Multiple sequence alignment - TraesCS2A01G323600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G323600 chr2A 100.000 2878 0 0 1 2878 553760821 553757944 0.000000e+00 5315.0
1 TraesCS2A01G323600 chr2A 94.501 1273 69 1 307 1579 553726453 553725182 0.000000e+00 1962.0
2 TraesCS2A01G323600 chr2A 95.283 318 11 3 2562 2878 553717522 553717208 4.280000e-138 501.0
3 TraesCS2A01G323600 chr2A 90.164 305 27 3 1613 1914 233998352 233998048 7.470000e-106 394.0
4 TraesCS2A01G323600 chr2A 82.247 445 55 11 1474 1914 437415213 437415637 2.110000e-96 363.0
5 TraesCS2A01G323600 chr2A 86.624 314 22 4 1597 1910 553717811 553717518 2.140000e-86 329.0
6 TraesCS2A01G323600 chr2A 85.036 274 33 5 2604 2876 333368715 333368981 3.650000e-69 272.0
7 TraesCS2A01G323600 chr2A 85.130 269 30 6 2604 2869 333360776 333361037 1.700000e-67 267.0
8 TraesCS2A01G323600 chr2A 92.806 139 9 1 1643 1780 413365202 413365064 1.750000e-47 200.0
9 TraesCS2A01G323600 chr2A 87.898 157 16 3 1759 1914 589808447 589808601 6.330000e-42 182.0
10 TraesCS2A01G323600 chr2A 85.366 82 9 3 1420 1498 555902750 555902669 6.610000e-12 82.4
11 TraesCS2A01G323600 chr5A 90.232 1034 96 5 136 1166 296793513 296794544 0.000000e+00 1345.0
12 TraesCS2A01G323600 chr5A 87.832 641 73 5 142 779 280827333 280826695 0.000000e+00 747.0
13 TraesCS2A01G323600 chr5A 81.808 863 121 27 136 972 90079954 90080806 0.000000e+00 691.0
14 TraesCS2A01G323600 chr5A 91.685 445 36 1 1321 1764 296795055 296795499 1.470000e-172 616.0
15 TraesCS2A01G323600 chr5A 89.883 257 17 7 1098 1345 290043189 290043445 3.580000e-84 322.0
16 TraesCS2A01G323600 chr5A 91.237 194 14 3 1098 1289 65413668 65413860 7.910000e-66 261.0
17 TraesCS2A01G323600 chr5A 97.059 136 4 0 1 136 354884900 354884765 2.230000e-56 230.0
18 TraesCS2A01G323600 chr5A 97.059 136 4 0 1 136 499180934 499181069 2.230000e-56 230.0
19 TraesCS2A01G323600 chr5A 92.647 136 9 1 1646 1780 477918835 477918700 8.140000e-46 195.0
20 TraesCS2A01G323600 chr5A 91.367 139 11 1 1643 1780 427377745 427377883 3.790000e-44 189.0
21 TraesCS2A01G323600 chr5A 91.912 136 10 1 1646 1780 477950046 477949911 3.790000e-44 189.0
22 TraesCS2A01G323600 chr5A 90.647 139 12 1 1643 1780 403467687 403467825 1.760000e-42 183.0
23 TraesCS2A01G323600 chr5A 90.647 139 12 1 1643 1780 403479651 403479789 1.760000e-42 183.0
24 TraesCS2A01G323600 chr5A 91.089 101 9 0 1322 1422 282667493 282667593 1.390000e-28 137.0
25 TraesCS2A01G323600 chr4A 98.145 647 11 1 1917 2562 414407068 414407714 0.000000e+00 1127.0
26 TraesCS2A01G323600 chr4A 80.743 1184 175 42 142 1293 241649129 241647967 0.000000e+00 874.0
27 TraesCS2A01G323600 chr4A 81.373 1122 158 39 142 1240 241641911 241640818 0.000000e+00 867.0
28 TraesCS2A01G323600 chr4A 97.794 136 3 0 1 136 443717335 443717200 4.790000e-58 235.0
29 TraesCS2A01G323600 chr4A 97.794 136 3 0 1 136 443789338 443789203 4.790000e-58 235.0
30 TraesCS2A01G323600 chr4A 96.324 136 5 0 1 136 80966422 80966287 1.040000e-54 224.0
31 TraesCS2A01G323600 chr4A 96.324 136 5 0 1 136 197656302 197656437 1.040000e-54 224.0
32 TraesCS2A01G323600 chr4A 93.525 139 8 1 1643 1780 495147545 495147683 3.760000e-49 206.0
33 TraesCS2A01G323600 chr4A 92.806 139 9 1 1643 1780 495155280 495155418 1.750000e-47 200.0
34 TraesCS2A01G323600 chr4A 82.119 151 21 3 1768 1913 161535067 161534918 1.080000e-24 124.0
35 TraesCS2A01G323600 chr3A 97.994 648 13 0 1915 2562 482664518 482665165 0.000000e+00 1125.0
36 TraesCS2A01G323600 chr3A 97.689 649 14 1 1915 2562 696364656 696364008 0.000000e+00 1114.0
37 TraesCS2A01G323600 chr3A 87.057 649 78 6 136 779 279458533 279457886 0.000000e+00 728.0
38 TraesCS2A01G323600 chr3A 87.859 313 36 2 1604 1914 429431219 429431531 1.630000e-97 366.0
39 TraesCS2A01G323600 chr3A 91.045 201 18 0 2667 2867 379499356 379499156 3.650000e-69 272.0
