAAAAATG 59.990 36.000 0.00 0.00 0.00 2.32
115 116 5.139001 ACCAATGCCAAACCAATCAAAAAT 58.861 33.333 0.00 0.00 0.00 1.82
116 117 4.530875 ACCAATGCCAAACCAATCAAAAA 58.469 34.783 0.00 0.00 0.00 1.94
117 118 4.162040 ACCAATGCCAAACCAATCAAAA 57.838 36.364 0.00 0.00 0.00 2.44
118 119 3.853355 ACCAATGCCAAACCAATCAAA 57.147 38.095 0.00 0.00 0.00 2.69
119 120 3.135348 TCAACCAATGCCAAACCAATCAA 59.865 39.130 0.00 0.00 0.00 2.57
120 121 2.702478 TCAACCAATGCCAAACCAATCA 59.298 40.909 0.00 0.00 0.00 2.57
121 122 3.399440 TCAACCAATGCCAAACCAATC 57.601 42.857 0.00 0.00 0.00 2.67
122 123 4.370094 AATCAACCAATGCCAAACCAAT 57.630 36.364 0.00 0.00 0.00 3.16
123 124 3.853355 AATCAACCAATGCCAAACCAA 57.147 38.095 0.00 0.00 0.00 3.67
124 125 3.853355 AAATCAACCAATGCCAAACCA 57.147 38.095 0.00 0.00 0.00 3.67
125 126 3.304592 GCAAAATCAACCAATGCCAAACC 60.305 43.478 0.00 0.00 0.00 3.27
126 127 3.565063 AGCAAAATCAACCAATGCCAAAC 59.435 39.130 0.00 0.00 37.73 2.93
127 128 3.814283 GAGCAAAATCAACCAATGCCAAA 59.186 39.130 0.00 0.00 37.73 3.28
128 129 3.071312 AGAGCAAAATCAACCAATGCCAA 59.929 39.130 0.00 0.00 37.73 4.52
129 130 2.633967 AGAGCAAAATCAACCAATGCCA 59.366 40.909 0.00 0.00 37.73 4.92
130 131 2.997986 CAGAGCAAAATCAACCAATGCC 59.002 45.455 0.00 0.00 37.73 4.40
131 132 2.414138 GCAGAGCAAAATCAACCAATGC 59.586 45.455 0.00 0.00 37.28 3.56
132 133 2.997986 GGCAGAGCAAAATCAACCAATG 59.002 45.455 0.00 0.00 0.00 2.82
133 134 2.353011 CGGCAGAGCAAAATCAACCAAT 60.353 45.455 0.00 0.00 0.00 3.16
134 135 1.000385 CGGCAGAGCAAAATCAACCAA 60.000 47.619 0.00 0.00 0.00 3.67
135 136 0.597568 CGGCAGAGCAAAATCAACCA 59.402 50.000 0.00 0.00 0.00 3.67
136 137 0.109132 CCGGCAGAGCAAAATCAACC 60.109 55.000 0.00 0.00 0.00 3.77
137 138 0.733909 GCCGGCAGAGCAAAATCAAC 60.734 55.000 24.80 0.00 0.00 3.18
138 139 0.895100 AGCCGGCAGAGCAAAATCAA 60.895 50.000 31.54 0.00 0.00 2.57
139 140 1.303561 AGCCGGCAGAGCAAAATCA 60.304 52.632 31.54 0.00 0.00 2.57
140 141 1.138247 CAGCCGGCAGAGCAAAATC 59.862 57.895 31.54 0.00 0.00 2.17
141 142 2.998279 GCAGCCGGCAGAGCAAAAT 61.998 57.895 31.54 0.00 43.97 1.82
142 143 3.673484 GCAGCCGGCAGAGCAAAA 61.673 61.111 31.54 0.00 43.97 2.44
162 163 2.429571 TTTCCTTCGACGACGCGG 60.430 61.111 12.47 5.80 39.58 6.46
163 164 1.000233 TTCTTTCCTTCGACGACGCG 61.000 55.000 3.53 3.53 39.58 6.01
164 165 0.708918 CTTCTTTCCTTCGACGACGC 59.291 55.000 1.48 0.00 39.58 5.19
165 166 1.337821 CCTTCTTTCCTTCGACGACG 58.662 55.000 0.00 0.00 41.26 5.12
166 167 1.271656 TCCCTTCTTTCCTTCGACGAC 59.728 52.381 0.00 0.00 0.00 4.34
167 168 1.544691 CTCCCTTCTTTCCTTCGACGA 59.455 52.381 0.00 0.00 0.00 4.20
168 169 1.544691 TCTCCCTTCTTTCCTTCGACG 59.455 52.381 0.00 0.00 0.00 5.12
169 170 2.299297 TGTCTCCCTTCTTTCCTTCGAC 59.701 50.000 0.00 0.00 0.00 4.20
170 171 2.605257 TGTCTCCCTTCTTTCCTTCGA 58.395 47.619 0.00 0.00 0.00 3.71
171 172 3.330267 CTTGTCTCCCTTCTTTCCTTCG 58.670 50.000 0.00 0.00 0.00 3.79
172 173 3.680490 CCTTGTCTCCCTTCTTTCCTTC 58.320 50.000 0.00 0.00 0.00 3.46
173 174 2.224892 GCCTTGTCTCCCTTCTTTCCTT 60.225 50.000 0.00 0.00 0.00 3.36
