Multiple sequence alignment - TraesCS2A01G321700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G321700 chr2A 100.000 3311 0 0 1 3311 551374381 551371071 0.000000e+00 6115.0
1 TraesCS2A01G321700 chr2A 87.261 628 40 20 943 1560 551451629 551451032 0.000000e+00 680.0
2 TraesCS2A01G321700 chr2A 84.615 702 66 15 2019 2710 551462117 551461448 0.000000e+00 660.0
3 TraesCS2A01G321700 chr2A 82.649 755 66 35 699 1425 551463454 551462737 2.830000e-170 608.0
4 TraesCS2A01G321700 chr2A 82.207 725 80 27 1997 2708 551481496 551480808 2.220000e-161 579.0
5 TraesCS2A01G321700 chr2A 82.021 762 59 33 720 1427 551469515 551468778 7.970000e-161 577.0
6 TraesCS2A01G321700 chr2A 87.800 500 31 16 865 1341 551482566 551482074 2.890000e-155 558.0
7 TraesCS2A01G321700 chr2A 84.041 589 52 18 2040 2603 551446910 551446339 2.260000e-146 529.0
8 TraesCS2A01G321700 chr2A 93.787 338 18 3 2019 2355 551468004 551467669 3.810000e-139 505.0
9 TraesCS2A01G321700 chr2A 97.321 112 3 0 721 832 551451853 551451742 1.210000e-44 191.0
10 TraesCS2A01G321700 chr2A 96.396 111 4 0 162 272 551463884 551463774 2.030000e-42 183.0
11 TraesCS2A01G321700 chr2A 90.598 117 5 4 162 272 551475335 551475219 2.060000e-32 150.0
12 TraesCS2A01G321700 chr2A 78.974 195 12 14 309 485 551463670 551463487 4.520000e-19 106.0
13 TraesCS2A01G321700 chr2A 94.545 55 3 0 312 366 551453656 551453602 5.890000e-13 86.1
14 TraesCS2A01G321700 chr2B 90.879 899 49 16 724 1609 513706274 513707152 0.000000e+00 1175.0
15 TraesCS2A01G321700 chr2B 83.145 795 75 31 1932 2708 513681361 513682114 0.000000e+00 671.0
16 TraesCS2A01G321700 chr2B 89.813 481 38 6 2378 2854 513708679 513709152 1.020000e-169 606.0
17 TraesCS2A01G321700 chr2B 82.797 715 66 19 2007 2710 513696506 513697174 1.320000e-163 586.0
18 TraesCS2A01G321700 chr2B 83.742 652 46 27 873 1502 513695206 513695819 2.230000e-156 562.0
19 TraesCS2A01G321700 chr2B 84.882 549 37 12 778 1287 513680599 513681140 2.280000e-141 512.0
20 TraesCS2A01G321700 chr2B 89.198 324 30 5 2991 3311 513709831 513710152 1.850000e-107 399.0
21 TraesCS2A01G321700 chr2B 85.305 279 26 8 307 572 513704861 513705137 1.170000e-69 274.0
22 TraesCS2A01G321700 chr2B 91.758 182 9 2 92 272 513704601 513704777 7.100000e-62 248.0
23 TraesCS2A01G321700 chr2B 87.568 185 17 4 91 269 513618696 513618880 3.350000e-50 209.0
24 TraesCS2A01G321700 chr2B 87.283 173 13 4 109 272 513693689 513693861 4.360000e-44 189.0
25 TraesCS2A01G321700 chr2B 90.361 83 7 1 1631 1713 513708441 513708522 1.260000e-19 108.0
26 TraesCS2A01G321700 chr2D 84.237 793 70 29 1932 2708 435197336 435198089 0.000000e+00 721.0
27 TraesCS2A01G321700 chr2D 85.843 664 45 18 778 1416 435221665 435222304 0.000000e+00 660.0
28 TraesCS2A01G321700 chr2D 90.019 521 29 13 778 1287 435196608 435197116 0.000000e+00 652.0
29 TraesCS2A01G321700 chr2D 85.333 525 28 15 655 1162 435275222 435275714 6.380000e-137 497.0
30 TraesCS2A01G321700 chr2D 89.744 351 32 4 2005 2355 435224605 435224951 2.340000e-121 446.0
31 TraesCS2A01G321700 chr2D 83.457 405 30 23 92 477 435272034 435272420 3.160000e-90 342.0
32 TraesCS2A01G321700 chr2D 90.868 219 15 5 2007 2225 435308547 435308760 4.180000e-74 289.0
33 TraesCS2A01G321700 chr2D 82.143 280 32 12 2431 2710 435225002 435225263 1.200000e-54 224.0
34 TraesCS2A01G321700 chr2D 85.246 183 17 6 92 269 435170316 435170493 2.630000e-41 180.0
35 TraesCS2A01G321700 chr2D 84.153 183 10 8 109 272 435208959 435209141 3.420000e-35 159.0
36 TraesCS2A01G321700 chr2D 95.714 70 3 0 30 99 28645204 28645135 2.700000e-21 113.0
37 TraesCS2A01G321700 chr2D 92.105 76 5 1 30 104 597620239 597620164 4.520000e-19 106.0
38 TraesCS2A01G321700 chr2D 97.143 35 0 1 2921 2954 644149784 644149818 1.280000e-04 58.4
39 TraesCS2A01G321700 chr5A 94.444 72 4 0 27 98 547999152 547999223 9.710000e-21 111.0
40 TraesCS2A01G321700 chr5A 100.000 31 0 0 2924 2954 140595607 140595637 1.280000e-04 58.4
41 TraesCS2A01G321700 chr5A 92.105 38 2 1 2917 2954 618479404 618479440 6.000000e-03 52.8
42 TraesCS2A01G321700 chr3D 95.652 69 3 0 30 98 450237175 450237107 9.710000e-21 111.0
43 TraesCS2A01G321700 chr1A 95.652 69 3 0 30 98 292539314 292539246 9.710000e-21 111.0
44 TraesCS2A01G321700 chr1A 95.714 70 2 1 30 98 543415241 543415172 9.710000e-21 111.0
45 TraesCS2A01G321700 chr1A 95.652 69 3 0 27 95 572995511 572995579 9.710000e-21 111.0
46 TraesCS2A01G321700 chr4A 94.366 71 4 0 25 95 717041693 717041763 3.490000e-20 110.0
47 TraesCS2A01G321700 chr3A 93.333 75 4 1 27 100 582355515 582355589 3.490000e-20 110.0
48 TraesCS2A01G321700 chr7A 100.000 31 0 0 2924 2954 674875616 674875646 1.280000e-04 58.4
49 TraesCS2A01G321700 chr7A 92.683 41 0 2 2916 2954 124795862 124795901 4.620000e-04 56.5
50 TraesCS2A01G321700 chr5B 100.000 31 0 0 2924 2954 531475014 531474984 1.280000e-04 58.4
51 TraesCS2A01G321700 chr3B 100.000 31 0 0 2924 2954 796518171 796518141 1.280000e-04 58.4
52 TraesCS2A01G321700 chr3B 100.000 31 0 0 2924 2954 823171811 823171841 1.280000e-04 58.4
53 TraesCS2A01G321700 chr1B 100.000 31 0 0 2924 2954 496714841 496714871 1.280000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G321700 chr2A 551371071 551374381 3310 True 6115.000000 6115 100.000000 1 3311 1 chr2A.!!$R1 3310
1 TraesCS2A01G321700 chr2A 551480808 551482566 1758 True 568.500000 579 85.003500 865 2708 2 chr2A.!!$R6 1843
2 TraesCS2A01G321700 chr2A 551446339 551446910 571 True 529.000000 529 84.041000 2040 2603 1 chr2A.!!$R2 563
3 TraesCS2A01G321700 chr2A 551461448 551469515 8067 True 439.833333 660 86.407000 162 2710 6 chr2A.!!$R5 2548
4 TraesCS2A01G321700 chr2A 551451032 551453656 2624 True 319.033333 680 93.042333 312 1560 3 chr2A.!!$R4 1248
5 TraesCS2A01G321700 chr2B 513680599 513682114 1515 False 591.500000 671 84.013500 778 2708 2 chr2B.!!$F2 1930
6 TraesCS2A01G321700 chr2B 513704601 513710152 5551 False 468.333333 1175 89.552333 92 3311 6 chr2B.!!$F4 3219
7 TraesCS2A01G321700 chr2B 513693689 513697174 3485 False 445.666667 586 84.607333 109 2710 3 chr2B.!!$F3 2601
8 TraesCS2A01G321700 chr2D 435196608 435198089 1481 False 686.500000 721 87.128000 778 2708 2 chr2D.!!$F5 1930