40 TraesCS2A01G323600 chr3A 96.324 136 5 0 1 136 173024636 173024501 1.040000e-54 224.0
41 TraesCS2A01G323600 chr3A 88.535 157 16 2 1759 1914 402721035 402721190 3.790000e-44 189.0
42 TraesCS2A01G323600 chr3A 85.714 84 5 5 1807 1885 708998171 708998252 6.610000e-12 82.4
43 TraesCS2A01G323600 chr3A 85.333 75 10 1 1749 1822 299571244 299571318 3.080000e-10 76.8
44 TraesCS2A01G323600 chr3A 84.507 71 8 3 1428 1495 580799273 580799343 1.850000e-07 67.6
45 TraesCS2A01G323600 chr6A 97.685 648 15 0 1915 2562 35147920 35147273 0.000000e+00 1114.0
46 TraesCS2A01G323600 chr6A 97.381 649 16 1 1915 2562 33303548 33302900 0.000000e+00 1103.0
47 TraesCS2A01G323600 chr6A 97.068 648 17 1 1915 2562 614166597 614167242 0.000000e+00 1090.0
48 TraesCS2A01G323600 chr6A 91.703 229 15 4 1098 1324 317926917 317926691 5.990000e-82 315.0
49 TraesCS2A01G323600 chr6A 90.043 231 19 2 1098 1324 317919036 317918806 2.170000e-76 296.0
50 TraesCS2A01G323600 chr6A 85.560 277 27 9 2603 2876 144405360 144405094 7.850000e-71 278.0
51 TraesCS2A01G323600 chr6A 85.091 275 31 8 2604 2876 547599490 547599756 3.650000e-69 272.0
52 TraesCS2A01G323600 chr6A 85.882 255 31 5 2623 2876 547614089 547614339 1.700000e-67 267.0
53 TraesCS2A01G323600 chr6A 96.324 136 5 0 1144 1279 91218059 91218194 1.040000e-54 224.0
54 TraesCS2A01G323600 chr6A 95.522 134 6 0 1146 1279 91226308 91226441 6.250000e-52 215.0
55 TraesCS2A01G323600 chr6A 92.537 134 10 0 1146 1279 368892941 368893074 2.930000e-45 193.0
56 TraesCS2A01G323600 chr7A 97.381 649 17 0 1915 2563 53476717 53476069 0.000000e+00 1105.0
57 TraesCS2A01G323600 chr7A 95.679 648 28 0 1915 2562 721930670 721930023 0.000000e+00 1042.0
58 TraesCS2A01G323600 chr7A 82.082 826 114 27 136 936 373982823 373983639 0.000000e+00 675.0
59 TraesCS2A01G323600 chr7A 82.051 819 115 27 142 936 121988268 121987458 0.000000e+00 669.0
60 TraesCS2A01G323600 chr7A 86.738 279 27 7 871 1147 160040450 160040720 4.660000e-78 302.0
61 TraesCS2A01G323600 chr7A 97.059 136 4 0 1 136 103943359 103943224 2.230000e-56 230.0
62 TraesCS2A01G323600 chr7A 86.585 82 8 3 1420 1498 299918516 299918435 1.420000e-13 87.9
63 TraesCS2A01G323600 chr7A 85.542 83 7 5 1417 1495 272487611 272487692 6.610000e-12 82.4
64 TraesCS2A01G323600 chr7D 96.142 648 25 0 1915 2562 421832665 421832018 0.000000e+00 1059.0
65 TraesCS2A01G323600 chr1A 84.833 778 98 12 131 891 455745597 455746371 0.000000e+00 765.0
66 TraesCS2A01G323600 chr1A 84.625 774 97 14 136 891 455803018 455803787 0.000000e+00 750.0
67 TraesCS2A01G323600 chr1A 81.270 315 46 12 2566 2876 168348137 168347832 2.860000e-60 243.0
68 TraesCS2A01G323600 chr1A 88.542 192 15 6 1086 1277 482971734 482971918 2.890000e-55 226.0
69 TraesCS2A01G323600 chr1A 96.324 136 5 0 1 136 137332619 137332754 1.040000e-54 224.0
70 TraesCS2A01G323600 chr1A 90.964 166 14 1 1750 1914 357953962 357953797 3.730000e-54 222.0
71 TraesCS2A01G323600 chr1A 82.022 89 7 6 1420 1502 368400467 368400382 1.850000e-07 67.6
72 TraesCS2A01G323600 chr1D 78.435 575 89 26 594 1145 245365942 245365380 2.750000e-90 342.0
73 TraesCS2A01G323600 chr4B 78.333 540 79 29 632 1145 146027833 146028360 5.990000e-82 315.0
74 TraesCS2A01G323600 chr4B 89.157 83 9 0 997 1079 466487926 466488008 1.410000e-18 104.0
75 TraesCS2A01G323600 chr4B 87.179 78 10 0 998 1075 36384975 36385052 3.950000e-14 89.8
76 TraesCS2A01G323600 chr4B 83.529 85 8 6 1085 1167 209610553 209610473 1.110000e-09 75.0
77 TraesCS2A01G323600 chr4B 83.529 85 8 6 1085 1167 209618243 209618163 1.110000e-09 75.0
78 TraesCS2A01G323600 chr4B 97.222 36 1 0 1813 1848 115291398 115291363 8.610000e-06 62.1
79 TraesCS2A01G323600 chr2B 87.179 273 30 4 874 1145 657514721 657514989 3.600000e-79 305.0
80 TraesCS2A01G323600 chr6D 86.716 271 31 4 878 1147 230831916 230831650 2.170000e-76 296.0
81 TraesCS2A01G323600 chr6D 89.552 201 20 1 946 1145 348808369 348808169 1.320000e-63 254.0
