Multiple sequence alignment - TraesCS2A01G323200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G323200 chr2A 100.000 3805 0 0 1 3805 553281167 553277363 0.000000e+00 7027
1 TraesCS2A01G323200 chr2A 84.763 991 113 24 1163 2146 552840024 552839065 0.000000e+00 959
2 TraesCS2A01G323200 chr2A 97.740 177 4 0 1 177 342921126 342921302 4.780000e-79 305
3 TraesCS2A01G323200 chr2A 97.714 175 4 0 1 175 320701973 320701799 6.180000e-78 302
4 TraesCS2A01G323200 chr2A 97.143 175 5 0 1 175 189264007 189264181 2.870000e-76 296
5 TraesCS2A01G323200 chr2A 90.000 190 18 1 2488 2676 552838637 552838448 1.060000e-60 244
6 TraesCS2A01G323200 chr2D 92.429 2734 124 47 179 2893 433862333 433865002 0.000000e+00 3825
7 TraesCS2A01G323200 chr2D 84.515 1001 115 25 1153 2146 434138489 434139456 0.000000e+00 953
8 TraesCS2A01G323200 chr2D 84.333 517 28 14 2973 3453 433864992 433865491 1.250000e-124 457
9 TraesCS2A01G323200 chr2D 88.947 190 20 1 2488 2676 434139888 434140077 2.290000e-57 233
10 TraesCS2A01G323200 chr2D 89.041 146 6 3 3643 3778 433865515 433865660 5.050000e-39 172
11 TraesCS2A01G323200 chr2D 88.112 143 12 3 179 320 433862148 433862286 8.460000e-37 165
12 TraesCS2A01G323200 chr2B 91.348 2774 148 47 179 2927 512908388 512911094 0.000000e+00 3709
13 TraesCS2A01G323200 chr2B 84.830 1002 115 23 1153 2146 513252754 513253726 0.000000e+00 974
14 TraesCS2A01G323200 chr2B 88.340 506 42 10 2955 3452 512911088 512911584 3.270000e-165 592
15 TraesCS2A01G323200 chr2B 98.462 195 2 1 3452 3645 747861245 747861439 3.640000e-90 342
16 TraesCS2A01G323200 chr2B 97.949 195 3 1 3452 3645 104810512 104810706 1.690000e-88 337
17 TraesCS2A01G323200 chr2B 90.052 191 16 3 2488 2676 513254171 513254360 1.060000e-60 244
18 TraesCS2A01G323200 chr2B 94.340 159 8 1 179 336 512907333 512907491 3.800000e-60 243
19 TraesCS2A01G323200 chr2B 92.920 113 5 1 420 532 512907491 512907600 1.090000e-35 161
20 TraesCS2A01G323200 chr2B 91.209 91 2 1 3694 3778 512911663 512911753 6.680000e-23 119
21 TraesCS2A01G323200 chr7A 97.561 205 3 2 3452 3656 460311552 460311754 2.180000e-92 350
22 TraesCS2A01G323200 chr7A 97.714 175 4 0 1 175 682443758 682443584 6.180000e-78 302
23 TraesCS2A01G323200 chr5B 98.462 195 3 0 3452 3646 671201426 671201620 1.010000e-90 344
24 TraesCS2A01G323200 chr7B 98.454 194 3 0 3452 3645 332310737 332310930 3.640000e-90 342
25 TraesCS2A01G323200 chr3A 98.462 195 2 1 3452 3645 24995077 24994883 3.640000e-90 342
26 TraesCS2A01G323200 chr3A 97.159 176 5 0 2 177 377489624 377489799 7.990000e-77 298
27 TraesCS2A01G323200 chr3A 97.159 176 5 0 1 176 379998598 379998423 7.990000e-77 298
28 TraesCS2A01G323200 chr3A 97.159 176 5 0 1 176 382902366 382902541 7.990000e-77 298
29 TraesCS2A01G323200 chr3A 97.143 175 5 0 1 175 338437258 338437084 2.870000e-76 296
30 TraesCS2A01G323200 chr4A 98.446 193 3 0 3452 3644 708541784 708541976 1.310000e-89 340
31 TraesCS2A01G323200 chr4B 98.438 192 3 0 3452 3643 472070838 472070647 4.710000e-89 339
32 TraesCS2A01G323200 chr6B 97.938 194 4 0 3452 3645 24970043 24969850 1.690000e-88 337
33 TraesCS2A01G323200 chr1A 96.154 182 7 0 1 182 180256098 180255917 7.990000e-77 298


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G323200 chr2A 553277363 553281167 3804 True 7027.00 7027 100.00000 1 3805 1 chr2A.!!$R2 3804
1 TraesCS2A01G323200 chr2A 552838448 552840024 1576 True 601.50 959 87.38150 1163 2676 2 chr2A.!!$R3 1513
2 TraesCS2A01G323200 chr2D 433862148 433865660 3512 False 1154.75 3825 88.47875 179 3778 4 chr2D.!!$F1 3599
3 TraesCS2A01G323200 chr2D 434138489 434140077 1588 False 593.00 953 86.73100 1153 2676 2 chr2D.!!$F2 1523
4 TraesCS2A01G323200 chr2B 512907333 512911753 4420 False 964.80 3709 91.63140 179 3778 5 chr2B.!!$F3 3599
5 TraesCS2A01G323200 chr2B 513252754 513254360 1606 False 609.00 974 87.44100 1153 2676 2 chr2B.!!$F4 1523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.033208 TTTCATGGATGGGCTGGGAC 60.033 55.0 0.0 0.0 0.0 4.46 F
557 1436 0.034756 TGTCATCAACTCCACACCCG 59.965 55.0 0.0 0.0 0.0 5.28 F
897 1783 0.179012 ATTGTTCCCGTTGTTCCCGT 60.179 50.0 0.0 0.0 0.0 5.28 F
898 1784 0.394080 TTGTTCCCGTTGTTCCCGTT 60.394 50.0 0.0 0.0 0.0 4.44 F
1026 1912 0.460311 CTCTTTCTACATCGCCCGGT 59.540 55.0 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1100 1986 0.103208 CCTCCGAATTCTCCTGGTCG 59.897 60.0 3.52 0.00 0.00 4.79 R
2215 3176 0.625849 CAGCCTGGTCCCTGGTTTAT 59.374 55.0 10.54 0.00 37.37 1.40 R
2684 3737 0.879765 ACTACACGACCAAGACGAGG 59.120 55.0 0.00 0.00 34.70 4.63 R
2779 3835 5.910166 GTGACATGTGCTAAGTAGACTATCG 59.090 44.0 1.15 0.00 0.00 2.92 R
2956 4014 0.174162 GCATCCATGGGTGTGCTTTC 59.826 55.0 25.82 4.56 34.50 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.436368 GGTCTTGAGAGGACCCGA 57.564 61.111 1.80 0.00 45.31 5.14
18 19 2.903404 GGTCTTGAGAGGACCCGAT 58.097 57.895 1.80 0.00 45.31 4.18
22 23 1.062886 TCTTGAGAGGACCCGATGGAT 60.063 52.381 0.00 0.00 34.81 3.41
23 24 2.177016 TCTTGAGAGGACCCGATGGATA 59.823 50.000 0.00 0.00 34.81 2.59
25 26 2.808919 TGAGAGGACCCGATGGATATC 58.191 52.381 0.00 0.00 34.81 1.63
57 58 3.650461 TGGATATCCATCGGATTTGGACA 59.350 43.478 20.98 0.00 45.71 4.02
59 60 4.637534 GGATATCCATCGGATTTGGACATG 59.362 45.833 17.34 0.00 45.71 3.21
60 61 2.346766 TCCATCGGATTTGGACATGG 57.653 50.000 0.00 0.00 38.35 3.66
61 62 1.563879 TCCATCGGATTTGGACATGGT 59.436 47.619 0.00 0.00 38.35 3.55
62 63 1.949525 CCATCGGATTTGGACATGGTC 59.050 52.381 0.00 0.00 36.26 4.02
64 65 3.216800 CATCGGATTTGGACATGGTCAT 58.783 45.455 0.00 0.00 33.68 3.06
65 66 4.388485 CATCGGATTTGGACATGGTCATA 58.612 43.478 0.00 0.00 33.68 2.15
67 68 5.047566 TCGGATTTGGACATGGTCATAAT 57.952 39.130 0.00 0.00 33.68 1.28
69 70 5.890985 TCGGATTTGGACATGGTCATAATTT 59.109 36.000 0.00 0.00 33.68 1.82
70 71 6.379703 TCGGATTTGGACATGGTCATAATTTT 59.620 34.615 0.00 0.00 33.68 1.82
71 72 7.041107 CGGATTTGGACATGGTCATAATTTTT 58.959 34.615 0.00 0.00 33.68 1.94
72 73 7.222611 CGGATTTGGACATGGTCATAATTTTTC 59.777 37.037 0.00 0.00 33.68 2.29
73 74 7.222611 GGATTTGGACATGGTCATAATTTTTCG 59.777 37.037 0.00 0.00 33.68 3.46
74 75 4.992688 TGGACATGGTCATAATTTTTCGC 58.007 39.130 0.00 0.00 33.68 4.70
75 76 4.142271 TGGACATGGTCATAATTTTTCGCC 60.142 41.667 0.00 0.00 33.68 5.54
76 77 4.359706 GACATGGTCATAATTTTTCGCCC 58.640 43.478 0.00 0.00 32.09 6.13
78 79 4.405358 ACATGGTCATAATTTTTCGCCCAT 59.595 37.500 0.00 0.00 31.81 4.00
79 80 4.383850 TGGTCATAATTTTTCGCCCATG 57.616 40.909 0.00 0.00 0.00 3.66
81 82 3.383185 GGTCATAATTTTTCGCCCATGGA 59.617 43.478 15.22 0.00 0.00 3.41
83 84 5.242838 GGTCATAATTTTTCGCCCATGGATA 59.757 40.000 15.22 0.00 0.00 2.59
84 85 6.071391 GGTCATAATTTTTCGCCCATGGATAT 60.071 38.462 15.22 0.00 0.00 1.63
85 86 7.378181 GTCATAATTTTTCGCCCATGGATATT 58.622 34.615 15.22 2.41 0.00 1.28