174 175 1.352687 GCCTTGTCTCCCTTCTTTCCT 59.647 52.381 0.00 0.00 0.00 3.36
175 176 1.614583 GGCCTTGTCTCCCTTCTTTCC 60.615 57.143 0.00 0.00 0.00 3.13
176 177 1.073923 TGGCCTTGTCTCCCTTCTTTC 59.926 52.381 3.32 0.00 0.00 2.62
177 178 1.149101 TGGCCTTGTCTCCCTTCTTT 58.851 50.000 3.32 0.00 0.00 2.52
178 179 1.149101 TTGGCCTTGTCTCCCTTCTT 58.851 50.000 3.32 0.00 0.00 2.52
179 180 1.149101 TTTGGCCTTGTCTCCCTTCT 58.851 50.000 3.32 0.00 0.00 2.85
180 181 1.613925 GTTTTGGCCTTGTCTCCCTTC 59.386 52.381 3.32 0.00 0.00 3.46
181 182 1.063266 TGTTTTGGCCTTGTCTCCCTT 60.063 47.619 3.32 0.00 0.00 3.95
182 183 0.555769 TGTTTTGGCCTTGTCTCCCT 59.444 50.000 3.32 0.00 0.00 4.20
183 184 0.961753 CTGTTTTGGCCTTGTCTCCC 59.038 55.000 3.32 0.00 0.00 4.30
184 185 0.961753 CCTGTTTTGGCCTTGTCTCC 59.038 55.000 3.32 0.00 0.00 3.71
185 186 1.882623 CTCCTGTTTTGGCCTTGTCTC 59.117 52.381 3.32 0.00 0.00 3.36
186 187 1.479389 CCTCCTGTTTTGGCCTTGTCT 60.479 52.381 3.32 0.00 0.00 3.41
187 188 0.961753 CCTCCTGTTTTGGCCTTGTC 59.038 55.000 3.32 0.00 0.00 3.18
188 189 0.555769 TCCTCCTGTTTTGGCCTTGT 59.444 50.000 3.32 0.00 0.00 3.16
189 190 1.251251 CTCCTCCTGTTTTGGCCTTG 58.749 55.000 3.32 0.00 0.00 3.61
190 191 0.540597 GCTCCTCCTGTTTTGGCCTT 60.541 55.000 3.32 0.00 0.00 4.35
191 192 1.075659 GCTCCTCCTGTTTTGGCCT 59.924 57.895 3.32 0.00 0.00 5.19
192 193 1.228552 TGCTCCTCCTGTTTTGGCC 60.229 57.895 0.00 0.00 0.00 5.36
193 194 0.538287 ACTGCTCCTCCTGTTTTGGC 60.538 55.000 0.00 0.00 0.00 4.52
194 195 1.986882 AACTGCTCCTCCTGTTTTGG 58.013 50.000 0.00 0.00 0.00 3.28
195 196 4.137543 AGTTAACTGCTCCTCCTGTTTTG 58.862 43.478 7.48 0.00 0.00 2.44
196 197 4.439253 AGTTAACTGCTCCTCCTGTTTT 57.561 40.909 7.48 0.00 0.00 2.43
197 198 4.838986 TCTAGTTAACTGCTCCTCCTGTTT 59.161 41.667 18.56 0.00 0.00 2.83
198 199 4.221041 GTCTAGTTAACTGCTCCTCCTGTT 59.779 45.833 18.56 0.00 0.00 3.16
199 200 3.764972 GTCTAGTTAACTGCTCCTCCTGT 59.235 47.826 18.56 0.00 0.00 4.00
200 201 3.131400 GGTCTAGTTAACTGCTCCTCCTG 59.869 52.174 18.56 0.00 0.00 3.86
201 202 3.367321 GGTCTAGTTAACTGCTCCTCCT 58.633 50.000 18.56 0.00 0.00 3.69
202 203 2.431419 GGGTCTAGTTAACTGCTCCTCC 59.569 54.545 18.56 10.84 0.00 4.30
203 204 3.097614 TGGGTCTAGTTAACTGCTCCTC 58.902 50.000 18.56 10.71 0.00 3.71
204 205 2.832733 GTGGGTCTAGTTAACTGCTCCT 59.167 50.000 18.56 0.00 0.00 3.69
205 206 2.093606 GGTGGGTCTAGTTAACTGCTCC 60.094 54.545 18.56 15.21 0.00 4.70
206 207 2.093606 GGGTGGGTCTAGTTAACTGCTC 60.094 54.545 18.56 8.69 0.00 4.26
207 208 1.907255 GGGTGGGTCTAGTTAACTGCT 59.093 52.381 18.56 0.00 0.00 4.24
208 209 1.065636 GGGGTGGGTCTAGTTAACTGC 60.066 57.143 18.56 8.05 0.00 4.40
209 210 2.262637 TGGGGTGGGTCTAGTTAACTG 58.737 52.381 18.56 8.35 0.00 3.16
210 211 2.727429 TGGGGTGGGTCTAGTTAACT 57.273 50.000 13.68 13.68 0.00 2.24
211 212 2.841881 TGATGGGGTGGGTCTAGTTAAC 59.158 50.000 0.00 0.00 0.00 2.01
212 213 3.208570 TGATGGGGTGGGTCTAGTTAA 57.791 47.619 0.00 0.00 0.00 2.01
213 214 2.953093 TGATGGGGTGGGTCTAGTTA 57.047 50.000 0.00 0.00 0.00 2.24
214 215 1.916181 CTTGATGGGGTGGGTCTAGTT 59.084 52.381 0.00 0.00 0.00 2.24