82 TraesCS2A01G323600 chr6D 87.500 200 20 4 874 1072 334808960 334809155 2.890000e-55 226.0
83 TraesCS2A01G323600 chr6D 76.744 172 20 18 1083 1244 112240997 112241158 8.550000e-11 78.7
84 TraesCS2A01G323600 chr6D 92.683 41 2 1 1085 1125 171938015 171938054 1.110000e-04 58.4
85 TraesCS2A01G323600 chr5D 89.055 201 21 1 946 1145 159950694 159950494 6.160000e-62 248.0
86 TraesCS2A01G323600 chr5D 89.055 201 21 1 946 1145 159959127 159958927 6.160000e-62 248.0
87 TraesCS2A01G323600 chr5D 87.356 87 11 0 1769 1855 182794810 182794896 1.820000e-17 100.0
88 TraesCS2A01G323600 chr3B 80.000 315 49 13 2567 2876 187217758 187217453 1.340000e-53 220.0
89 TraesCS2A01G323600 chr3B 97.561 41 1 0 1644 1684 291947061 291947101 1.430000e-08 71.3
90 TraesCS2A01G323600 chr1B 89.209 139 14 1 1007 1145 163139959 163139822 3.810000e-39 172.0
91 TraesCS2A01G323600 chr4D 100.000 41 0 0 1039 1079 203512478 203512438 3.080000e-10 76.8
92 TraesCS2A01G323600 chr4D 100.000 41 0 0 1039 1079 203519871 203519831 3.080000e-10 76.8
93 TraesCS2A01G323600 chr3D 83.529 85 10 4 1417 1497 479722545 479722629 3.080000e-10 76.8
94 TraesCS2A01G323600 chr7B 82.353 85 7 6 1770 1848 714128023 714128105 1.850000e-07 67.6
95 TraesCS2A01G323600 chr5B 85.714 56 4 4 1450 1502 651800852 651800906 4.010000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G323600 chr2A 553757944 553760821 2877 True 5315.0 5315 100.0000 1 2878 1 chr2A.!!$R4 2877
1 TraesCS2A01G323600 chr2A 553725182 553726453 1271 True 1962.0 1962 94.5010 307 1579 1 chr2A.!!$R3 1272
2 TraesCS2A01G323600 chr2A 553717208 553717811 603 True 415.0 501 90.9535 1597 2878 2 chr2A.!!$R6 1281
3 TraesCS2A01G323600 chr5A 296793513 296795499 1986 False 980.5 1345 90.9585 136 1764 2 chr5A.!!$F9 1628
4 TraesCS2A01G323600 chr5A 280826695 280827333 638 True 747.0 747 87.8320 142 779 1 chr5A.!!$R1 637
5 TraesCS2A01G323600 chr5A 90079954 90080806 852 False 691.0 691 81.8080 136 972 1 chr5A.!!$F2 836
6 TraesCS2A01G323600 chr4A 414407068 414407714 646 False 1127.0 1127 98.1450 1917 2562 1 chr4A.!!$F2 645
7 TraesCS2A01G323600 chr4A 241647967 241649129 1162 True 874.0 874 80.7430 142 1293 1 chr4A.!!$R4 1151
8 TraesCS2A01G323600 chr4A 241640818 241641911 1093 True 867.0 867 81.3730 142 1240 1 chr4A.!!$R3 1098
9 TraesCS2A01G323600 chr3A 482664518 482665165 647 False 1125.0 1125 97.9940 1915 2562 1 chr3A.!!$F4 647
10 TraesCS2A01G323600 chr3A 696364008 696364656 648 True 1114.0 1114 97.6890 1915 2562 1 chr3A.!!$R4 647
11 TraesCS2A01G323600 chr3A 279457886 279458533 647 True 728.0 728 87.0570 136 779 1 chr3A.!!$R2 643
12 TraesCS2A01G323600 chr6A 35147273 35147920 647 True 1114.0 1114 97.6850 1915 2562 1 chr6A.!!$R2 647
13 TraesCS2A01G323600 chr6A 33302900 33303548 648 True 1103.0 1103 97.3810 1915 2562 1 chr6A.!!$R1 647
14 TraesCS2A01G323600 chr6A 614166597 614167242 645 False 1090.0 1090 97.0680 1915 2562 1 chr6A.!!$F6 647
15 TraesCS2A01G323600 chr7A 53476069 53476717 648 True 1105.0 1105 97.3810 1915 2563 1 chr7A.!!$R1 648
16 TraesCS2A01G323600 chr7A 721930023 721930670 647 True 1042.0 1042 95.6790 1915 2562 1 chr7A.!!$R5 647
17 TraesCS2A01G323600 chr7A 373982823 373983639 816 False 675.0 675 82.0820 136 936 1 chr7A.!!$F3 800
18 TraesCS2A01G323600 chr7A 121987458 121988268 810 True 669.0 669 82.0510 142 936 1 chr7A.!!$R3 794
19 TraesCS2A01G323600 chr7D 421832018 421832665 647 True 1059.0 1059 96.1420 1915 2562 1 chr7D.!!$R1 647
20 TraesCS2A01G323600 chr1A 455745597 455746371 774 False 765.0 765 84.8330 131 891 1 chr1A.!!$F2 760
21 TraesCS2A01G323600 chr1A 455803018 455803787 769 False 750.0 750 84.6250 136 891 1 chr1A.!!$F3 755
22 TraesCS2A01G323600 chr1D 245365380 245365942 562 True 342.0 342 78.4350 594 1145 1 chr1D.!!$R1 551