86 87 7.872483 GTCATAATTTTTCGCCCATGGATATTT 59.128 33.333 15.22 0.00 0.00 1.40
88 89 5.867903 ATTTTTCGCCCATGGATATTTCA 57.132 34.783 15.22 0.00 0.00 2.69
89 90 5.867903 TTTTTCGCCCATGGATATTTCAT 57.132 34.783 15.22 0.00 0.00 2.57
90 91 4.852134 TTTCGCCCATGGATATTTCATG 57.148 40.909 15.22 11.03 41.04 3.07
99 100 3.770046 TGGATATTTCATGGATGGGCTG 58.230 45.455 0.00 0.00 0.00 4.85
100 101 3.094572 GGATATTTCATGGATGGGCTGG 58.905 50.000 0.00 0.00 0.00 4.85
101 102 2.681319 TATTTCATGGATGGGCTGGG 57.319 50.000 0.00 0.00 0.00 4.45
103 104 0.033208 TTTCATGGATGGGCTGGGAC 60.033 55.000 0.00 0.00 0.00 4.46
104 105 0.920763 TTCATGGATGGGCTGGGACT 60.921 55.000 0.00 0.00 0.00 3.85
105 106 1.152819 CATGGATGGGCTGGGACTG 60.153 63.158 0.00 0.00 0.00 3.51
115 116 3.963733 CTGGGACTGCCTTCATGAA 57.036 52.632 8.12 8.12 0.00 2.57
116 117 2.431954 CTGGGACTGCCTTCATGAAT 57.568 50.000 8.96 0.00 0.00 2.57
117 118 3.565764 CTGGGACTGCCTTCATGAATA 57.434 47.619 8.96 0.00 0.00 1.75
119 120 3.819337 CTGGGACTGCCTTCATGAATATG 59.181 47.826 8.96 2.13 35.57 1.78
120 121 2.555757 GGGACTGCCTTCATGAATATGC 59.444 50.000 8.96 12.42 34.21 3.14
121 122 3.216800 GGACTGCCTTCATGAATATGCA 58.783 45.455 19.89 19.89 34.21 3.96
122 123 3.825014 GGACTGCCTTCATGAATATGCAT 59.175 43.478 20.81 3.79 34.21 3.96
123 124 5.005740 GGACTGCCTTCATGAATATGCATA 58.994 41.667 20.81 9.27 34.21 3.14
124 125 5.651139 GGACTGCCTTCATGAATATGCATAT 59.349 40.000 20.81 13.63 34.21 1.78
125 126 6.825213 GGACTGCCTTCATGAATATGCATATA 59.175 38.462 19.39 5.64 34.21 0.86
126 127 7.012138 GGACTGCCTTCATGAATATGCATATAG 59.988 40.741 19.39 11.51 34.21 1.31
129 130 9.121658 CTGCCTTCATGAATATGCATATAGATT 57.878 33.333 19.39 5.88 34.21 2.40
131 132 9.731819 GCCTTCATGAATATGCATATAGATTTG 57.268 33.333 19.39 12.43 34.21 2.32
145 146 9.846248 GCATATAGATTTGATATTGTTCAACCC 57.154 33.333 0.00 0.00 35.42 4.11
148 149 8.924511 ATAGATTTGATATTGTTCAACCCGAT 57.075 30.769 0.00 0.00 35.42 4.18
149 150 7.264373 AGATTTGATATTGTTCAACCCGATC 57.736 36.000 0.00 0.00 35.42 3.69
150 151 5.828299 TTTGATATTGTTCAACCCGATCC 57.172 39.130 0.00 0.00 35.42 3.36
151 152 4.495690 TGATATTGTTCAACCCGATCCA 57.504 40.909 0.00 0.00 0.00 3.41
152 153 4.849518 TGATATTGTTCAACCCGATCCAA 58.150 39.130 0.00 0.00 0.00 3.53
154 155 3.934457 ATTGTTCAACCCGATCCAAAC 57.066 42.857 0.00 0.00 0.00 2.93
155 156 1.611519 TGTTCAACCCGATCCAAACC 58.388 50.000 0.00 0.00 0.00 3.27
156 157 0.885879 GTTCAACCCGATCCAAACCC 59.114 55.000 0.00 0.00 0.00 4.11
157 158 0.606944 TTCAACCCGATCCAAACCCG 60.607 55.000 0.00 0.00 0.00 5.28
159 160 1.002990 AACCCGATCCAAACCCGAC 60.003 57.895 0.00 0.00 0.00 4.79
160 161 2.124860 CCCGATCCAAACCCGACC 60.125 66.667 0.00 0.00 0.00 4.79
161 162 2.124860 CCGATCCAAACCCGACCC 60.125 66.667 0.00 0.00 0.00 4.46
163 164 1.223487 CGATCCAAACCCGACCCAT 59.777 57.895 0.00 0.00 0.00 4.00
165 166 1.102978 GATCCAAACCCGACCCATTG 58.897 55.000 0.00 0.00 0.00 2.82
166 167 0.970427 ATCCAAACCCGACCCATTGC 60.970 55.000 0.00 0.00 0.00 3.56
167 168 2.645192 CCAAACCCGACCCATTGCC 61.645 63.158 0.00 0.00 0.00 4.52
168 169 1.905843 CAAACCCGACCCATTGCCA 60.906 57.895 0.00 0.00 0.00 4.92
169 170 1.078347 AAACCCGACCCATTGCCAT 59.922 52.632 0.00 0.00 0.00 4.40
170 171 0.970427 AAACCCGACCCATTGCCATC 60.970 55.000 0.00 0.00 0.00 3.51
171 172 2.519302 CCCGACCCATTGCCATCC 60.519 66.667 0.00 0.00 0.00 3.51
172 173 2.597340 CCGACCCATTGCCATCCT 59.403 61.111 0.00 0.00 0.00 3.24
173 174 1.076777 CCGACCCATTGCCATCCTT 60.077 57.895 0.00 0.00 0.00 3.36
174 175 0.182537 CCGACCCATTGCCATCCTTA 59.817 55.000 0.00 0.00 0.00 2.69
175 176 1.597742 CGACCCATTGCCATCCTTAG 58.402 55.000 0.00 0.00 0.00 2.18
176 177 1.322442 GACCCATTGCCATCCTTAGC 58.678 55.000 0.00 0.00 0.00 3.09
178 179 1.133668 ACCCATTGCCATCCTTAGCTC 60.134 52.381 0.00 0.00 0.00 4.09
179 180 1.144503 CCCATTGCCATCCTTAGCTCT 59.855 52.381 0.00 0.00 0.00 4.09
181 182 3.181440 CCCATTGCCATCCTTAGCTCTAA 60.181 47.826 0.00 0.00 0.00 2.10
182 183 3.817647 CCATTGCCATCCTTAGCTCTAAC 59.182 47.826 0.00 0.00 0.00 2.34
188 1066 4.755411 CCATCCTTAGCTCTAACGTTTCA 58.245 43.478 5.91 0.00 0.00 2.69
220 1099 0.898326 GTGCCTTCCCGGGAATGTTT 60.898 55.000 35.62 0.00 33.53 2.83
276 1155 1.859574 AGCTGGGCCCCACTATTATTT 59.140 47.619 22.27 0.00 0.00 1.40
288 1167 8.691797 GCCCCACTATTATTTACATCTCAAAAA 58.308 33.333 0.00 0.00 0.00 1.94
365 1244 2.094854 GCATGTGGCCTGAGAAAAGAAG 60.095 50.000 3.32 0.00 36.11 2.85
418 1297 4.106029 TGAAGATAAAGTTCCGTCTCCG 57.894 45.455 0.00 0.00 0.00 4.63
488 1367 3.617669 GCGTTTGGTATGAATGAATCCG 58.382 45.455 0.00 0.00 0.00 4.18
489 1368 3.311322 GCGTTTGGTATGAATGAATCCGA 59.689 43.478 0.00 0.00 0.00 4.55
490 1369 4.024048 GCGTTTGGTATGAATGAATCCGAT 60.024 41.667 0.00 0.00 0.00 4.18
493 1372 7.573096 GCGTTTGGTATGAATGAATCCGATTAT 60.573 37.037 0.00 0.00 0.00 1.28
557 1436 0.034756 TGTCATCAACTCCACACCCG 59.965 55.000 0.00 0.00 0.00 5.28
572 1451 4.747605 CCACACCCGAAACCATTTTAAAAG 59.252 41.667 6.79 0.00 0.00 2.27
595 1474 2.757868 TGAACTCCACACCCAAAAAGTG 59.242 45.455 0.00 0.00 41.15 3.16
644 1524 1.971695 GTTCCCTTTCCGCACCCAG 60.972 63.158 0.00 0.00 0.00 4.45
725 1608 3.494254 ACTGCCGGTGGTTTCCCA 61.494 61.111 1.90 0.00 38.87 4.37
759 1642 0.813821 TCAGATCACCTCGCTGACTG 59.186 55.000 0.00 0.00 34.02 3.51
771 1654 1.039856 GCTGACTGAGATCCTCCTCC 58.960 60.000 0.00 0.00 32.32 4.30
773 1656 0.263172 TGACTGAGATCCTCCTCCCC 59.737 60.000 0.00 0.00 32.32 4.81
878 1764 0.473755 CCAATGATCATCCCGTCCCA 59.526 55.000 9.06 0.00 0.00 4.37
891 1777 0.887387 CGTCCCATTGTTCCCGTTGT 60.887 55.000 0.00 0.00 0.00 3.32
892 1778 1.324383 GTCCCATTGTTCCCGTTGTT 58.676 50.000 0.00 0.00 0.00 2.83
894 1780 0.601057 CCCATTGTTCCCGTTGTTCC 59.399 55.000 0.00 0.00 0.00 3.62
896 1782 0.239879 CATTGTTCCCGTTGTTCCCG 59.760 55.000 0.00 0.00 0.00 5.14
897 1783 0.179012 ATTGTTCCCGTTGTTCCCGT 60.179 50.000 0.00 0.00 0.00 5.28
898 1784 0.394080 TTGTTCCCGTTGTTCCCGTT 60.394 50.000 0.00 0.00 0.00 4.44
899 1785 1.096386 TGTTCCCGTTGTTCCCGTTG 61.096 55.000 0.00 0.00 0.00 4.10
900 1786 2.188161 TTCCCGTTGTTCCCGTTGC 61.188 57.895 0.00 0.00 0.00 4.17
901 1787 3.666253 CCCGTTGTTCCCGTTGCC 61.666 66.667 0.00 0.00 0.00 4.52
902 1788 3.666253 CCGTTGTTCCCGTTGCCC 61.666 66.667 0.00 0.00 0.00 5.36
903 1789 4.020378 CGTTGTTCCCGTTGCCCG 62.020 66.667 0.00 0.00 0.00 6.13
904 1790 2.903350 GTTGTTCCCGTTGCCCGT 60.903 61.111 0.00 0.00 33.66 5.28
905 1791 2.902846 TTGTTCCCGTTGCCCGTG 60.903 61.111 0.00 0.00 33.66 4.94
1014 1900 5.125417 CGAGACTTCCTCTCATTCTCTTTCT 59.875 44.000 0.00 0.00 45.43 2.52
1023 1909 4.054671 CTCATTCTCTTTCTACATCGCCC 58.945 47.826 0.00 0.00 0.00 6.13
1024 1910 2.579207 TTCTCTTTCTACATCGCCCG 57.421 50.000 0.00 0.00 0.00 6.13
1025 1911 0.744874 TCTCTTTCTACATCGCCCGG 59.255 55.000 0.00 0.00 0.00 5.73