9 TraesCS2A01G321700 chr2D 435221665 435225263 3598 False 443.333333 660 85.910000 778 2710 3 chr2D.!!$F6 1932
10 TraesCS2A01G321700 chr2D 435272034 435275714 3680 False 419.500000 497 84.395000 92 1162 2 chr2D.!!$F7 1070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 11687 0.037303 ACATCCACCACCAGCTCAAG 59.963 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2776 16153 0.039527 AAGGACAACGAAAATGCGGC 60.04 50.0 0.0 0.0 35.12 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.637104 CGGGAGAGAAAATATAACACACG 57.363 43.478 0.00 0.00 0.00 4.49
23 24 4.025979 CGGGAGAGAAAATATAACACACGC 60.026 45.833 0.00 0.00 0.00 5.34
24 25 5.116882 GGGAGAGAAAATATAACACACGCT 58.883 41.667 0.00 0.00 0.00 5.07
25 26 5.234543 GGGAGAGAAAATATAACACACGCTC 59.765 44.000 0.00 0.00 0.00 5.03
26 27 5.810587 GGAGAGAAAATATAACACACGCTCA 59.189 40.000 0.00 0.00 0.00 4.26
27 28 6.480320 GGAGAGAAAATATAACACACGCTCAT 59.520 38.462 0.00 0.00 0.00 2.90
29 30 8.581057 AGAGAAAATATAACACACGCTCATAG 57.419 34.615 0.00 0.00 0.00 2.23
30 31 8.198109 AGAGAAAATATAACACACGCTCATAGT 58.802 33.333 0.00 0.00 0.00 2.12
31 32 8.718102 AGAAAATATAACACACGCTCATAGTT 57.282 30.769 0.00 0.00 0.00 2.24
32 33 8.604035 AGAAAATATAACACACGCTCATAGTTG 58.396 33.333 0.00 0.00 0.00 3.16
35 36 3.878086 AACACACGCTCATAGTTGTTG 57.122 42.857 0.00 0.00 0.00 3.33
37 38 3.059884 ACACACGCTCATAGTTGTTGAG 58.940 45.455 0.00 0.00 42.83 3.02
38 39 3.059884 CACACGCTCATAGTTGTTGAGT 58.940 45.455 2.97 0.00 42.12 3.41
39 40 3.494626 CACACGCTCATAGTTGTTGAGTT 59.505 43.478 2.97 0.00 42.12 3.01
40 41 4.684242 CACACGCTCATAGTTGTTGAGTTA 59.316 41.667 2.97 0.00 42.12 2.24
41 42 5.176774 CACACGCTCATAGTTGTTGAGTTAA 59.823 40.000 2.97 0.00 42.12 2.01
42 43 5.756347 ACACGCTCATAGTTGTTGAGTTAAA 59.244 36.000 2.97 0.00 42.12 1.52
43 44 6.259167 ACACGCTCATAGTTGTTGAGTTAAAA 59.741 34.615 2.97 0.00 42.12 1.52
44 45 6.792250 CACGCTCATAGTTGTTGAGTTAAAAG 59.208 38.462 2.97 0.00 42.12 2.27
45 46 5.790495 CGCTCATAGTTGTTGAGTTAAAAGC 59.210 40.000 2.97 0.00 42.12 3.51
47 48 6.565999 GCTCATAGTTGTTGAGTTAAAAGCGT 60.566 38.462 2.97 0.00 42.12 5.07
48 49 6.655062 TCATAGTTGTTGAGTTAAAAGCGTG 58.345 36.000 0.00 0.00 0.00 5.34
49 50 4.957759 AGTTGTTGAGTTAAAAGCGTGT 57.042 36.364 0.00 0.00 0.00 4.49
50 51 4.658071 AGTTGTTGAGTTAAAAGCGTGTG 58.342 39.130 0.00 0.00 0.00 3.82
53 54 5.798015 TGTTGAGTTAAAAGCGTGTGTTA 57.202 34.783 0.00 0.00 0.00 2.41
54 55 6.366315 TGTTGAGTTAAAAGCGTGTGTTAT 57.634 33.333 0.00 0.00 0.00 1.89
56 57 5.994887 TGAGTTAAAAGCGTGTGTTATGT 57.005 34.783 0.00 0.00 0.00 2.29
57 58 6.366315 TGAGTTAAAAGCGTGTGTTATGTT 57.634 33.333 0.00 0.00 0.00 2.71
59 60 7.251994 TGAGTTAAAAGCGTGTGTTATGTTTT 58.748 30.769 0.00 0.00 31.07 2.43
60 61 8.396390 TGAGTTAAAAGCGTGTGTTATGTTTTA 58.604 29.630 0.00 0.00 29.87 1.52
61 62 9.389570 GAGTTAAAAGCGTGTGTTATGTTTTAT 57.610 29.630 0.00 0.00 29.87 1.40
62 63 9.176181 AGTTAAAAGCGTGTGTTATGTTTTATG 57.824 29.630 0.00 0.00 29.87 1.90
63 64 8.960075 GTTAAAAGCGTGTGTTATGTTTTATGT 58.040 29.630 0.00 0.00 29.87 2.29
64 65 7.617533 AAAAGCGTGTGTTATGTTTTATGTC 57.382 32.000 0.00 0.00 29.87 3.06
65 66 5.291293 AGCGTGTGTTATGTTTTATGTCC 57.709 39.130 0.00 0.00 0.00 4.02
66 67 4.155280 AGCGTGTGTTATGTTTTATGTCCC 59.845 41.667 0.00 0.00 0.00 4.46
67 68 4.643953 CGTGTGTTATGTTTTATGTCCCG 58.356 43.478 0.00 0.00 0.00 5.14
69 70 5.334260 CGTGTGTTATGTTTTATGTCCCGTT 60.334 40.000 0.00 0.00 0.00 4.44
72 73 4.519350 TGTTATGTTTTATGTCCCGTTGCA 59.481 37.500 0.00 0.00 0.00 4.08
73 74 5.009710 TGTTATGTTTTATGTCCCGTTGCAA 59.990 36.000 0.00 0.00 0.00 4.08
74 75 3.357166 TGTTTTATGTCCCGTTGCAAC 57.643 42.857 19.89 19.89 0.00 4.17
85 86 4.927782 TTGCAACGCACGGGCTCT 62.928 61.111 8.62 0.00 38.71 4.09
86 87 4.927782 TGCAACGCACGGGCTCTT 62.928 61.111 8.62 0.00 38.10 2.85
87 88 3.660111 GCAACGCACGGGCTCTTT 61.660 61.111 8.62 0.00 38.10 2.52
89 90 1.370414 CAACGCACGGGCTCTTTTG 60.370 57.895 8.62 1.62 38.10 2.44
93 94 1.796796 GCACGGGCTCTTTTGCTAG 59.203 57.895 0.00 0.00 36.96 3.42
161 163 0.249699 CGTCAAAACCTTTTGGCCCC 60.250 55.000 0.00 0.00 46.91 5.80
162 164 1.128200 GTCAAAACCTTTTGGCCCCT 58.872 50.000 0.00 0.00 44.64 4.79
163 165 1.127343 TCAAAACCTTTTGGCCCCTG 58.873 50.000 0.00 0.00 45.68 4.45
164 166 0.836606 CAAAACCTTTTGGCCCCTGT 59.163 50.000 0.00 0.00 45.59 4.00
165 167 0.836606 AAAACCTTTTGGCCCCTGTG 59.163 50.000 0.00 0.00 45.59 3.66
207 5678 1.673920 GAGACACAAGCCGGAAAAACA 59.326 47.619 5.05 0.00 0.00 2.83
210 5681 2.028130 ACACAAGCCGGAAAAACATGA 58.972 42.857 5.05 0.00 0.00 3.07
235 5706 3.888930 CCAACCGCCATTACATTAATCCT 59.111 43.478 0.00 0.00 0.00 3.24
291 5794 1.341156 TTTTGCCAACCCCCTTGTGG 61.341 55.000 0.00 0.00 0.00 4.17
298 5801 1.076350 CAACCCCCTTGTGGTCCATTA 59.924 52.381 0.00 0.00 34.15 1.90
299 5802 1.693799 ACCCCCTTGTGGTCCATTAT 58.306 50.000 0.00 0.00 0.00 1.28
300 5803 2.007636 ACCCCCTTGTGGTCCATTATT 58.992 47.619 0.00 0.00 0.00 1.40
302 5805 2.244769 CCCCCTTGTGGTCCATTATTCT 59.755 50.000 0.00 0.00 0.00 2.40
303 5806 3.461831 CCCCCTTGTGGTCCATTATTCTA 59.538 47.826 0.00 0.00 0.00 2.10
304 5807 4.461198 CCCCTTGTGGTCCATTATTCTAC 58.539 47.826 0.00 0.00 0.00 2.59
393 6117 2.519780 GGCCAAACCCGGTTGACA 60.520 61.111 2.79 0.00 0.00 3.58
394 6118 2.128507 GGCCAAACCCGGTTGACAA 61.129 57.895 2.79 0.00 0.00 3.18
505 8818 5.446260 GGGGGAAATCAAACTAGGACTAA 57.554 43.478 0.00 0.00 0.00 2.24
508 8821 7.580007 GGGGGAAATCAAACTAGGACTAAATA 58.420 38.462 0.00 0.00 0.00 1.40
535 8848 3.954904 GCCCTGTGACTGAGAGATACTTA 59.045 47.826 0.00 0.00 0.00 2.24
543 8856 7.393515 TGTGACTGAGAGATACTTAGCACTTTA 59.606 37.037 0.00 0.00 38.57 1.85
556 8871 0.525761 CACTTTAACACCATGGCCCG 59.474 55.000 13.04 2.89 0.00 6.13
558 8873 1.005450 ACTTTAACACCATGGCCCGAT 59.995 47.619 13.04 0.00 0.00 4.18
559 8874 2.240160 ACTTTAACACCATGGCCCGATA 59.760 45.455 13.04 0.00 0.00 2.92
567 8882 0.469917 CATGGCCCGATAACTCCAGT 59.530 55.000 0.00 0.00 31.36 4.00
573 8888 2.628657 GCCCGATAACTCCAGTGATAGT 59.371 50.000 0.00 0.00 0.00 2.12
578 8893 5.278364 CCGATAACTCCAGTGATAGTGTACC 60.278 48.000 0.00 0.00 0.00 3.34
581 8896 2.025155 CTCCAGTGATAGTGTACCGCT 58.975 52.381 0.00 0.00 0.00 5.52