23 TraesCS2A01G323600 chr4B 146027833 146028360 527 False 315.0 315 78.3330 632 1145 1 chr4B.!!$F2 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.040646 TCAGGGCCTAACTCTTCGGA 59.959 55.0 5.28 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 2356 0.107214 TTTTCATCCCTAGCGCTGGG 60.107 55.0 31.34 31.34 45.9 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.586648 TCCTTTTCTCTTTCAGGGCC 57.413 50.000 0.00 0.00 0.00 5.80
21 22 2.065799 TCCTTTTCTCTTTCAGGGCCT 58.934 47.619 0.00 0.00 0.00 5.19
22 23 3.256704 TCCTTTTCTCTTTCAGGGCCTA 58.743 45.455 5.28 0.00 0.00 3.93
23 24 3.655777 TCCTTTTCTCTTTCAGGGCCTAA 59.344 43.478 5.28 0.00 0.00 2.69
24 25 3.759086 CCTTTTCTCTTTCAGGGCCTAAC 59.241 47.826 5.28 0.00 0.00 2.34
25 26 4.507512 CCTTTTCTCTTTCAGGGCCTAACT 60.508 45.833 5.28 0.00 0.00 2.24
26 27 3.983044 TTCTCTTTCAGGGCCTAACTC 57.017 47.619 5.28 0.00 0.00 3.01
27 28 3.191888 TCTCTTTCAGGGCCTAACTCT 57.808 47.619 5.28 0.00 0.00 3.24
28 29 3.521727 TCTCTTTCAGGGCCTAACTCTT 58.478 45.455 5.28 0.00 0.00 2.85
29 30 3.515901 TCTCTTTCAGGGCCTAACTCTTC 59.484 47.826 5.28 0.00 0.00 2.87
30 31 2.233922 TCTTTCAGGGCCTAACTCTTCG 59.766 50.000 5.28 0.00 0.00 3.79
31 32 0.902531 TTCAGGGCCTAACTCTTCGG 59.097 55.000 5.28 0.00 0.00 4.30
32 33 0.040646 TCAGGGCCTAACTCTTCGGA 59.959 55.000 5.28 0.00 0.00 4.55
33 34 0.902531 CAGGGCCTAACTCTTCGGAA 59.097 55.000 5.28 0.00 0.00 4.30
34 35 1.134670 CAGGGCCTAACTCTTCGGAAG 60.135 57.143 5.28 11.54 0.00 3.46
35 36 0.178301 GGGCCTAACTCTTCGGAAGG 59.822 60.000 17.19 10.55 0.00 3.46
36 37 3.067074 GCCTAACTCTTCGGAAGGC 57.933 57.895 17.19 9.00 45.37 4.35
37 38 0.462225 GCCTAACTCTTCGGAAGGCC 60.462 60.000 17.19 0.00 45.69 5.19
38 39 1.196012 CCTAACTCTTCGGAAGGCCT 58.804 55.000 17.19 0.00 0.00 5.19
39 40 1.555533 CCTAACTCTTCGGAAGGCCTT 59.444 52.381 20.65 20.65 0.00 4.35
40 41 2.027100 CCTAACTCTTCGGAAGGCCTTT 60.027 50.000 21.54 2.85 0.00 3.11
41 42 2.186532 AACTCTTCGGAAGGCCTTTC 57.813 50.000 21.54 17.95 34.93 2.62
61 62 3.961576 GGCAGTATGACTACCGGAC 57.038 57.895 9.46 0.00 44.72 4.79
62 63 1.108776 GGCAGTATGACTACCGGACA 58.891 55.000 9.46 2.86 44.72 4.02
63 64 1.202382 GGCAGTATGACTACCGGACAC 60.202 57.143 9.46 0.00 44.72 3.67
64 65 1.475280 GCAGTATGACTACCGGACACA 59.525 52.381 9.46 2.85 39.69 3.72
65 66 2.100916 GCAGTATGACTACCGGACACAT 59.899 50.000 9.46 10.68 39.69 3.21
66 67 3.430374 GCAGTATGACTACCGGACACATT 60.430 47.826 9.46 0.00 39.69 2.71
67 68 4.360563 CAGTATGACTACCGGACACATTC 58.639 47.826 9.46 6.35 39.69 2.67
68 69 2.981859 ATGACTACCGGACACATTCC 57.018 50.000 9.46 0.00 41.75 3.01
69 70 1.634960 TGACTACCGGACACATTCCA 58.365 50.000 9.46 0.00 46.29 3.53
70 71 1.548719 TGACTACCGGACACATTCCAG 59.451 52.381 9.46 0.00 46.29 3.86
71 72 1.822990 GACTACCGGACACATTCCAGA 59.177 52.381 9.46 0.00 46.29 3.86
72 73 2.232941 GACTACCGGACACATTCCAGAA 59.767 50.000 9.46 0.00 46.29 3.02
73 74 2.233922 ACTACCGGACACATTCCAGAAG 59.766 50.000 9.46 0.00 46.29 2.85
74 75 0.321653 ACCGGACACATTCCAGAAGC 60.322 55.000 9.46 0.00 46.29 3.86
75 76 0.321564 CCGGACACATTCCAGAAGCA 60.322 55.000 0.00 0.00 46.29 3.91
76 77 1.522668 CGGACACATTCCAGAAGCAA 58.477 50.000 0.00 0.00 46.29 3.91
77 78 1.197721 CGGACACATTCCAGAAGCAAC 59.802 52.381 0.00 0.00 46.29 4.17
78 79 2.229792 GGACACATTCCAGAAGCAACA 58.770 47.619 0.00 0.00 45.10 3.33
79 80 2.622942 GGACACATTCCAGAAGCAACAA 59.377 45.455 0.00 0.00 45.10 2.83
80 81 3.550842 GGACACATTCCAGAAGCAACAAC 60.551 47.826 0.00 0.00 45.10 3.32
81 82 2.362077 ACACATTCCAGAAGCAACAACC 59.638 45.455 0.00 0.00 0.00 3.77
82 83 1.608590 ACATTCCAGAAGCAACAACCG 59.391 47.619 0.00 0.00 0.00 4.44
83 84 1.879380 CATTCCAGAAGCAACAACCGA 59.121 47.619 0.00 0.00 0.00 4.69
84 85 2.270352 TTCCAGAAGCAACAACCGAT 57.730 45.000 0.00 0.00 0.00 4.18
85 86 1.522668 TCCAGAAGCAACAACCGATG 58.477 50.000 0.00 0.00 0.00 3.84
86 87 0.109597 CCAGAAGCAACAACCGATGC 60.110 55.000 0.00 0.00 41.02 3.91
87 88 0.453282 CAGAAGCAACAACCGATGCG 60.453 55.000 0.00 0.00 45.06 4.73