215 216 1.584724 CTTGATGGGGTGGGTCTAGT 58.415 55.000 0.00 0.00 0.00 2.57
216 217 0.181350 GCTTGATGGGGTGGGTCTAG 59.819 60.000 0.00 0.00 0.00 2.43
217 218 0.548926 TGCTTGATGGGGTGGGTCTA 60.549 55.000 0.00 0.00 0.00 2.59
218 219 1.852157 TGCTTGATGGGGTGGGTCT 60.852 57.895 0.00 0.00 0.00 3.85
219 220 1.379044 CTGCTTGATGGGGTGGGTC 60.379 63.158 0.00 0.00 0.00 4.46
220 221 1.852157 TCTGCTTGATGGGGTGGGT 60.852 57.895 0.00 0.00 0.00 4.51
221 222 1.379044 GTCTGCTTGATGGGGTGGG 60.379 63.158 0.00 0.00 0.00 4.61
222 223 1.746615 CGTCTGCTTGATGGGGTGG 60.747 63.158 0.00 0.00 0.00 4.61
223 224 1.003355 ACGTCTGCTTGATGGGGTG 60.003 57.895 0.00 0.00 36.05 4.61
224 225 1.003355 CACGTCTGCTTGATGGGGT 60.003 57.895 0.00 0.00 36.05 4.95
225 226 3.895025 CACGTCTGCTTGATGGGG 58.105 61.111 0.00 0.00 36.05 4.96
226 227 2.401766 GCCACGTCTGCTTGATGGG 61.402 63.158 0.00 0.84 36.05 4.00
227 228 1.642037 CTGCCACGTCTGCTTGATGG 61.642 60.000 7.97 0.00 36.05 3.51
228 229 0.952497 ACTGCCACGTCTGCTTGATG 60.952 55.000 7.97 0.00 37.69 3.07
229 230 0.671781 GACTGCCACGTCTGCTTGAT 60.672 55.000 7.97 0.00 0.00 2.57
230 231 1.300931 GACTGCCACGTCTGCTTGA 60.301 57.895 7.97 0.00 0.00 3.02
231 232 2.661566 CGACTGCCACGTCTGCTTG 61.662 63.158 7.97 4.07 0.00 4.01
232 233 2.356313 CGACTGCCACGTCTGCTT 60.356 61.111 7.97 0.00 0.00 3.91
233 234 3.606662 ACGACTGCCACGTCTGCT 61.607 61.111 7.97 0.00 39.87 4.24
238 239 2.279918 GTTGGACGACTGCCACGT 60.280 61.111 0.00 0.00 46.58 4.49
239 240 3.403057 CGTTGGACGACTGCCACG 61.403 66.667 0.00 0.00 46.05 4.94
240 241 3.712881 GCGTTGGACGACTGCCAC 61.713 66.667 4.46 0.00 46.05 5.01
252 253 3.781770 TTTTGCTTGCGGGGCGTTG 62.782 57.895 0.00 0.00 0.00 4.10
253 254 3.532155 TTTTGCTTGCGGGGCGTT 61.532 55.556 0.00 0.00 0.00 4.84
254 255 4.279043 GTTTTGCTTGCGGGGCGT 62.279 61.111 0.00 0.00 0.00 5.68
256 257 3.922640 TGGTTTTGCTTGCGGGGC 61.923 61.111 0.00 0.00 0.00 5.80
257 258 2.028925 GTGGTTTTGCTTGCGGGG 59.971 61.111 0.00 0.00 0.00 5.73
258 259 2.028925 GGTGGTTTTGCTTGCGGG 59.971 61.111 0.00 0.00 0.00 6.13
259 260 1.300080 CAGGTGGTTTTGCTTGCGG 60.300 57.895 0.00 0.00 0.00 5.69
260 261 0.665835 TACAGGTGGTTTTGCTTGCG 59.334 50.000 0.00 0.00 0.00 4.85
261 262 1.953686 TCTACAGGTGGTTTTGCTTGC 59.046 47.619 0.00 0.00 0.00 4.01
262 263 4.359706 GTTTCTACAGGTGGTTTTGCTTG 58.640 43.478 0.00 0.00 0.00 4.01
263 264 3.383505 GGTTTCTACAGGTGGTTTTGCTT 59.616 43.478 0.00 0.00 0.00 3.91
264 265 2.956333 GGTTTCTACAGGTGGTTTTGCT 59.044 45.455 0.00 0.00 0.00 3.91
265 266 2.691011 TGGTTTCTACAGGTGGTTTTGC 59.309 45.455 0.00 0.00 0.00 3.68
266 267 3.951680 AGTGGTTTCTACAGGTGGTTTTG 59.048 43.478 0.00 0.00 0.00 2.44
267 268 4.245251 AGTGGTTTCTACAGGTGGTTTT 57.755 40.909 0.00 0.00 0.00 2.43
268 269 3.945640 AGTGGTTTCTACAGGTGGTTT 57.054 42.857 0.00 0.00 0.00 3.27
269 270 6.691255 TTATAGTGGTTTCTACAGGTGGTT 57.309 37.500 0.00 0.00 0.00 3.67
270 271 6.442564 TGATTATAGTGGTTTCTACAGGTGGT 59.557 38.462 0.00 0.00 0.00 4.16
271 272 6.884832 TGATTATAGTGGTTTCTACAGGTGG 58.115 40.000 0.00 0.00 0.00 4.61
272 273 6.480320 GCTGATTATAGTGGTTTCTACAGGTG 59.520 42.308 0.00 0.00 0.00 4.00