1026 1912 0.460311 CTCTTTCTACATCGCCCGGT 59.540 55.000 0.00 0.00 0.00 5.28
1055 1941 0.678048 ATCTGCTCCGTTTCTTGGGC 60.678 55.000 0.00 0.00 0.00 5.36
1067 1953 1.743252 CTTGGGCTTCTCGGTGCTC 60.743 63.158 0.00 0.00 0.00 4.26
1100 1986 3.047877 CGTCCCGTTGCCCTTGTC 61.048 66.667 0.00 0.00 0.00 3.18
1124 2012 0.461961 AGGAGAATTCGGAGGCTTCG 59.538 55.000 9.46 9.46 0.00 3.79
1259 2149 3.439513 ATCGCCGCGCATTCCTACA 62.440 57.895 8.75 0.00 0.00 2.74
1284 2178 1.161843 GTAAGCCACTTTGCCGCTTA 58.838 50.000 0.00 0.00 42.60 3.09
1286 2180 2.122783 AAGCCACTTTGCCGCTTATA 57.877 45.000 0.00 0.00 40.94 0.98
1289 2183 3.815809 AGCCACTTTGCCGCTTATATTA 58.184 40.909 0.00 0.00 0.00 0.98
1311 2205 0.463654 TTTATGCGGCGGATCTTGCT 60.464 50.000 19.45 0.00 0.00 3.91
1314 2208 1.315257 ATGCGGCGGATCTTGCTTTT 61.315 50.000 8.49 0.00 0.00 2.27
2152 3051 2.693074 AGGTGAGAAAACGCATTTTGGT 59.307 40.909 0.00 0.00 38.17 3.67
2153 3052 3.049912 GGTGAGAAAACGCATTTTGGTC 58.950 45.455 0.00 0.00 38.17 4.02
2154 3053 3.243401 GGTGAGAAAACGCATTTTGGTCT 60.243 43.478 0.00 0.00 38.17 3.85
2155 3054 4.023536 GGTGAGAAAACGCATTTTGGTCTA 60.024 41.667 0.00 0.00 38.17 2.59
2167 3066 6.039616 GCATTTTGGTCTAGAAAAACACACA 58.960 36.000 4.79 0.00 0.00 3.72
2175 3113 7.330946 TGGTCTAGAAAAACACACATTCTATCG 59.669 37.037 0.00 0.00 35.68 2.92
2178 3116 9.140286 TCTAGAAAAACACACATTCTATCGAAG 57.860 33.333 0.00 0.00 35.68 3.79
2194 3132 1.037493 GAAGGAAACGTGGCCCTTTT 58.963 50.000 14.89 0.00 40.14 2.27
2215 3176 1.074319 GCAAACGCACGGTAGATCGA 61.074 55.000 0.00 0.00 0.00 3.59
2216 3177 1.556564 CAAACGCACGGTAGATCGAT 58.443 50.000 0.00 0.00 0.00 3.59
2218 3179 3.110358 CAAACGCACGGTAGATCGATAA 58.890 45.455 0.00 0.00 0.00 1.75
2219 3180 3.425577 AACGCACGGTAGATCGATAAA 57.574 42.857 0.00 0.00 0.00 1.40
2223 3184 3.050619 GCACGGTAGATCGATAAACCAG 58.949 50.000 22.10 17.60 32.04 4.00
2290 3311 3.242248 GGAAATCGGTTCGTACTTCATCG 59.758 47.826 0.00 0.00 37.08 3.84
2317 3341 9.537192 CAATATACAAGGAAATTGGACGTACTA 57.463 33.333 0.00 0.00 43.68 1.82
2379 3403 1.450669 GGGAACGCCGCCAATAGAA 60.451 57.895 0.00 0.00 33.83 2.10
2456 3493 1.072173 TCTGGTGTTGGTGAGGTGATG 59.928 52.381 0.00 0.00 0.00 3.07
2462 3499 2.437651 TGTTGGTGAGGTGATGTCAGAA 59.562 45.455 0.00 0.00 0.00 3.02
2466 3503 2.564947 GGTGAGGTGATGTCAGAAGACT 59.435 50.000 0.00 0.00 45.20 3.24
2468 3505 3.006323 GTGAGGTGATGTCAGAAGACTGT 59.994 47.826 0.00 0.00 45.20 3.55
2471 3508 5.304357 TGAGGTGATGTCAGAAGACTGTAAA 59.696 40.000 0.00 0.00 45.20 2.01
2479 3516 5.975344 TGTCAGAAGACTGTAAACTAACGTG 59.025 40.000 0.00 0.00 45.20 4.49
2480 3517 4.980434 TCAGAAGACTGTAAACTAACGTGC 59.020 41.667 0.00 0.00 43.81 5.34
2485 3529 3.189285 ACTGTAAACTAACGTGCGTTGT 58.811 40.909 18.63 11.96 38.92 3.32
2486 3530 3.000523 ACTGTAAACTAACGTGCGTTGTG 59.999 43.478 18.63 13.43 38.92 3.33
2574 3619 1.079057 GAAGAAGGTGACGAGGGCC 60.079 63.158 0.00 0.00 0.00 5.80
2590 3635 1.685224 GCCAAGGTGATGTCCTCCA 59.315 57.895 0.00 0.00 36.74 3.86
2684 3737 6.405538 AGTTGAGATGAGAAGAGTCATTTCC 58.594 40.000 0.00 0.00 37.29 3.13
2712 3765 3.665745 TGGTCGTGTAGTTTAACCCTC 57.334 47.619 0.00 0.00 0.00 4.30
2713 3766 2.299867 TGGTCGTGTAGTTTAACCCTCC 59.700 50.000 0.00 0.00 0.00 4.30
2758 3814 6.263392 GTGAGCTCAGGTTGTACTATCTATCA 59.737 42.308 18.89 0.00 0.00 2.15
2759 3815 7.007116 TGAGCTCAGGTTGTACTATCTATCAT 58.993 38.462 13.74 0.00 0.00 2.45
2760 3816 8.164070 TGAGCTCAGGTTGTACTATCTATCATA 58.836 37.037 13.74 0.00 0.00 2.15
2836 3892 4.530388 CGAAGACGGTTAAACTTTTTCCC 58.470 43.478 0.00 0.00 35.72 3.97
2842 3900 8.065473 AGACGGTTAAACTTTTTCCCTTTTTA 57.935 30.769 0.00 0.00 0.00 1.52
2862 3920 9.698617 CTTTTTACGATGGTTAAACTATAGTGC 57.301 33.333 6.06 0.00 29.04 4.40
2875 3933 0.029834 ATAGTGCTTACCGTACCGCG 59.970 55.000 0.00 0.00 40.95 6.46
2916 3974 0.747255 ACAGACACACGTGCTTCTCT 59.253 50.000 17.22 7.24 0.00 3.10
2927 3985 2.095161 CGTGCTTCTCTACCTCGAAAGT 60.095 50.000 0.00 0.00 0.00 2.66
2928 3986 3.503891 GTGCTTCTCTACCTCGAAAGTC 58.496 50.000 0.00 0.00 0.00 3.01
2929 3987 2.161808 TGCTTCTCTACCTCGAAAGTCG 59.838 50.000 0.00 0.00 42.10 4.18
2940 3998 2.669364 TCGAAAGTCGAAAGCACTACC 58.331 47.619 0.00 0.00 46.90 3.18
2941 3999 1.725164 CGAAAGTCGAAAGCACTACCC 59.275 52.381 0.00 0.00 43.74 3.69
2942 4000 2.609737 CGAAAGTCGAAAGCACTACCCT 60.610 50.000 0.00 0.00 43.74 4.34
2943 4001 3.366679 CGAAAGTCGAAAGCACTACCCTA 60.367 47.826 0.00 0.00 43.74 3.53
2944 4002 4.563061 GAAAGTCGAAAGCACTACCCTAA 58.437 43.478 0.00 0.00 0.00 2.69
2945 4003 4.612264 AAGTCGAAAGCACTACCCTAAA 57.388 40.909 0.00 0.00 0.00 1.85
2946 4004 4.612264 AGTCGAAAGCACTACCCTAAAA 57.388 40.909 0.00 0.00 0.00 1.52
2947 4005 4.964593 AGTCGAAAGCACTACCCTAAAAA 58.035 39.130 0.00 0.00 0.00 1.94
2967 4025 2.863401 AAAAAGTCGAAAGCACACCC 57.137 45.000 0.00 0.00 0.00 4.61
2968 4026 1.757682 AAAAGTCGAAAGCACACCCA 58.242 45.000 0.00 0.00 0.00 4.51
2969 4027 1.981256 AAAGTCGAAAGCACACCCAT 58.019 45.000 0.00 0.00 0.00 4.00
2970 4028 1.238439 AAGTCGAAAGCACACCCATG 58.762 50.000 0.00 0.00 0.00 3.66
2971 4029 0.606401 AGTCGAAAGCACACCCATGG 60.606 55.000 4.14 4.14 0.00 3.66
2987 4045 0.622136 ATGGATGCTGCTCTGTTCCA 59.378 50.000 0.00 6.29 40.54 3.53
3120 4178 3.019564 GGCAAGTCACCAGAATATGCTT 58.980 45.455 0.00 0.00 31.43 3.91
3125 4183 3.054875 AGTCACCAGAATATGCTTGCTGA 60.055 43.478 0.00 0.00 0.00 4.26
3128 4186 5.704515 GTCACCAGAATATGCTTGCTGATAT 59.295 40.000 0.00 0.00 0.00 1.63
3134 4192 8.021973 CCAGAATATGCTTGCTGATATTCTTTC 58.978 37.037 17.85 2.79 44.24 2.62
3142 4200 6.038050 GCTTGCTGATATTCTTTCTTAGCAGT 59.962 38.462 0.00 0.00 40.31 4.40
3176 4234 0.456312 CAACGTGACTCCTACTCGCC 60.456 60.000 0.00 0.00 0.00 5.54
3178 4236 2.102553 GTGACTCCTACTCGCCGC 59.897 66.667 0.00 0.00 0.00 6.53
3186 4244 0.308376 CCTACTCGCCGCTACTCTTC 59.692 60.000 0.00 0.00 0.00 2.87
3223 4282 2.540101 CCAAAATATGCTCGTCTCGGTC 59.460 50.000 0.00 0.00 0.00 4.79
3224 4283 3.448686 CAAAATATGCTCGTCTCGGTCT 58.551 45.455 0.00 0.00 0.00 3.85
3225 4284 3.357166 AAATATGCTCGTCTCGGTCTC 57.643 47.619 0.00 0.00 0.00 3.36
3226 4285 0.869068 ATATGCTCGTCTCGGTCTCG 59.131 55.000 0.00 0.00 37.82 4.04
3227 4286 1.158484 TATGCTCGTCTCGGTCTCGG 61.158 60.000 0.00 0.00 36.95 4.63
3228 4287 4.539881 GCTCGTCTCGGTCTCGGC 62.540 72.222 0.00 0.00 36.95 5.54
3251 4313 2.046507 ACTACCTGCTGCTGCTGC 60.047 61.111 22.51 22.51 40.48 5.25
3252 4314 2.268280 CTACCTGCTGCTGCTGCT 59.732 61.111 27.67 13.59 40.48 4.24
3322 4395 3.025262 GAGACCTCCCGTTATGAAGAGT 58.975 50.000 0.00 0.00 0.00 3.24
3366 4464 6.327365 TCCCAGAATACACATACATGTCAGAT 59.673 38.462 0.00 0.00 39.39 2.90
3379 4477 2.483583 GTCAGATAGACAGCTCCACG 57.516 55.000 0.00 0.00 46.77 4.94
3380 4478 1.746220 GTCAGATAGACAGCTCCACGT 59.254 52.381 0.00 0.00 46.77 4.49
3381 4479 2.943690 GTCAGATAGACAGCTCCACGTA 59.056 50.000 0.00 0.00 46.77 3.57
