Multiple sequence alignment - TraesCS2A01G320800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G320800 chr2A 100.000 4596 0 0 1 4596 550539964 550535369 0.000000e+00 8488
1 TraesCS2A01G320800 chr2A 88.554 166 9 4 1674 1836 594659206 594659364 4.690000e-45 193
2 TraesCS2A01G320800 chr2A 89.552 134 8 4 4464 4592 622697474 622697342 1.020000e-36 165
3 TraesCS2A01G320800 chr2A 79.661 177 23 9 1674 1840 576794745 576794918 1.040000e-21 115
4 TraesCS2A01G320800 chr2B 90.347 2538 154 42 1842 4336 514866503 514868992 0.000000e+00 3245
5 TraesCS2A01G320800 chr2B 93.321 1617 71 15 3 1584 514864733 514866347 0.000000e+00 2353
6 TraesCS2A01G320800 chr2B 85.530 387 37 12 1200 1568 30333224 30332839 2.010000e-103 387
7 TraesCS2A01G320800 chr2D 90.379 2245 137 36 1842 4043 436368188 436365980 0.000000e+00 2876
8 TraesCS2A01G320800 chr2D 92.254 1704 80 21 11 1673 436369874 436368182 0.000000e+00 2368
9 TraesCS2A01G320800 chr2D 85.638 188 13 9 1670 1854 516332626 516332450 7.850000e-43 185
10 TraesCS2A01G320800 chr2D 89.231 130 13 1 4464 4592 644149927 644149798 1.320000e-35 161
11 TraesCS2A01G320800 chr6A 78.078 666 114 24 2355 3014 384968085 384967446 4.310000e-105 392
12 TraesCS2A01G320800 chr6A 90.110 182 16 2 3129 3309 384967353 384967173 7.690000e-58 235
13 TraesCS2A01G320800 chr6A 90.909 132 9 1 4464 4592 5939213 5939082 1.700000e-39 174
14 TraesCS2A01G320800 chr6D 75.858 874 152 40 2166 3014 271006902 271007741 1.550000e-104 390
15 TraesCS2A01G320800 chr6D 91.477 176 9 4 1673 1846 316623094 316622923 2.140000e-58 237
16 TraesCS2A01G320800 chr6D 89.730 185 17 2 3126 3309 271007831 271008014 7.690000e-58 235
17 TraesCS2A01G320800 chr6D 92.754 138 5 3 1673 1808 316230422 316230288 1.300000e-45 195
18 TraesCS2A01G320800 chr5B 83.459 399 34 17 1200 1568 649446541 649446145 4.400000e-90 342
19 TraesCS2A01G320800 chr5B 89.231 130 13 1 4464 4592 417444059 417443930 1.320000e-35 161
20 TraesCS2A01G320800 chr1D 91.124 169 8 3 1673 1839 473449043 473449206 5.980000e-54 222
21 TraesCS2A01G320800 chr3A 90.533 169 8 4 1673 1839 628191904 628191742 2.780000e-52 217
22 TraesCS2A01G320800 chr4D 88.000 175 10 5 1671 1842 6777339 6777173 3.630000e-46 196
23 TraesCS2A01G320800 chr4D 89.552 134 11 1 4462 4592 6660753 6660886 2.840000e-37 167
24 TraesCS2A01G320800 chr4A 86.628 172 13 5 1674 1838 95933033 95933201 1.020000e-41 182
25 TraesCS2A01G320800 chr4A 86.127 173 13 6 1674 1840 13582713 13582546 4.730000e-40 176
26 TraesCS2A01G320800 chr5D 89.394 132 11 1 4464 4592 384072222 384072353 3.680000e-36 163
27 TraesCS2A01G320800 chr7B 89.394 132 9 3 4465 4592 663743441 663743571 1.320000e-35 161
28 TraesCS2A01G320800 chrUn 85.455 165 10 6 4440 4592 85304463 85304301 4.760000e-35 159
29 TraesCS2A01G320800 chr7A 88.722 133 10 3 4464 4592 323448568 323448437 1.710000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G320800 chr2A 550535369 550539964 4595 True 8488.0 8488 100.0000 1 4596 1 chr2A.!!$R1 4595
1 TraesCS2A01G320800 chr2B 514864733 514868992 4259 False 2799.0 3245 91.8340 3 4336 2 chr2B.!!$F1 4333
2 TraesCS2A01G320800 chr2D 436365980 436369874 3894 True 2622.0 2876 91.3165 11 4043 2 chr2D.!!$R3 4032
3 TraesCS2A01G320800 chr6A 384967173 384968085 912 True 313.5 392 84.0940 2355 3309 2 chr6A.!!$R2 954
4 TraesCS2A01G320800 chr6D 271006902 271008014 1112 False 312.5 390 82.7940 2166 3309 2 chr6D.!!$F1 1143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 886 1.519758 CGGTGCCGATTAATACACGTC 59.480 52.381 4.35 0.0 42.83 4.34 F
1739 1864 0.457443 GCTCCCACAAATAAGGCAGC 59.543 55.000 0.00 0.0 0.00 5.25 F
2266 2409 0.107165 ATAAGGGTTGGCGAGAAGGC 60.107 55.000 0.00 0.0 46.95 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 1946 1.427753 TCAGGGTCTGTCTAGGACACA 59.572 52.381 3.18 0.0 39.36 3.72 R
3430 3595 1.226773 CCCAGCAGCAATAAAGCGC 60.227 57.895 0.00 0.0 40.15 5.92 R
3787 3962 0.036388 TGGTCTGCAATTCCCTCGAC 60.036 55.000 0.00 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.924111 CACAACCTGTGGCTATTAGATTTTT 58.076 36.000 0.00 0.00 44.27 1.94
42 43 7.277174 ACCTGTGGCTATTAGATTTTTATGC 57.723 36.000 0.00 0.00 0.00 3.14
104 122 6.371548 GCACTAATTAACAGTCCAATGAGACA 59.628 38.462 5.04 0.00 39.34 3.41
105 123 7.624344 GCACTAATTAACAGTCCAATGAGACAC 60.624 40.741 5.04 0.00 39.34 3.67
106 124 7.387673 CACTAATTAACAGTCCAATGAGACACA 59.612 37.037 5.04 0.00 39.34 3.72
107 125 7.936847 ACTAATTAACAGTCCAATGAGACACAA 59.063 33.333 5.04 0.00 39.34 3.33
108 126 7.765695 AATTAACAGTCCAATGAGACACAAT 57.234 32.000 5.04 0.00 39.34 2.71
109 127 7.765695 ATTAACAGTCCAATGAGACACAATT 57.234 32.000 5.04 0.00 39.34 2.32
110 128 7.581213 TTAACAGTCCAATGAGACACAATTT 57.419 32.000 5.04 0.00 39.34 1.82
111 129 6.469782 AACAGTCCAATGAGACACAATTTT 57.530 33.333 5.04 0.00 39.34 1.82
124 154 6.533730 AGACACAATTTTCAGTCACATAGGA 58.466 36.000 0.00 0.00 33.56 2.94
217 247 2.775384 AGTAAATCACCTTGCCCGGATA 59.225 45.455 0.73 0.00 0.00 2.59
748 778 1.533469 CGGAGGGACGAAACTGGAGT 61.533 60.000 0.00 0.00 35.47 3.85
764 794 4.309950 GTTGGGCTCGGTCGGTGT 62.310 66.667 0.00 0.00 0.00 4.16
856 886 1.519758 CGGTGCCGATTAATACACGTC 59.480 52.381 4.35 0.00 42.83 4.34
873 903 3.739300 CACGTCGAACCAGAATGTAAACT 59.261 43.478 0.00 0.00 0.00 2.66
1199 1240 3.062639 CGTGGGTCGGTTTAGGGT 58.937 61.111 0.00 0.00 35.71 4.34
1219 1260 1.269778 TGGTCTGATTCGATCCGATGC 60.270 52.381 0.00 0.00 35.23 3.91
1368 1409 1.040339 AGTGAGTGGATCTCTCCGGC 61.040 60.000 0.00 6.43 45.37 6.13
1372 1413 0.485099 AGTGGATCTCTCCGGCCTAT 59.515 55.000 0.00 0.00 45.37 2.57
1382 1424 2.777692 TCTCCGGCCTATCCTTTTTCAT 59.222 45.455 0.00 0.00 0.00 2.57
1449 1491 6.129168 GCCGTCGATACATCTAACATAGTTTG 60.129 42.308 0.00 0.00 0.00 2.93