273 274 6.156256 TGCTGATTATAGTGGTTTCTACAGGT 59.844 38.462 0.00 0.00 0.00 4.00
274 275 6.480320 GTGCTGATTATAGTGGTTTCTACAGG 59.520 42.308 0.00 0.00 0.00 4.00
275 276 7.041721 TGTGCTGATTATAGTGGTTTCTACAG 58.958 38.462 0.00 0.00 0.00 2.74
276 277 6.941857 TGTGCTGATTATAGTGGTTTCTACA 58.058 36.000 0.00 0.00 0.00 2.74
277 278 7.011482 CCTTGTGCTGATTATAGTGGTTTCTAC 59.989 40.741 0.00 0.00 0.00 2.59
278 279 7.047891 CCTTGTGCTGATTATAGTGGTTTCTA 58.952 38.462 0.00 0.00 0.00 2.10
279 280 5.882557 CCTTGTGCTGATTATAGTGGTTTCT 59.117 40.000 0.00 0.00 0.00 2.52
280 281 5.066505 CCCTTGTGCTGATTATAGTGGTTTC 59.933 44.000 0.00 0.00 0.00 2.78
281 282 4.949856 CCCTTGTGCTGATTATAGTGGTTT 59.050 41.667 0.00 0.00 0.00 3.27
282 283 4.526970 CCCTTGTGCTGATTATAGTGGTT 58.473 43.478 0.00 0.00 0.00 3.67
283 284 3.117888 CCCCTTGTGCTGATTATAGTGGT 60.118 47.826 0.00 0.00 0.00 4.16
284 285 3.480470 CCCCTTGTGCTGATTATAGTGG 58.520 50.000 0.00 0.00 0.00 4.00
285 286 3.117888 ACCCCCTTGTGCTGATTATAGTG 60.118 47.826 0.00 0.00 0.00 2.74
286 287 3.117888 CACCCCCTTGTGCTGATTATAGT 60.118 47.826 0.00 0.00 0.00 2.12
287 288 3.136443 TCACCCCCTTGTGCTGATTATAG 59.864 47.826 0.00 0.00 36.17 1.31
288 289 3.119319 TCACCCCCTTGTGCTGATTATA 58.881 45.455 0.00 0.00 36.17 0.98
289 290 1.922447 TCACCCCCTTGTGCTGATTAT 59.078 47.619 0.00 0.00 36.17 1.28
290 291 1.367346 TCACCCCCTTGTGCTGATTA 58.633 50.000 0.00 0.00 36.17 1.75
291 292 0.706433 ATCACCCCCTTGTGCTGATT 59.294 50.000 0.00 0.00 36.17 2.57
292 293 0.706433 AATCACCCCCTTGTGCTGAT 59.294 50.000 0.00 0.00 36.17 2.90
293 294 0.482446 AAATCACCCCCTTGTGCTGA 59.518 50.000 0.00 0.00 36.17 4.26
294 295 0.604578 CAAATCACCCCCTTGTGCTG 59.395 55.000 0.00 0.00 36.17 4.41
295 296 0.482446 TCAAATCACCCCCTTGTGCT 59.518 50.000 0.00 0.00 36.17 4.40
296 297 0.603065 GTCAAATCACCCCCTTGTGC 59.397 55.000 0.00 0.00 36.17 4.57
297 298 1.888512 CAGTCAAATCACCCCCTTGTG 59.111 52.381 0.00 0.00 37.59 3.33
298 299 1.203050 CCAGTCAAATCACCCCCTTGT 60.203 52.381 0.00 0.00 0.00 3.16
299 300 1.203050 ACCAGTCAAATCACCCCCTTG 60.203 52.381 0.00 0.00 0.00 3.61
300 301 1.158007 ACCAGTCAAATCACCCCCTT 58.842 50.000 0.00 0.00 0.00 3.95
301 302 2.053747 TACCAGTCAAATCACCCCCT 57.946 50.000 0.00 0.00 0.00 4.79
302 303 3.382083 AATACCAGTCAAATCACCCCC 57.618 47.619 0.00 0.00 0.00 5.40
303 304 5.130477 TCTCTAATACCAGTCAAATCACCCC 59.870 44.000 0.00 0.00 0.00 4.95
304 305 6.049790 GTCTCTAATACCAGTCAAATCACCC 58.950 44.000 0.00 0.00 0.00 4.61
305 306 6.049790 GGTCTCTAATACCAGTCAAATCACC 58.950 44.000 0.00 0.00 36.96 4.02
306 307 6.879400 AGGTCTCTAATACCAGTCAAATCAC 58.121 40.000 0.00 0.00 39.64 3.06
307 308 6.667848 TGAGGTCTCTAATACCAGTCAAATCA 59.332 38.462 0.00 0.00 39.64 2.57
308 309 7.113658 TGAGGTCTCTAATACCAGTCAAATC 57.886 40.000 0.00 0.00 39.64 2.17
309 310 6.098982 CCTGAGGTCTCTAATACCAGTCAAAT 59.901 42.308 0.00 0.00 39.64 2.32
310 311 5.422331 CCTGAGGTCTCTAATACCAGTCAAA 59.578 44.000 0.00 0.00 39.64 2.69
311 312 4.956700 CCTGAGGTCTCTAATACCAGTCAA 59.043 45.833 0.00 0.00 39.64 3.18