3456 4554 2.257371 GAGGTGCGTGCGTGTCTA 59.743 61.111 0.00 0.00 0.00 2.59
3458 4556 2.049433 GGTGCGTGCGTGTCTACT 60.049 61.111 0.00 0.00 0.00 2.57
3459 4557 1.210931 GGTGCGTGCGTGTCTACTA 59.789 57.895 0.00 0.00 0.00 1.82
3460 4558 1.069378 GGTGCGTGCGTGTCTACTAC 61.069 60.000 0.00 0.00 0.00 2.73
3461 4559 0.386352 GTGCGTGCGTGTCTACTACA 60.386 55.000 0.00 0.00 35.06 2.74
3462 4560 0.311477 TGCGTGCGTGTCTACTACAA 59.689 50.000 0.00 0.00 40.63 2.41
3467 4565 3.181544 CGTGCGTGTCTACTACAACAATG 60.182 47.826 0.00 0.00 40.63 2.82
3469 4567 4.210537 GTGCGTGTCTACTACAACAATGTT 59.789 41.667 0.00 0.00 40.63 2.71
3470 4568 4.812091 TGCGTGTCTACTACAACAATGTTT 59.188 37.500 0.00 0.00 40.63 2.83
3471 4569 5.137403 GCGTGTCTACTACAACAATGTTTG 58.863 41.667 0.00 0.00 40.63 2.93
3472 4570 5.137403 CGTGTCTACTACAACAATGTTTGC 58.863 41.667 0.00 0.00 40.63 3.68
3473 4571 5.449304 GTGTCTACTACAACAATGTTTGCC 58.551 41.667 0.00 0.00 40.63 4.52
3474 4572 4.517453 TGTCTACTACAACAATGTTTGCCC 59.483 41.667 0.00 0.00 41.05 5.36
3475 4573 3.749088 TCTACTACAACAATGTTTGCCCG 59.251 43.478 0.00 0.00 41.05 6.13
3476 4574 1.611491 ACTACAACAATGTTTGCCCGG 59.389 47.619 0.00 0.00 41.05 5.73
3477 4575 0.315568 TACAACAATGTTTGCCCGGC 59.684 50.000 1.04 1.04 41.05 6.13
3478 4576 1.367102 CAACAATGTTTGCCCGGCT 59.633 52.632 11.61 0.00 0.00 5.52
3479 4577 0.667184 CAACAATGTTTGCCCGGCTC 60.667 55.000 11.61 2.06 0.00 4.70
3480 4578 0.827507 AACAATGTTTGCCCGGCTCT 60.828 50.000 11.61 0.00 0.00 4.09
3481 4579 1.213537 CAATGTTTGCCCGGCTCTG 59.786 57.895 11.61 0.00 0.00 3.35
3482 4580 1.228552 AATGTTTGCCCGGCTCTGT 60.229 52.632 11.61 0.00 0.00 3.41
3483 4581 1.244019 AATGTTTGCCCGGCTCTGTC 61.244 55.000 11.61 0.00 0.00 3.51
3484 4582 3.423154 GTTTGCCCGGCTCTGTCG 61.423 66.667 11.61 0.00 0.00 4.35
3485 4583 3.621805 TTTGCCCGGCTCTGTCGA 61.622 61.111 11.61 0.00 29.41 4.20
3486 4584 3.589654 TTTGCCCGGCTCTGTCGAG 62.590 63.158 11.61 0.00 40.35 4.04
3490 4588 3.522731 CCGGCTCTGTCGAGGGAG 61.523 72.222 9.45 9.45 37.75 4.30
3491 4589 3.522731 CGGCTCTGTCGAGGGAGG 61.523 72.222 14.03 0.00 37.75 4.30
3492 4590 3.151022 GGCTCTGTCGAGGGAGGG 61.151 72.222 14.03 0.09 37.75 4.30
3493 4591 3.151022 GCTCTGTCGAGGGAGGGG 61.151 72.222 14.03 0.00 37.75 4.79
3494 4592 3.151022 CTCTGTCGAGGGAGGGGC 61.151 72.222 6.66 0.00 33.51 5.80
3497 4595 4.458829 TGTCGAGGGAGGGGCGAT 62.459 66.667 0.00 0.00 36.37 4.58
3498 4596 2.203451 GTCGAGGGAGGGGCGATA 60.203 66.667 0.00 0.00 36.37 2.92
3499 4597 1.831286 GTCGAGGGAGGGGCGATAA 60.831 63.158 0.00 0.00 36.37 1.75
3500 4598 1.831286 TCGAGGGAGGGGCGATAAC 60.831 63.158 0.00 0.00 0.00 1.89
3501 4599 2.131709 CGAGGGAGGGGCGATAACA 61.132 63.158 0.00 0.00 0.00 2.41
3502 4600 1.749033 GAGGGAGGGGCGATAACAG 59.251 63.158 0.00 0.00 0.00 3.16
3503 4601 2.111251 GGGAGGGGCGATAACAGC 59.889 66.667 0.00 0.00 0.00 4.40
3504 4602 2.280186 GGAGGGGCGATAACAGCG 60.280 66.667 0.00 0.00 35.00 5.18
3505 4603 2.280186 GAGGGGCGATAACAGCGG 60.280 66.667 0.00 0.00 35.00 5.52
3526 4624 3.191539 GCCTTCGGCTCGCTTCAG 61.192 66.667 0.00 0.00 46.69 3.02
3527 4625 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
3528 4626 2.097038 CCTTCGGCTCGCTTCAGTG 61.097 63.158 0.00 0.00 0.00 3.66
3529 4627 2.734673 CTTCGGCTCGCTTCAGTGC 61.735 63.158 0.00 0.00 0.00 4.40
3530 4628 3.226429 TTCGGCTCGCTTCAGTGCT 62.226 57.895 0.00 0.00 0.00 4.40
3531 4629 2.715532 TTCGGCTCGCTTCAGTGCTT 62.716 55.000 0.00 0.00 0.00 3.91
3532 4630 2.866028 GGCTCGCTTCAGTGCTTG 59.134 61.111 0.00 0.00 0.00 4.01
3533 4631 1.963338 GGCTCGCTTCAGTGCTTGT 60.963 57.895 0.00 0.00 0.00 3.16
3534 4632 0.670546 GGCTCGCTTCAGTGCTTGTA 60.671 55.000 0.00 0.00 0.00 2.41
3535 4633 0.718343 GCTCGCTTCAGTGCTTGTAG 59.282 55.000 0.00 0.00 0.00 2.74
3536 4634 1.937108 GCTCGCTTCAGTGCTTGTAGT 60.937 52.381 0.00 0.00 0.00 2.73
3537 4635 1.989165 CTCGCTTCAGTGCTTGTAGTC 59.011 52.381 0.00 0.00 0.00 2.59
3538 4636 0.710567 CGCTTCAGTGCTTGTAGTCG 59.289 55.000 0.00 0.00 0.00 4.18
3539 4637 1.784525 GCTTCAGTGCTTGTAGTCGT 58.215 50.000 0.00 0.00 0.00 4.34
3540 4638 1.721926 GCTTCAGTGCTTGTAGTCGTC 59.278 52.381 0.00 0.00 0.00 4.20
3541 4639 1.979469 CTTCAGTGCTTGTAGTCGTCG 59.021 52.381 0.00 0.00 0.00 5.12
3542 4640 0.386858 TCAGTGCTTGTAGTCGTCGC 60.387 55.000 0.00 0.00 0.00 5.19
3543 4641 0.387367 CAGTGCTTGTAGTCGTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
3544 4642 1.135774 CAGTGCTTGTAGTCGTCGCTA 60.136 52.381 0.00 0.00 0.00 4.26
3545 4643 1.130749 AGTGCTTGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
3546 4644 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
3547 4645 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
3548 4646 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
3549 4647 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
3550 4648 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
3551 4649 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
3552 4650 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
3553 4651 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
3554 4652 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
3555 4653 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
3556 4654 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
3557 4655 1.028868 GTCGCTAGGTGGTCTACGGT 61.029 60.000 0.00 0.00 0.00 4.83
3558 4656 0.322816 TCGCTAGGTGGTCTACGGTT 60.323 55.000 0.00 0.00 0.00 4.44
3559 4657 0.100146 CGCTAGGTGGTCTACGGTTC 59.900 60.000 0.00 0.00 0.00 3.62
3560 4658 1.472188 GCTAGGTGGTCTACGGTTCT 58.528 55.000 0.00 0.00 0.00 3.01
3561 4659 1.134560 GCTAGGTGGTCTACGGTTCTG 59.865 57.143 0.00 0.00 0.00 3.02
3562 4660 1.749634 CTAGGTGGTCTACGGTTCTGG 59.250 57.143 0.00 0.00 0.00 3.86
3563 4661 0.113776 AGGTGGTCTACGGTTCTGGA 59.886 55.000 0.00 0.00 0.00 3.86
3564 4662 1.192428 GGTGGTCTACGGTTCTGGAT 58.808 55.000 0.00 0.00 0.00 3.41
3565 4663 1.134788 GGTGGTCTACGGTTCTGGATG 60.135 57.143 0.00 0.00 0.00 3.51
3566 4664 1.549170 GTGGTCTACGGTTCTGGATGT 59.451 52.381 0.00 0.00 0.00 3.06
3567 4665 2.756760 GTGGTCTACGGTTCTGGATGTA 59.243 50.000 0.00 0.00 0.00 2.29
3568 4666 3.194116 GTGGTCTACGGTTCTGGATGTAA 59.806 47.826 0.00 0.00 0.00 2.41
3569 4667 4.028131 TGGTCTACGGTTCTGGATGTAAT 58.972 43.478 0.00 0.00 0.00 1.89
3570 4668 4.468510 TGGTCTACGGTTCTGGATGTAATT 59.531 41.667 0.00 0.00 0.00 1.40
3571 4669 5.046159 TGGTCTACGGTTCTGGATGTAATTT 60.046 40.000 0.00 0.00 0.00 1.82
3572 4670 5.878669 GGTCTACGGTTCTGGATGTAATTTT 59.121 40.000 0.00 0.00 0.00 1.82
3573 4671 6.373495 GGTCTACGGTTCTGGATGTAATTTTT 59.627 38.462 0.00 0.00 0.00 1.94
3574 4672 7.550196 GGTCTACGGTTCTGGATGTAATTTTTA 59.450 37.037 0.00 0.00 0.00 1.52
3575 4673 9.106070 GTCTACGGTTCTGGATGTAATTTTTAT 57.894 33.333 0.00 0.00 0.00 1.40
3576 4674 9.675464 TCTACGGTTCTGGATGTAATTTTTATT 57.325 29.630 0.00 0.00 0.00 1.40