1459 1501 6.620877 TCTAACATAGTTTGACCACTCCAT 57.379 37.500 0.00 0.00 0.00 3.41
1498 1540 1.446016 AGCCCTTAGAAACCCACAGT 58.554 50.000 0.00 0.00 0.00 3.55
1518 1564 3.437395 AGTGTTACGAGCTCTAGACTGTG 59.563 47.826 12.85 0.00 0.00 3.66
1525 1571 3.186119 GAGCTCTAGACTGTGATTGTGC 58.814 50.000 6.43 0.00 0.00 4.57
1562 1612 4.067896 TCTTGATGCTCCTGTTGTTTCTC 58.932 43.478 0.00 0.00 0.00 2.87
1602 1667 4.933505 ACTAACTAGTATTCGCCCTTCC 57.066 45.455 0.00 0.00 34.13 3.46
1693 1818 9.725019 TTGATACAGTTTGTCTAATTCACATCT 57.275 29.630 0.00 0.00 0.00 2.90
1723 1848 8.900983 ATTTTCTAAGGATGTCATCTAAGCTC 57.099 34.615 12.54 0.00 0.00 4.09
1724 1849 6.412362 TTCTAAGGATGTCATCTAAGCTCC 57.588 41.667 12.54 0.00 0.00 4.70
1725 1850 4.835615 TCTAAGGATGTCATCTAAGCTCCC 59.164 45.833 12.54 0.00 0.00 4.30
1726 1851 3.051940 AGGATGTCATCTAAGCTCCCA 57.948 47.619 12.54 0.00 0.00 4.37
1727 1852 2.703007 AGGATGTCATCTAAGCTCCCAC 59.297 50.000 12.54 0.00 0.00 4.61
1728 1853 2.435805 GGATGTCATCTAAGCTCCCACA 59.564 50.000 12.54 0.00 0.00 4.17
1729 1854 3.118261 GGATGTCATCTAAGCTCCCACAA 60.118 47.826 12.54 0.00 0.00 3.33
1730 1855 4.517285 GATGTCATCTAAGCTCCCACAAA 58.483 43.478 5.52 0.00 0.00 2.83
1731 1856 4.574674 TGTCATCTAAGCTCCCACAAAT 57.425 40.909 0.00 0.00 0.00 2.32
1732 1857 5.692115 TGTCATCTAAGCTCCCACAAATA 57.308 39.130 0.00 0.00 0.00 1.40
1733 1858 6.061022 TGTCATCTAAGCTCCCACAAATAA 57.939 37.500 0.00 0.00 0.00 1.40
1734 1859 6.115446 TGTCATCTAAGCTCCCACAAATAAG 58.885 40.000 0.00 0.00 0.00 1.73
1735 1860 5.529060 GTCATCTAAGCTCCCACAAATAAGG 59.471 44.000 0.00 0.00 0.00 2.69
1736 1861 3.886123 TCTAAGCTCCCACAAATAAGGC 58.114 45.455 0.00 0.00 0.00 4.35
1737 1862 2.603075 AAGCTCCCACAAATAAGGCA 57.397 45.000 0.00 0.00 0.00 4.75
1738 1863 2.134789 AGCTCCCACAAATAAGGCAG 57.865 50.000 0.00 0.00 0.00 4.85
1739 1864 0.457443 GCTCCCACAAATAAGGCAGC 59.543 55.000 0.00 0.00 0.00 5.25
1740 1865 1.838112 CTCCCACAAATAAGGCAGCA 58.162 50.000 0.00 0.00 0.00 4.41
1741 1866 2.170166 CTCCCACAAATAAGGCAGCAA 58.830 47.619 0.00 0.00 0.00 3.91
1742 1867 1.892474 TCCCACAAATAAGGCAGCAAC 59.108 47.619 0.00 0.00 0.00 4.17
1743 1868 1.617850 CCCACAAATAAGGCAGCAACA 59.382 47.619 0.00 0.00 0.00 3.33
1744 1869 2.036992 CCCACAAATAAGGCAGCAACAA 59.963 45.455 0.00 0.00 0.00 2.83
1745 1870 3.319755 CCACAAATAAGGCAGCAACAAG 58.680 45.455 0.00 0.00 0.00 3.16
1746 1871 3.319755 CACAAATAAGGCAGCAACAAGG 58.680 45.455 0.00 0.00 0.00 3.61
1747 1872 3.005684 CACAAATAAGGCAGCAACAAGGA 59.994 43.478 0.00 0.00 0.00 3.36
1748 1873 3.640967 ACAAATAAGGCAGCAACAAGGAA 59.359 39.130 0.00 0.00 0.00 3.36
1749 1874 3.942130 AATAAGGCAGCAACAAGGAAC 57.058 42.857 0.00 0.00 0.00 3.62
1750 1875 2.356665 TAAGGCAGCAACAAGGAACA 57.643 45.000 0.00 0.00 0.00 3.18
1751 1876 1.484038 AAGGCAGCAACAAGGAACAA 58.516 45.000 0.00 0.00 0.00 2.83
1752 1877 1.484038 AGGCAGCAACAAGGAACAAA 58.516 45.000 0.00 0.00 0.00 2.83
1753 1878 1.830477 AGGCAGCAACAAGGAACAAAA 59.170 42.857 0.00 0.00 0.00 2.44
1754 1879 2.235898 AGGCAGCAACAAGGAACAAAAA 59.764 40.909 0.00 0.00 0.00 1.94
1804 1929 4.952262 CACAAACATAGTGGACATCAGG 57.048 45.455 0.00 0.00 33.43 3.86
1805 1930 3.127548 CACAAACATAGTGGACATCAGGC 59.872 47.826 0.00 0.00 33.43 4.85
1806 1931 3.009473 ACAAACATAGTGGACATCAGGCT 59.991 43.478 0.00 0.00 0.00 4.58
1807 1932 4.225042 ACAAACATAGTGGACATCAGGCTA 59.775 41.667 0.00 0.00 0.00 3.93
1808 1933 5.104360 ACAAACATAGTGGACATCAGGCTAT 60.104 40.000 0.00 0.00 0.00 2.97
1809 1934 4.613925 ACATAGTGGACATCAGGCTATG 57.386 45.455 0.00 0.00 42.55 2.23
1810 1935 3.969976 ACATAGTGGACATCAGGCTATGT 59.030 43.478 9.01 9.01 44.00 2.29
1819 1944 5.465532 ACATCAGGCTATGTCACATCTAG 57.534 43.478 0.00 0.00 35.08 2.43
1820 1945 5.143369 ACATCAGGCTATGTCACATCTAGA 58.857 41.667 0.00 0.00 35.08 2.43
1821 1946 5.779260 ACATCAGGCTATGTCACATCTAGAT 59.221 40.000 0.00 0.00 35.08 1.98
1822 1947 5.718724 TCAGGCTATGTCACATCTAGATG 57.281 43.478 27.63 27.63 44.15 2.90
1823 1948 8.617330 ACATCAGGCTATGTCACATCTAGATGT 61.617 40.741 28.95 28.95 41.20 3.06
1836 1961 6.312399 CATCTAGATGTGTCCTAGACAGAC 57.688 45.833 22.42 0.00 43.57 3.51
1837 1962 4.783055 TCTAGATGTGTCCTAGACAGACC 58.217 47.826 0.00 0.00 43.57 3.85
1838 1963 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
1839 1964 2.313342 AGATGTGTCCTAGACAGACCCT 59.687 50.000 0.00 0.00 43.57 4.34
1840 1965 1.924731 TGTGTCCTAGACAGACCCTG 58.075 55.000 0.00 0.00 43.57 4.45
1841 1966 1.427753 TGTGTCCTAGACAGACCCTGA 59.572 52.381 0.00 0.00 43.57 3.86
1842 1967 2.043115 TGTGTCCTAGACAGACCCTGAT 59.957 50.000 0.00 0.00 43.57 2.90
1843 1968 3.100671 GTGTCCTAGACAGACCCTGATT 58.899 50.000 0.00 0.00 43.57 2.57
1844 1969 3.099905 TGTCCTAGACAGACCCTGATTG 58.900 50.000 0.45 0.00 37.67 2.67
1845 1970 3.245622 TGTCCTAGACAGACCCTGATTGA 60.246 47.826 0.45 0.00 37.67 2.57
1846 1971 3.964031 GTCCTAGACAGACCCTGATTGAT 59.036 47.826 0.45 0.00 35.18 2.57
1847 1972 5.141182 GTCCTAGACAGACCCTGATTGATA 58.859 45.833 0.45 0.00 35.18 2.15
1848 1973 5.777732 GTCCTAGACAGACCCTGATTGATAT 59.222 44.000 0.45 0.00 35.18 1.63
1849 1974 6.013379 TCCTAGACAGACCCTGATTGATATC 58.987 44.000 0.45 0.00 35.18 1.63
1865 1990 7.991460 TGATTGATATCATGAGATATGAAGGGC 59.009 37.037 6.17 0.00 45.25 5.19
1881 2006 4.398988 TGAAGGGCATACTAAAATGTGCTG 59.601 41.667 0.00 0.00 36.95 4.41
1929 2054 4.600062 TCTAGATCAGTAGTGGAACAGCA 58.400 43.478 0.00 0.00 41.80 4.41
1970 2095 9.248291 GAGAATTGATGTGTACACAAACAAATT 57.752 29.630 33.75 29.60 45.41 1.82
1975 2100 7.421599 TGATGTGTACACAAACAAATTACTGG 58.578 34.615 31.01 0.00 45.41 4.00
1980 2105 5.767816 ACACAAACAAATTACTGGTCTCC 57.232 39.130 0.00 0.00 0.00 3.71
2036 2179 5.910637 TTCTGCAAAGATTGAAAATGTGC 57.089 34.783 0.00 0.00 0.00 4.57
2037 2180 4.946445 TCTGCAAAGATTGAAAATGTGCA 58.054 34.783 0.00 0.00 38.13 4.57