312 313 4.537751 CCTGAGGTCTCTAATACCAGTCA 58.462 47.826 0.00 0.00 39.64 3.41
313 314 3.892588 CCCTGAGGTCTCTAATACCAGTC 59.107 52.174 0.00 0.00 39.64 3.51
314 315 3.374318 CCCCTGAGGTCTCTAATACCAGT 60.374 52.174 0.00 0.00 39.64 4.00
315 316 3.235200 CCCCTGAGGTCTCTAATACCAG 58.765 54.545 0.00 0.00 39.64 4.00
316 317 2.090719 CCCCCTGAGGTCTCTAATACCA 60.091 54.545 0.00 0.00 39.64 3.25
317 318 2.090663 ACCCCCTGAGGTCTCTAATACC 60.091 54.545 0.00 0.00 33.81 2.73
318 319 3.331718 ACCCCCTGAGGTCTCTAATAC 57.668 52.381 0.00 0.00 33.81 1.89
319 320 3.654273 CAACCCCCTGAGGTCTCTAATA 58.346 50.000 0.00 0.00 40.05 0.98
320 321 2.482494 CAACCCCCTGAGGTCTCTAAT 58.518 52.381 0.00 0.00 40.05 1.73
321 322 1.952621 CAACCCCCTGAGGTCTCTAA 58.047 55.000 0.00 0.00 40.05 2.10
322 323 0.617820 GCAACCCCCTGAGGTCTCTA 60.618 60.000 0.00 0.00 40.05 2.43
323 324 1.920835 GCAACCCCCTGAGGTCTCT 60.921 63.158 0.00 0.00 40.05 3.10
324 325 1.492993 AAGCAACCCCCTGAGGTCTC 61.493 60.000 0.00 0.00 40.05 3.36
325 326 0.178873 TAAGCAACCCCCTGAGGTCT 60.179 55.000 0.00 0.00 40.05 3.85
326 327 0.696501 TTAAGCAACCCCCTGAGGTC 59.303 55.000 0.00 0.00 40.05 3.85
327 328 0.404426 GTTAAGCAACCCCCTGAGGT 59.596 55.000 0.00 0.00 44.00 3.85
328 329 0.698818 AGTTAAGCAACCCCCTGAGG 59.301 55.000 0.00 0.00 35.05 3.86
329 330 1.614317 CCAGTTAAGCAACCCCCTGAG 60.614 57.143 0.00 0.00 35.05 3.35
330 331 0.404040 CCAGTTAAGCAACCCCCTGA 59.596 55.000 0.00 0.00 35.05 3.86
331 332 0.112412 ACCAGTTAAGCAACCCCCTG 59.888 55.000 0.00 0.00 35.05 4.45
332 333 0.857675 AACCAGTTAAGCAACCCCCT 59.142 50.000 0.00 0.00 35.05 4.79
333 334 1.712056 AAACCAGTTAAGCAACCCCC 58.288 50.000 0.00 0.00 35.05 5.40
334 335 3.257375 CCTAAAACCAGTTAAGCAACCCC 59.743 47.826 0.00 0.00 35.05 4.95
335 336 3.893200 ACCTAAAACCAGTTAAGCAACCC 59.107 43.478 0.00 0.00 35.05 4.11
336 337 4.825634 AGACCTAAAACCAGTTAAGCAACC 59.174 41.667 0.00 0.00 35.05 3.77
337 338 6.387041 AAGACCTAAAACCAGTTAAGCAAC 57.613 37.500 0.00 0.00 34.67 4.17
338 339 7.229907 CCTTAAGACCTAAAACCAGTTAAGCAA 59.770 37.037 3.36 0.00 0.00 3.91
339 340 6.713450 CCTTAAGACCTAAAACCAGTTAAGCA 59.287 38.462 3.36 0.00 0.00 3.91
340 341 6.150641 CCCTTAAGACCTAAAACCAGTTAAGC 59.849 42.308 3.36 0.00 0.00 3.09
341 342 6.657966 CCCCTTAAGACCTAAAACCAGTTAAG 59.342 42.308 3.36 0.00 0.00 1.85
342 343 6.103057 ACCCCTTAAGACCTAAAACCAGTTAA 59.897 38.462 3.36 0.00 0.00 2.01
343 344 5.612261 ACCCCTTAAGACCTAAAACCAGTTA 59.388 40.000 3.36 0.00 0.00 2.24
344 345 4.417854 ACCCCTTAAGACCTAAAACCAGTT 59.582 41.667 3.36 0.00 0.00 3.16
345 346 3.985452 ACCCCTTAAGACCTAAAACCAGT 59.015 43.478 3.36 0.00 0.00 4.00
346 347 4.042435 TCACCCCTTAAGACCTAAAACCAG 59.958 45.833 3.36 0.00 0.00 4.00
347 348 3.982052 TCACCCCTTAAGACCTAAAACCA 59.018 43.478 3.36 0.00 0.00 3.67
348 349 4.645863 TCACCCCTTAAGACCTAAAACC 57.354 45.455 3.36 0.00 0.00 3.27
349 350 7.886970 ACTAATTCACCCCTTAAGACCTAAAAC 59.113 37.037 3.36 0.00 0.00 2.43
350 351 7.992295 ACTAATTCACCCCTTAAGACCTAAAA 58.008 34.615 3.36 0.00 0.00 1.52
351 352 7.578458 ACTAATTCACCCCTTAAGACCTAAA 57.422 36.000 3.36 0.00 0.00 1.85