3600 4698 5.376854 TTTCTAGTGTCCGTTGTACTACC 57.623 43.478 1.76 0.00 0.00 3.18
3601 4699 4.019792 TCTAGTGTCCGTTGTACTACCA 57.980 45.455 1.76 0.00 0.00 3.25
3602 4700 4.592942 TCTAGTGTCCGTTGTACTACCAT 58.407 43.478 1.76 0.00 0.00 3.55
3603 4701 3.587797 AGTGTCCGTTGTACTACCATG 57.412 47.619 1.76 0.00 0.00 3.66
3604 4702 3.159472 AGTGTCCGTTGTACTACCATGA 58.841 45.455 0.00 0.00 0.00 3.07
3605 4703 3.767673 AGTGTCCGTTGTACTACCATGAT 59.232 43.478 0.00 0.00 0.00 2.45
3606 4704 4.222145 AGTGTCCGTTGTACTACCATGATT 59.778 41.667 0.00 0.00 0.00 2.57
3607 4705 4.328983 GTGTCCGTTGTACTACCATGATTG 59.671 45.833 0.00 0.00 0.00 2.67
3608 4706 4.221041 TGTCCGTTGTACTACCATGATTGA 59.779 41.667 0.00 0.00 0.00 2.57
3609 4707 5.172934 GTCCGTTGTACTACCATGATTGAA 58.827 41.667 0.00 0.00 0.00 2.69
3610 4708 5.291128 GTCCGTTGTACTACCATGATTGAAG 59.709 44.000 0.00 0.00 0.00 3.02
3611 4709 5.186215 TCCGTTGTACTACCATGATTGAAGA 59.814 40.000 0.00 0.00 0.00 2.87
3612 4710 6.049149 CCGTTGTACTACCATGATTGAAGAT 58.951 40.000 0.00 0.00 0.00 2.40
3613 4711 6.018751 CCGTTGTACTACCATGATTGAAGATG 60.019 42.308 0.00 0.00 0.00 2.90
3614 4712 6.756542 CGTTGTACTACCATGATTGAAGATGA 59.243 38.462 0.00 0.00 0.00 2.92
3615 4713 7.277760 CGTTGTACTACCATGATTGAAGATGAA 59.722 37.037 0.00 0.00 0.00 2.57
3616 4714 9.113838 GTTGTACTACCATGATTGAAGATGAAT 57.886 33.333 0.00 0.00 0.00 2.57
3618 4716 9.987272 TGTACTACCATGATTGAAGATGAATAG 57.013 33.333 0.00 0.00 0.00 1.73
3624 4722 9.636789 ACCATGATTGAAGATGAATAGATTGAA 57.363 29.630 0.00 0.00 0.00 2.69
3634 4732 9.846248 AAGATGAATAGATTGAAAGTTTTTCCG 57.154 29.630 0.00 0.00 0.00 4.30
3635 4733 9.231297 AGATGAATAGATTGAAAGTTTTTCCGA 57.769 29.630 0.00 0.00 0.00 4.55
3636 4734 9.840427 GATGAATAGATTGAAAGTTTTTCCGAA 57.160 29.630 0.00 0.00 0.00 4.30
3684 4789 0.904649 CCTGCTGGTGTCCACATCTA 59.095 55.000 0.51 0.00 0.00 1.98
3759 4880 6.690098 GTGTACGGTGAACATAGTACTACATG 59.310 42.308 4.31 4.36 39.87 3.21
3778 4899 4.903010 AACAACGCCGCACCTCGT 62.903 61.111 0.00 0.00 41.06 4.18
3781 4902 3.367743 AACGCCGCACCTCGTCTA 61.368 61.111 0.00 0.00 38.03 2.59
3782 4903 2.922950 AACGCCGCACCTCGTCTAA 61.923 57.895 0.00 0.00 38.03 2.10
3783 4904 2.879462 CGCCGCACCTCGTCTAAC 60.879 66.667 0.00 0.00 36.19 2.34
3784 4905 2.260434 GCCGCACCTCGTCTAACA 59.740 61.111 0.00 0.00 36.19 2.41
3785 4906 1.805945 GCCGCACCTCGTCTAACAG 60.806 63.158 0.00 0.00 36.19 3.16
3786 4907 1.880894 CCGCACCTCGTCTAACAGA 59.119 57.895 0.00 0.00 36.19 3.41
3787 4908 0.456312 CCGCACCTCGTCTAACAGAC 60.456 60.000 0.00 0.00 41.71 3.51
3800 4921 2.997315 CAGACGGAGACTGGGCCA 60.997 66.667 5.85 5.85 45.84 5.36
3801 4922 2.681778 AGACGGAGACTGGGCCAG 60.682 66.667 31.62 31.62 37.52 4.85
3802 4923 3.775654 GACGGAGACTGGGCCAGG 61.776 72.222 35.34 20.33 35.51 4.45
3803 4924 4.640690 ACGGAGACTGGGCCAGGT 62.641 66.667 35.34 23.19 35.51 4.00
3804 4925 3.322466 CGGAGACTGGGCCAGGTT 61.322 66.667 35.34 23.37 35.51 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.461961 CCATCGGGTCCTCTCAAGAC 59.538 60.000 0.00 0.00 0.00 3.01
2 3 0.335019 TCCATCGGGTCCTCTCAAGA 59.665 55.000 0.00 0.00 34.93 3.02
3 4 1.418334 ATCCATCGGGTCCTCTCAAG 58.582 55.000 0.00 0.00 34.93 3.02
4 5 2.767644 TATCCATCGGGTCCTCTCAA 57.232 50.000 0.00 0.00 34.93 3.02
5 6 2.557676 GGATATCCATCGGGTCCTCTCA 60.558 54.545 17.34 0.00 35.64 3.27
6 7 2.104170 GGATATCCATCGGGTCCTCTC 58.896 57.143 17.34 0.00 35.64 3.20
7 8 1.433199 TGGATATCCATCGGGTCCTCT 59.567 52.381 20.98 0.00 42.01 3.69
8 9 1.938585 TGGATATCCATCGGGTCCTC 58.061 55.000 20.98 0.00 42.01 3.71
9 10 2.415983 TTGGATATCCATCGGGTCCT 57.584 50.000 25.07 0.00 46.97 3.85
11 12 2.356125 CCCATTGGATATCCATCGGGTC 60.356 54.545 32.88 7.40 46.97 4.46
12 13 1.635487 CCCATTGGATATCCATCGGGT 59.365 52.381 32.88 15.44 46.97 5.28
14 15 4.454678 CATACCCATTGGATATCCATCGG 58.545 47.826 25.07 24.51 46.97 4.18
16 17 5.715439 TCCATACCCATTGGATATCCATC 57.285 43.478 25.07 0.00 46.97 3.51
42 43 1.949525 GACCATGTCCAAATCCGATGG 59.050 52.381 0.00 0.00 39.66 3.51
44 45 3.582998 ATGACCATGTCCAAATCCGAT 57.417 42.857 0.00 0.00 0.00 4.18
45 46 4.495690 TTATGACCATGTCCAAATCCGA 57.504 40.909 0.00 0.00 0.00 4.55
47 48 7.222611 CGAAAAATTATGACCATGTCCAAATCC 59.777 37.037 0.00 0.00 0.00 3.01
49 50 6.534793 GCGAAAAATTATGACCATGTCCAAAT 59.465 34.615 0.00 0.00 0.00 2.32
51 52 5.406649 GCGAAAAATTATGACCATGTCCAA 58.593 37.500 0.00 0.00 0.00 3.53
53 54 4.359706 GGCGAAAAATTATGACCATGTCC 58.640 43.478 0.00 0.00 0.00 4.02
55 56 3.766591 TGGGCGAAAAATTATGACCATGT 59.233 39.130 0.00 0.00 0.00 3.21
57 58 4.202243 CCATGGGCGAAAAATTATGACCAT 60.202 41.667 2.85 0.00 37.93 3.55
59 60 3.383185 TCCATGGGCGAAAAATTATGACC 59.617 43.478 13.02 0.00 0.00 4.02
60 61 4.647424 TCCATGGGCGAAAAATTATGAC 57.353 40.909 13.02 0.00 0.00 3.06
61 62 7.537596 AATATCCATGGGCGAAAAATTATGA 57.462 32.000 13.02 0.00 0.00 2.15
62 63 7.871973 TGAAATATCCATGGGCGAAAAATTATG 59.128 33.333 13.02 0.00 0.00 1.90
64 65 7.353414 TGAAATATCCATGGGCGAAAAATTA 57.647 32.000 13.02 0.00 0.00 1.40
65 66 6.232581 TGAAATATCCATGGGCGAAAAATT 57.767 33.333 13.02 0.00 0.00 1.82
67 68 5.599732 CATGAAATATCCATGGGCGAAAAA 58.400 37.500 13.02 0.00 38.12 1.94
69 70 4.852134 CATGAAATATCCATGGGCGAAA 57.148 40.909 13.02 0.00 38.12 3.46
76 77 4.159693 CAGCCCATCCATGAAATATCCATG 59.840 45.833 0.00 9.78 40.66 3.66
78 79 3.500836 CCAGCCCATCCATGAAATATCCA 60.501 47.826 0.00 0.00 0.00 3.41
79 80 3.094572 CCAGCCCATCCATGAAATATCC 58.905 50.000 0.00 0.00 0.00 2.59
81 82 2.723563 TCCCAGCCCATCCATGAAATAT 59.276 45.455 0.00 0.00 0.00 1.28
83 84 0.935942 TCCCAGCCCATCCATGAAAT 59.064 50.000 0.00 0.00 0.00 2.17
84 85 0.033208 GTCCCAGCCCATCCATGAAA 60.033 55.000 0.00 0.00 0.00 2.69
85 86 0.920763 AGTCCCAGCCCATCCATGAA 60.921 55.000 0.00 0.00 0.00 2.57
86 87 1.308128 AGTCCCAGCCCATCCATGA 60.308 57.895 0.00 0.00 0.00 3.07
88 89 3.065787 GCAGTCCCAGCCCATCCAT 62.066 63.158 0.00 0.00 0.00 3.41
89 90 3.731728 GCAGTCCCAGCCCATCCA 61.732 66.667 0.00 0.00 0.00 3.41
90 91 4.512914 GGCAGTCCCAGCCCATCC 62.513 72.222 0.00 0.00 46.50 3.51
96 97 0.322816 TTCATGAAGGCAGTCCCAGC 60.323 55.000 3.38 0.00 35.39 4.85
99 100 2.555757 GCATATTCATGAAGGCAGTCCC 59.444 50.000 14.54 0.00 33.67 4.46
100 101 3.216800 TGCATATTCATGAAGGCAGTCC 58.783 45.455 21.39 5.94 33.67 3.85
101 102 6.754702 ATATGCATATTCATGAAGGCAGTC 57.245 37.500 26.08 11.20 34.43 3.51
103 104 8.678593 ATCTATATGCATATTCATGAAGGCAG 57.321 34.615 23.71 17.40 34.43 4.85
104 105 9.470399 AAATCTATATGCATATTCATGAAGGCA 57.530 29.630 23.71 25.08 33.67 4.75
105 106 9.731819 CAAATCTATATGCATATTCATGAAGGC 57.268 33.333 23.71 16.46 33.67 4.35
119 120 9.846248 GGGTTGAACAATATCAAATCTATATGC 57.154 33.333 0.00 0.00 40.76 3.14
123 124 8.924511 ATCGGGTTGAACAATATCAAATCTAT 57.075 30.769 0.00 0.00 40.76 1.98
124 125 7.444183 GGATCGGGTTGAACAATATCAAATCTA 59.556 37.037 0.00 0.00 40.76 1.98