2063 2206 8.519526 ACTCTTGTTATCTAGACTCTGAACTTG 58.480 37.037 0.00 0.00 0.00 3.16
2074 2217 6.451393 AGACTCTGAACTTGTGAAGTGTATC 58.549 40.000 0.00 0.00 41.91 2.24
2088 2231 4.015872 AGTGTATCGCTTCTTTTTCCCA 57.984 40.909 0.00 0.00 0.00 4.37
2106 2249 3.394274 TCCCACCTTCTGTTTCATCTGAA 59.606 43.478 0.00 0.00 0.00 3.02
2108 2251 4.397417 CCCACCTTCTGTTTCATCTGAATC 59.603 45.833 0.00 0.00 33.54 2.52
2109 2252 5.251764 CCACCTTCTGTTTCATCTGAATCT 58.748 41.667 0.00 0.00 33.54 2.40
2110 2253 5.123502 CCACCTTCTGTTTCATCTGAATCTG 59.876 44.000 0.00 0.00 33.54 2.90
2116 2259 8.515695 TTCTGTTTCATCTGAATCTGCATTAT 57.484 30.769 0.00 0.00 33.54 1.28
2121 2264 6.628919 TCATCTGAATCTGCATTATGTTGG 57.371 37.500 0.00 0.00 0.00 3.77
2122 2265 6.124340 TCATCTGAATCTGCATTATGTTGGT 58.876 36.000 0.00 0.00 0.00 3.67
2125 2268 7.230849 TCTGAATCTGCATTATGTTGGTTTT 57.769 32.000 0.00 0.00 0.00 2.43
2133 2276 5.757320 TGCATTATGTTGGTTTTGTTCTTGG 59.243 36.000 0.00 0.00 0.00 3.61
2143 2286 4.290969 GTTTTGTTCTTGGCTTCTACTGC 58.709 43.478 0.00 0.00 0.00 4.40
2153 2296 7.739825 TCTTGGCTTCTACTGCTTAATATCAT 58.260 34.615 0.00 0.00 0.00 2.45
2154 2297 8.213679 TCTTGGCTTCTACTGCTTAATATCATT 58.786 33.333 0.00 0.00 0.00 2.57
2155 2298 7.969536 TGGCTTCTACTGCTTAATATCATTC 57.030 36.000 0.00 0.00 0.00 2.67
2156 2299 7.508687 TGGCTTCTACTGCTTAATATCATTCA 58.491 34.615 0.00 0.00 0.00 2.57
2157 2300 7.992608 TGGCTTCTACTGCTTAATATCATTCAA 59.007 33.333 0.00 0.00 0.00 2.69
2266 2409 0.107165 ATAAGGGTTGGCGAGAAGGC 60.107 55.000 0.00 0.00 46.95 4.35
2289 2443 8.310382 AGGCATGTCTACATATCTAATGTCTTC 58.690 37.037 0.00 0.00 34.26 2.87
2294 2448 7.085116 GTCTACATATCTAATGTCTTCCACCG 58.915 42.308 0.00 0.00 33.76 4.94
2304 2458 2.171027 TGTCTTCCACCGTGTTAGGTTT 59.829 45.455 0.00 0.00 43.00 3.27
2311 2465 3.747529 CCACCGTGTTAGGTTTTCGTTAT 59.252 43.478 0.00 0.00 43.00 1.89
2577 2735 7.786178 TTATGATGTGTAATACTGAGCAACC 57.214 36.000 0.00 0.00 0.00 3.77
2668 2826 2.764314 GGCTTGTACTGCATGGCCG 61.764 63.158 0.00 0.00 40.43 6.13
2751 2909 5.568620 ATGAGTTGTTCCCCTATGATACC 57.431 43.478 0.00 0.00 0.00 2.73
2802 2960 0.533032 TCACATTGGACCGCGTATCA 59.467 50.000 4.92 0.00 0.00 2.15
2843 3001 7.118390 ACGTATTCATCTTTTCTCCTTCAAGTG 59.882 37.037 0.00 0.00 0.00 3.16
2864 3022 6.035843 AGTGTGCTTGTTTAACTTGAATGTG 58.964 36.000 0.00 0.00 0.00 3.21
2974 3135 4.434520 GGAGTTTCTCAATTCCCTCTACG 58.565 47.826 0.00 0.00 33.51 3.51
3103 3267 0.323451 GGTGGGGTTAGCTCTTTGGG 60.323 60.000 0.00 0.00 0.00 4.12
3107 3271 1.893137 GGGGTTAGCTCTTTGGGTTTG 59.107 52.381 0.00 0.00 0.00 2.93
3116 3280 4.946157 AGCTCTTTGGGTTTGTCATATCTG 59.054 41.667 0.00 0.00 0.00 2.90
3119 3283 5.640147 TCTTTGGGTTTGTCATATCTGGTT 58.360 37.500 0.00 0.00 0.00 3.67
3374 3538 3.118629 CCTGGTGCTGATACTGTGTATGT 60.119 47.826 0.00 0.00 0.00 2.29
3375 3539 4.115516 CTGGTGCTGATACTGTGTATGTC 58.884 47.826 0.00 0.00 0.00 3.06
3376 3540 3.769300 TGGTGCTGATACTGTGTATGTCT 59.231 43.478 0.00 0.00 0.00 3.41
3377 3541 4.115516 GGTGCTGATACTGTGTATGTCTG 58.884 47.826 0.00 0.00 0.00 3.51
3378 3542 4.382040 GGTGCTGATACTGTGTATGTCTGT 60.382 45.833 0.00 0.00 0.00 3.41
3379 3543 5.163550 GGTGCTGATACTGTGTATGTCTGTA 60.164 44.000 0.00 0.00 0.00 2.74
3380 3544 6.461648 GGTGCTGATACTGTGTATGTCTGTAT 60.462 42.308 0.00 0.00 34.39 2.29
3381 3545 6.419116 GTGCTGATACTGTGTATGTCTGTATG 59.581 42.308 0.00 0.00 32.79 2.39
3382 3546 6.321181 TGCTGATACTGTGTATGTCTGTATGA 59.679 38.462 0.00 0.00 32.79 2.15
3383 3547 7.014615 TGCTGATACTGTGTATGTCTGTATGAT 59.985 37.037 0.00 0.00 32.79 2.45
3640 3810 1.657804 CTCCTTGGACAACCCTACCT 58.342 55.000 0.00 0.00 35.38 3.08
3657 3827 4.715297 CCTACCTTACTCAAGCTTCCCTTA 59.285 45.833 0.00 0.00 31.00 2.69
3740 3911 1.993301 CAAAGGGAAAGAGGGGTAGGT 59.007 52.381 0.00 0.00 0.00 3.08
3741 3912 2.378886 CAAAGGGAAAGAGGGGTAGGTT 59.621 50.000 0.00 0.00 0.00 3.50
3774 3949 8.868522 TTCAATCTGAGGATTTGACTTGTAAT 57.131 30.769 0.00 0.00 39.87 1.89
3999 4180 5.551760 CAAGATTGCACGAAGGTTTCTAT 57.448 39.130 0.00 0.00 0.00 1.98
4004 4185 2.227865 TGCACGAAGGTTTCTATTTGGC 59.772 45.455 0.00 0.00 0.00 4.52
4023 4205 3.956199 TGGCATTCCTCTTTCATGATTCC 59.044 43.478 0.00 0.00 0.00 3.01
4045 4227 4.386761 CCCTCTCACAACCCATTCCAATAT 60.387 45.833 0.00 0.00 0.00 1.28
4051 4233 8.328758 TCTCACAACCCATTCCAATATATATCC 58.671 37.037 0.00 0.00 0.00 2.59
4066 4248 1.108776 TATCCGACGTTCCCTGAAGG 58.891 55.000 0.00 0.00 34.20 3.46
4082 4264 4.342665 CCTGAAGGAGGTATAGGAACAGAC 59.657 50.000 0.00 0.00 37.02 3.51
4086 4268 4.805744 AGGAGGTATAGGAACAGACGAAT 58.194 43.478 0.00 0.00 0.00 3.34
4092 4274 6.817140 AGGTATAGGAACAGACGAATGTTTTC 59.183 38.462 10.48 7.28 43.32 2.29
4093 4275 6.592607 GGTATAGGAACAGACGAATGTTTTCA 59.407 38.462 10.48 1.71 43.32 2.69
4138 4320 1.952990 TGAACGCTTCAGAATTGCCAA 59.047 42.857 0.00 0.00 34.08 4.52
4141 4323 1.267806 ACGCTTCAGAATTGCCAAGTG 59.732 47.619 0.00 0.00 33.45 3.16
4258 4443 4.541085 TGCTGCATGAGAATAATTGTCG 57.459 40.909 0.00 0.00 0.00 4.35
4262 4447 3.242381 TGCATGAGAATAATTGTCGTGCG 60.242 43.478 19.81 0.00 33.07 5.34
4267 4452 6.469139 TGAGAATAATTGTCGTGCGTTTTA 57.531 33.333 0.00 0.00 0.00 1.52
4270 4455 7.532546 TGAGAATAATTGTCGTGCGTTTTAAAG 59.467 33.333 0.00 0.00 0.00 1.85
4274 4459 4.555348 TTGTCGTGCGTTTTAAAGGATT 57.445 36.364 1.30 0.00 0.00 3.01
4302 4487 2.634982 TGCAAACATCGAGAATTGCC 57.365 45.000 21.64 10.02 45.71 4.52
4303 4488 1.885233 TGCAAACATCGAGAATTGCCA 59.115 42.857 21.64 11.78 45.71 4.92
4305 4490 2.523015 CAAACATCGAGAATTGCCAGC 58.477 47.619 0.00 0.00 0.00 4.85
4307 4492 0.254178 ACATCGAGAATTGCCAGCCT 59.746 50.000 0.00 0.00 0.00 4.58
4347 4535 7.100458 GTAAGAATTACCAGGATTTGCATGT 57.900 36.000 0.00 0.00 45.64 3.21