596 8911 1.597797 CCGCTACACCGGTGGTAAGA 61.598 60.000 36.47 15.93 43.24 2.10
607 8922 5.413213 CACCGGTGGTAAGAATAAATTGACA 59.587 40.000 27.57 0.00 32.11 3.58
611 8926 6.966632 CGGTGGTAAGAATAAATTGACATGTG 59.033 38.462 1.15 0.00 0.00 3.21
612 8927 6.751888 GGTGGTAAGAATAAATTGACATGTGC 59.248 38.462 1.15 0.00 0.00 4.57
613 8928 7.312154 GTGGTAAGAATAAATTGACATGTGCA 58.688 34.615 1.15 0.00 0.00 4.57
637 10253 3.563390 TGCATGAACTCACATTTCGTTGA 59.437 39.130 0.00 0.00 0.00 3.18
642 10258 1.072331 ACTCACATTTCGTTGAGGCCT 59.928 47.619 3.86 3.86 33.09 5.19
738 11373 2.554462 GCTCACCTTCACTTTTCCTTCC 59.446 50.000 0.00 0.00 0.00 3.46
833 11488 2.858344 CCTACGTTGACGCCTTTGATAG 59.142 50.000 3.05 0.00 44.43 2.08
902 11602 6.835819 AGCTCGCCTTCTATATATACACAA 57.164 37.500 0.00 0.00 0.00 3.33
921 11625 3.157087 CAACAAAGCCCTGTTCCTACAT 58.843 45.455 0.00 0.00 37.43 2.29
932 11682 0.618458 TTCCTACATCCACCACCAGC 59.382 55.000 0.00 0.00 0.00 4.85
933 11683 0.252696 TCCTACATCCACCACCAGCT 60.253 55.000 0.00 0.00 0.00 4.24
934 11684 0.179000 CCTACATCCACCACCAGCTC 59.821 60.000 0.00 0.00 0.00 4.09
935 11685 0.904649 CTACATCCACCACCAGCTCA 59.095 55.000 0.00 0.00 0.00 4.26
936 11686 1.278985 CTACATCCACCACCAGCTCAA 59.721 52.381 0.00 0.00 0.00 3.02
937 11687 0.037303 ACATCCACCACCAGCTCAAG 59.963 55.000 0.00 0.00 0.00 3.02
938 11688 1.001641 ATCCACCACCAGCTCAAGC 60.002 57.895 0.00 0.00 42.49 4.01
951 11705 0.676151 CTCAAGCCTCAACTGCCTCC 60.676 60.000 0.00 0.00 0.00 4.30
999 11769 3.214328 AGCCATCCAATTTACGACCATC 58.786 45.455 0.00 0.00 0.00 3.51
1306 12085 6.039717 TGAGTATTCTTGTTCTTGCAAAGCTT 59.960 34.615 0.00 0.00 45.70 3.74
1319 12098 8.574196 TCTTGCAAAGCTTATTTACAAAAGTC 57.426 30.769 0.00 0.00 45.70 3.01
1381 12166 5.297776 AGCTAATGTGTGATTGGTAGAATGC 59.702 40.000 0.00 0.00 0.00 3.56
1391 12189 5.124297 TGATTGGTAGAATGCATGTGTTCTG 59.876 40.000 18.88 0.00 36.23 3.02
1392 12190 2.749076 TGGTAGAATGCATGTGTTCTGC 59.251 45.455 18.88 17.53 40.10 4.26
1393 12191 2.098117 GGTAGAATGCATGTGTTCTGCC 59.902 50.000 22.92 22.92 45.48 4.85
1394 12192 2.211250 AGAATGCATGTGTTCTGCCT 57.789 45.000 0.00 0.00 38.89 4.75
1416 12214 2.350772 GCGAAAGTGGTTCATCTGGTTG 60.351 50.000 0.00 0.00 35.83 3.77
1422 12220 5.241403 AGTGGTTCATCTGGTTGTGATTA 57.759 39.130 0.00 0.00 0.00 1.75
1591 12557 4.937201 TCTGCAAGAACAACTAGACAGA 57.063 40.909 0.00 0.00 42.31 3.41
1632 14713 0.874607 AAAGTCTGCACGTCCGTGTC 60.875 55.000 19.67 12.87 46.90 3.67
1636 14717 3.783478 CTGCACGTCCGTGTCCACA 62.783 63.158 19.67 9.15 46.90 4.17
1637 14718 3.036084 GCACGTCCGTGTCCACAG 61.036 66.667 19.67 0.00 46.90 3.66
1638 14719 2.415843 CACGTCCGTGTCCACAGT 59.584 61.111 11.49 0.00 40.91 3.55
1639 14720 1.660575 CACGTCCGTGTCCACAGTC 60.661 63.158 11.49 0.00 40.91 3.51
1640 14721 2.049433 CGTCCGTGTCCACAGTCC 60.049 66.667 0.00 0.00 0.00 3.85
1641 14722 2.852180 CGTCCGTGTCCACAGTCCA 61.852 63.158 0.00 0.00 0.00 4.02
1642 14723 1.444250 GTCCGTGTCCACAGTCCAA 59.556 57.895 0.00 0.00 0.00 3.53
1669 14750 4.517075 GCCAGAAGCTCTCAACTTTACTTT 59.483 41.667 0.00 0.00 38.99 2.66
1682 14767 7.425606 TCAACTTTACTTTCATTTCTCCAAGC 58.574 34.615 0.00 0.00 0.00 4.01
1735 14858 1.839994 CCATTAGCAAGGTCTCCTCCA 59.160 52.381 0.00 0.00 30.89 3.86
1736 14859 2.158842 CCATTAGCAAGGTCTCCTCCAG 60.159 54.545 0.00 0.00 30.89 3.86
1745 14868 0.980423 GTCTCCTCCAGGCTTCAGTT 59.020 55.000 0.00 0.00 34.44 3.16
1753 14886 5.013704 TCCTCCAGGCTTCAGTTATAAAACA 59.986 40.000 0.00 0.00 34.94 2.83
1754 14887 5.710099 CCTCCAGGCTTCAGTTATAAAACAA 59.290 40.000 0.00 0.00 38.12 2.83
1755 14888 6.349363 CCTCCAGGCTTCAGTTATAAAACAAC 60.349 42.308 0.00 0.00 38.12 3.32
1789 14922 1.239968 GCTGTGCCACCCTCTTCTTG 61.240 60.000 0.00 0.00 0.00 3.02
1796 14929 2.814097 GCCACCCTCTTCTTGCTAACAA 60.814 50.000 0.00 0.00 0.00 2.83
1802 14935 4.389374 CCTCTTCTTGCTAACAACTCCAA 58.611 43.478 0.00 0.00 0.00 3.53
1803 14936 4.453819 CCTCTTCTTGCTAACAACTCCAAG 59.546 45.833 0.00 0.00 36.81 3.61
1817 14957 6.692486 ACAACTCCAAGAGTACATTAGAGTG 58.308 40.000 10.93 8.68 42.59 3.51
1822 15050 6.864342 TCCAAGAGTACATTAGAGTGCTAAC 58.136 40.000 0.00 0.00 39.29 2.34
1824 15052 6.754209 CCAAGAGTACATTAGAGTGCTAACTG 59.246 42.308 0.00 0.00 39.29 3.16
1827 15055 8.299990 AGAGTACATTAGAGTGCTAACTGATT 57.700 34.615 0.00 0.00 39.29 2.57
1833 15068 3.403038 AGAGTGCTAACTGATTGCGTTT 58.597 40.909 0.00 0.00 36.52 3.60
1847 15082 7.042791 ACTGATTGCGTTTTCCTTGTAATTTTG 60.043 33.333 0.00 0.00 0.00 2.44
1848 15083 5.396750 TTGCGTTTTCCTTGTAATTTTGC 57.603 34.783 0.00 0.00 0.00 3.68
1849 15084 3.804873 TGCGTTTTCCTTGTAATTTTGCC 59.195 39.130 0.00 0.00 0.00 4.52
1851 15086 4.509970 GCGTTTTCCTTGTAATTTTGCCTT 59.490 37.500 0.00 0.00 0.00 4.35
1854 15089 7.254488 GCGTTTTCCTTGTAATTTTGCCTTAAA 60.254 33.333 0.00 0.00 0.00 1.52
1879 15114 3.684788 AGATGCACGAACATGTCTTAACC 59.315 43.478 0.00 0.00 0.00 2.85
1882 15117 2.806244 GCACGAACATGTCTTAACCACT 59.194 45.455 0.00 0.00 0.00 4.00
1884 15119 4.091509 GCACGAACATGTCTTAACCACTAG 59.908 45.833 0.00 0.00 0.00 2.57
1893 15128 4.215399 TGTCTTAACCACTAGTTGCAATGC 59.785 41.667 0.59 0.00 39.67 3.56
1930 15171 0.512952 GTGCACACGATGGTTCAGAC 59.487 55.000 13.17 0.00 0.00 3.51
1937 15247 2.989840 CACGATGGTTCAGACTTCAGAC 59.010 50.000 0.00 0.00 0.00 3.51
1947 15257 4.337145 TCAGACTTCAGACTAGGAACCTC 58.663 47.826 0.00 0.00 0.00 3.85
1978 15288 5.418209 ACTTACCTACATCTTGTTCGCTAGT 59.582 40.000 0.00 0.00 0.00 2.57
1979 15289 6.600822 ACTTACCTACATCTTGTTCGCTAGTA 59.399 38.462 0.00 0.00 0.00 1.82
1980 15290 5.502153 ACCTACATCTTGTTCGCTAGTAG 57.498 43.478 0.00 0.00 0.00 2.57
1981 15291 4.948621 ACCTACATCTTGTTCGCTAGTAGT 59.051 41.667 0.00 0.00 0.00 2.73
1982 15292 6.118170 ACCTACATCTTGTTCGCTAGTAGTA 58.882 40.000 0.00 0.00 0.00 1.82
1983 15293 6.260493 ACCTACATCTTGTTCGCTAGTAGTAG 59.740 42.308 0.00 0.00 33.48 2.57
2048 15367 6.374417 AGTATACTTGTGTGGATCAAGGTT 57.626 37.500 0.00 0.99 44.29 3.50
2346 15689 1.822990 CCACCTCGCTAACAGTTAGGA 59.177 52.381 19.95 14.25 33.80 2.94
2363 15706 1.208535 AGGATAAATCAACCGCACCGA 59.791 47.619 0.00 0.00 0.00 4.69
2364 15707 1.329599 GGATAAATCAACCGCACCGAC 59.670 52.381 0.00 0.00 0.00 4.79