352 353 6.127253 CGACTAATTCACCCCTTAAGACCTAA 60.127 42.308 3.36 0.00 0.00 2.69
353 354 5.361857 CGACTAATTCACCCCTTAAGACCTA 59.638 44.000 3.36 0.00 0.00 3.08
354 355 4.161754 CGACTAATTCACCCCTTAAGACCT 59.838 45.833 3.36 0.00 0.00 3.85
355 356 4.439968 CGACTAATTCACCCCTTAAGACC 58.560 47.826 3.36 0.00 0.00 3.85
356 357 4.081254 ACCGACTAATTCACCCCTTAAGAC 60.081 45.833 3.36 0.00 0.00 3.01
357 358 4.098894 ACCGACTAATTCACCCCTTAAGA 58.901 43.478 3.36 0.00 0.00 2.10
358 359 4.482952 ACCGACTAATTCACCCCTTAAG 57.517 45.455 0.00 0.00 0.00 1.85
359 360 4.914177 AACCGACTAATTCACCCCTTAA 57.086 40.909 0.00 0.00 0.00 1.85
360 361 4.041938 ACAAACCGACTAATTCACCCCTTA 59.958 41.667 0.00 0.00 0.00 2.69
361 362 3.181437 ACAAACCGACTAATTCACCCCTT 60.181 43.478 0.00 0.00 0.00 3.95
362 363 2.374170 ACAAACCGACTAATTCACCCCT 59.626 45.455 0.00 0.00 0.00 4.79
363 364 2.486592 CACAAACCGACTAATTCACCCC 59.513 50.000 0.00 0.00 0.00 4.95
364 365 3.404899 TCACAAACCGACTAATTCACCC 58.595 45.455 0.00 0.00 0.00 4.61
365 366 5.209977 GTTTCACAAACCGACTAATTCACC 58.790 41.667 0.00 0.00 35.35 4.02
378 379 2.204461 CCCCCGGGGTTTCACAAAC 61.204 63.158 37.66 0.00 38.25 2.93
379 380 1.731324 ATCCCCCGGGGTTTCACAAA 61.731 55.000 37.66 12.62 44.74 2.83
380 381 2.164279 ATCCCCCGGGGTTTCACAA 61.164 57.895 37.66 14.06 44.74 3.33
381 382 2.533232 ATCCCCCGGGGTTTCACA 60.533 61.111 37.66 14.45 44.74 3.58
382 383 1.933307 ATCATCCCCCGGGGTTTCAC 61.933 60.000 37.66 0.00 44.74 3.18
383 384 1.621205 ATCATCCCCCGGGGTTTCA 60.621 57.895 37.66 19.38 44.74 2.69
384 385 1.150764 GATCATCCCCCGGGGTTTC 59.849 63.158 37.66 21.33 44.74 2.78
385 386 1.308746 AGATCATCCCCCGGGGTTT 60.309 57.895 37.66 22.04 44.74 3.27
386 387 2.078665 CAGATCATCCCCCGGGGTT 61.079 63.158 37.66 22.44 44.74 4.11
387 388 2.448542 CAGATCATCCCCCGGGGT 60.449 66.667 37.66 20.07 44.74 4.95
388 389 3.252284 CCAGATCATCCCCCGGGG 61.252 72.222 34.65 34.65 46.11 5.73
389 390 1.136329 AATCCAGATCATCCCCCGGG 61.136 60.000 15.80 15.80 0.00 5.73
390 391 0.773644 AAATCCAGATCATCCCCCGG 59.226 55.000 0.00 0.00 0.00 5.73
391 392 1.701847 AGAAATCCAGATCATCCCCCG 59.298 52.381 0.00 0.00 0.00 5.73
392 393 3.891805 AAGAAATCCAGATCATCCCCC 57.108 47.619 0.00 0.00 0.00 5.40
393 394 6.192970 TCTAAAGAAATCCAGATCATCCCC 57.807 41.667 0.00 0.00 0.00 4.81
394 395 8.525290 TTTTCTAAAGAAATCCAGATCATCCC 57.475 34.615 6.01 0.00 42.83 3.85
420 421 7.339466 AGTGTGAAGACTACTTTGGATGTTTTT 59.661 33.333 0.00 0.00 36.39 1.94
421 422 6.828785 AGTGTGAAGACTACTTTGGATGTTTT 59.171 34.615 0.00 0.00 36.39 2.43
422 423 6.357367 AGTGTGAAGACTACTTTGGATGTTT 58.643 36.000 0.00 0.00 36.39 2.83
423 424 5.930135 AGTGTGAAGACTACTTTGGATGTT 58.070 37.500 0.00 0.00 36.39 2.71
424 425 5.552870 AGTGTGAAGACTACTTTGGATGT 57.447 39.130 0.00 0.00 36.39 3.06
425 426 6.483307 TGAAAGTGTGAAGACTACTTTGGATG 59.517 38.462 5.93 0.00 42.75 3.51
426 427 6.483640 GTGAAAGTGTGAAGACTACTTTGGAT 59.516 38.462 5.93 0.00 42.75 3.41
427 428 5.815740 GTGAAAGTGTGAAGACTACTTTGGA 59.184 40.000 5.93 0.00 42.75 3.53
428 429 5.007724 GGTGAAAGTGTGAAGACTACTTTGG 59.992 44.000 5.93 0.00 42.75 3.28