4348 4536 8.220755 GTAAGAATTACCAGGATTTGCATGTA 57.779 34.615 0.00 0.00 45.64 2.29
4349 4537 6.949352 AGAATTACCAGGATTTGCATGTAG 57.051 37.500 0.00 0.00 0.00 2.74
4350 4538 6.426587 AGAATTACCAGGATTTGCATGTAGT 58.573 36.000 0.00 0.00 0.00 2.73
4351 4539 7.573710 AGAATTACCAGGATTTGCATGTAGTA 58.426 34.615 0.00 0.00 0.00 1.82
4352 4540 7.716998 AGAATTACCAGGATTTGCATGTAGTAG 59.283 37.037 0.00 0.00 0.00 2.57
4353 4541 4.844349 ACCAGGATTTGCATGTAGTAGT 57.156 40.909 0.00 0.00 0.00 2.73
4354 4542 5.179452 ACCAGGATTTGCATGTAGTAGTT 57.821 39.130 0.00 0.00 0.00 2.24
4355 4543 4.943705 ACCAGGATTTGCATGTAGTAGTTG 59.056 41.667 0.00 0.00 0.00 3.16
4356 4544 4.336433 CCAGGATTTGCATGTAGTAGTTGG 59.664 45.833 0.00 0.00 0.00 3.77
4357 4545 5.185454 CAGGATTTGCATGTAGTAGTTGGA 58.815 41.667 0.00 0.00 0.00 3.53
4358 4546 5.647658 CAGGATTTGCATGTAGTAGTTGGAA 59.352 40.000 0.00 0.00 0.00 3.53
4359 4547 6.150976 CAGGATTTGCATGTAGTAGTTGGAAA 59.849 38.462 0.00 2.68 35.60 3.13
4360 4548 6.719370 AGGATTTGCATGTAGTAGTTGGAAAA 59.281 34.615 0.00 0.00 34.95 2.29
4361 4549 7.232534 AGGATTTGCATGTAGTAGTTGGAAAAA 59.767 33.333 0.00 0.00 34.95 1.94
4381 4569 3.425577 AAATGCCATGCTACATCAACG 57.574 42.857 0.00 0.00 0.00 4.10
4382 4570 2.330440 ATGCCATGCTACATCAACGA 57.670 45.000 0.00 0.00 0.00 3.85
4383 4571 1.368641 TGCCATGCTACATCAACGAC 58.631 50.000 0.00 0.00 0.00 4.34
4384 4572 1.066215 TGCCATGCTACATCAACGACT 60.066 47.619 0.00 0.00 0.00 4.18
4385 4573 1.328680 GCCATGCTACATCAACGACTG 59.671 52.381 0.00 0.00 0.00 3.51
4386 4574 1.328680 CCATGCTACATCAACGACTGC 59.671 52.381 0.00 0.00 0.00 4.40
4387 4575 1.328680 CATGCTACATCAACGACTGCC 59.671 52.381 0.00 0.00 0.00 4.85
4388 4576 0.320050 TGCTACATCAACGACTGCCA 59.680 50.000 0.00 0.00 0.00 4.92
4389 4577 1.066215 TGCTACATCAACGACTGCCAT 60.066 47.619 0.00 0.00 0.00 4.40
4390 4578 1.594862 GCTACATCAACGACTGCCATC 59.405 52.381 0.00 0.00 0.00 3.51
4391 4579 2.892374 CTACATCAACGACTGCCATCA 58.108 47.619 0.00 0.00 0.00 3.07
4392 4580 1.730501 ACATCAACGACTGCCATCAG 58.269 50.000 0.00 0.00 45.71 2.90
4393 4581 0.376152 CATCAACGACTGCCATCAGC 59.624 55.000 0.00 0.00 44.10 4.26
4394 4582 0.251354 ATCAACGACTGCCATCAGCT 59.749 50.000 0.00 0.00 44.10 4.24
4395 4583 0.390340 TCAACGACTGCCATCAGCTC 60.390 55.000 0.00 0.00 44.10 4.09
4396 4584 0.671472 CAACGACTGCCATCAGCTCA 60.671 55.000 0.00 0.00 44.10 4.26
4397 4585 0.251354 AACGACTGCCATCAGCTCAT 59.749 50.000 0.00 0.00 44.10 2.90
4398 4586 1.114627 ACGACTGCCATCAGCTCATA 58.885 50.000 0.00 0.00 44.10 2.15
4399 4587 1.068281 ACGACTGCCATCAGCTCATAG 59.932 52.381 0.00 0.00 44.10 2.23
4400 4588 1.068281 CGACTGCCATCAGCTCATAGT 59.932 52.381 0.00 0.00 44.10 2.12
4401 4589 2.482664 CGACTGCCATCAGCTCATAGTT 60.483 50.000 0.00 0.00 44.10 2.24
4402 4590 3.129871 GACTGCCATCAGCTCATAGTTC 58.870 50.000 0.00 0.00 44.10 3.01
4403 4591 2.502947 ACTGCCATCAGCTCATAGTTCA 59.497 45.455 0.00 0.00 44.10 3.18
4404 4592 2.871022 CTGCCATCAGCTCATAGTTCAC 59.129 50.000 0.00 0.00 44.23 3.18
4405 4593 2.236893 TGCCATCAGCTCATAGTTCACA 59.763 45.455 0.00 0.00 44.23 3.58
4406 4594 3.118149 TGCCATCAGCTCATAGTTCACAT 60.118 43.478 0.00 0.00 44.23 3.21
4407 4595 3.250280 GCCATCAGCTCATAGTTCACATG 59.750 47.826 0.00 0.00 38.99 3.21
4408 4596 3.813724 CCATCAGCTCATAGTTCACATGG 59.186 47.826 0.00 0.00 0.00 3.66
4409 4597 4.443881 CCATCAGCTCATAGTTCACATGGA 60.444 45.833 0.00 0.00 31.56 3.41
4410 4598 4.397481 TCAGCTCATAGTTCACATGGAG 57.603 45.455 0.00 0.00 0.00 3.86
4411 4599 4.026052 TCAGCTCATAGTTCACATGGAGA 58.974 43.478 0.00 0.00 0.00 3.71
4412 4600 4.099113 TCAGCTCATAGTTCACATGGAGAG 59.901 45.833 0.00 0.00 0.00 3.20
4413 4601 3.387374 AGCTCATAGTTCACATGGAGAGG 59.613 47.826 0.00 0.00 0.00 3.69
4414 4602 3.494048 GCTCATAGTTCACATGGAGAGGG 60.494 52.174 0.00 0.00 0.00 4.30
4415 4603 2.435805 TCATAGTTCACATGGAGAGGGC 59.564 50.000 0.00 0.00 0.00 5.19
4416 4604 0.824109 TAGTTCACATGGAGAGGGCG 59.176 55.000 0.00 0.00 0.00 6.13
4417 4605 1.450312 GTTCACATGGAGAGGGCGG 60.450 63.158 0.00 0.00 0.00 6.13
4418 4606 2.669133 TTCACATGGAGAGGGCGGG 61.669 63.158 0.00 0.00 0.00 6.13
4419 4607 3.083349 CACATGGAGAGGGCGGGA 61.083 66.667 0.00 0.00 0.00 5.14
4420 4608 2.040464 ACATGGAGAGGGCGGGAT 60.040 61.111 0.00 0.00 0.00 3.85
4421 4609 2.143419 ACATGGAGAGGGCGGGATC 61.143 63.158 0.00 0.00 0.00 3.36
4422 4610 2.919856 ATGGAGAGGGCGGGATCG 60.920 66.667 0.00 0.00 39.81 3.69
4423 4611 3.452621 ATGGAGAGGGCGGGATCGA 62.453 63.158 0.00 0.00 39.00 3.59
4424 4612 2.838225 GGAGAGGGCGGGATCGAA 60.838 66.667 0.00 0.00 39.00 3.71
4425 4613 2.417936 GAGAGGGCGGGATCGAAC 59.582 66.667 0.00 0.00 39.00 3.95
4426 4614 3.486252 GAGAGGGCGGGATCGAACG 62.486 68.421 0.00 0.00 39.00 3.95
4427 4615 3.834799 GAGGGCGGGATCGAACGT 61.835 66.667 8.86 0.00 39.00 3.99
4428 4616 4.143333 AGGGCGGGATCGAACGTG 62.143 66.667 8.86 0.00 39.00 4.49
4431 4619 4.814294 GCGGGATCGAACGTGCCT 62.814 66.667 8.86 0.00 39.00 4.75
4432 4620 2.885644 CGGGATCGAACGTGCCTG 60.886 66.667 0.00 0.00 39.00 4.85
4433 4621 2.577059 GGGATCGAACGTGCCTGA 59.423 61.111 0.00 0.00 0.00 3.86
4434 4622 1.519455 GGGATCGAACGTGCCTGAG 60.519 63.158 0.00 0.00 0.00 3.35
4435 4623 1.519455 GGATCGAACGTGCCTGAGG 60.519 63.158 0.00 0.00 0.00 3.86
4436 4624 1.511305 GATCGAACGTGCCTGAGGA 59.489 57.895 0.65 0.00 0.00 3.71
4437 4625 0.103208 GATCGAACGTGCCTGAGGAT 59.897 55.000 0.65 0.00 0.00 3.24
4438 4626 0.103208 ATCGAACGTGCCTGAGGATC 59.897 55.000 0.65 0.00 0.00 3.36
4440 4628 1.078759 CGAACGTGCCTGAGGATCAC 61.079 60.000 0.65 0.10 42.56 3.06
4441 4629 0.247736 GAACGTGCCTGAGGATCACT 59.752 55.000 0.65 0.00 42.56 3.41
4442 4630 0.687354 AACGTGCCTGAGGATCACTT 59.313 50.000 0.65 0.00 42.56 3.16
4443 4631 0.247736 ACGTGCCTGAGGATCACTTC 59.752 55.000 0.65 0.00 42.56 3.01