2365 15708 1.329599 GATAAATCAACCGCACCGACC 59.670 52.381 0.00 0.00 0.00 4.79
2366 15709 0.674269 TAAATCAACCGCACCGACCC 60.674 55.000 0.00 0.00 0.00 4.46
2367 15710 3.912745 AATCAACCGCACCGACCCC 62.913 63.158 0.00 0.00 0.00 4.95
2372 15715 4.323477 CCGCACCGACCCCTCAAA 62.323 66.667 0.00 0.00 0.00 2.69
2373 15716 2.281208 CGCACCGACCCCTCAAAA 60.281 61.111 0.00 0.00 0.00 2.44
2374 15717 1.894756 CGCACCGACCCCTCAAAAA 60.895 57.895 0.00 0.00 0.00 1.94
2408 15758 1.485066 ACCATAAGCCGGTTAGGTCTG 59.515 52.381 1.90 0.00 43.70 3.51
2440 15798 7.661847 AGTTACTAAAAGAACTGAACCTGATGG 59.338 37.037 0.00 0.00 34.61 3.51
2521 15886 2.895424 AAAGGGCCTCCTCGTGTGG 61.895 63.158 6.46 0.00 44.07 4.17
2535 15900 2.035449 TCGTGTGGGAGTTTGAGTACTG 59.965 50.000 0.00 0.00 0.00 2.74
2557 15922 7.882179 ACTGCCACCTTTTAATTAGTTAAGTG 58.118 34.615 0.00 3.16 31.81 3.16
2649 16016 1.142748 CTAGCCTCCTGGAGTTGCG 59.857 63.158 21.70 8.03 34.57 4.85
2715 16088 2.092429 GTGCAATCTTGGATGGGGACTA 60.092 50.000 0.00 0.00 0.00 2.59
2723 16096 1.494721 TGGATGGGGACTAAATGGAGC 59.505 52.381 0.00 0.00 0.00 4.70
2726 16099 0.918983 TGGGGACTAAATGGAGCAGG 59.081 55.000 0.00 0.00 0.00 4.85
2758 16131 3.373439 GCAACTCTGTTGTGGATGAGATC 59.627 47.826 11.35 0.00 0.00 2.75
2759 16132 4.572909 CAACTCTGTTGTGGATGAGATCA 58.427 43.478 0.00 0.00 0.00 2.92
2760 16133 5.183969 CAACTCTGTTGTGGATGAGATCAT 58.816 41.667 0.00 0.00 39.70 2.45
2786 16163 2.618241 TGTATGATGAGGCCGCATTTTC 59.382 45.455 23.68 12.38 0.00 2.29
2787 16164 0.664761 ATGATGAGGCCGCATTTTCG 59.335 50.000 23.68 0.00 0.00 3.46
2788 16165 0.676466 TGATGAGGCCGCATTTTCGT 60.676 50.000 23.68 2.22 0.00 3.85
2789 16166 0.451783 GATGAGGCCGCATTTTCGTT 59.548 50.000 23.68 0.00 0.00 3.85
2799 16176 2.724174 CGCATTTTCGTTGTCCTTTTCC 59.276 45.455 0.00 0.00 0.00 3.13
2802 16179 4.749598 GCATTTTCGTTGTCCTTTTCCATT 59.250 37.500 0.00 0.00 0.00 3.16
2803 16180 5.333263 GCATTTTCGTTGTCCTTTTCCATTG 60.333 40.000 0.00 0.00 0.00 2.82
2804 16181 5.584253 TTTTCGTTGTCCTTTTCCATTGA 57.416 34.783 0.00 0.00 0.00 2.57
2805 16182 4.829064 TTCGTTGTCCTTTTCCATTGAG 57.171 40.909 0.00 0.00 0.00 3.02
2824 16201 3.006247 GAGACATTTGTTCTGGAGGAGC 58.994 50.000 0.00 0.00 0.00 4.70
2833 16210 0.326264 TCTGGAGGAGCCTGCTTTTC 59.674 55.000 9.50 0.00 37.63 2.29
2840 16217 4.130857 GAGGAGCCTGCTTTTCCTTATAC 58.869 47.826 0.00 0.00 41.32 1.47
2841 16218 3.783082 AGGAGCCTGCTTTTCCTTATACT 59.217 43.478 0.00 0.00 38.13 2.12
2845 16222 6.062258 AGCCTGCTTTTCCTTATACTAACA 57.938 37.500 0.00 0.00 0.00 2.41
2847 16224 6.374613 AGCCTGCTTTTCCTTATACTAACAAC 59.625 38.462 0.00 0.00 0.00 3.32
2848 16225 6.374613 GCCTGCTTTTCCTTATACTAACAACT 59.625 38.462 0.00 0.00 0.00 3.16
2849 16226 7.551617 GCCTGCTTTTCCTTATACTAACAACTA 59.448 37.037 0.00 0.00 0.00 2.24
2850 16227 8.880750 CCTGCTTTTCCTTATACTAACAACTAC 58.119 37.037 0.00 0.00 0.00 2.73
2863 16882 9.852091 ATACTAACAACTACAGTGTAAGCTTAC 57.148 33.333 26.50 26.50 0.00 2.34
2869 16888 2.413837 ACAGTGTAAGCTTACCTTGCG 58.586 47.619 29.15 17.06 38.80 4.85
2872 16891 3.064931 AGTGTAAGCTTACCTTGCGAAC 58.935 45.455 29.15 19.66 38.80 3.95
2886 16905 5.746721 ACCTTGCGAACAACAAGAAAAATAC 59.253 36.000 5.12 0.00 45.99 1.89
2888 16907 6.142320 CCTTGCGAACAACAAGAAAAATACTC 59.858 38.462 5.12 0.00 45.99 2.59
2889 16908 6.125327 TGCGAACAACAAGAAAAATACTCA 57.875 33.333 0.00 0.00 0.00 3.41
2890 16909 6.734137 TGCGAACAACAAGAAAAATACTCAT 58.266 32.000 0.00 0.00 0.00 2.90
2891 16910 7.866729 TGCGAACAACAAGAAAAATACTCATA 58.133 30.769 0.00 0.00 0.00 2.15
2892 16911 8.346300 TGCGAACAACAAGAAAAATACTCATAA 58.654 29.630 0.00 0.00 0.00 1.90
2893 16912 8.627428 GCGAACAACAAGAAAAATACTCATAAC 58.373 33.333 0.00 0.00 0.00 1.89
2928 16947 9.502091 TTGTTGTTCACAAGATAAGCTTATACT 57.498 29.630 18.87 14.07 40.71 2.12
2933 16952 9.465985 GTTCACAAGATAAGCTTATACTACTCC 57.534 37.037 18.87 5.09 34.31 3.85
2934 16953 8.179509 TCACAAGATAAGCTTATACTACTCCC 57.820 38.462 18.87 4.38 34.31 4.30
2935 16954 8.005388 TCACAAGATAAGCTTATACTACTCCCT 58.995 37.037 18.87 6.59 34.31 4.20
2936 16955 8.301002 CACAAGATAAGCTTATACTACTCCCTC 58.699 40.741 18.87 3.81 34.31 4.30
2937 16956 7.452189 ACAAGATAAGCTTATACTACTCCCTCC 59.548 40.741 18.87 2.50 34.31 4.30
2938 16957 6.181908 AGATAAGCTTATACTACTCCCTCCG 58.818 44.000 18.87 0.00 0.00 4.63
2939 16958 3.880168 AGCTTATACTACTCCCTCCGT 57.120 47.619 0.00 0.00 0.00 4.69
2940 16959 4.181799 AGCTTATACTACTCCCTCCGTT 57.818 45.455 0.00 0.00 0.00 4.44
2941 16960 4.143543 AGCTTATACTACTCCCTCCGTTC 58.856 47.826 0.00 0.00 0.00 3.95
2942 16961 4.141205 AGCTTATACTACTCCCTCCGTTCT 60.141 45.833 0.00 0.00 0.00 3.01
2943 16962 4.583907 GCTTATACTACTCCCTCCGTTCTT 59.416 45.833 0.00 0.00 0.00 2.52
2944 16963 5.767168 GCTTATACTACTCCCTCCGTTCTTA 59.233 44.000 0.00 0.00 0.00 2.10
2945 16964 6.264067 GCTTATACTACTCCCTCCGTTCTTAA 59.736 42.308 0.00 0.00 0.00 1.85
2946 16965 7.201857 GCTTATACTACTCCCTCCGTTCTTAAA 60.202 40.741 0.00 0.00 0.00 1.52
2947 16966 8.773033 TTATACTACTCCCTCCGTTCTTAAAT 57.227 34.615 0.00 0.00 0.00 1.40
2948 16967 9.866655 TTATACTACTCCCTCCGTTCTTAAATA 57.133 33.333 0.00 0.00 0.00 1.40
2949 16968 8.953223 ATACTACTCCCTCCGTTCTTAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
2951 16970 8.773033 ACTACTCCCTCCGTTCTTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
2952 16971 8.858094 ACTACTCCCTCCGTTCTTAAATATAAG 58.142 37.037 0.00 0.00 39.97 1.73
2953 16972 7.672122 ACTCCCTCCGTTCTTAAATATAAGT 57.328 36.000 0.00 0.00 39.65 2.24
2954 16973 8.773033 ACTCCCTCCGTTCTTAAATATAAGTA 57.227 34.615 0.00 0.00 39.65 2.24
2955 16974 9.205513 ACTCCCTCCGTTCTTAAATATAAGTAA 57.794 33.333 0.00 0.00 39.65 2.24
2990 17009 8.540507 ACTATTGGAGTAGTTATGATGACACT 57.459 34.615 0.00 0.00 36.27 3.55
2991 17010 8.982723 ACTATTGGAGTAGTTATGATGACACTT 58.017 33.333 0.00 0.00 36.27 3.16
2992 17011 9.469807 CTATTGGAGTAGTTATGATGACACTTC 57.530 37.037 0.00 0.00 0.00 3.01
2993 17012 5.891451 TGGAGTAGTTATGATGACACTTCG 58.109 41.667 0.00 0.00 0.00 3.79
2994 17013 5.163550 TGGAGTAGTTATGATGACACTTCGG 60.164 44.000 0.00 0.00 0.00 4.30
2995 17014 5.263968 AGTAGTTATGATGACACTTCGGG 57.736 43.478 0.00 0.00 0.00 5.14