429 430 5.584649 TGGTGAAAGTGTGAAGACTACTTTG 59.415 40.000 5.93 0.00 42.75 2.77
430 431 5.741011 TGGTGAAAGTGTGAAGACTACTTT 58.259 37.500 0.00 0.00 44.67 2.66
431 432 5.353394 TGGTGAAAGTGTGAAGACTACTT 57.647 39.130 0.00 0.00 39.24 2.24
432 433 5.552870 ATGGTGAAAGTGTGAAGACTACT 57.447 39.130 0.00 0.00 0.00 2.57
433 434 5.560953 GCAATGGTGAAAGTGTGAAGACTAC 60.561 44.000 0.00 0.00 0.00 2.73
434 435 4.515191 GCAATGGTGAAAGTGTGAAGACTA 59.485 41.667 0.00 0.00 0.00 2.59
435 436 3.316308 GCAATGGTGAAAGTGTGAAGACT 59.684 43.478 0.00 0.00 0.00 3.24
436 437 3.066621 TGCAATGGTGAAAGTGTGAAGAC 59.933 43.478 0.00 0.00 0.00 3.01
437 438 3.286353 TGCAATGGTGAAAGTGTGAAGA 58.714 40.909 0.00 0.00 0.00 2.87
438 439 3.713858 TGCAATGGTGAAAGTGTGAAG 57.286 42.857 0.00 0.00 0.00 3.02
439 440 4.180057 GTTTGCAATGGTGAAAGTGTGAA 58.820 39.130 0.00 0.00 0.00 3.18
440 441 3.194329 TGTTTGCAATGGTGAAAGTGTGA 59.806 39.130 0.00 0.00 0.00 3.58
441 442 3.519579 TGTTTGCAATGGTGAAAGTGTG 58.480 40.909 0.00 0.00 0.00 3.82
442 443 3.883830 TGTTTGCAATGGTGAAAGTGT 57.116 38.095 0.00 0.00 0.00 3.55
443 444 5.984926 AGTATTGTTTGCAATGGTGAAAGTG 59.015 36.000 0.00 0.00 44.32 3.16
444 445 6.160576 AGTATTGTTTGCAATGGTGAAAGT 57.839 33.333 0.00 0.00 44.32 2.66
445 446 7.224362 TGAAAGTATTGTTTGCAATGGTGAAAG 59.776 33.333 0.00 0.00 44.32 2.62
446 447 7.044181 TGAAAGTATTGTTTGCAATGGTGAAA 58.956 30.769 0.00 0.00 44.32 2.69
447 448 6.577103 TGAAAGTATTGTTTGCAATGGTGAA 58.423 32.000 0.00 0.00 44.32 3.18
448 449 6.154203 TGAAAGTATTGTTTGCAATGGTGA 57.846 33.333 0.00 0.00 44.32 4.02
449 450 6.645827 TGATGAAAGTATTGTTTGCAATGGTG 59.354 34.615 0.00 0.00 44.32 4.17
450 451 6.757237 TGATGAAAGTATTGTTTGCAATGGT 58.243 32.000 0.00 0.00 44.32 3.55
451 452 7.655236 TTGATGAAAGTATTGTTTGCAATGG 57.345 32.000 0.00 0.00 44.32 3.16
452 453 9.536558 CATTTGATGAAAGTATTGTTTGCAATG 57.463 29.630 0.00 0.00 44.32 2.82
453 454 9.491675 TCATTTGATGAAAGTATTGTTTGCAAT 57.508 25.926 0.00 0.00 41.15 3.56
454 455 8.883954 TCATTTGATGAAAGTATTGTTTGCAA 57.116 26.923 0.00 0.00 36.11 4.08
455 456 8.883954 TTCATTTGATGAAAGTATTGTTTGCA 57.116 26.923 1.10 0.00 45.57 4.08
468 469 9.054922 GGGAACATTTTCTTTTCATTTGATGAA 57.945 29.630 0.00 0.00 38.38 2.57
469 470 8.431222 AGGGAACATTTTCTTTTCATTTGATGA 58.569 29.630 0.00 0.00 32.89 2.92
470 471 8.611654 AGGGAACATTTTCTTTTCATTTGATG 57.388 30.769 0.00 0.00 31.71 3.07
515 516 9.598517 AGCAAAAAGTATTTCATTTGTCTCAAA 57.401 25.926 0.00 0.00 37.28 2.69
516 517 9.598517 AAGCAAAAAGTATTTCATTTGTCTCAA 57.401 25.926 0.00 0.00 37.28 3.02
517 518 9.598517 AAAGCAAAAAGTATTTCATTTGTCTCA 57.401 25.926 0.00 0.00 37.28 3.27
523 524 9.786105 CCACAAAAAGCAAAAAGTATTTCATTT 57.214 25.926 0.00 0.00 37.28 2.32
524 525 9.171877 TCCACAAAAAGCAAAAAGTATTTCATT 57.828 25.926 0.00 0.00 37.28 2.57
525 526 8.729805 TCCACAAAAAGCAAAAAGTATTTCAT 57.270 26.923 0.00 0.00 37.28 2.57
526 527 8.553459 TTCCACAAAAAGCAAAAAGTATTTCA 57.447 26.923 0.00 0.00 37.28 2.69
927 936 2.637382 TCTCTCTGGTTTGGTGTATGCA 59.363 45.455 0.00 0.00 0.00 3.96
930 939 3.772025 CCTCTCTCTCTGGTTTGGTGTAT 59.228 47.826 0.00 0.00 0.00 2.29