4444 4632 0.534412 CGTGCCTGAGGATCACTTCT 59.466 55.000 0.65 0.00 42.56 2.85
4445 4633 1.751351 CGTGCCTGAGGATCACTTCTA 59.249 52.381 0.65 0.00 42.56 2.10
4446 4634 2.480416 CGTGCCTGAGGATCACTTCTAC 60.480 54.545 0.65 0.00 42.56 2.59
4447 4635 2.763448 GTGCCTGAGGATCACTTCTACT 59.237 50.000 0.65 0.00 42.56 2.57
4448 4636 3.027412 TGCCTGAGGATCACTTCTACTC 58.973 50.000 0.65 0.00 42.56 2.59
4449 4637 2.364002 GCCTGAGGATCACTTCTACTCC 59.636 54.545 0.65 0.00 42.56 3.85
4450 4638 2.962421 CCTGAGGATCACTTCTACTCCC 59.038 54.545 0.00 0.00 42.56 4.30
4451 4639 3.373658 CCTGAGGATCACTTCTACTCCCT 60.374 52.174 0.00 0.00 42.56 4.20
4452 4640 3.888930 CTGAGGATCACTTCTACTCCCTC 59.111 52.174 0.00 0.00 42.56 4.30
4453 4641 3.227614 GAGGATCACTTCTACTCCCTCC 58.772 54.545 0.00 0.00 34.25 4.30
4454 4642 2.587777 AGGATCACTTCTACTCCCTCCA 59.412 50.000 0.00 0.00 0.00 3.86
4455 4643 3.208692 AGGATCACTTCTACTCCCTCCAT 59.791 47.826 0.00 0.00 0.00 3.41
4456 4644 3.970640 GGATCACTTCTACTCCCTCCATT 59.029 47.826 0.00 0.00 0.00 3.16
4457 4645 4.039852 GGATCACTTCTACTCCCTCCATTC 59.960 50.000 0.00 0.00 0.00 2.67
4458 4646 3.375699 TCACTTCTACTCCCTCCATTCC 58.624 50.000 0.00 0.00 0.00 3.01
4459 4647 3.012959 TCACTTCTACTCCCTCCATTCCT 59.987 47.826 0.00 0.00 0.00 3.36
4460 4648 4.232122 TCACTTCTACTCCCTCCATTCCTA 59.768 45.833 0.00 0.00 0.00 2.94
4461 4649 4.962995 CACTTCTACTCCCTCCATTCCTAA 59.037 45.833 0.00 0.00 0.00 2.69
4462 4650 5.604650 CACTTCTACTCCCTCCATTCCTAAT 59.395 44.000 0.00 0.00 0.00 1.73
4463 4651 6.100424 CACTTCTACTCCCTCCATTCCTAATT 59.900 42.308 0.00 0.00 0.00 1.40
4464 4652 6.678857 ACTTCTACTCCCTCCATTCCTAATTT 59.321 38.462 0.00 0.00 0.00 1.82
4465 4653 7.184753 ACTTCTACTCCCTCCATTCCTAATTTT 59.815 37.037 0.00 0.00 0.00 1.82
4466 4654 7.525158 TCTACTCCCTCCATTCCTAATTTTT 57.475 36.000 0.00 0.00 0.00 1.94
4493 4681 8.684386 AGAGATTTCACTATAGAGACATTCGA 57.316 34.615 6.78 0.00 0.00 3.71
4494 4682 9.126151 AGAGATTTCACTATAGAGACATTCGAA 57.874 33.333 6.78 0.00 0.00 3.71
4495 4683 9.906660 GAGATTTCACTATAGAGACATTCGAAT 57.093 33.333 4.39 4.39 0.00 3.34
4496 4684 9.689976 AGATTTCACTATAGAGACATTCGAATG 57.310 33.333 31.51 31.51 42.10 2.67
4528 4716 9.030452 AGACATCTTTCAGAGTATAAGTTCACT 57.970 33.333 0.00 0.00 0.00 3.41
4529 4717 9.296400 GACATCTTTCAGAGTATAAGTTCACTC 57.704 37.037 8.76 8.76 41.25 3.51
4530 4718 8.807118 ACATCTTTCAGAGTATAAGTTCACTCA 58.193 33.333 16.02 0.00 42.99 3.41
4531 4719 9.814899 CATCTTTCAGAGTATAAGTTCACTCAT 57.185 33.333 16.02 2.08 42.99 2.90
4536 4724 8.256611 TCAGAGTATAAGTTCACTCATTTTGC 57.743 34.615 16.02 0.00 42.99 3.68
4537 4725 8.097038 TCAGAGTATAAGTTCACTCATTTTGCT 58.903 33.333 16.02 0.00 42.99 3.91
4538 4726 8.386606 CAGAGTATAAGTTCACTCATTTTGCTC 58.613 37.037 16.02 0.00 42.99 4.26
4539 4727 7.550906 AGAGTATAAGTTCACTCATTTTGCTCC 59.449 37.037 16.02 0.00 42.99 4.70
4540 4728 3.904136 AAGTTCACTCATTTTGCTCCG 57.096 42.857 0.00 0.00 0.00 4.63
4541 4729 2.851195 AGTTCACTCATTTTGCTCCGT 58.149 42.857 0.00 0.00 0.00 4.69
4542 4730 4.002906 AGTTCACTCATTTTGCTCCGTA 57.997 40.909 0.00 0.00 0.00 4.02
4543 4731 4.579869 AGTTCACTCATTTTGCTCCGTAT 58.420 39.130 0.00 0.00 0.00 3.06
4544 4732 4.393062 AGTTCACTCATTTTGCTCCGTATG 59.607 41.667 0.00 0.00 0.00 2.39
4545 4733 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4546 4734 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4547 4735 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4548 4736 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4549 4737 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4550 4738 5.105310 ACTCATTTTGCTCCGTATGTAGTCT 60.105 40.000 0.00 0.00 0.00 3.24
4551 4739 6.096423 ACTCATTTTGCTCCGTATGTAGTCTA 59.904 38.462 0.00 0.00 0.00 2.59
4552 4740 7.050970 TCATTTTGCTCCGTATGTAGTCTAT 57.949 36.000 0.00 0.00 0.00 1.98
4553 4741 8.173542 TCATTTTGCTCCGTATGTAGTCTATA 57.826 34.615 0.00 0.00 0.00 1.31
4554 4742 8.635328 TCATTTTGCTCCGTATGTAGTCTATAA 58.365 33.333 0.00 0.00 0.00 0.98
4555 4743 9.256477 CATTTTGCTCCGTATGTAGTCTATAAA 57.744 33.333 0.00 0.00 0.00 1.40
4556 4744 8.867112 TTTTGCTCCGTATGTAGTCTATAAAG 57.133 34.615 0.00 0.00 0.00 1.85
4557 4745 7.812690 TTGCTCCGTATGTAGTCTATAAAGA 57.187 36.000 0.00 0.00 0.00 2.52
4558 4746 7.812690 TGCTCCGTATGTAGTCTATAAAGAA 57.187 36.000 0.00 0.00 32.16 2.52
4559 4747 8.229253 TGCTCCGTATGTAGTCTATAAAGAAA 57.771 34.615 0.00 0.00 32.16 2.52
4560 4748 8.857098 TGCTCCGTATGTAGTCTATAAAGAAAT 58.143 33.333 0.00 0.00 32.16 2.17
4561 4749 9.344309 GCTCCGTATGTAGTCTATAAAGAAATC 57.656 37.037 0.00 0.00 32.16 2.17
4590 4778 8.959705 AAAAGGACTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
4591 4779 6.667558 AGGACTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
4592 4780 6.141790 AGGACTTATATTTAGGAACGGAGGT 58.858 40.000 0.00 0.00 0.00 3.85
4593 4781 6.267242 AGGACTTATATTTAGGAACGGAGGTC 59.733 42.308 0.00 0.00 0.00 3.85
4594 4782 6.416631 ACTTATATTTAGGAACGGAGGTCC 57.583 41.667 0.00 0.00 0.00 4.46
4595 4783 6.141790 ACTTATATTTAGGAACGGAGGTCCT 58.858 40.000 11.70 11.70 37.64 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.062639 CAGGTTGTGTTGAGCGATGTATC 59.937 47.826 0.00 0.00 0.00 2.24
1 2 3.002791 CAGGTTGTGTTGAGCGATGTAT 58.997 45.455 0.00 0.00 0.00 2.29
8 9 1.103398 AGCCACAGGTTGTGTTGAGC 61.103 55.000 8.25 4.66 46.45 4.26
9 10 2.254546 TAGCCACAGGTTGTGTTGAG 57.745 50.000 8.25 0.00 46.45 3.02
104 122 6.542821 TCCTTCCTATGTGACTGAAAATTGT 58.457 36.000 0.00 0.00 0.00 2.71
105 123 7.636150 ATCCTTCCTATGTGACTGAAAATTG 57.364 36.000 0.00 0.00 0.00 2.32
106 124 7.890127 TGAATCCTTCCTATGTGACTGAAAATT 59.110 33.333 0.00 0.00 0.00 1.82
107 125 7.405292 TGAATCCTTCCTATGTGACTGAAAAT 58.595 34.615 0.00 0.00 0.00 1.82
108 126 6.778821 TGAATCCTTCCTATGTGACTGAAAA 58.221 36.000 0.00 0.00 0.00 2.29