2996 17015 3.543680 AGTTATGATGACACTTCGGGG 57.456 47.619 0.00 0.00 0.00 5.73
2997 17016 2.838202 AGTTATGATGACACTTCGGGGT 59.162 45.455 0.00 0.00 0.00 4.95
2998 17017 2.936498 GTTATGATGACACTTCGGGGTG 59.064 50.000 7.04 7.04 42.34 4.61
2999 17018 0.392998 ATGATGACACTTCGGGGTGC 60.393 55.000 8.22 3.54 40.52 5.01
3000 17019 1.003839 GATGACACTTCGGGGTGCA 60.004 57.895 8.22 7.89 40.52 4.57
3001 17020 1.003355 ATGACACTTCGGGGTGCAG 60.003 57.895 8.22 0.00 40.52 4.41
3009 17028 0.316841 TTCGGGGTGCAGAAAAATGC 59.683 50.000 0.00 0.00 46.68 3.56
3024 17043 7.838771 AGAAAAATGCTTCTGAATTTATGCC 57.161 32.000 0.00 0.00 34.31 4.40
3025 17044 6.532657 AGAAAAATGCTTCTGAATTTATGCCG 59.467 34.615 0.00 0.00 34.31 5.69
3028 17047 2.159393 TGCTTCTGAATTTATGCCGTGC 60.159 45.455 0.00 0.00 0.00 5.34
3029 17048 2.159393 GCTTCTGAATTTATGCCGTGCA 60.159 45.455 1.01 1.01 44.86 4.57
3030 17049 3.673052 GCTTCTGAATTTATGCCGTGCAA 60.673 43.478 2.68 0.00 43.62 4.08
3032 17051 4.095410 TCTGAATTTATGCCGTGCAAAG 57.905 40.909 2.68 0.00 43.62 2.77
3039 17058 2.927553 ATGCCGTGCAAAGATTTCTC 57.072 45.000 2.68 0.00 43.62 2.87
3042 17061 1.806542 GCCGTGCAAAGATTTCTCAGA 59.193 47.619 0.00 0.00 0.00 3.27
3051 17070 2.709213 AGATTTCTCAGAGGTGCAAGC 58.291 47.619 0.00 0.00 0.00 4.01
3066 17085 2.032054 TGCAAGCTTAATATGAGCGCAC 59.968 45.455 11.47 3.13 44.71 5.34
3072 17091 1.483316 TAATATGAGCGCACGAACGG 58.517 50.000 11.47 0.00 0.00 4.44
3075 17094 1.655885 TATGAGCGCACGAACGGGTA 61.656 55.000 11.47 0.00 0.00 3.69
3078 17097 2.179018 GCGCACGAACGGGTACTA 59.821 61.111 0.30 0.00 0.00 1.82
3087 17106 3.821033 ACGAACGGGTACTACTAGTTTGT 59.179 43.478 0.00 3.49 35.35 2.83
3089 17108 4.618489 CGAACGGGTACTACTAGTTTGTTG 59.382 45.833 0.00 0.00 0.00 3.33
3093 17112 4.560108 CGGGTACTACTAGTTTGTTGCTGT 60.560 45.833 0.00 0.00 0.00 4.40
3097 17116 5.209818 ACTACTAGTTTGTTGCTGTGCTA 57.790 39.130 0.00 0.00 0.00 3.49
3099 17118 2.800544 ACTAGTTTGTTGCTGTGCTACG 59.199 45.455 0.00 0.00 37.12 3.51
3105 17124 2.549926 TGTTGCTGTGCTACGGATATG 58.450 47.619 0.00 0.00 37.12 1.78
3114 17133 4.462483 TGTGCTACGGATATGATGATGCTA 59.538 41.667 0.00 0.00 0.00 3.49
3118 17137 6.102663 GCTACGGATATGATGATGCTAAAGT 58.897 40.000 0.00 0.00 0.00 2.66
3133 17152 0.246635 AAAGTAGACGGCGCACTGAT 59.753 50.000 10.83 0.00 0.00 2.90
3146 17165 2.275318 GCACTGATAGTTCCAGCTCAC 58.725 52.381 0.00 0.00 35.14 3.51
3156 17175 1.303074 CCAGCTCACTGTGCCACAT 60.303 57.895 0.00 0.00 42.81 3.21
3162 17181 2.749076 GCTCACTGTGCCACATTAATCA 59.251 45.455 0.00 0.00 0.00 2.57
3190 17209 9.241919 CTGTAGTGGAAGATGACTAGATATGAT 57.758 37.037 0.00 0.00 0.00 2.45
3209 17228 4.728772 TGATCCTGAATTGGTTTGTGACT 58.271 39.130 0.00 0.00 0.00 3.41
3267 17286 1.446907 GGCATGTCTGAACCTCTGTG 58.553 55.000 0.00 0.00 0.00 3.66
3283 17302 0.662619 TGTGTGTAGCTTTGTGCAGC 59.337 50.000 0.00 0.00 45.94 5.25
3285 17304 0.179020 TGTGTAGCTTTGTGCAGCCT 60.179 50.000 0.00 0.00 45.94 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.025979 GCGTGTGTTATATTTTCTCTCCCG 60.026 45.833 0.00 0.00 0.00 5.14
1 2 5.116882 AGCGTGTGTTATATTTTCTCTCCC 58.883 41.667 0.00 0.00 0.00 4.30
2 3 5.810587 TGAGCGTGTGTTATATTTTCTCTCC 59.189 40.000 0.00 0.00 0.00 3.71
3 4 6.887376 TGAGCGTGTGTTATATTTTCTCTC 57.113 37.500 0.00 0.00 0.00 3.20
4 5 8.198109 ACTATGAGCGTGTGTTATATTTTCTCT 58.802 33.333 0.00 0.00 0.00 3.10
6 7 8.604035 CAACTATGAGCGTGTGTTATATTTTCT 58.396 33.333 0.00 0.00 0.00 2.52
7 8 8.388103 ACAACTATGAGCGTGTGTTATATTTTC 58.612 33.333 0.00 0.00 0.00 2.29
8 9 8.263940 ACAACTATGAGCGTGTGTTATATTTT 57.736 30.769 0.00 0.00 0.00 1.82
9 10 7.843490 ACAACTATGAGCGTGTGTTATATTT 57.157 32.000 0.00 0.00 0.00 1.40
10 11 7.547722 TCAACAACTATGAGCGTGTGTTATATT 59.452 33.333 0.00 0.00 0.00 1.28
11 12 7.039270 TCAACAACTATGAGCGTGTGTTATAT 58.961 34.615 0.00 0.00 0.00 0.86
13 14 5.234752 TCAACAACTATGAGCGTGTGTTAT 58.765 37.500 0.00 0.00 0.00 1.89
14 15 4.623002 TCAACAACTATGAGCGTGTGTTA 58.377 39.130 0.00 0.00 0.00 2.41
15 16 3.462982 TCAACAACTATGAGCGTGTGTT 58.537 40.909 0.00 0.00 0.00 3.32
16 17 3.059884 CTCAACAACTATGAGCGTGTGT 58.940 45.455 0.00 0.00 38.03 3.72
17 18 3.059884 ACTCAACAACTATGAGCGTGTG 58.940 45.455 3.57 0.00 46.56 3.82
18 19 3.386768 ACTCAACAACTATGAGCGTGT 57.613 42.857 3.57 0.00 46.56 4.49
19 20 5.839262 TTAACTCAACAACTATGAGCGTG 57.161 39.130 3.57 0.00 46.56 5.34
20 21 6.565999 GCTTTTAACTCAACAACTATGAGCGT 60.566 38.462 3.57 0.00 46.56 5.07
21 22 5.790495 GCTTTTAACTCAACAACTATGAGCG 59.210 40.000 3.57 0.00 46.56 5.03
22 23 5.790495 CGCTTTTAACTCAACAACTATGAGC 59.210 40.000 3.57 0.00 46.56 4.26
24 25 6.259167 ACACGCTTTTAACTCAACAACTATGA 59.741 34.615 0.00 0.00 0.00 2.15
25 26 6.356977 CACACGCTTTTAACTCAACAACTATG 59.643 38.462 0.00 0.00 0.00 2.23
26 27 6.037830 ACACACGCTTTTAACTCAACAACTAT 59.962 34.615 0.00 0.00 0.00 2.12
27 28 5.352016 ACACACGCTTTTAACTCAACAACTA 59.648 36.000 0.00 0.00 0.00 2.24
29 30 4.408694 ACACACGCTTTTAACTCAACAAC 58.591 39.130 0.00 0.00 0.00 3.32
30 31 4.688511 ACACACGCTTTTAACTCAACAA 57.311 36.364 0.00 0.00 0.00 2.83
31 32 4.688511 AACACACGCTTTTAACTCAACA 57.311 36.364 0.00 0.00 0.00 3.33
32 33 6.196571 ACATAACACACGCTTTTAACTCAAC 58.803 36.000 0.00 0.00 0.00 3.18
35 36 7.673810 AAAACATAACACACGCTTTTAACTC 57.326 32.000 0.00 0.00 0.00 3.01
37 38 8.960075 ACATAAAACATAACACACGCTTTTAAC 58.040 29.630 0.00 0.00 0.00 2.01
38 39 9.171701 GACATAAAACATAACACACGCTTTTAA 57.828 29.630 0.00 0.00 0.00 1.52
39 40 7.804129 GGACATAAAACATAACACACGCTTTTA 59.196 33.333 0.00 0.00 0.00 1.52
40 41 6.639279 GGACATAAAACATAACACACGCTTTT 59.361 34.615 0.00 0.00 0.00 2.27
41 42 6.146898 GGACATAAAACATAACACACGCTTT 58.853 36.000 0.00 0.00 0.00 3.51
42 43 5.335348 GGGACATAAAACATAACACACGCTT 60.335 40.000 0.00 0.00 0.00 4.68
43 44 4.155280 GGGACATAAAACATAACACACGCT 59.845 41.667 0.00 0.00 0.00 5.07
44 45 4.408694 GGGACATAAAACATAACACACGC 58.591 43.478 0.00 0.00 0.00 5.34
45 46 4.152759 ACGGGACATAAAACATAACACACG 59.847 41.667 0.00 0.00 0.00 4.49
47 48 5.563085 GCAACGGGACATAAAACATAACACA 60.563 40.000 0.00 0.00 0.00 3.72
48 49 4.854839 GCAACGGGACATAAAACATAACAC 59.145 41.667 0.00 0.00 0.00 3.32
49 50 4.519350 TGCAACGGGACATAAAACATAACA 59.481 37.500 0.00 0.00 0.00 2.41