97 98 2.821366 CCGATGCGGCAAGAAGCT 60.821 61.111 6.82 0.00 41.17 3.74
98 99 1.521457 CCGATGCGGCAAGAAGCTA 60.521 57.895 6.82 0.00 41.17 3.32
99 100 1.089481 CCGATGCGGCAAGAAGCTAA 61.089 55.000 6.82 0.00 41.17 3.09
100 101 0.302890 CGATGCGGCAAGAAGCTAAG 59.697 55.000 6.82 0.00 44.79 2.18
101 102 1.656652 GATGCGGCAAGAAGCTAAGA 58.343 50.000 6.82 0.00 44.79 2.10
102 103 2.216898 GATGCGGCAAGAAGCTAAGAT 58.783 47.619 6.82 0.00 44.79 2.40
103 104 1.372582 TGCGGCAAGAAGCTAAGATG 58.627 50.000 0.00 0.00 44.79 2.90
104 105 1.066215 TGCGGCAAGAAGCTAAGATGA 60.066 47.619 0.00 0.00 44.79 2.92
105 106 2.009774 GCGGCAAGAAGCTAAGATGAA 58.990 47.619 0.00 0.00 44.79 2.57
106 107 2.223135 GCGGCAAGAAGCTAAGATGAAC 60.223 50.000 0.00 0.00 44.79 3.18
107 108 3.002791 CGGCAAGAAGCTAAGATGAACA 58.997 45.455 0.00 0.00 44.79 3.18
108 109 3.181516 CGGCAAGAAGCTAAGATGAACAC 60.182 47.826 0.00 0.00 44.79 3.32
109 110 3.181516 GGCAAGAAGCTAAGATGAACACG 60.182 47.826 0.00 0.00 44.79 4.49
110 111 3.181516 GCAAGAAGCTAAGATGAACACGG 60.182 47.826 0.00 0.00 41.15 4.94
111 112 3.252974 AGAAGCTAAGATGAACACGGG 57.747 47.619 0.00 0.00 0.00 5.28
112 113 2.832129 AGAAGCTAAGATGAACACGGGA 59.168 45.455 0.00 0.00 0.00 5.14
113 114 3.260884 AGAAGCTAAGATGAACACGGGAA 59.739 43.478 0.00 0.00 0.00 3.97
114 115 2.973945 AGCTAAGATGAACACGGGAAC 58.026 47.619 0.00 0.00 0.00 3.62
154 155 1.227176 GTAATGCCCCGAGACCGAC 60.227 63.158 0.00 0.00 38.22 4.79
192 194 6.457355 TCTAGTTATTCGTTGTTGTGCCTTA 58.543 36.000 0.00 0.00 0.00 2.69
200 202 4.517075 TCGTTGTTGTGCCTTATCATTTGA 59.483 37.500 0.00 0.00 0.00 2.69
210 212 5.476254 TGCCTTATCATTTGATTGTGTGTCA 59.524 36.000 0.00 0.00 36.05 3.58
211 213 6.153170 TGCCTTATCATTTGATTGTGTGTCAT 59.847 34.615 0.00 0.00 36.05 3.06
244 247 4.142049 TGTCATCATGTGCATTGCATCATT 60.142 37.500 15.49 4.07 41.91 2.57
303 307 1.539496 CCTTCCGTTGTCCGTTCTGAA 60.539 52.381 0.00 0.00 33.66 3.02
611 632 1.208165 CCCAGCCTACCCCTCTTTGT 61.208 60.000 0.00 0.00 0.00 2.83
630 652 2.893398 CAGTGCGTAGACCCCTCC 59.107 66.667 0.00 0.00 0.00 4.30
815 855 5.836024 TTCCATATATAAGACCACCACCC 57.164 43.478 0.00 0.00 0.00 4.61
881 965 1.600916 GCCGCATTATCTCCCACCC 60.601 63.158 0.00 0.00 0.00 4.61
1177 1270 3.691342 CCGTCTCGCACCTTCCCA 61.691 66.667 0.00 0.00 0.00 4.37
1194 1287 1.406614 CCCATGCTCTTTTCTCGCTCT 60.407 52.381 0.00 0.00 0.00 4.09
1225 1318 0.545548 AACTCTCCCTGACCTCACCC 60.546 60.000 0.00 0.00 0.00 4.61
1329 1778 2.527624 AGCACCAGCAGGGAGACA 60.528 61.111 0.00 0.00 45.49 3.41
1403 1852 3.699134 GAACCGGCCAGATCCCACC 62.699 68.421 0.00 0.00 0.00 4.61
1404 1853 4.741239 ACCGGCCAGATCCCACCT 62.741 66.667 0.00 0.00 0.00 4.00
1445 1894 2.669569 GAGCTTGCGCCAAGTCCA 60.670 61.111 4.18 0.00 42.77 4.02
1448 1897 2.334946 GCTTGCGCCAAGTCCATCA 61.335 57.895 4.18 0.00 42.77 3.07
1500 1949 4.680237 CTGCTCACCCGCGTGGAA 62.680 66.667 18.79 0.05 40.65 3.53
1557 2006 3.528370 ATCTTCGCTCCGTCCGGG 61.528 66.667 0.00 0.00 35.59 5.73
1574 2023 3.459063 GCGCCTCCTACCGTCCTT 61.459 66.667 0.00 0.00 0.00 3.36
1579 2028 0.964358 CCTCCTACCGTCCTTGTCGT 60.964 60.000 0.00 0.00 0.00 4.34
1580 2029 0.450983 CTCCTACCGTCCTTGTCGTC 59.549 60.000 0.00 0.00 0.00 4.20
1595 2044 0.033920 TCGTCAAGACACTGCTGCAT 59.966 50.000 1.31 0.00 0.00 3.96
1606 2055 2.356278 GCTGCATCTCCAACCCCA 59.644 61.111 0.00 0.00 0.00 4.96
1673 2122 3.650950 ACCATGGTGCTCGGCCTT 61.651 61.111 18.99 0.00 0.00 4.35
1688 2137 2.032528 CTTGTGCAGCTTCGGGGA 59.967 61.111 0.00 0.00 0.00 4.81
1712 2161 2.026879 CGCCGCCTAGAGCTTCTC 59.973 66.667 0.00 0.00 40.39 2.87
1767 2217 3.646715 CCCCGCCAAGTCCCTCAA 61.647 66.667 0.00 0.00 0.00 3.02
1768 2218 2.045926 CCCGCCAAGTCCCTCAAG 60.046 66.667 0.00 0.00 0.00 3.02
1769 2219 2.747855 CCGCCAAGTCCCTCAAGC 60.748 66.667 0.00 0.00 0.00 4.01
1770 2220 2.747855 CGCCAAGTCCCTCAAGCC 60.748 66.667 0.00 0.00 0.00 4.35
1771 2221 2.747855 GCCAAGTCCCTCAAGCCG 60.748 66.667 0.00 0.00 0.00 5.52