109 127 6.373005 TGAATCCTTCCTATGTGACTGAAA 57.627 37.500 0.00 0.00 0.00 2.69
110 128 6.373005 TTGAATCCTTCCTATGTGACTGAA 57.627 37.500 0.00 0.00 0.00 3.02
111 129 6.566079 ATTGAATCCTTCCTATGTGACTGA 57.434 37.500 0.00 0.00 0.00 3.41
189 219 5.068198 CGGGCAAGGTGATTTACTACTACTA 59.932 44.000 0.00 0.00 0.00 1.82
748 778 3.998672 GACACCGACCGAGCCCAA 61.999 66.667 0.00 0.00 0.00 4.12
842 872 4.345288 TCTGGTTCGACGTGTATTAATCG 58.655 43.478 0.00 0.00 35.91 3.34
856 886 7.381678 GCCTATACTAGTTTACATTCTGGTTCG 59.618 40.741 0.00 0.00 0.00 3.95
895 926 1.740025 GATTTTCCCGTGAGCAGAAGG 59.260 52.381 0.00 0.00 0.00 3.46
1044 1085 2.203195 AACAGCTTGTGCGCCAGA 60.203 55.556 4.18 0.00 45.42 3.86
1195 1236 1.123928 GGATCGAATCAGACCACCCT 58.876 55.000 0.00 0.00 0.00 4.34
1199 1240 1.269778 GCATCGGATCGAATCAGACCA 60.270 52.381 0.00 0.00 39.99 4.02
1368 1409 6.382869 AATTCGAGCATGAAAAAGGATAGG 57.617 37.500 0.00 0.00 0.00 2.57
1372 1413 5.335897 CCTGAAATTCGAGCATGAAAAAGGA 60.336 40.000 0.00 0.00 0.00 3.36
1382 1424 3.334583 AAGTAGCCTGAAATTCGAGCA 57.665 42.857 9.24 0.00 0.00 4.26
1485 1527 3.553508 GCTCGTAACACTGTGGGTTTCTA 60.554 47.826 13.09 0.00 0.00 2.10
1498 1540 3.671716 TCACAGTCTAGAGCTCGTAACA 58.328 45.455 8.37 0.00 0.00 2.41
1518 1564 7.647907 AGAACAAATGAAGAATTGCACAATC 57.352 32.000 0.00 0.00 0.00 2.67
1525 1571 7.063074 GGAGCATCAAGAACAAATGAAGAATTG 59.937 37.037 0.00 0.00 36.25 2.32
1697 1822 9.988815 GAGCTTAGATGACATCCTTAGAAAATA 57.011 33.333 11.92 0.00 0.00 1.40
1698 1823 7.936301 GGAGCTTAGATGACATCCTTAGAAAAT 59.064 37.037 11.92 0.00 0.00 1.82
1699 1824 7.275920 GGAGCTTAGATGACATCCTTAGAAAA 58.724 38.462 11.92 0.00 0.00 2.29
1700 1825 6.183361 GGGAGCTTAGATGACATCCTTAGAAA 60.183 42.308 11.92 0.00 0.00 2.52
1701 1826 5.305644 GGGAGCTTAGATGACATCCTTAGAA 59.694 44.000 11.92 0.00 0.00 2.10
1702 1827 4.835615 GGGAGCTTAGATGACATCCTTAGA 59.164 45.833 11.92 0.00 0.00 2.10
1703 1828 4.590647 TGGGAGCTTAGATGACATCCTTAG 59.409 45.833 11.92 8.00 0.00 2.18
1704 1829 4.345257 GTGGGAGCTTAGATGACATCCTTA 59.655 45.833 11.92 0.00 0.00 2.69
1705 1830 3.135530 GTGGGAGCTTAGATGACATCCTT 59.864 47.826 11.92 0.00 0.00 3.36
1706 1831 2.703007 GTGGGAGCTTAGATGACATCCT 59.297 50.000 11.92 1.84 0.00 3.24
1707 1832 2.435805 TGTGGGAGCTTAGATGACATCC 59.564 50.000 11.92 0.00 0.00 3.51
1708 1833 3.827008 TGTGGGAGCTTAGATGACATC 57.173 47.619 7.39 7.39 0.00 3.06
1709 1834 4.574674 TTTGTGGGAGCTTAGATGACAT 57.425 40.909 0.00 0.00 0.00 3.06
1710 1835 4.574674 ATTTGTGGGAGCTTAGATGACA 57.425 40.909 0.00 0.00 0.00 3.58
1711 1836 5.529060 CCTTATTTGTGGGAGCTTAGATGAC 59.471 44.000 0.00 0.00 0.00 3.06
1712 1837 5.684704 CCTTATTTGTGGGAGCTTAGATGA 58.315 41.667 0.00 0.00 0.00 2.92
1713 1838 4.276926 GCCTTATTTGTGGGAGCTTAGATG 59.723 45.833 0.00 0.00 0.00 2.90
1714 1839 4.079787 TGCCTTATTTGTGGGAGCTTAGAT 60.080 41.667 0.00 0.00 0.00 1.98
1715 1840 3.265737 TGCCTTATTTGTGGGAGCTTAGA 59.734 43.478 0.00 0.00 0.00 2.10
1716 1841 3.620488 TGCCTTATTTGTGGGAGCTTAG 58.380 45.455 0.00 0.00 0.00 2.18
1717 1842 3.620488 CTGCCTTATTTGTGGGAGCTTA 58.380 45.455 0.00 0.00 35.14 3.09
1718 1843 2.450476 CTGCCTTATTTGTGGGAGCTT 58.550 47.619 0.00 0.00 35.14 3.74
1719 1844 2.134789 CTGCCTTATTTGTGGGAGCT 57.865 50.000 0.00 0.00 35.14 4.09
1721 1846 1.838112 TGCTGCCTTATTTGTGGGAG 58.162 50.000 0.00 0.00 43.41 4.30
1722 1847 1.892474 GTTGCTGCCTTATTTGTGGGA 59.108 47.619 0.00 0.00 0.00 4.37
1723 1848 1.617850 TGTTGCTGCCTTATTTGTGGG 59.382 47.619 0.00 0.00 0.00 4.61
1724 1849 3.319755 CTTGTTGCTGCCTTATTTGTGG 58.680 45.455 0.00 0.00 0.00 4.17
1725 1850 3.005684 TCCTTGTTGCTGCCTTATTTGTG 59.994 43.478 0.00 0.00 0.00 3.33
1726 1851 3.230134 TCCTTGTTGCTGCCTTATTTGT 58.770 40.909 0.00 0.00 0.00 2.83
1727 1852 3.940209 TCCTTGTTGCTGCCTTATTTG 57.060 42.857 0.00 0.00 0.00 2.32
1728 1853 3.640967 TGTTCCTTGTTGCTGCCTTATTT 59.359 39.130 0.00 0.00 0.00 1.40
1729 1854 3.230134 TGTTCCTTGTTGCTGCCTTATT 58.770 40.909 0.00 0.00 0.00 1.40
1730 1855 2.875296 TGTTCCTTGTTGCTGCCTTAT 58.125 42.857 0.00 0.00 0.00 1.73
1731 1856 2.356665 TGTTCCTTGTTGCTGCCTTA 57.643 45.000 0.00 0.00 0.00 2.69
1732 1857 1.484038 TTGTTCCTTGTTGCTGCCTT 58.516 45.000 0.00 0.00 0.00 4.35
1733 1858 1.484038 TTTGTTCCTTGTTGCTGCCT 58.516 45.000 0.00 0.00 0.00 4.75
1734 1859 2.307934 TTTTGTTCCTTGTTGCTGCC 57.692 45.000 0.00 0.00 0.00 4.85
1783 1908 3.127548 GCCTGATGTCCACTATGTTTGTG 59.872 47.826 0.00 0.00 35.39 3.33
1784 1909 3.009473 AGCCTGATGTCCACTATGTTTGT 59.991 43.478 0.00 0.00 0.00 2.83
1785 1910 3.614092 AGCCTGATGTCCACTATGTTTG 58.386 45.455 0.00 0.00 0.00 2.93
1786 1911 5.104360 ACATAGCCTGATGTCCACTATGTTT 60.104 40.000 7.88 0.00 46.94 2.83
1787 1912 4.410228 ACATAGCCTGATGTCCACTATGTT 59.590 41.667 7.88 0.00 46.94 2.71
1788 1913 3.969976 ACATAGCCTGATGTCCACTATGT 59.030 43.478 7.88 7.88 45.22 2.29
1789 1914 4.564041 GACATAGCCTGATGTCCACTATG 58.436 47.826 11.23 0.00 46.74 2.23
1790 1915 4.881019 GACATAGCCTGATGTCCACTAT 57.119 45.455 11.23 0.00 46.74 2.12
1797 1922 5.143369 TCTAGATGTGACATAGCCTGATGT 58.857 41.667 0.00 0.00 42.82 3.06
1798 1923 5.718724 TCTAGATGTGACATAGCCTGATG 57.281 43.478 0.00 0.00 0.00 3.07
1799 1924 6.283544 CATCTAGATGTGACATAGCCTGAT 57.716 41.667 22.42 0.00 34.23 2.90
1800 1925 5.718724 CATCTAGATGTGACATAGCCTGA 57.281 43.478 22.42 0.00 34.23 3.86
1813 1938 5.240623 GGTCTGTCTAGGACACATCTAGATG 59.759 48.000 27.63 27.63 43.25 2.90
1814 1939 5.381757 GGTCTGTCTAGGACACATCTAGAT 58.618 45.833 0.00 0.00 43.25 1.98
1815 1940 4.385421 GGGTCTGTCTAGGACACATCTAGA 60.385 50.000 0.00 0.00 37.67 2.43
1816 1941 3.886505 GGGTCTGTCTAGGACACATCTAG 59.113 52.174 0.00 0.00 37.67 2.43
1817 1942 3.528078 AGGGTCTGTCTAGGACACATCTA 59.472 47.826 3.18 0.00 39.36 1.98
1818 1943 2.313342 AGGGTCTGTCTAGGACACATCT 59.687 50.000 3.18 0.00 39.36 2.90