50 51 5.049398 TGCAACGGGACATAAAACATAAC 57.951 39.130 0.00 0.00 0.00 1.89
53 54 3.908213 GTTGCAACGGGACATAAAACAT 58.092 40.909 14.90 0.00 0.00 2.71
54 55 3.357166 GTTGCAACGGGACATAAAACA 57.643 42.857 14.90 0.00 0.00 2.83
67 68 4.683334 GAGCCCGTGCGTTGCAAC 62.683 66.667 19.89 19.89 41.47 4.17
69 70 4.927782 AAGAGCCCGTGCGTTGCA 62.928 61.111 6.22 0.00 44.33 4.08
72 73 3.030652 CAAAAGAGCCCGTGCGTT 58.969 55.556 0.00 0.00 44.33 4.84
73 74 2.725203 TAGCAAAAGAGCCCGTGCGT 62.725 55.000 0.00 0.00 44.33 5.24
74 75 1.970917 CTAGCAAAAGAGCCCGTGCG 61.971 60.000 0.00 0.00 44.33 5.34
75 76 0.955919 ACTAGCAAAAGAGCCCGTGC 60.956 55.000 0.00 0.00 37.26 5.34
77 78 3.629142 ATTACTAGCAAAAGAGCCCGT 57.371 42.857 0.00 0.00 34.23 5.28
79 80 4.270008 TGGAATTACTAGCAAAAGAGCCC 58.730 43.478 0.00 0.00 34.23 5.19
81 82 5.877564 ACTCTGGAATTACTAGCAAAAGAGC 59.122 40.000 0.00 0.00 33.52 4.09
82 83 8.470805 TCTACTCTGGAATTACTAGCAAAAGAG 58.529 37.037 0.00 0.00 35.78 2.85
85 86 9.959721 ATTTCTACTCTGGAATTACTAGCAAAA 57.040 29.630 0.00 0.00 0.00 2.44
86 87 9.959721 AATTTCTACTCTGGAATTACTAGCAAA 57.040 29.630 0.00 0.00 0.00 3.68
87 88 9.383519 CAATTTCTACTCTGGAATTACTAGCAA 57.616 33.333 0.00 0.00 0.00 3.91
89 90 7.495934 TGCAATTTCTACTCTGGAATTACTAGC 59.504 37.037 0.00 0.00 0.00 3.42
93 94 6.092259 ACGTGCAATTTCTACTCTGGAATTAC 59.908 38.462 0.00 0.00 0.00 1.89
161 163 2.236803 GATGAGCACGCACAGCACAG 62.237 60.000 0.00 0.00 36.10 3.66
162 164 2.281002 ATGAGCACGCACAGCACA 60.281 55.556 0.00 0.00 37.02 4.57
163 165 2.236803 CTGATGAGCACGCACAGCAC 62.237 60.000 3.26 0.00 30.64 4.40
164 166 2.030862 TGATGAGCACGCACAGCA 59.969 55.556 3.26 3.26 31.23 4.41
165 167 2.783275 CTGATGAGCACGCACAGC 59.217 61.111 0.00 0.00 0.00 4.40
207 5678 1.280710 TGTAATGGCGGTTGGTCTCAT 59.719 47.619 0.00 0.00 0.00 2.90
210 5681 2.507407 AATGTAATGGCGGTTGGTCT 57.493 45.000 0.00 0.00 0.00 3.85
235 5706 2.037511 CGGTTAGGACACAAACCTACCA 59.962 50.000 0.00 0.00 42.51 3.25
291 5794 4.098914 TGCATGGGGTAGAATAATGGAC 57.901 45.455 0.00 0.00 0.00 4.02
322 5867 3.191078 TGGGAGTTGCAAAATGGTTTG 57.809 42.857 0.00 0.00 45.88 2.93
323 5868 3.922171 TTGGGAGTTGCAAAATGGTTT 57.078 38.095 0.00 0.00 0.00 3.27
324 5869 3.922171 TTTGGGAGTTGCAAAATGGTT 57.078 38.095 0.00 0.00 0.00 3.67
393 6117 1.465387 TGCGTGTTCACGTCAAAGTTT 59.535 42.857 22.85 0.00 35.26 2.66
394 6118 1.080298 TGCGTGTTCACGTCAAAGTT 58.920 45.000 22.85 0.00 35.26 2.66
491 8688 8.945193 AGGGCATATTATTTAGTCCTAGTTTGA 58.055 33.333 0.00 0.00 0.00 2.69
492 8689 9.003658 CAGGGCATATTATTTAGTCCTAGTTTG 57.996 37.037 0.00 0.00 0.00 2.93
493 8690 8.724310 ACAGGGCATATTATTTAGTCCTAGTTT 58.276 33.333 0.00 0.00 0.00 2.66
496 8693 7.819900 GTCACAGGGCATATTATTTAGTCCTAG 59.180 40.741 0.00 0.00 0.00 3.02
501 8705 7.071196 TCTCAGTCACAGGGCATATTATTTAGT 59.929 37.037 0.00 0.00 0.00 2.24
505 8818 5.604231 TCTCTCAGTCACAGGGCATATTATT 59.396 40.000 0.00 0.00 0.00 1.40
508 8821 3.378512 TCTCTCAGTCACAGGGCATATT 58.621 45.455 0.00 0.00 0.00 1.28
535 8848 1.256812 GGCCATGGTGTTAAAGTGCT 58.743 50.000 14.67 0.00 0.00 4.40
543 8856 0.623723 AGTTATCGGGCCATGGTGTT 59.376 50.000 14.67 1.88 0.00 3.32
556 8871 5.759963 CGGTACACTATCACTGGAGTTATC 58.240 45.833 0.00 0.00 0.00 1.75
558 8873 3.379372 GCGGTACACTATCACTGGAGTTA 59.621 47.826 0.00 0.00 0.00 2.24
559 8874 2.165845 GCGGTACACTATCACTGGAGTT 59.834 50.000 0.00 0.00 0.00 3.01
573 8888 2.638354 CCACCGGTGTAGCGGTACA 61.638 63.158 31.80 22.78 36.65 2.90
578 8893 0.244450 TTCTTACCACCGGTGTAGCG 59.756 55.000 31.80 19.28 36.19 4.26
581 8896 6.594937 GTCAATTTATTCTTACCACCGGTGTA 59.405 38.462 31.80 20.67 36.19 2.90
596 8911 5.136816 TGCACTGCACATGTCAATTTATT 57.863 34.783 0.00 0.00 31.71 1.40
607 8922 1.538512 GTGAGTTCATGCACTGCACAT 59.461 47.619 5.67 0.00 43.04 3.21
611 8926 3.240069 GAAATGTGAGTTCATGCACTGC 58.760 45.455 1.66 0.00 36.05 4.40
612 8927 3.058708 ACGAAATGTGAGTTCATGCACTG 60.059 43.478 1.66 0.00 36.05 3.66
613 8928 3.141398 ACGAAATGTGAGTTCATGCACT 58.859 40.909 0.00 0.00 36.05 4.40
637 10253 2.362120 GCCATGACAAGCAGGCCT 60.362 61.111 0.00 0.00 41.25 5.19
642 10258 2.672651 CCCGTGCCATGACAAGCA 60.673 61.111 0.00 0.00 36.44 3.91
738 11373 0.937699 TGCGAAAGTGTTCCTCGACG 60.938 55.000 0.00 0.00 34.52 5.12
833 11488 3.825160 TTGGGAGCGTGCACCTGTC 62.825 63.158 12.15 5.22 0.00 3.51
902 11602 2.290960 GGATGTAGGAACAGGGCTTTGT 60.291 50.000 0.00 0.00 39.49 2.83
921 11625 2.431683 GCTTGAGCTGGTGGTGGA 59.568 61.111 0.00 0.00 38.21 4.02
932 11682 0.676151 GGAGGCAGTTGAGGCTTGAG 60.676 60.000 0.00 0.00 45.32 3.02
933 11683 1.376466 GGAGGCAGTTGAGGCTTGA 59.624 57.895 0.00 0.00 45.32 3.02
934 11684 1.073722 TGGAGGCAGTTGAGGCTTG 59.926 57.895 0.00 0.00 45.32 4.01
935 11685 1.073897 GTGGAGGCAGTTGAGGCTT 59.926 57.895 0.00 0.00 45.32 4.35
937 11687 1.968540 GTGTGGAGGCAGTTGAGGC 60.969 63.158 0.00 0.00 0.00 4.70
938 11688 1.302832 GGTGTGGAGGCAGTTGAGG 60.303 63.158 0.00 0.00 0.00 3.86
951 11705 1.102154 TGTTCCTTGCAGTTGGTGTG 58.898 50.000 0.00 0.00 0.00 3.82
1346 12126 4.466015 TCACACATTAGCTACTCATGTCCA 59.534 41.667 6.57 0.00 27.38 4.02
1355 12135 7.519008 GCATTCTACCAATCACACATTAGCTAC 60.519 40.741 0.00 0.00 0.00 3.58
1362 12145 4.951715 ACATGCATTCTACCAATCACACAT 59.048 37.500 0.00 0.00 0.00 3.21
1381 12166 0.592637 TTTCGCAGGCAGAACACATG 59.407 50.000 0.00 0.00 0.00 3.21
1391 12189 0.169009 GATGAACCACTTTCGCAGGC 59.831 55.000 0.00 0.00 36.97 4.85
1392 12190 1.466167 CAGATGAACCACTTTCGCAGG 59.534 52.381 0.00 0.00 36.97 4.85
1393 12191 1.466167 CCAGATGAACCACTTTCGCAG 59.534 52.381 0.00 0.00 36.97 5.18
1394 12192 1.202758 ACCAGATGAACCACTTTCGCA 60.203 47.619 0.00 0.00 36.97 5.10
1416 12214 7.120432 AGAGAAGCTCCAATCAAAAGTAATCAC 59.880 37.037 0.00 0.00 0.00 3.06
1422 12220 4.978099 TGAGAGAAGCTCCAATCAAAAGT 58.022 39.130 0.00 0.00 43.26 2.66
1628 14709 0.663153 GCTGTTTGGACTGTGGACAC 59.337 55.000 0.00 0.00 0.00 3.67
1632 14713 0.179020 TCTGGCTGTTTGGACTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
1636 14717 3.027419 GCTTCTGGCTGTTTGGACT 57.973 52.632 0.00 0.00 38.06 3.85
1661 14742 7.040823 ACTCAGCTTGGAGAAATGAAAGTAAAG 60.041 37.037 8.00 0.00 38.30 1.85
1669 14750 2.373169 ACCACTCAGCTTGGAGAAATGA 59.627 45.455 9.96 0.00 38.30 2.57