999 1022 1.522806 GCCACCCGACGAATGCATA 60.523 57.895 0.00 0.00 0.00 3.14
1316 1355 1.815421 CCAAAGCGCGAGTAGGCAT 60.815 57.895 12.10 0.00 0.00 4.40
1324 1363 2.290916 TGTAAATGAAACCAAAGCGCGA 59.709 40.909 12.10 0.00 0.00 5.87
1680 1719 4.142881 GGCCACTTTAAACTCTCGTCAATC 60.143 45.833 0.00 0.00 0.00 2.67
1696 1735 0.036164 TACACATCAAGCGGCCACTT 59.964 50.000 2.24 0.22 0.00 3.16
1707 1746 4.006989 CGGAAAAGAACCCATACACATCA 58.993 43.478 0.00 0.00 0.00 3.07
1814 1853 7.792374 TGATTTTCAGACAGATACCAATAGC 57.208 36.000 0.00 0.00 0.00 2.97
1841 1894 8.540507 TCTTACTGACATAGAGCCTAAAGAAT 57.459 34.615 0.00 0.00 0.00 2.40
1844 1897 8.200792 ACATTCTTACTGACATAGAGCCTAAAG 58.799 37.037 0.00 0.00 0.00 1.85
1847 1900 8.630917 GTTACATTCTTACTGACATAGAGCCTA 58.369 37.037 0.00 0.00 0.00 3.93
1852 1905 9.803315 GATGTGTTACATTCTTACTGACATAGA 57.197 33.333 0.00 0.00 39.27 1.98
1857 1910 7.043325 GGATCGATGTGTTACATTCTTACTGAC 60.043 40.741 0.54 0.00 39.27 3.51
2003 2083 4.854399 TCGCACAAACAAGAAATTACCAG 58.146 39.130 0.00 0.00 0.00 4.00
2320 2432 1.953686 TCCCAAACGCTCCTTGAAAAG 59.046 47.619 0.00 0.00 45.69 2.27
2428 2540 5.856986 CAGCTGATCACAATCAAAACTTGAG 59.143 40.000 8.42 0.00 43.98 3.02
2478 2591 0.608035 TTCCCATCACAAGGCGTTCC 60.608 55.000 0.00 0.00 0.00 3.62
2744 2857 2.158667 GGTTGTGGAGTTCTCAAGGGAA 60.159 50.000 2.24 0.00 0.00 3.97
2745 2858 1.420138 GGTTGTGGAGTTCTCAAGGGA 59.580 52.381 2.24 0.00 0.00 4.20
2746 2859 1.545651 GGGTTGTGGAGTTCTCAAGGG 60.546 57.143 2.24 0.00 0.00 3.95
2834 2982 4.299978 AGAGACAACAAAGAGAACGCTAC 58.700 43.478 0.00 0.00 0.00 3.58
2954 5834 5.068591 ACGTATATCCACACTAAGCATGTCA 59.931 40.000 0.00 0.00 0.00 3.58
3242 6548 8.049117 TGATCAAAATATGTAAGAGGCAAGAGT 58.951 33.333 0.00 0.00 0.00 3.24
3262 6568 5.875224 TGTGAGGAAGGTTACAATGATCAA 58.125 37.500 0.00 0.00 0.00 2.57
3423 6737 2.180946 TAGGGATCCTGCATCACACT 57.819 50.000 12.58 0.00 37.39 3.55
3578 6892 6.255596 GTGAAACTTCTATCCAGAAAACCC 57.744 41.667 0.00 0.00 40.28 4.11
4276 7593 7.504911 AGGGAATAGTATATACGCCGATGTTAT 59.495 37.037 7.23 0.00 0.00 1.89
4623 8180 1.089920 CTATGCACAGTCTGGTTGGC 58.910 55.000 4.53 3.21 0.00 4.52
4651 8222 2.148768 GTAACAGCCGCTTAAGGTGTT 58.851 47.619 13.25 13.25 38.29 3.32
4722 8308 1.696832 GAAGATGCTCGCGGTGAACC 61.697 60.000 6.13 0.00 0.00 3.62
4873 8509 1.453155 CGGCTCTTTGGCAGTTATGT 58.547 50.000 0.00 0.00 41.89 2.29
4883 8519 4.389576 GTGCACGCCGGCTCTTTG 62.390 66.667 26.68 16.60 34.04 2.77
4900 8542 9.599866 TGTTGTACTCATATTAAGACTTGGATG 57.400 33.333 0.00 0.00 0.00 3.51
4916 8576 5.606505 TGTTTGTCAGCTATGTTGTACTCA 58.393 37.500 0.00 0.00 0.00 3.41
4986 8646 4.335315 TGTGTTCAGGACAATTTGACTGAC 59.665 41.667 20.16 16.61 40.65 3.51
4987 8647 4.335315 GTGTGTTCAGGACAATTTGACTGA 59.665 41.667 17.99 17.99 40.65 3.41
4988 8648 4.336433 AGTGTGTTCAGGACAATTTGACTG 59.664 41.667 15.07 15.07 40.65 3.51
4989 8649 4.526970 AGTGTGTTCAGGACAATTTGACT 58.473 39.130 2.79 0.00 40.65 3.41
5003 8663 1.196808 CGGCCACATGTAAGTGTGTTC 59.803 52.381 2.24 0.00 46.21 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.