1819 1944 2.428890 CAGGGTCTGTCTAGGACACATC 59.571 54.545 3.18 0.00 39.36 3.06
1820 1945 2.043115 TCAGGGTCTGTCTAGGACACAT 59.957 50.000 3.18 0.00 39.36 3.21
1821 1946 1.427753 TCAGGGTCTGTCTAGGACACA 59.572 52.381 3.18 0.00 39.36 3.72
1822 1947 2.217510 TCAGGGTCTGTCTAGGACAC 57.782 55.000 0.00 0.00 37.67 3.67
1823 1948 3.099905 CAATCAGGGTCTGTCTAGGACA 58.900 50.000 0.43 0.43 40.50 4.02
1824 1949 3.366396 TCAATCAGGGTCTGTCTAGGAC 58.634 50.000 0.00 0.00 32.61 3.85
1825 1950 3.757947 TCAATCAGGGTCTGTCTAGGA 57.242 47.619 0.00 0.00 32.61 2.94
1826 1951 5.777223 TGATATCAATCAGGGTCTGTCTAGG 59.223 44.000 1.98 0.00 37.20 3.02
1827 1952 6.907853 TGATATCAATCAGGGTCTGTCTAG 57.092 41.667 1.98 0.00 37.20 2.43
1828 1953 7.012607 TCATGATATCAATCAGGGTCTGTCTA 58.987 38.462 9.99 0.00 45.17 2.59
1829 1954 5.842874 TCATGATATCAATCAGGGTCTGTCT 59.157 40.000 9.99 0.00 45.17 3.41
1830 1955 6.014755 TCTCATGATATCAATCAGGGTCTGTC 60.015 42.308 9.99 0.00 45.17 3.51
1831 1956 5.842874 TCTCATGATATCAATCAGGGTCTGT 59.157 40.000 9.99 0.00 45.17 3.41
1832 1957 6.356186 TCTCATGATATCAATCAGGGTCTG 57.644 41.667 9.99 0.12 45.17 3.51
1833 1958 8.706521 CATATCTCATGATATCAATCAGGGTCT 58.293 37.037 9.99 0.00 45.17 3.85
1834 1959 8.702819 TCATATCTCATGATATCAATCAGGGTC 58.297 37.037 9.99 0.00 45.17 4.46
1835 1960 8.619683 TCATATCTCATGATATCAATCAGGGT 57.380 34.615 9.99 0.00 45.17 4.34
1836 1961 9.549078 CTTCATATCTCATGATATCAATCAGGG 57.451 37.037 9.99 0.64 45.17 4.45
1837 1962 9.549078 CCTTCATATCTCATGATATCAATCAGG 57.451 37.037 9.99 2.11 45.17 3.86
1838 1963 9.549078 CCCTTCATATCTCATGATATCAATCAG 57.451 37.037 9.99 6.09 45.17 2.90
1839 1964 7.991460 GCCCTTCATATCTCATGATATCAATCA 59.009 37.037 9.99 0.00 46.01 2.57
1840 1965 7.991460 TGCCCTTCATATCTCATGATATCAATC 59.009 37.037 9.99 0.00 42.26 2.67
1841 1966 7.868974 TGCCCTTCATATCTCATGATATCAAT 58.131 34.615 9.99 1.07 42.26 2.57
1842 1967 7.261688 TGCCCTTCATATCTCATGATATCAA 57.738 36.000 9.99 0.00 42.26 2.57
1843 1968 6.879367 TGCCCTTCATATCTCATGATATCA 57.121 37.500 8.10 8.10 42.26 2.15
1844 1969 8.649591 AGTATGCCCTTCATATCTCATGATATC 58.350 37.037 0.00 0.00 42.26 1.63
1845 1970 8.564364 AGTATGCCCTTCATATCTCATGATAT 57.436 34.615 0.00 0.00 44.27 1.63
1846 1971 7.984859 AGTATGCCCTTCATATCTCATGATA 57.015 36.000 0.00 0.00 39.63 2.15
1847 1972 6.887886 AGTATGCCCTTCATATCTCATGAT 57.112 37.500 0.00 0.00 39.63 2.45
1848 1973 7.797121 TTAGTATGCCCTTCATATCTCATGA 57.203 36.000 0.00 0.00 39.63 3.07
1849 1974 8.853077 TTTTAGTATGCCCTTCATATCTCATG 57.147 34.615 0.00 0.00 39.63 3.07
1865 1990 7.826690 ACCTTAAACCAGCACATTTTAGTATG 58.173 34.615 0.00 0.00 0.00 2.39
1881 2006 5.182570 GGTTGTCCATCAGTAACCTTAAACC 59.817 44.000 0.00 0.00 39.51 3.27
1958 2083 5.197451 TGGAGACCAGTAATTTGTTTGTGT 58.803 37.500 0.00 0.00 0.00 3.72
2036 2179 8.050778 AGTTCAGAGTCTAGATAACAAGAGTG 57.949 38.462 0.00 0.00 0.00 3.51
2037 2180 8.519526 CAAGTTCAGAGTCTAGATAACAAGAGT 58.480 37.037 0.00 0.00 0.00 3.24
2063 2206 5.383130 GGAAAAAGAAGCGATACACTTCAC 58.617 41.667 6.31 0.00 44.87 3.18
2074 2217 2.030805 CAGAAGGTGGGAAAAAGAAGCG 60.031 50.000 0.00 0.00 0.00 4.68
2088 2231 4.699257 GCAGATTCAGATGAAACAGAAGGT 59.301 41.667 0.00 0.00 37.61 3.50
2106 2249 6.996509 AGAACAAAACCAACATAATGCAGAT 58.003 32.000 0.00 0.00 0.00 2.90
2108 2251 6.073657 CCAAGAACAAAACCAACATAATGCAG 60.074 38.462 0.00 0.00 0.00 4.41
2109 2252 5.757320 CCAAGAACAAAACCAACATAATGCA 59.243 36.000 0.00 0.00 0.00 3.96
2110 2253 5.334028 GCCAAGAACAAAACCAACATAATGC 60.334 40.000 0.00 0.00 0.00 3.56
2116 2259 3.513515 AGAAGCCAAGAACAAAACCAACA 59.486 39.130 0.00 0.00 0.00 3.33
2121 2264 4.036852 AGCAGTAGAAGCCAAGAACAAAAC 59.963 41.667 0.00 0.00 0.00 2.43
2122 2265 4.207165 AGCAGTAGAAGCCAAGAACAAAA 58.793 39.130 0.00 0.00 0.00 2.44
2125 2268 3.492102 AAGCAGTAGAAGCCAAGAACA 57.508 42.857 0.00 0.00 0.00 3.18
2133 2276 9.050601 AGTTGAATGATATTAAGCAGTAGAAGC 57.949 33.333 0.00 0.00 0.00 3.86
2153 2296 7.331934 GCGATCCTTTATGCATAGATAGTTGAA 59.668 37.037 6.50 0.00 0.00 2.69
2154 2297 6.813649 GCGATCCTTTATGCATAGATAGTTGA 59.186 38.462 6.50 1.50 0.00 3.18
2155 2298 6.237675 CGCGATCCTTTATGCATAGATAGTTG 60.238 42.308 0.00 0.83 0.00 3.16
2156 2299 5.807520 CGCGATCCTTTATGCATAGATAGTT 59.192 40.000 0.00 0.00 0.00 2.24
2157 2300 5.344066 CGCGATCCTTTATGCATAGATAGT 58.656 41.667 0.00 0.00 0.00 2.12
2266 2409 9.416794 GTGGAAGACATTAGATATGTAGACATG 57.583 37.037 5.39 0.00 37.15 3.21
2271 2414 6.863645 CACGGTGGAAGACATTAGATATGTAG 59.136 42.308 0.00 0.00 31.52 2.74
2289 2443 1.585297 ACGAAAACCTAACACGGTGG 58.415 50.000 13.48 0.00 37.36 4.61
2577 2735 2.935201 CAAGCTTCGATCAGGAAAGGAG 59.065 50.000 0.00 0.00 0.00 3.69
2668 2826 6.993786 AGTAGCCTTCTTGAAATTTCTAGC 57.006 37.500 20.60 12.32 31.48 3.42
2751 2909 5.929992 TGTAAGGACCGTGTAAAAGATGAAG 59.070 40.000 0.00 0.00 0.00 3.02
2802 2960 7.660208 AGATGAATACGTACCTTTTGTTTCAGT 59.340 33.333 0.00 0.00 0.00 3.41
2843 3001 5.587289 TCCACATTCAAGTTAAACAAGCAC 58.413 37.500 0.00 0.00 0.00 4.40
3103 3267 7.370383 ACAAACATGAACCAGATATGACAAAC 58.630 34.615 0.00 0.00 0.00 2.93
3107 3271 8.081633 TGAAAACAAACATGAACCAGATATGAC 58.918 33.333 0.00 0.00 0.00 3.06
3116 3280 3.803778 CCAGCTGAAAACAAACATGAACC 59.196 43.478 17.39 0.00 0.00 3.62
3119 3283 2.224018 GGCCAGCTGAAAACAAACATGA 60.224 45.455 17.39 0.00 0.00 3.07
3376 3540 9.448438 GGTTAGCCACATCAATTATATCATACA 57.552 33.333 0.00 0.00 34.09 2.29
3377 3541 9.672673 AGGTTAGCCACATCAATTATATCATAC 57.327 33.333 0.00 0.00 37.19 2.39
3379 3543 9.592196 AAAGGTTAGCCACATCAATTATATCAT 57.408 29.630 0.00 0.00 37.19 2.45
3380 3544 8.995027 AAAGGTTAGCCACATCAATTATATCA 57.005 30.769 0.00 0.00 37.19 2.15
3430 3595 1.226773 CCCAGCAGCAATAAAGCGC 60.227 57.895 0.00 0.00 40.15 5.92