1682 14767 1.961277 GCACGGGTCAACCACTCAG 60.961 63.158 0.89 0.00 40.22 3.35
1745 14868 6.312399 CTGGCTGTTGTCAGTTGTTTTATA 57.688 37.500 0.00 0.00 40.77 0.98
1789 14922 7.321153 TCTAATGTACTCTTGGAGTTGTTAGC 58.679 38.462 5.50 0.00 40.28 3.09
1796 14929 5.020132 AGCACTCTAATGTACTCTTGGAGT 58.980 41.667 16.44 16.44 45.54 3.85
1802 14935 7.889873 ATCAGTTAGCACTCTAATGTACTCT 57.110 36.000 0.00 0.00 37.16 3.24
1803 14936 7.043059 GCAATCAGTTAGCACTCTAATGTACTC 60.043 40.741 0.00 0.00 37.16 2.59
1817 14957 3.831715 AGGAAAACGCAATCAGTTAGC 57.168 42.857 0.00 0.00 0.00 3.09
1822 15050 7.282916 CAAAATTACAAGGAAAACGCAATCAG 58.717 34.615 0.00 0.00 0.00 2.90
1824 15052 6.070829 GCAAAATTACAAGGAAAACGCAATC 58.929 36.000 0.00 0.00 0.00 2.67
1827 15055 3.804873 GGCAAAATTACAAGGAAAACGCA 59.195 39.130 0.00 0.00 0.00 5.24
1854 15089 4.836125 AAGACATGTTCGTGCATCTTTT 57.164 36.364 0.00 0.00 0.00 2.27
1866 15101 5.373222 TGCAACTAGTGGTTAAGACATGTT 58.627 37.500 0.00 0.00 36.23 2.71
1879 15114 0.179181 CTGCCGCATTGCAACTAGTG 60.179 55.000 0.00 1.31 41.51 2.74
1882 15117 2.699768 GCCTGCCGCATTGCAACTA 61.700 57.895 0.00 0.00 41.51 2.24
1930 15171 3.194542 CCACTGAGGTTCCTAGTCTGAAG 59.805 52.174 0.00 0.00 0.00 3.02
1937 15247 4.081586 GGTAAGTTCCACTGAGGTTCCTAG 60.082 50.000 0.00 0.00 39.02 3.02
1947 15257 5.794894 ACAAGATGTAGGTAAGTTCCACTG 58.205 41.667 0.00 0.00 0.00 3.66
1962 15272 6.596888 TGTACTACTACTAGCGAACAAGATGT 59.403 38.462 0.00 0.00 0.00 3.06
2029 15344 6.358178 TGTTAAACCTTGATCCACACAAGTA 58.642 36.000 0.00 0.00 41.88 2.24
2034 15353 5.009610 ACACATGTTAAACCTTGATCCACAC 59.990 40.000 0.00 0.00 0.00 3.82
2077 15396 1.056700 ACCACCTTCAGCTCACCTGT 61.057 55.000 0.00 0.00 42.38 4.00
2346 15689 1.375551 GGTCGGTGCGGTTGATTTAT 58.624 50.000 0.00 0.00 0.00 1.40
2375 15718 3.584834 GCTTATGGTGCCGTTGATTTTT 58.415 40.909 0.00 0.00 0.00 1.94
2376 15719 2.094234 GGCTTATGGTGCCGTTGATTTT 60.094 45.455 0.00 0.00 41.03 1.82
2377 15720 1.476488 GGCTTATGGTGCCGTTGATTT 59.524 47.619 0.00 0.00 41.03 2.17
2378 15721 1.102978 GGCTTATGGTGCCGTTGATT 58.897 50.000 0.00 0.00 41.03 2.57
2385 15728 0.818040 CCTAACCGGCTTATGGTGCC 60.818 60.000 0.00 0.00 46.42 5.01
2386 15729 0.107361 ACCTAACCGGCTTATGGTGC 60.107 55.000 0.00 0.00 40.35 5.01
2393 15736 1.640917 TTCTCAGACCTAACCGGCTT 58.359 50.000 0.00 0.00 35.61 4.35
2398 15741 9.551734 TTTTAGTAACTTTTCTCAGACCTAACC 57.448 33.333 0.00 0.00 0.00 2.85
2408 15758 9.932699 GGTTCAGTTCTTTTAGTAACTTTTCTC 57.067 33.333 0.00 0.00 33.72 2.87
2440 15798 1.672356 AGCAGCGAACCACACCATC 60.672 57.895 0.00 0.00 0.00 3.51
2501 15866 2.147387 ACACGAGGAGGCCCTTTGT 61.147 57.895 0.00 0.00 44.53 2.83
2521 15886 1.348036 AGGTGGCAGTACTCAAACTCC 59.652 52.381 0.00 0.00 0.00 3.85
2535 15900 9.923143 AATTCACTTAACTAATTAAAAGGTGGC 57.077 29.630 0.00 0.00 30.48 5.01
2640 16007 0.981183 ACATTAGACCCGCAACTCCA 59.019 50.000 0.00 0.00 0.00 3.86
2649 16016 2.292267 CATGACAGCCACATTAGACCC 58.708 52.381 0.00 0.00 0.00 4.46
2759 16132 2.816087 GCGGCCTCATCATACATTTGAT 59.184 45.455 0.00 0.00 36.79 2.57
2760 16133 2.221169 GCGGCCTCATCATACATTTGA 58.779 47.619 0.00 0.00 0.00 2.69
2761 16134 1.948834 TGCGGCCTCATCATACATTTG 59.051 47.619 0.00 0.00 0.00 2.32
2762 16135 2.346766 TGCGGCCTCATCATACATTT 57.653 45.000 0.00 0.00 0.00 2.32
2765 16138 2.346766 AAATGCGGCCTCATCATACA 57.653 45.000 9.06 0.00 0.00 2.29
2770 16147 0.451783 AACGAAAATGCGGCCTCATC 59.548 50.000 9.06 0.00 35.12 2.92
2776 16153 0.039527 AAGGACAACGAAAATGCGGC 60.040 50.000 0.00 0.00 35.12 6.53
2779 16156 3.712187 TGGAAAAGGACAACGAAAATGC 58.288 40.909 0.00 0.00 0.00 3.56
2786 16163 3.563808 TGTCTCAATGGAAAAGGACAACG 59.436 43.478 0.00 0.00 31.99 4.10
2787 16164 5.712152 ATGTCTCAATGGAAAAGGACAAC 57.288 39.130 0.00 0.00 37.28 3.32
2788 16165 6.098124 ACAAATGTCTCAATGGAAAAGGACAA 59.902 34.615 0.00 0.00 37.28 3.18
2789 16166 5.598005 ACAAATGTCTCAATGGAAAAGGACA 59.402 36.000 0.00 0.00 37.94 4.02
2799 16176 5.005740 TCCTCCAGAACAAATGTCTCAATG 58.994 41.667 0.00 0.00 0.00 2.82
2802 16179 3.557898 GCTCCTCCAGAACAAATGTCTCA 60.558 47.826 0.00 0.00 0.00 3.27
2803 16180 3.006247 GCTCCTCCAGAACAAATGTCTC 58.994 50.000 0.00 0.00 0.00 3.36
2804 16181 2.290577 GGCTCCTCCAGAACAAATGTCT 60.291 50.000 0.00 0.00 34.01 3.41
2805 16182 2.087646 GGCTCCTCCAGAACAAATGTC 58.912 52.381 0.00 0.00 34.01 3.06
2824 16201 7.923414 AGTTGTTAGTATAAGGAAAAGCAGG 57.077 36.000 0.00 0.00 0.00 4.85
2833 16210 9.298774 GCTTACACTGTAGTTGTTAGTATAAGG 57.701 37.037 0.00 0.00 33.96 2.69
2840 16217 7.376615 AGGTAAGCTTACACTGTAGTTGTTAG 58.623 38.462 31.98 0.00 35.37 2.34
2841 16218 7.294017 AGGTAAGCTTACACTGTAGTTGTTA 57.706 36.000 31.98 0.00 35.37 2.41
2845 16222 4.995487 GCAAGGTAAGCTTACACTGTAGTT 59.005 41.667 31.98 13.80 35.37 2.24
2847 16224 3.612860 CGCAAGGTAAGCTTACACTGTAG 59.387 47.826 31.98 21.48 35.37 2.74
2848 16225 3.256383 TCGCAAGGTAAGCTTACACTGTA 59.744 43.478 31.98 18.74 35.37 2.74
2849 16226 2.036733 TCGCAAGGTAAGCTTACACTGT 59.963 45.455 31.98 14.59 35.37 3.55
2850 16227 2.683968 TCGCAAGGTAAGCTTACACTG 58.316 47.619 31.98 27.13 35.37 3.66
2854 16873 3.249080 TGTTGTTCGCAAGGTAAGCTTAC 59.751 43.478 25.52 25.52 37.85 2.34
2863 16882 5.977129 AGTATTTTTCTTGTTGTTCGCAAGG 59.023 36.000 5.39 0.00 42.44 3.61
2902 16921 9.502091 AGTATAAGCTTATCTTGTGAACAACAA 57.498 29.630 22.09 0.00 46.66 2.83
2907 16926 9.465985 GGAGTAGTATAAGCTTATCTTGTGAAC 57.534 37.037 22.09 12.77 36.25 3.18
2908 16927 8.639761 GGGAGTAGTATAAGCTTATCTTGTGAA 58.360 37.037 22.09 0.39 36.25 3.18
2909 16928 8.005388 AGGGAGTAGTATAAGCTTATCTTGTGA 58.995 37.037 22.09 1.15 36.25 3.58
2910 16929 8.184304 AGGGAGTAGTATAAGCTTATCTTGTG 57.816 38.462 22.09 0.00 36.25 3.33
2911 16930 7.452189 GGAGGGAGTAGTATAAGCTTATCTTGT 59.548 40.741 22.09 8.32 36.25 3.16
2912 16931 7.362229 CGGAGGGAGTAGTATAAGCTTATCTTG 60.362 44.444 22.09 4.78 36.25 3.02
2913 16932 6.660094 CGGAGGGAGTAGTATAAGCTTATCTT 59.340 42.308 22.09 13.72 38.79 2.40
2914 16933 6.181908 CGGAGGGAGTAGTATAAGCTTATCT 58.818 44.000 22.09 19.02 0.00 1.98
2915 16934 5.945191 ACGGAGGGAGTAGTATAAGCTTATC 59.055 44.000 22.09 13.55 0.00 1.75
2916 16935 5.890049 ACGGAGGGAGTAGTATAAGCTTAT 58.110 41.667 22.09 22.09 0.00 1.73