1772 2222 2.747855 CCAAGTCCCTCAAGCCGC 60.748 66.667 0.00 0.00 0.00 6.53
1773 2223 2.747855 CAAGTCCCTCAAGCCGCC 60.748 66.667 0.00 0.00 0.00 6.13
1774 2224 4.394712 AAGTCCCTCAAGCCGCCG 62.395 66.667 0.00 0.00 0.00 6.46
1827 2277 1.086634 GGTGTCCTCTGCATCGAAGC 61.087 60.000 5.52 5.52 0.00 3.86
1873 2323 0.673985 ATCCTTGTATCGCTAGCGCA 59.326 50.000 31.82 20.96 39.59 6.09
1898 2348 3.064987 GCGCCCTGCTTCTCGAGTA 62.065 63.158 13.13 1.10 41.73 2.59
1903 2353 0.749649 CCTGCTTCTCGAGTAGCCAT 59.250 55.000 32.75 0.00 37.61 4.40
1905 2355 0.461548 TGCTTCTCGAGTAGCCATGG 59.538 55.000 32.75 7.63 37.61 3.66
1906 2356 0.878086 GCTTCTCGAGTAGCCATGGC 60.878 60.000 30.12 30.12 42.33 4.40
1907 2357 0.249657 CTTCTCGAGTAGCCATGGCC 60.250 60.000 33.14 18.87 43.17 5.36
1908 2358 1.686325 TTCTCGAGTAGCCATGGCCC 61.686 60.000 33.14 23.23 43.17 5.80
1909 2359 2.364973 TCGAGTAGCCATGGCCCA 60.365 61.111 33.14 18.86 43.17 5.36
1910 2360 2.109799 CGAGTAGCCATGGCCCAG 59.890 66.667 33.14 16.12 43.17 4.45
1911 2361 2.203266 GAGTAGCCATGGCCCAGC 60.203 66.667 33.14 19.51 43.17 4.85
1912 2362 4.181010 AGTAGCCATGGCCCAGCG 62.181 66.667 33.14 0.00 43.17 5.18
2489 2941 3.307242 CGTTTTGCAAATTTCCGTTTCCA 59.693 39.130 13.65 0.00 0.00 3.53
2566 3018 3.825328 CTCCATTTTCATCCCTACCCAG 58.175 50.000 0.00 0.00 0.00 4.45
2568 3020 1.949525 CATTTTCATCCCTACCCAGCG 59.050 52.381 0.00 0.00 0.00 5.18
2621 3073 3.698765 CCCATGGTGAGGCAAACC 58.301 61.111 11.73 1.88 38.26 3.27
2661 3113 1.755200 TTCCCTCCTTACTTTGGCCT 58.245 50.000 3.32 0.00 0.00 5.19
2662 3114 0.991920 TCCCTCCTTACTTTGGCCTG 59.008 55.000 3.32 0.00 0.00 4.85
2671 3123 2.907458 ACTTTGGCCTGGCTAGATTT 57.093 45.000 19.68 0.00 0.00 2.17
2777 3230 8.946935 CAACATGCATATAATAACTCACAAACG 58.053 33.333 0.00 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.447047 AGGCCCTGAAAGAGAAAAGGAA 59.553 45.455 0.00 0.00 34.07 3.36
1 2 2.065799 AGGCCCTGAAAGAGAAAAGGA 58.934 47.619 0.00 0.00 34.07 3.36
2 3 2.593925 AGGCCCTGAAAGAGAAAAGG 57.406 50.000 0.00 0.00 34.07 3.11
3 4 4.657013 AGTTAGGCCCTGAAAGAGAAAAG 58.343 43.478 0.00 0.00 34.07 2.27
4 5 4.351111 AGAGTTAGGCCCTGAAAGAGAAAA 59.649 41.667 0.00 0.00 34.07 2.29
5 6 3.910627 AGAGTTAGGCCCTGAAAGAGAAA 59.089 43.478 0.00 0.00 34.07 2.52
6 7 3.521727 AGAGTTAGGCCCTGAAAGAGAA 58.478 45.455 0.00 0.00 34.07 2.87
7 8 3.191888 AGAGTTAGGCCCTGAAAGAGA 57.808 47.619 0.00 0.00 34.07 3.10
8 9 3.677424 CGAAGAGTTAGGCCCTGAAAGAG 60.677 52.174 0.00 0.00 34.07 2.85
9 10 2.233922 CGAAGAGTTAGGCCCTGAAAGA 59.766 50.000 0.00 0.00 34.07 2.52
10 11 2.622436 CGAAGAGTTAGGCCCTGAAAG 58.378 52.381 0.00 0.00 0.00 2.62
11 12 1.278127 CCGAAGAGTTAGGCCCTGAAA 59.722 52.381 0.00 0.00 0.00 2.69
12 13 0.902531 CCGAAGAGTTAGGCCCTGAA 59.097 55.000 0.00 0.00 0.00 3.02
13 14 0.040646 TCCGAAGAGTTAGGCCCTGA 59.959 55.000 0.00 0.00 0.00 3.86
14 15 0.902531 TTCCGAAGAGTTAGGCCCTG 59.097 55.000 0.00 0.00 0.00 4.45
15 16 1.196012 CTTCCGAAGAGTTAGGCCCT 58.804 55.000 0.00 0.00 0.00 5.19
16 17 0.178301 CCTTCCGAAGAGTTAGGCCC 59.822 60.000 9.87 0.00 0.00 5.80
17 18 0.462225 GCCTTCCGAAGAGTTAGGCC 60.462 60.000 9.87 0.00 44.38 5.19
18 19 3.067074 GCCTTCCGAAGAGTTAGGC 57.933 57.895 9.87 0.05 43.96 3.93
19 20 1.196012 AGGCCTTCCGAAGAGTTAGG 58.804 55.000 9.87 0.00 37.47 2.69
20 21 3.263261 GAAAGGCCTTCCGAAGAGTTAG 58.737 50.000 20.79 0.00 37.47 2.34
21 22 2.027469 GGAAAGGCCTTCCGAAGAGTTA 60.027 50.000 20.79 0.00 44.38 2.24
22 23 1.271434 GGAAAGGCCTTCCGAAGAGTT 60.271 52.381 20.79 0.00 44.38 3.01
23 24 0.325272 GGAAAGGCCTTCCGAAGAGT 59.675 55.000 20.79 0.00 44.38 3.24
24 25 3.160872 GGAAAGGCCTTCCGAAGAG 57.839 57.895 20.79 1.41 44.38 2.85
36 37 2.483188 GGTAGTCATACTGCCGGAAAGG 60.483 54.545 5.05 0.00 41.04 3.11
37 38 2.822764 GGTAGTCATACTGCCGGAAAG 58.177 52.381 5.05 3.88 41.04 2.62
38 39 2.973694 GGTAGTCATACTGCCGGAAA 57.026 50.000 5.05 0.00 41.04 3.13