125 126 6.263168 GGATCGGGTTGAACAATATCAAATCT 59.737 38.462 0.00 0.00 40.76 2.40
126 127 6.039270 TGGATCGGGTTGAACAATATCAAATC 59.961 38.462 0.00 0.00 40.76 2.17
129 130 4.849518 TGGATCGGGTTGAACAATATCAA 58.150 39.130 0.00 0.00 36.99 2.57
131 132 5.449999 GGTTTGGATCGGGTTGAACAATATC 60.450 44.000 0.00 0.00 30.67 1.63
132 133 4.401202 GGTTTGGATCGGGTTGAACAATAT 59.599 41.667 0.00 0.00 30.67 1.28
133 134 3.759618 GGTTTGGATCGGGTTGAACAATA 59.240 43.478 0.00 0.00 30.67 1.90
135 136 1.957877 GGTTTGGATCGGGTTGAACAA 59.042 47.619 0.00 0.00 0.00 2.83
136 137 1.611519 GGTTTGGATCGGGTTGAACA 58.388 50.000 0.00 0.00 0.00 3.18
137 138 0.885879 GGGTTTGGATCGGGTTGAAC 59.114 55.000 0.00 0.00 0.00 3.18
138 139 0.606944 CGGGTTTGGATCGGGTTGAA 60.607 55.000 0.00 0.00 0.00 2.69
140 141 1.003112 TCGGGTTTGGATCGGGTTG 60.003 57.895 0.00 0.00 0.00 3.77
141 142 1.002990 GTCGGGTTTGGATCGGGTT 60.003 57.895 0.00 0.00 0.00 4.11
145 146 0.393808 AATGGGTCGGGTTTGGATCG 60.394 55.000 0.00 0.00 0.00 3.69
147 148 0.970427 GCAATGGGTCGGGTTTGGAT 60.970 55.000 0.00 0.00 0.00 3.41
148 149 1.605165 GCAATGGGTCGGGTTTGGA 60.605 57.895 0.00 0.00 0.00 3.53
149 150 2.645192 GGCAATGGGTCGGGTTTGG 61.645 63.158 0.00 0.00 0.00 3.28
150 151 1.257055 ATGGCAATGGGTCGGGTTTG 61.257 55.000 0.00 0.00 0.00 2.93
151 152 0.970427 GATGGCAATGGGTCGGGTTT 60.970 55.000 0.00 0.00 0.00 3.27
152 153 1.379843 GATGGCAATGGGTCGGGTT 60.380 57.895 0.00 0.00 0.00 4.11
154 155 2.519302 GGATGGCAATGGGTCGGG 60.519 66.667 0.00 0.00 0.00 5.14
155 156 0.182537 TAAGGATGGCAATGGGTCGG 59.817 55.000 0.00 0.00 0.00 4.79
156 157 1.597742 CTAAGGATGGCAATGGGTCG 58.402 55.000 0.00 0.00 0.00 4.79
157 158 1.133668 AGCTAAGGATGGCAATGGGTC 60.134 52.381 0.00 0.00 35.08 4.46
159 160 1.144503 AGAGCTAAGGATGGCAATGGG 59.855 52.381 0.00 0.00 35.08 4.00
160 161 2.653234 AGAGCTAAGGATGGCAATGG 57.347 50.000 0.00 0.00 35.08 3.16
161 162 3.496130 CGTTAGAGCTAAGGATGGCAATG 59.504 47.826 0.00 0.00 35.08 2.82
163 164 2.500098 ACGTTAGAGCTAAGGATGGCAA 59.500 45.455 14.69 0.00 35.08 4.52
165 166 2.892784 ACGTTAGAGCTAAGGATGGC 57.107 50.000 14.69 0.00 35.56 4.40
166 167 4.755411 TGAAACGTTAGAGCTAAGGATGG 58.245 43.478 14.69 0.00 35.56 3.51
167 168 6.291849 CGAATGAAACGTTAGAGCTAAGGATG 60.292 42.308 14.69 0.00 35.56 3.51
168 169 5.749109 CGAATGAAACGTTAGAGCTAAGGAT 59.251 40.000 14.69 2.71 35.56 3.24
169 170 5.100259 CGAATGAAACGTTAGAGCTAAGGA 58.900 41.667 14.69 0.00 35.56 3.36
170 171 4.259850 GCGAATGAAACGTTAGAGCTAAGG 60.260 45.833 0.00 8.05 37.07 2.69
171 172 4.563184 AGCGAATGAAACGTTAGAGCTAAG 59.437 41.667 0.00 0.00 0.00 2.18
172 173 4.491676 AGCGAATGAAACGTTAGAGCTAA 58.508 39.130 0.00 0.00 0.00 3.09
173 174 4.103357 GAGCGAATGAAACGTTAGAGCTA 58.897 43.478 0.00 0.00 32.14 3.32
174 175 2.924290 GAGCGAATGAAACGTTAGAGCT 59.076 45.455 0.00 7.25 34.92 4.09
175 176 2.029365 GGAGCGAATGAAACGTTAGAGC 59.971 50.000 0.00 2.13 0.00 4.09
176 177 2.279136 CGGAGCGAATGAAACGTTAGAG 59.721 50.000 0.00 0.00 0.00 2.43
178 179 1.323534 CCGGAGCGAATGAAACGTTAG 59.676 52.381 0.00 0.00 0.00 2.34
179 180 1.067706 TCCGGAGCGAATGAAACGTTA 60.068 47.619 0.00 0.00 0.00 3.18
181 182 0.736325 CTCCGGAGCGAATGAAACGT 60.736 55.000 20.67 0.00 0.00 3.99
182 183 1.421410 CCTCCGGAGCGAATGAAACG 61.421 60.000 26.87 4.20 0.00 3.60
188 1066 4.162690 GGCACCTCCGGAGCGAAT 62.163 66.667 26.87 7.94 40.13 3.34
276 1155 7.398829 TGGCCTAGTGTAATTTTTGAGATGTA 58.601 34.615 3.32 0.00 0.00 2.29
288 1167 8.886369 TGTTGGTATATTATGGCCTAGTGTAAT 58.114 33.333 3.32 4.00 0.00 1.89
365 1244 0.443869 AGACGTGATTGCGCAATGTC 59.556 50.000 38.34 33.47 34.88 3.06
456 1335 2.102070 ACCAAACGCGGTATTGATCA 57.898 45.000 12.47 0.00 37.57 2.92
557 1436 8.978539 GTGGAGTTCATCTTTTAAAATGGTTTC 58.021 33.333 0.09 0.00 0.00 2.78
572 1451 3.636764 ACTTTTTGGGTGTGGAGTTCATC 59.363 43.478 0.00 0.00 0.00 2.92
595 1474 1.226717 TGTTTGGCGGCGTTTTGTC 60.227 52.632 9.37 0.00 0.00 3.18
644 1524 3.414700 CTTCGTGCGCCACCAGTC 61.415 66.667 4.18 0.00 0.00 3.51
663 1543 4.280494 CGATCGGGCCACGTAGGG 62.280 72.222 7.38 0.00 44.69 3.53
741 1624 0.813821 TCAGTCAGCGAGGTGATCTG 59.186 55.000 19.13 19.13 31.88 2.90
759 1642 2.936007 TCCGGGGAGGAGGATCTC 59.064 66.667 0.00 0.00 45.98 2.75
771 1654 1.486310 TGATGAGGATTTGACTCCGGG 59.514 52.381 0.00 0.00 40.46 5.73
773 1656 2.208431 GCTGATGAGGATTTGACTCCG 58.792 52.381 0.00 0.00 40.46 4.63
825 1708 1.356938 GTTCTGGACGGACGGAAATC 58.643 55.000 4.70 0.00 37.48 2.17
878 1764 0.179012 ACGGGAACAACGGGAACAAT 60.179 50.000 0.00 0.00 35.23 2.71
896 1782 0.949105 ATCGTCAACTCACGGGCAAC 60.949 55.000 0.00 0.00 40.35 4.17
897 1783 0.604073 TATCGTCAACTCACGGGCAA 59.396 50.000 0.00 0.00 40.35 4.52
898 1784 0.172578 CTATCGTCAACTCACGGGCA 59.827 55.000 0.00 0.00 40.35 5.36
899 1785 1.146358 GCTATCGTCAACTCACGGGC 61.146 60.000 0.00 0.00 40.35 6.13
900 1786 0.456221 AGCTATCGTCAACTCACGGG 59.544 55.000 0.00 0.00 40.35 5.28
901 1787 1.135373 ACAGCTATCGTCAACTCACGG 60.135 52.381 0.00 0.00 40.35 4.94
902 1788 1.914051 CACAGCTATCGTCAACTCACG 59.086 52.381 0.00 0.00 41.36 4.35
903 1789 1.656095 GCACAGCTATCGTCAACTCAC 59.344 52.381 0.00 0.00 0.00 3.51
904 1790 1.272212 TGCACAGCTATCGTCAACTCA 59.728 47.619 0.00 0.00 0.00 3.41
905 1791 1.656095 GTGCACAGCTATCGTCAACTC 59.344 52.381 13.17 0.00 0.00 3.01
1014 1900 2.971095 ATCTCGGACCGGGCGATGTA 62.971 60.000 15.25 0.00 0.00 2.29
1023 1909 1.006805 GCAGATGGATCTCGGACCG 60.007 63.158 7.84 7.84 34.22 4.79
1024 1910 0.316841 GAGCAGATGGATCTCGGACC 59.683 60.000 0.00 0.00 34.22 4.46
1025 1911 0.316841 GGAGCAGATGGATCTCGGAC 59.683 60.000 0.00 0.00 34.22 4.79
1026 1912 1.175347 CGGAGCAGATGGATCTCGGA 61.175 60.000 0.00 0.00 34.22 4.55
1055 1941 1.739562 GCACCAGAGCACCGAGAAG 60.740 63.158 0.00 0.00 0.00 2.85
1100 1986 0.103208 CCTCCGAATTCTCCTGGTCG 59.897 60.000 3.52 0.00 0.00 4.79
1124 2012 0.594110 CAGCTAGCTAGTACCCTCGC 59.406 60.000 18.86 5.95 0.00 5.03
1131 2019 3.977312 TCCAAACTCCAGCTAGCTAGTA 58.023 45.455 18.86 4.77 0.00 1.82
1181 2071 2.027169 CGCCCGGTAGGAATCGAC 59.973 66.667 0.00 0.00 41.02 4.20
1259 2149 2.228822 CGGCAAAGTGGCTTACAAGAAT 59.771 45.455 0.09 0.00 41.25 2.40
1284 2178 5.918608 AGATCCGCCGCATAAATCTAATAT 58.081 37.500 0.00 0.00 0.00 1.28
1286 2180 4.207891 AGATCCGCCGCATAAATCTAAT 57.792 40.909 0.00 0.00 0.00 1.73
1289 2183 2.146342 CAAGATCCGCCGCATAAATCT 58.854 47.619 0.00 0.00 0.00 2.40
1314 2208 4.497340 GCCAACGATTCAAGAACACTCAAA 60.497 41.667 0.00 0.00 0.00 2.69
1316 2210 2.548057 GCCAACGATTCAAGAACACTCA 59.452 45.455 0.00 0.00 0.00 3.41
1317 2216 2.808543 AGCCAACGATTCAAGAACACTC 59.191 45.455 0.00 0.00 0.00 3.51
1318 2217 2.851195 AGCCAACGATTCAAGAACACT 58.149 42.857 0.00 0.00 0.00 3.55
1319 2218 4.742438 TTAGCCAACGATTCAAGAACAC 57.258 40.909 0.00 0.00 0.00 3.32
1324 2223 4.963276 TGGAATTAGCCAACGATTCAAG 57.037 40.909 0.00 0.00 34.31 3.02