2917 16936 5.316158 ACGGAGGGAGTAGTATAAGCTTA 57.684 43.478 8.99 8.99 0.00 3.09
2918 16937 4.181799 ACGGAGGGAGTAGTATAAGCTT 57.818 45.455 3.48 3.48 0.00 3.74
2919 16938 3.880168 ACGGAGGGAGTAGTATAAGCT 57.120 47.619 0.00 0.00 0.00 3.74
2920 16939 4.143543 AGAACGGAGGGAGTAGTATAAGC 58.856 47.826 0.00 0.00 0.00 3.09
2921 16940 7.814264 TTAAGAACGGAGGGAGTAGTATAAG 57.186 40.000 0.00 0.00 0.00 1.73
2922 16941 8.773033 ATTTAAGAACGGAGGGAGTAGTATAA 57.227 34.615 0.00 0.00 0.00 0.98
2924 16943 8.953223 ATATTTAAGAACGGAGGGAGTAGTAT 57.047 34.615 0.00 0.00 0.00 2.12
2925 16944 9.866655 TTATATTTAAGAACGGAGGGAGTAGTA 57.133 33.333 0.00 0.00 0.00 1.82
2926 16945 8.773033 TTATATTTAAGAACGGAGGGAGTAGT 57.227 34.615 0.00 0.00 0.00 2.73
2927 16946 8.858094 ACTTATATTTAAGAACGGAGGGAGTAG 58.142 37.037 9.58 0.00 38.56 2.57
2928 16947 8.773033 ACTTATATTTAAGAACGGAGGGAGTA 57.227 34.615 9.58 0.00 38.56 2.59
2929 16948 7.672122 ACTTATATTTAAGAACGGAGGGAGT 57.328 36.000 9.58 0.00 38.56 3.85
2964 16983 9.642343 AGTGTCATCATAACTACTCCAATAGTA 57.358 33.333 0.00 0.00 39.80 1.82
2965 16984 8.540507 AGTGTCATCATAACTACTCCAATAGT 57.459 34.615 0.00 0.00 42.62 2.12
2966 16985 9.469807 GAAGTGTCATCATAACTACTCCAATAG 57.530 37.037 0.00 0.00 0.00 1.73
2967 16986 8.135529 CGAAGTGTCATCATAACTACTCCAATA 58.864 37.037 0.00 0.00 0.00 1.90
2968 16987 6.980978 CGAAGTGTCATCATAACTACTCCAAT 59.019 38.462 0.00 0.00 0.00 3.16
2969 16988 6.330278 CGAAGTGTCATCATAACTACTCCAA 58.670 40.000 0.00 0.00 0.00 3.53
2970 16989 5.163550 CCGAAGTGTCATCATAACTACTCCA 60.164 44.000 0.00 0.00 0.00 3.86
2971 16990 5.282510 CCGAAGTGTCATCATAACTACTCC 58.717 45.833 0.00 0.00 0.00 3.85
2972 16991 5.282510 CCCGAAGTGTCATCATAACTACTC 58.717 45.833 0.00 0.00 0.00 2.59
2973 16992 4.099573 CCCCGAAGTGTCATCATAACTACT 59.900 45.833 0.00 0.00 0.00 2.57
2974 16993 4.142004 ACCCCGAAGTGTCATCATAACTAC 60.142 45.833 0.00 0.00 0.00 2.73
2975 16994 4.028131 ACCCCGAAGTGTCATCATAACTA 58.972 43.478 0.00 0.00 0.00 2.24
2976 16995 2.838202 ACCCCGAAGTGTCATCATAACT 59.162 45.455 0.00 0.00 0.00 2.24
2977 16996 2.936498 CACCCCGAAGTGTCATCATAAC 59.064 50.000 0.00 0.00 32.89 1.89
2978 16997 2.679639 GCACCCCGAAGTGTCATCATAA 60.680 50.000 6.64 0.00 40.04 1.90
2979 16998 1.134521 GCACCCCGAAGTGTCATCATA 60.135 52.381 6.64 0.00 40.04 2.15
2980 16999 0.392998 GCACCCCGAAGTGTCATCAT 60.393 55.000 6.64 0.00 40.04 2.45
2981 17000 1.003839 GCACCCCGAAGTGTCATCA 60.004 57.895 6.64 0.00 40.04 3.07
2982 17001 1.003839 TGCACCCCGAAGTGTCATC 60.004 57.895 6.64 0.00 40.04 2.92
2983 17002 1.003355 CTGCACCCCGAAGTGTCAT 60.003 57.895 6.64 0.00 40.04 3.06
2984 17003 1.691195 TTCTGCACCCCGAAGTGTCA 61.691 55.000 6.64 4.83 40.04 3.58
2985 17004 0.534203 TTTCTGCACCCCGAAGTGTC 60.534 55.000 6.64 1.08 40.04 3.67
2986 17005 0.106918 TTTTCTGCACCCCGAAGTGT 60.107 50.000 6.64 0.00 40.04 3.55
2987 17006 1.028905 TTTTTCTGCACCCCGAAGTG 58.971 50.000 0.87 0.87 40.88 3.16
2988 17007 1.613437 CATTTTTCTGCACCCCGAAGT 59.387 47.619 0.00 0.00 0.00 3.01
2989 17008 1.669795 GCATTTTTCTGCACCCCGAAG 60.670 52.381 0.00 0.00 41.87 3.79
2990 17009 0.316841 GCATTTTTCTGCACCCCGAA 59.683 50.000 0.00 0.00 41.87 4.30
2991 17010 0.539438 AGCATTTTTCTGCACCCCGA 60.539 50.000 0.00 0.00 44.77 5.14
2992 17011 0.318120 AAGCATTTTTCTGCACCCCG 59.682 50.000 0.00 0.00 44.77 5.73
2993 17012 1.620323 AGAAGCATTTTTCTGCACCCC 59.380 47.619 0.00 0.00 44.77 4.95
2994 17013 2.680577 CAGAAGCATTTTTCTGCACCC 58.319 47.619 3.15 0.00 45.21 4.61
3000 17019 6.532657 CGGCATAAATTCAGAAGCATTTTTCT 59.467 34.615 0.00 0.00 37.90 2.52
3001 17020 6.311200 ACGGCATAAATTCAGAAGCATTTTTC 59.689 34.615 0.00 0.00 0.00 2.29
3009 17028 3.763097 TGCACGGCATAAATTCAGAAG 57.237 42.857 0.00 0.00 31.71 2.85
3024 17043 3.070018 ACCTCTGAGAAATCTTTGCACG 58.930 45.455 6.17 0.00 0.00 5.34
3025 17044 3.365767 GCACCTCTGAGAAATCTTTGCAC 60.366 47.826 6.17 0.00 0.00 4.57
3028 17047 4.615452 GCTTGCACCTCTGAGAAATCTTTG 60.615 45.833 6.17 0.00 0.00 2.77
3029 17048 3.505293 GCTTGCACCTCTGAGAAATCTTT 59.495 43.478 6.17 0.00 0.00 2.52
3030 17049 3.080319 GCTTGCACCTCTGAGAAATCTT 58.920 45.455 6.17 0.00 0.00 2.40
3032 17051 2.709213 AGCTTGCACCTCTGAGAAATC 58.291 47.619 6.17 0.00 0.00 2.17
3039 17058 4.024218 GCTCATATTAAGCTTGCACCTCTG 60.024 45.833 9.86 0.00 36.80 3.35
3042 17061 2.874701 CGCTCATATTAAGCTTGCACCT 59.125 45.455 9.86 0.00 37.62 4.00
3051 17070 2.097396 CCGTTCGTGCGCTCATATTAAG 60.097 50.000 9.73 0.00 0.00 1.85
3052 17071 1.855978 CCGTTCGTGCGCTCATATTAA 59.144 47.619 9.73 0.00 0.00 1.40
3061 17080 2.154569 GTAGTACCCGTTCGTGCGC 61.155 63.158 0.00 0.00 0.00 6.09
3066 17085 4.425577 ACAAACTAGTAGTACCCGTTCG 57.574 45.455 2.50 0.00 0.00 3.95
3072 17091 4.151867 GCACAGCAACAAACTAGTAGTACC 59.848 45.833 2.50 0.00 0.00 3.34
3075 17094 4.073293 AGCACAGCAACAAACTAGTAGT 57.927 40.909 0.00 0.00 0.00 2.73
3078 17097 2.800544 CGTAGCACAGCAACAAACTAGT 59.199 45.455 0.00 0.00 0.00 2.57
3087 17106 3.069443 TCATCATATCCGTAGCACAGCAA 59.931 43.478 0.00 0.00 0.00 3.91
3089 17108 3.303881 TCATCATATCCGTAGCACAGC 57.696 47.619 0.00 0.00 0.00 4.40
3093 17112 5.659440 TTAGCATCATCATATCCGTAGCA 57.341 39.130 0.00 0.00 0.00 3.49
3097 17116 7.316640 GTCTACTTTAGCATCATCATATCCGT 58.683 38.462 0.00 0.00 0.00 4.69
3099 17118 6.754209 CCGTCTACTTTAGCATCATCATATCC 59.246 42.308 0.00 0.00 0.00 2.59
3105 17124 2.726760 CGCCGTCTACTTTAGCATCATC 59.273 50.000 0.00 0.00 0.00 2.92
3114 17133 0.246635 ATCAGTGCGCCGTCTACTTT 59.753 50.000 4.18 0.00 0.00 2.66
3118 17137 1.065102 GAACTATCAGTGCGCCGTCTA 59.935 52.381 4.18 0.00 0.00 2.59
3133 17152 0.321671 GGCACAGTGAGCTGGAACTA 59.678 55.000 12.42 0.00 46.62 2.24
3146 17165 5.819379 ACTACAGATGATTAATGTGGCACAG 59.181 40.000 26.04 10.30 41.80 3.66
3162 17181 9.241919 CATATCTAGTCATCTTCCACTACAGAT 57.758 37.037 0.00 0.00 0.00 2.90
3190 17209 4.277476 ACAAGTCACAAACCAATTCAGGA 58.723 39.130 0.00 0.00 0.00 3.86
3209 17228 4.898265 TCATGTCTGAAAAATGGGGAACAA 59.102 37.500 0.00 0.00 0.00 2.83
3267 17286 0.239347 CAGGCTGCACAAAGCTACAC 59.761 55.000 0.00 0.00 45.94 2.90
3289 17308 3.040763 GGAGATCGCCGATGCTGC 61.041 66.667 3.34 3.33 34.43 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.