43 44 1.108776 TGTCCGGTAGTCATACTGCC 58.891 55.000 0.00 4.28 45.96 4.85
44 45 1.475280 TGTGTCCGGTAGTCATACTGC 59.525 52.381 0.00 0.00 37.01 4.40
45 46 4.360563 GAATGTGTCCGGTAGTCATACTG 58.639 47.826 0.00 0.00 37.92 2.74
46 47 3.383825 GGAATGTGTCCGGTAGTCATACT 59.616 47.826 0.00 0.00 36.40 2.12
47 48 3.714391 GGAATGTGTCCGGTAGTCATAC 58.286 50.000 0.00 0.00 36.40 2.39
49 50 2.981859 GGAATGTGTCCGGTAGTCAT 57.018 50.000 0.00 0.00 36.40 3.06
59 60 3.550842 GGTTGTTGCTTCTGGAATGTGTC 60.551 47.826 0.00 0.00 0.00 3.67
60 61 2.362077 GGTTGTTGCTTCTGGAATGTGT 59.638 45.455 0.00 0.00 0.00 3.72
61 62 2.605338 CGGTTGTTGCTTCTGGAATGTG 60.605 50.000 0.00 0.00 0.00 3.21
62 63 1.608590 CGGTTGTTGCTTCTGGAATGT 59.391 47.619 0.00 0.00 0.00 2.71
63 64 1.879380 TCGGTTGTTGCTTCTGGAATG 59.121 47.619 0.00 0.00 0.00 2.67
64 65 2.270352 TCGGTTGTTGCTTCTGGAAT 57.730 45.000 0.00 0.00 0.00 3.01
65 66 1.879380 CATCGGTTGTTGCTTCTGGAA 59.121 47.619 0.00 0.00 0.00 3.53
66 67 1.522668 CATCGGTTGTTGCTTCTGGA 58.477 50.000 0.00 0.00 0.00 3.86
67 68 0.109597 GCATCGGTTGTTGCTTCTGG 60.110 55.000 0.00 0.00 37.73 3.86
68 69 0.453282 CGCATCGGTTGTTGCTTCTG 60.453 55.000 0.00 0.00 38.41 3.02
69 70 1.577328 CCGCATCGGTTGTTGCTTCT 61.577 55.000 0.00 0.00 42.73 2.85
70 71 1.154225 CCGCATCGGTTGTTGCTTC 60.154 57.895 0.00 0.00 42.73 3.86
71 72 2.953821 CCGCATCGGTTGTTGCTT 59.046 55.556 0.00 0.00 42.73 3.91
81 82 0.302890 CTTAGCTTCTTGCCGCATCG 59.697 55.000 0.00 0.00 44.23 3.84
82 83 1.656652 TCTTAGCTTCTTGCCGCATC 58.343 50.000 0.00 0.00 44.23 3.91
83 84 1.945394 CATCTTAGCTTCTTGCCGCAT 59.055 47.619 0.00 0.00 44.23 4.73
84 85 1.066215 TCATCTTAGCTTCTTGCCGCA 60.066 47.619 0.00 0.00 44.23 5.69
85 86 1.656652 TCATCTTAGCTTCTTGCCGC 58.343 50.000 0.00 0.00 44.23 6.53
86 87 3.002791 TGTTCATCTTAGCTTCTTGCCG 58.997 45.455 0.00 0.00 44.23 5.69
87 88 3.181516 CGTGTTCATCTTAGCTTCTTGCC 60.182 47.826 0.00 0.00 44.23 4.52
88 89 3.181516 CCGTGTTCATCTTAGCTTCTTGC 60.182 47.826 0.00 0.00 43.29 4.01
89 90 3.372206 CCCGTGTTCATCTTAGCTTCTTG 59.628 47.826 0.00 0.00 0.00 3.02
90 91 3.260884 TCCCGTGTTCATCTTAGCTTCTT 59.739 43.478 0.00 0.00 0.00 2.52
91 92 2.832129 TCCCGTGTTCATCTTAGCTTCT 59.168 45.455 0.00 0.00 0.00 2.85
92 93 3.247006 TCCCGTGTTCATCTTAGCTTC 57.753 47.619 0.00 0.00 0.00 3.86
93 94 3.335579 GTTCCCGTGTTCATCTTAGCTT 58.664 45.455 0.00 0.00 0.00 3.74
94 95 2.354805 GGTTCCCGTGTTCATCTTAGCT 60.355 50.000 0.00 0.00 0.00 3.32
95 96 2.007608 GGTTCCCGTGTTCATCTTAGC 58.992 52.381 0.00 0.00 0.00 3.09
96 97 2.268298 CGGTTCCCGTGTTCATCTTAG 58.732 52.381 0.00 0.00 42.73 2.18
97 98 2.373540 CGGTTCCCGTGTTCATCTTA 57.626 50.000 0.00 0.00 42.73 2.10
98 99 3.226884 CGGTTCCCGTGTTCATCTT 57.773 52.632 0.00 0.00 42.73 2.40
109 110 4.717313 GACCACCTGGCGGTTCCC 62.717 72.222 8.00 0.00 42.13 3.97
110 111 3.607370 GAGACCACCTGGCGGTTCC 62.607 68.421 8.00 0.00 42.13 3.62
111 112 1.255667 TAGAGACCACCTGGCGGTTC 61.256 60.000 8.00 7.72 42.13 3.62
112 113 1.229082 TAGAGACCACCTGGCGGTT 60.229 57.895 8.00 0.00 42.13 4.44
114 115 0.395311 TACTAGAGACCACCTGGCGG 60.395 60.000 0.00 0.00 39.32 6.13
115 116 1.471119 TTACTAGAGACCACCTGGCG 58.529 55.000 0.00 0.00 39.32 5.69
116 117 2.766828 ACATTACTAGAGACCACCTGGC 59.233 50.000 0.00 0.00 39.32 4.85
117 118 6.516718 CATTACATTACTAGAGACCACCTGG 58.483 44.000 0.00 0.00 42.17 4.45
118 119 5.986135 GCATTACATTACTAGAGACCACCTG 59.014 44.000 0.00 0.00 0.00 4.00
119 120 5.070580 GGCATTACATTACTAGAGACCACCT 59.929 44.000 0.00 0.00 0.00 4.00
120 121 5.298347 GGCATTACATTACTAGAGACCACC 58.702 45.833 0.00 0.00 0.00 4.61
121 122 5.298347 GGGCATTACATTACTAGAGACCAC 58.702 45.833 0.00 0.00 0.00 4.16
122 123 4.347000 GGGGCATTACATTACTAGAGACCA 59.653 45.833 0.00 0.00 0.00 4.02
123 124 4.560919 CGGGGCATTACATTACTAGAGACC 60.561 50.000 0.00 0.00 0.00 3.85
124 125 4.280174 TCGGGGCATTACATTACTAGAGAC 59.720 45.833 0.00 0.00 0.00 3.36