2127 3026 1.317613 ATGCGTTTTCTCACCTGCAA 58.682 45.000 0.00 0.00 35.78 4.08
2175 3113 1.037493 AAAAGGGCCACGTTTCCTTC 58.963 50.000 6.18 0.00 39.72 3.46
2178 3116 1.365999 CCAAAAGGGCCACGTTTCC 59.634 57.895 6.18 0.00 33.90 3.13
2194 3132 1.004320 ATCTACCGTGCGTTTGCCA 60.004 52.632 0.00 0.00 41.78 4.92
2215 3176 0.625849 CAGCCTGGTCCCTGGTTTAT 59.374 55.000 10.54 0.00 37.37 1.40
2216 3177 1.497309 CCAGCCTGGTCCCTGGTTTA 61.497 60.000 1.39 0.00 42.87 2.01
2218 3179 3.260100 CCAGCCTGGTCCCTGGTT 61.260 66.667 1.39 2.19 42.87 3.67
2290 3311 6.131544 ACGTCCAATTTCCTTGTATATTGC 57.868 37.500 0.00 0.00 32.61 3.56
2317 3341 1.404851 GCAAGAGGACGAAAGCTAGCT 60.405 52.381 12.68 12.68 0.00 3.32
2444 3476 2.300152 GTCTTCTGACATCACCTCACCA 59.700 50.000 0.00 0.00 42.48 4.17
2446 3478 3.006323 ACAGTCTTCTGACATCACCTCAC 59.994 47.826 2.17 0.00 45.20 3.51
2447 3479 3.234353 ACAGTCTTCTGACATCACCTCA 58.766 45.455 2.17 0.00 45.20 3.86
2456 3493 5.107951 GCACGTTAGTTTACAGTCTTCTGAC 60.108 44.000 2.17 0.00 43.76 3.51
2462 3499 3.360249 ACGCACGTTAGTTTACAGTCT 57.640 42.857 0.00 0.00 0.00 3.24
2466 3503 2.928757 ACACAACGCACGTTAGTTTACA 59.071 40.909 8.26 0.00 36.46 2.41
2468 3505 5.903764 ATTACACAACGCACGTTAGTTTA 57.096 34.783 8.26 4.63 36.46 2.01
2471 3508 4.799419 AAATTACACAACGCACGTTAGT 57.201 36.364 8.26 12.23 36.46 2.24
2479 3516 2.096958 GGCTGCAAAAATTACACAACGC 60.097 45.455 0.50 0.00 0.00 4.84
2480 3517 3.119291 TGGCTGCAAAAATTACACAACG 58.881 40.909 0.50 0.00 0.00 4.10
2485 3529 5.469421 CCTTGAAATGGCTGCAAAAATTACA 59.531 36.000 0.50 0.00 0.00 2.41
2486 3530 5.930405 CCTTGAAATGGCTGCAAAAATTAC 58.070 37.500 0.50 0.00 0.00 1.89
2514 3559 4.567318 GCTTTCCCCATCTGCGAT 57.433 55.556 0.00 0.00 0.00 4.58
2522 3567 1.072505 GTCTTGTCCGCTTTCCCCA 59.927 57.895 0.00 0.00 0.00 4.96
2574 3619 2.020694 GCCATGGAGGACATCACCTTG 61.021 57.143 18.40 0.00 40.73 3.61
2590 3635 2.370445 CCACCTTCCTCTCGGCCAT 61.370 63.158 2.24 0.00 0.00 4.40
2684 3737 0.879765 ACTACACGACCAAGACGAGG 59.120 55.000 0.00 0.00 34.70 4.63
2779 3835 5.910166 GTGACATGTGCTAAGTAGACTATCG 59.090 44.000 1.15 0.00 0.00 2.92
2817 3873 6.534475 AAAAGGGAAAAAGTTTAACCGTCT 57.466 33.333 6.64 0.00 0.00 4.18
2818 3874 7.044117 CGTAAAAAGGGAAAAAGTTTAACCGTC 60.044 37.037 6.64 0.00 0.00 4.79
2819 3875 6.751425 CGTAAAAAGGGAAAAAGTTTAACCGT 59.249 34.615 0.00 0.00 0.00 4.83
2820 3876 6.971756 TCGTAAAAAGGGAAAAAGTTTAACCG 59.028 34.615 0.00 0.00 0.00 4.44
2836 3892 9.698617 GCACTATAGTTTAACCATCGTAAAAAG 57.301 33.333 1.56 0.00 0.00 2.27
2842 3900 6.982724 GGTAAGCACTATAGTTTAACCATCGT 59.017 38.462 1.56 0.00 0.00 3.73
2905 3963 1.531423 TTCGAGGTAGAGAAGCACGT 58.469 50.000 0.00 0.00 40.06 4.49
2948 4006 2.096248 TGGGTGTGCTTTCGACTTTTT 58.904 42.857 0.00 0.00 0.00 1.94
2949 4007 1.757682 TGGGTGTGCTTTCGACTTTT 58.242 45.000 0.00 0.00 0.00 2.27
2950 4008 1.608590 CATGGGTGTGCTTTCGACTTT 59.391 47.619 0.00 0.00 0.00 2.66
2951 4009 1.238439 CATGGGTGTGCTTTCGACTT 58.762 50.000 0.00 0.00 0.00 3.01
2952 4010 0.606401 CCATGGGTGTGCTTTCGACT 60.606 55.000 2.85 0.00 0.00 4.18
2953 4011 0.605319 TCCATGGGTGTGCTTTCGAC 60.605 55.000 13.02 0.00 0.00 4.20
2954 4012 0.327924 ATCCATGGGTGTGCTTTCGA 59.672 50.000 13.02 0.00 0.00 3.71
2955 4013 0.452987 CATCCATGGGTGTGCTTTCG 59.547 55.000 17.54 0.00 0.00 3.46
2956 4014 0.174162 GCATCCATGGGTGTGCTTTC 59.826 55.000 25.82 4.56 34.50 2.62
2957 4015 0.251922 AGCATCCATGGGTGTGCTTT 60.252 50.000 25.82 9.63 40.56 3.51
2958 4016 0.968901 CAGCATCCATGGGTGTGCTT 60.969 55.000 25.82 13.15 41.11 3.91
2959 4017 1.379443 CAGCATCCATGGGTGTGCT 60.379 57.895 25.82 25.34 42.67 4.40
2960 4018 3.072486 GCAGCATCCATGGGTGTGC 62.072 63.158 26.22 26.22 36.34 4.57
2961 4019 1.379443 AGCAGCATCCATGGGTGTG 60.379 57.895 25.82 21.35 36.21 3.82
2962 4020 1.077212 GAGCAGCATCCATGGGTGT 60.077 57.895 25.82 10.33 36.21 4.16
2963 4021 1.101635 CAGAGCAGCATCCATGGGTG 61.102 60.000 21.48 21.48 36.85 4.61
2964 4022 1.226542 CAGAGCAGCATCCATGGGT 59.773 57.895 13.02 0.00 0.00 4.51
2965 4023 0.395311 AACAGAGCAGCATCCATGGG 60.395 55.000 13.02 0.00 0.00 4.00
2966 4024 1.022735 GAACAGAGCAGCATCCATGG 58.977 55.000 4.97 4.97 0.00 3.66
2967 4025 1.022735 GGAACAGAGCAGCATCCATG 58.977 55.000 0.00 0.00 0.00 3.66
2968 4026 0.622136 TGGAACAGAGCAGCATCCAT 59.378 50.000 0.00 0.00 35.33 3.41
2969 4027 2.068915 TGGAACAGAGCAGCATCCA 58.931 52.632 0.00 0.00 37.83 3.41
3120 4178 6.643388 TCACTGCTAAGAAAGAATATCAGCA 58.357 36.000 0.00 0.00 36.25 4.41
3125 4183 5.907207 TCGCTCACTGCTAAGAAAGAATAT 58.093 37.500 0.00 0.00 40.11 1.28
3128 4186 3.005897 ACTCGCTCACTGCTAAGAAAGAA 59.994 43.478 0.00 0.00 40.11 2.52
3134 4192 4.493220 GCATTAAACTCGCTCACTGCTAAG 60.493 45.833 0.00 0.00 40.11 2.18
3142 4200 2.096466 CACGTTGCATTAAACTCGCTCA 60.096 45.455 0.00 0.00 0.00 4.26
3176 4234 0.099082 GGACCAGACGAAGAGTAGCG 59.901 60.000 0.00 0.00 0.00 4.26
3178 4236 2.480416 GCATGGACCAGACGAAGAGTAG 60.480 54.545 0.00 0.00 0.00 2.57
3186 4244 0.392863 TTGGATGCATGGACCAGACG 60.393 55.000 2.46 0.00 35.08 4.18
3223 4282 1.457009 GCAGGTAGTCCTAGGCCGAG 61.457 65.000 5.78 5.78 43.07 4.63
3224 4283 1.455217 GCAGGTAGTCCTAGGCCGA 60.455 63.158 2.96 0.00 43.07 5.54
3225 4284 1.455959 AGCAGGTAGTCCTAGGCCG 60.456 63.158 2.96 0.00 43.07 6.13
3226 4285 2.034048 GCAGCAGGTAGTCCTAGGCC 62.034 65.000 2.96 0.00 43.07 5.19
3227 4286 1.045911 AGCAGCAGGTAGTCCTAGGC 61.046 60.000 2.96 0.00 43.07 3.93
3228 4287 0.749649 CAGCAGCAGGTAGTCCTAGG 59.250 60.000 0.82 0.82 43.07 3.02
3251 4313 0.109319 GGCAATGGCACGGTTACAAG 60.109 55.000 0.58 0.00 43.71 3.16
3252 4314 1.857318 CGGCAATGGCACGGTTACAA 61.857 55.000 7.75 0.00 43.71 2.41
3286 4359 2.771943 AGGTCTCATTAGATCGGCCAAA 59.228 45.455 2.24 0.00 37.97 3.28
3322 4395 0.413832 ACTCCAGTTGGCTCCCTCTA 59.586 55.000 0.00 0.00 34.44 2.43
3453 4551 3.749088 CGGGCAAACATTGTTGTAGTAGA 59.251 43.478 2.13 0.00 34.06 2.59
3454 4552 3.119990 CCGGGCAAACATTGTTGTAGTAG 60.120 47.826 2.13 0.00 34.06 2.57
3456 4554 1.611491 CCGGGCAAACATTGTTGTAGT 59.389 47.619 2.13 0.00 34.06 2.73
3458 4556 0.315568 GCCGGGCAAACATTGTTGTA 59.684 50.000 15.62 0.00 34.06 2.41
3459 4557 1.068921 GCCGGGCAAACATTGTTGT 59.931 52.632 15.62 0.00 37.82 3.32
3460 4558 0.667184 GAGCCGGGCAAACATTGTTG 60.667 55.000 23.09 0.00 0.00 3.33
3461 4559 0.827507 AGAGCCGGGCAAACATTGTT 60.828 50.000 23.09 0.00 0.00 2.83
3462 4560 1.228552 AGAGCCGGGCAAACATTGT 60.229 52.632 23.09 0.00 0.00 2.71
3467 4565 3.423154 CGACAGAGCCGGGCAAAC 61.423 66.667 23.09 12.00 0.00 2.93
3469 4567 4.069232 CTCGACAGAGCCGGGCAA 62.069 66.667 23.09 0.00 37.73 4.52
3473 4571 3.522731 CTCCCTCGACAGAGCCGG 61.523 72.222 0.00 0.00 43.05 6.13
3474 4572 3.522731 CCTCCCTCGACAGAGCCG 61.523 72.222 2.04 0.00 43.05 5.52
3475 4573 3.151022 CCCTCCCTCGACAGAGCC 61.151 72.222 2.04 0.00 43.05 4.70
3476 4574 3.151022 CCCCTCCCTCGACAGAGC 61.151 72.222 2.04 0.00 43.05 4.09
3477 4575 3.151022 GCCCCTCCCTCGACAGAG 61.151 72.222 0.75 0.75 43.98 3.35
3479 4577 2.978298 TATCGCCCCTCCCTCGACAG 62.978 65.000 0.00 0.00 34.92 3.51
3480 4578 2.577020 TTATCGCCCCTCCCTCGACA 62.577 60.000 0.00 0.00 34.92 4.35
3481 4579 1.831286 TTATCGCCCCTCCCTCGAC 60.831 63.158 0.00 0.00 34.92 4.20
3482 4580 1.831286 GTTATCGCCCCTCCCTCGA 60.831 63.158 0.00 0.00 36.63 4.04
3483 4581 2.088674 CTGTTATCGCCCCTCCCTCG 62.089 65.000 0.00 0.00 0.00 4.63
3484 4582 1.749033 CTGTTATCGCCCCTCCCTC 59.251 63.158 0.00 0.00 0.00 4.30
3485 4583 2.444256 GCTGTTATCGCCCCTCCCT 61.444 63.158 0.00 0.00 0.00 4.20
3486 4584 2.111251 GCTGTTATCGCCCCTCCC 59.889 66.667 0.00 0.00 0.00 4.30
3487 4585 2.280186 CGCTGTTATCGCCCCTCC 60.280 66.667 0.00 0.00 0.00 4.30
3488 4586 2.280186 CCGCTGTTATCGCCCCTC 60.280 66.667 0.00 0.00 0.00 4.30
3489 4587 4.547367 GCCGCTGTTATCGCCCCT 62.547 66.667 0.00 0.00 0.00 4.79
3511 4609 2.734673 GCACTGAAGCGAGCCGAAG 61.735 63.158 0.00 0.00 0.00 3.79
3512 4610 2.715532 AAGCACTGAAGCGAGCCGAA 62.716 55.000 0.00 0.00 40.15 4.30
3513 4611 3.226429 AAGCACTGAAGCGAGCCGA 62.226 57.895 0.00 0.00 40.15 5.54
3514 4612 2.740055 AAGCACTGAAGCGAGCCG 60.740 61.111 0.00 0.00 40.15 5.52
3515 4613 0.670546 TACAAGCACTGAAGCGAGCC 60.671 55.000 0.00 0.00 40.15 4.70
3516 4614 0.718343 CTACAAGCACTGAAGCGAGC 59.282 55.000 0.00 0.00 40.15 5.03
3517 4615 1.989165 GACTACAAGCACTGAAGCGAG 59.011 52.381 0.00 0.00 40.15 5.03
3518 4616 1.666023 CGACTACAAGCACTGAAGCGA 60.666 52.381 0.00 0.00 40.15 4.93
3519 4617 0.710567 CGACTACAAGCACTGAAGCG 59.289 55.000 0.00 0.00 40.15 4.68
3520 4618 1.721926 GACGACTACAAGCACTGAAGC 59.278 52.381 0.00 0.00 0.00 3.86
3521 4619 1.979469 CGACGACTACAAGCACTGAAG 59.021 52.381 0.00 0.00 0.00 3.02
3522 4620 1.929038 GCGACGACTACAAGCACTGAA 60.929 52.381 0.00 0.00 0.00 3.02
3523 4621 0.386858 GCGACGACTACAAGCACTGA 60.387 55.000 0.00 0.00 0.00 3.41
3524 4622 0.387367 AGCGACGACTACAAGCACTG 60.387 55.000 0.00 0.00 0.00 3.66
3525 4623 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
3526 4624 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
3527 4625 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
3528 4626 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
3529 4627 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
3530 4628 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
3531 4629 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
3532 4630 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
3533 4631 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
3534 4632 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
3535 4633 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
3536 4634 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
3537 4635 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
3538 4636 1.028868 ACCGTAGACCACCTAGCGAC 61.029 60.000 0.00 0.00 0.00 5.19
3539 4637 0.322816 AACCGTAGACCACCTAGCGA 60.323 55.000 0.00 0.00 0.00 4.93
3540 4638 0.100146 GAACCGTAGACCACCTAGCG 59.900 60.000 0.00 0.00 0.00 4.26
3541 4639 1.134560 CAGAACCGTAGACCACCTAGC 59.865 57.143 0.00 0.00 0.00 3.42
3542 4640 1.749634 CCAGAACCGTAGACCACCTAG 59.250 57.143 0.00 0.00 0.00 3.02
3543 4641 1.355381 TCCAGAACCGTAGACCACCTA 59.645 52.381 0.00 0.00 0.00 3.08
3544 4642 0.113776 TCCAGAACCGTAGACCACCT 59.886 55.000 0.00 0.00 0.00 4.00
3545 4643 1.134788 CATCCAGAACCGTAGACCACC 60.135 57.143 0.00 0.00 0.00 4.61
3546 4644 1.549170 ACATCCAGAACCGTAGACCAC 59.451 52.381 0.00 0.00 0.00 4.16
3547 4645 1.933021 ACATCCAGAACCGTAGACCA 58.067 50.000 0.00 0.00 0.00 4.02
3548 4646 4.667519 ATTACATCCAGAACCGTAGACC 57.332 45.455 0.00 0.00 0.00 3.85
3549 4647 6.980051 AAAATTACATCCAGAACCGTAGAC 57.020 37.500 0.00 0.00 0.00 2.59
3550 4648 9.675464 AATAAAAATTACATCCAGAACCGTAGA 57.325 29.630 0.00 0.00 0.00 2.59
3574 4672 8.193438 GGTAGTACAACGGACACTAGAAATAAT 58.807 37.037 2.06 0.00 0.00 1.28
3575 4673 7.176515 TGGTAGTACAACGGACACTAGAAATAA 59.823 37.037 2.06 0.00 0.00 1.40
3576 4674 6.658816 TGGTAGTACAACGGACACTAGAAATA 59.341 38.462 2.06 0.00 0.00 1.40
3577 4675 5.477984 TGGTAGTACAACGGACACTAGAAAT 59.522 40.000 2.06 0.00 0.00 2.17
3578 4676 4.826733 TGGTAGTACAACGGACACTAGAAA 59.173 41.667 2.06 0.00 0.00 2.52
3579 4677 4.397420 TGGTAGTACAACGGACACTAGAA 58.603 43.478 2.06 0.00 0.00 2.10
3580 4678 4.019792 TGGTAGTACAACGGACACTAGA 57.980 45.455 2.06 0.00 0.00 2.43
3581 4679 4.397103 TCATGGTAGTACAACGGACACTAG 59.603 45.833 2.06 0.00 0.00 2.57
3582 4680 4.334552 TCATGGTAGTACAACGGACACTA 58.665 43.478 2.06 0.00 0.00 2.74
3583 4681 3.159472 TCATGGTAGTACAACGGACACT 58.841 45.455 2.06 0.00 0.00 3.55
3584 4682 3.581024 TCATGGTAGTACAACGGACAC 57.419 47.619 2.06 0.00 0.00 3.67
3585 4683 4.221041 TCAATCATGGTAGTACAACGGACA 59.779 41.667 2.06 0.00 0.00 4.02
3586 4684 4.751060 TCAATCATGGTAGTACAACGGAC 58.249 43.478 2.06 0.00 0.00 4.79
3587 4685 5.186215 TCTTCAATCATGGTAGTACAACGGA 59.814 40.000 2.06 0.00 0.00 4.69
3588 4686 5.416083 TCTTCAATCATGGTAGTACAACGG 58.584 41.667 2.06 0.00 0.00 4.44
3589 4687 6.756542 TCATCTTCAATCATGGTAGTACAACG 59.243 38.462 2.06 0.00 0.00 4.10
3590 4688 8.492673 TTCATCTTCAATCATGGTAGTACAAC 57.507 34.615 2.06 0.00 0.00 3.32
3592 4690 9.987272 CTATTCATCTTCAATCATGGTAGTACA 57.013 33.333 2.06 0.00 0.00 2.90
3598 4696 9.636789 TTCAATCTATTCATCTTCAATCATGGT 57.363 29.630 0.00 0.00 0.00 3.55
3608 4706 9.846248 CGGAAAAACTTTCAATCTATTCATCTT 57.154 29.630 1.88 0.00 0.00 2.40
3609 4707 9.231297 TCGGAAAAACTTTCAATCTATTCATCT 57.769 29.630 1.88 0.00 0.00 2.90
3610 4708 9.840427 TTCGGAAAAACTTTCAATCTATTCATC 57.160 29.630 1.88 0.00 0.00 2.92
3640 4738 4.762251 AGCGTAAGGAGATGAAAGCTTTTT 59.238 37.500 14.05 4.13 29.16 1.94
3641 4739 4.154918 CAGCGTAAGGAGATGAAAGCTTTT 59.845 41.667 14.05 0.00 29.16 2.27
3677 4782 2.666508 CACCGTTCTTTCCGTAGATGTG 59.333 50.000 0.00 0.00 0.00 3.21
3684 4789 1.301479 GGAGCACCGTTCTTTCCGT 60.301 57.895 0.00 0.00 0.00 4.69
3759 4880 3.723348 GAGGTGCGGCGTTGTTCC 61.723 66.667 9.37 4.37 0.00 3.62
3778 4899 1.835494 CCCAGTCTCCGTCTGTTAGA 58.165 55.000 0.00 0.00 0.00 2.10
3779 4900 0.173708 GCCCAGTCTCCGTCTGTTAG 59.826 60.000 0.00 0.00 0.00 2.34
3780 4901 1.255667 GGCCCAGTCTCCGTCTGTTA 61.256 60.000 0.00 0.00 0.00 2.41
3781 4902 2.584391 GGCCCAGTCTCCGTCTGTT 61.584 63.158 0.00 0.00 0.00 3.16
3782 4903 2.997897 GGCCCAGTCTCCGTCTGT 60.998 66.667 0.00 0.00 0.00 3.41
3783 4904 2.997315 TGGCCCAGTCTCCGTCTG 60.997 66.667 0.00 0.00 0.00 3.51
3784 4905 2.681778 CTGGCCCAGTCTCCGTCT 60.682 66.667 1.39 0.00 0.00 4.18
3785 4906 3.775654 CCTGGCCCAGTCTCCGTC 61.776 72.222 10.47 0.00 0.00 4.79
3786 4907 4.640690 ACCTGGCCCAGTCTCCGT 62.641 66.667 10.47 0.00 0.00 4.69
3787 4908 3.322466 AACCTGGCCCAGTCTCCG 61.322 66.667 10.47 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.