125 126 4.476297 TCGGGGCATTACATTACTAGAGA 58.524 43.478 0.00 0.00 0.00 3.10
126 127 4.523173 TCTCGGGGCATTACATTACTAGAG 59.477 45.833 0.00 0.00 0.00 2.43
127 128 4.280174 GTCTCGGGGCATTACATTACTAGA 59.720 45.833 0.00 0.00 0.00 2.43
128 129 4.557205 GTCTCGGGGCATTACATTACTAG 58.443 47.826 0.00 0.00 0.00 2.57
129 130 3.322828 GGTCTCGGGGCATTACATTACTA 59.677 47.826 0.00 0.00 0.00 1.82
154 155 1.517257 CTAGAAGACACCTGGCGCG 60.517 63.158 0.00 0.00 0.00 6.86
200 202 6.885918 TGACATGGAAAGATATGACACACAAT 59.114 34.615 0.00 0.00 0.00 2.71
244 247 4.022416 ACGGATGCAAGTTTTGAAAGCATA 60.022 37.500 2.88 0.00 45.08 3.14
248 251 3.308530 GGACGGATGCAAGTTTTGAAAG 58.691 45.455 0.00 0.00 0.00 2.62
303 307 2.421739 GTGCGAGTGTGACTGGGT 59.578 61.111 0.00 0.00 0.00 4.51
435 442 0.806102 ACGAACTCCGAATGCGATGG 60.806 55.000 0.00 0.00 41.76 3.51
523 534 3.726517 CAGCCCGGCGACTGTTTG 61.727 66.667 9.30 0.00 0.00 2.93
611 632 2.603473 AGGGGTCTACGCACTGCA 60.603 61.111 1.11 0.00 33.80 4.41
630 652 2.470286 GAAGTTTCAGACGCGCGG 59.530 61.111 35.22 16.94 0.00 6.46
670 693 0.179092 GTTCCGGACCCATCGGTTAG 60.179 60.000 1.83 0.00 44.88 2.34
815 855 1.341080 AGGGTTGGCTTGATTTGGTG 58.659 50.000 0.00 0.00 0.00 4.17
1177 1270 3.195396 AGAGAAGAGCGAGAAAAGAGCAT 59.805 43.478 0.00 0.00 0.00 3.79
1194 1287 1.546961 GGAGAGTTCACGGGAGAGAA 58.453 55.000 0.00 0.00 37.11 2.87
1225 1318 5.010516 TGTCTGTGAAAGAGAAAGAGAGAGG 59.989 44.000 0.00 0.00 38.31 3.69
1306 1682 1.303888 CCCTGCTGGTGCTGTTCAT 60.304 57.895 9.00 0.00 40.48 2.57
1387 1836 4.741239 AGGTGGGATCTGGCCGGT 62.741 66.667 12.43 0.00 0.00 5.28
1445 1894 1.459455 CCCGAGCAGAGGACGATGAT 61.459 60.000 0.00 0.00 0.00 2.45
1448 1897 1.379977 TTCCCGAGCAGAGGACGAT 60.380 57.895 0.00 0.00 0.00 3.73
1500 1949 4.148825 GATCCAGCGGCCAGTCGT 62.149 66.667 2.24 0.00 0.00 4.34
1536 1985 1.218316 GGACGGAGCGAAGATGGTT 59.782 57.895 0.00 0.00 0.00 3.67
1557 2006 3.459063 AAGGACGGTAGGAGGCGC 61.459 66.667 0.00 0.00 0.00 6.53
1579 2028 1.338484 GGAGATGCAGCAGTGTCTTGA 60.338 52.381 4.07 0.00 0.00 3.02
1580 2029 1.085091 GGAGATGCAGCAGTGTCTTG 58.915 55.000 4.07 0.00 0.00 3.02
1584 2033 0.607489 GGTTGGAGATGCAGCAGTGT 60.607 55.000 4.07 0.00 0.00 3.55
1585 2034 1.310933 GGGTTGGAGATGCAGCAGTG 61.311 60.000 4.07 0.00 0.00 3.66
1673 2122 3.535629 CTGTCCCCGAAGCTGCACA 62.536 63.158 1.02 0.00 0.00 4.57
1785 2235 4.478371 TGCAGGAGGCCGCATCTG 62.478 66.667 9.31 8.62 43.89 2.90
1786 2236 4.479993 GTGCAGGAGGCCGCATCT 62.480 66.667 9.31 0.00 43.89 2.90
1804 2254 1.812922 GATGCAGAGGACACCAGCG 60.813 63.158 0.00 0.00 0.00 5.18
1807 2257 0.247460 CTTCGATGCAGAGGACACCA 59.753 55.000 0.00 0.00 0.00 4.17
1810 2260 1.974543 TGCTTCGATGCAGAGGACA 59.025 52.632 20.86 0.00 38.12 4.02
1827 2277 0.108898 CTCGTCCTCCTCTGCAACTG 60.109 60.000 0.00 0.00 0.00 3.16
1905 2355 2.608970 TTTCATCCCTAGCGCTGGGC 62.609 60.000 32.70 8.86 44.23 5.36
1906 2356 0.107214 TTTTCATCCCTAGCGCTGGG 60.107 55.000 31.34 31.34 45.90 4.45
1907 2357 1.017387 GTTTTCATCCCTAGCGCTGG 58.983 55.000 22.90 18.68 0.00 4.85
1908 2358 0.652592 CGTTTTCATCCCTAGCGCTG 59.347 55.000 22.90 10.13 0.00 5.18
1909 2359 0.462047 CCGTTTTCATCCCTAGCGCT 60.462 55.000 17.26 17.26 0.00 5.92
1910 2360 0.461339 TCCGTTTTCATCCCTAGCGC 60.461 55.000 0.00 0.00 0.00 5.92
1911 2361 1.571919 CTCCGTTTTCATCCCTAGCG 58.428 55.000 0.00 0.00 0.00 4.26
1912 2362 1.300481 GCTCCGTTTTCATCCCTAGC 58.700 55.000 0.00 0.00 0.00 3.42
1913 2363 1.571919 CGCTCCGTTTTCATCCCTAG 58.428 55.000 0.00 0.00 0.00 3.02
2089 2540 4.652679 AGGGGTTTTTAAGTTCCGATCT 57.347 40.909 0.00 0.00 0.00 2.75
2220 2671 4.442706 CTTGACCCTATACGCAATTGTCT 58.557 43.478 7.40 0.00 0.00 3.41
2489 2941 8.884124 TGGAAACAGAGAGGAAATATGAAAAT 57.116 30.769 0.00 0.00 35.01 1.82
2643 3095 0.991920 CAGGCCAAAGTAAGGAGGGA 59.008 55.000 5.01 0.00 0.00 4.20
2771 3224 6.682746 TGTTTTAATATGATGCACCGTTTGT 58.317 32.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.