3640 3810 5.307196 AGTCTTGTAAGGGAAGCTTGAGTAA 59.693 40.000 2.10 0.00 0.00 2.24
3657 3827 1.683385 GGAGCCAAAGCAAAGTCTTGT 59.317 47.619 0.00 0.00 43.56 3.16
3741 3912 9.533253 GTCAAATCCTCAGATTGAAAAGAAAAA 57.467 29.630 0.00 0.00 42.03 1.94
3746 3917 7.655490 ACAAGTCAAATCCTCAGATTGAAAAG 58.345 34.615 0.00 0.00 42.03 2.27
3774 3949 5.329191 TTCCCTCGACCCATATAGTTAGA 57.671 43.478 0.00 0.00 0.00 2.10
3787 3962 0.036388 TGGTCTGCAATTCCCTCGAC 60.036 55.000 0.00 0.00 0.00 4.20
3860 4035 5.310451 AGAAAGGTAAAACGCTGGTCATAA 58.690 37.500 0.00 0.00 0.00 1.90
3862 4037 3.751518 AGAAAGGTAAAACGCTGGTCAT 58.248 40.909 0.00 0.00 0.00 3.06
3966 4147 1.160137 GCAATCTTGCGTTCCTCACT 58.840 50.000 0.00 0.00 45.11 3.41
3990 4171 5.198602 AGAGGAATGCCAAATAGAAACCT 57.801 39.130 0.00 0.00 36.29 3.50
3999 4180 5.105228 GGAATCATGAAAGAGGAATGCCAAA 60.105 40.000 0.00 0.00 36.29 3.28
4004 4185 5.692928 AGAGGGAATCATGAAAGAGGAATG 58.307 41.667 0.00 0.00 0.00 2.67
4023 4205 2.584835 TTGGAATGGGTTGTGAGAGG 57.415 50.000 0.00 0.00 0.00 3.69
4045 4227 2.889045 CCTTCAGGGAACGTCGGATATA 59.111 50.000 0.00 0.00 37.23 0.86
4051 4233 1.215647 CCTCCTTCAGGGAACGTCG 59.784 63.158 0.00 0.00 44.58 5.12
4066 4248 5.517322 ACATTCGTCTGTTCCTATACCTC 57.483 43.478 0.00 0.00 0.00 3.85
4073 4255 6.002062 GAATGAAAACATTCGTCTGTTCCT 57.998 37.500 7.10 0.00 38.38 3.36
4106 4288 4.992688 TGAAGCGTTCACTGAAATGTTTT 58.007 34.783 0.00 0.00 34.08 2.43
4108 4290 3.876914 TCTGAAGCGTTCACTGAAATGTT 59.123 39.130 0.00 0.00 35.46 2.71
4110 4292 4.472691 TTCTGAAGCGTTCACTGAAATG 57.527 40.909 0.00 0.00 35.46 2.32
4111 4293 5.455392 CAATTCTGAAGCGTTCACTGAAAT 58.545 37.500 0.00 0.00 35.46 2.17
4112 4294 4.789481 GCAATTCTGAAGCGTTCACTGAAA 60.789 41.667 0.00 0.00 35.46 2.69
4138 4320 6.656270 TGCATGATAAGTTCATCAGTTTCACT 59.344 34.615 0.00 0.00 43.40 3.41
4141 4323 5.970023 GCTGCATGATAAGTTCATCAGTTTC 59.030 40.000 0.00 0.00 43.40 2.78
4146 4328 4.773013 TCAGCTGCATGATAAGTTCATCA 58.227 39.130 9.47 0.00 43.40 3.07
4177 4359 7.540745 GGCAATTTTTATGTAGAACGTGACAAT 59.459 33.333 0.00 0.00 0.00 2.71
4184 4366 5.317733 TGGGGCAATTTTTATGTAGAACG 57.682 39.130 0.00 0.00 0.00 3.95
4191 4373 5.002516 ACACAACATGGGGCAATTTTTATG 58.997 37.500 0.00 0.00 0.00 1.90
4192 4374 5.240013 ACACAACATGGGGCAATTTTTAT 57.760 34.783 0.00 0.00 0.00 1.40
4258 4443 5.918011 TCATGACAAATCCTTTAAAACGCAC 59.082 36.000 0.00 0.00 0.00 5.34
4262 4447 7.887996 TGCATCATGACAAATCCTTTAAAAC 57.112 32.000 0.00 0.00 0.00 2.43
4267 4452 5.856156 TGTTTGCATCATGACAAATCCTTT 58.144 33.333 12.92 0.00 38.01 3.11
4324 4512 8.052748 ACTACATGCAAATCCTGGTAATTCTTA 58.947 33.333 0.00 0.00 0.00 2.10
4336 4524 6.509418 TTTCCAACTACTACATGCAAATCC 57.491 37.500 0.00 0.00 0.00 3.01
4359 4547 4.082300 TCGTTGATGTAGCATGGCATTTTT 60.082 37.500 0.00 0.00 0.00 1.94
4360 4548 3.443329 TCGTTGATGTAGCATGGCATTTT 59.557 39.130 0.00 0.00 0.00 1.82
4361 4549 3.016031 TCGTTGATGTAGCATGGCATTT 58.984 40.909 0.00 0.00 0.00 2.32
4362 4550 2.355756 GTCGTTGATGTAGCATGGCATT 59.644 45.455 0.00 0.00 0.00 3.56
4363 4551 1.942657 GTCGTTGATGTAGCATGGCAT 59.057 47.619 0.00 0.00 0.00 4.40
4364 4552 1.066215 AGTCGTTGATGTAGCATGGCA 60.066 47.619 0.00 0.00 0.00 4.92
4365 4553 1.328680 CAGTCGTTGATGTAGCATGGC 59.671 52.381 0.00 0.00 0.00 4.40
4366 4554 1.328680 GCAGTCGTTGATGTAGCATGG 59.671 52.381 0.00 0.00 0.00 3.66
4367 4555 1.328680 GGCAGTCGTTGATGTAGCATG 59.671 52.381 0.00 0.00 0.00 4.06
4368 4556 1.066215 TGGCAGTCGTTGATGTAGCAT 60.066 47.619 0.00 0.00 0.00 3.79
4369 4557 0.320050 TGGCAGTCGTTGATGTAGCA 59.680 50.000 0.00 0.00 0.00 3.49
4370 4558 1.594862 GATGGCAGTCGTTGATGTAGC 59.405 52.381 0.00 0.00 0.00 3.58
4371 4559 2.862536 CTGATGGCAGTCGTTGATGTAG 59.137 50.000 0.00 0.00 37.37 2.74
4372 4560 2.892374 CTGATGGCAGTCGTTGATGTA 58.108 47.619 0.00 0.00 37.37 2.29
4373 4561 1.730501 CTGATGGCAGTCGTTGATGT 58.269 50.000 0.00 0.00 37.37 3.06
4374 4562 0.376152 GCTGATGGCAGTCGTTGATG 59.624 55.000 0.00 0.00 44.17 3.07
4375 4563 0.251354 AGCTGATGGCAGTCGTTGAT 59.749 50.000 0.00 0.00 44.17 2.57
4376 4564 0.390340 GAGCTGATGGCAGTCGTTGA 60.390 55.000 0.00 0.00 44.17 3.18
4377 4565 0.671472 TGAGCTGATGGCAGTCGTTG 60.671 55.000 0.00 0.00 44.17 4.10
4378 4566 0.251354 ATGAGCTGATGGCAGTCGTT 59.749 50.000 0.00 0.00 44.17 3.85
4379 4567 1.068281 CTATGAGCTGATGGCAGTCGT 59.932 52.381 0.00 0.00 44.17 4.34
4380 4568 1.068281 ACTATGAGCTGATGGCAGTCG 59.932 52.381 0.00 0.00 44.17 4.18
4381 4569 2.906691 ACTATGAGCTGATGGCAGTC 57.093 50.000 0.00 0.00 44.17 3.51
4382 4570 2.502947 TGAACTATGAGCTGATGGCAGT 59.497 45.455 0.00 0.00 44.17 4.40
4383 4571 2.871022 GTGAACTATGAGCTGATGGCAG 59.129 50.000 0.00 0.00 44.79 4.85
4384 4572 2.236893 TGTGAACTATGAGCTGATGGCA 59.763 45.455 0.00 0.00 44.79 4.92
4385 4573 2.910199 TGTGAACTATGAGCTGATGGC 58.090 47.619 0.00 0.00 42.19 4.40
4386 4574 3.813724 CCATGTGAACTATGAGCTGATGG 59.186 47.826 0.00 0.00 0.00 3.51
4387 4575 4.700700 TCCATGTGAACTATGAGCTGATG 58.299 43.478 0.00 0.00 0.00 3.07
4388 4576 4.652881 TCTCCATGTGAACTATGAGCTGAT 59.347 41.667 0.00 0.00 0.00 2.90
4389 4577 4.026052 TCTCCATGTGAACTATGAGCTGA 58.974 43.478 0.00 0.00 0.00 4.26
4390 4578 4.370049 CTCTCCATGTGAACTATGAGCTG 58.630 47.826 0.00 0.00 0.00 4.24
4391 4579 3.387374 CCTCTCCATGTGAACTATGAGCT 59.613 47.826 0.00 0.00 0.00 4.09
4392 4580 3.494048 CCCTCTCCATGTGAACTATGAGC 60.494 52.174 0.00 0.00 0.00 4.26
4393 4581 3.494048 GCCCTCTCCATGTGAACTATGAG 60.494 52.174 0.00 0.00 0.00 2.90
4394 4582 2.435805 GCCCTCTCCATGTGAACTATGA 59.564 50.000 0.00 0.00 0.00 2.15
4395 4583 2.804572 CGCCCTCTCCATGTGAACTATG 60.805 54.545 0.00 0.00 0.00 2.23
4396 4584 1.414181 CGCCCTCTCCATGTGAACTAT 59.586 52.381 0.00 0.00 0.00 2.12
4397 4585 0.824109 CGCCCTCTCCATGTGAACTA 59.176 55.000 0.00 0.00 0.00 2.24
4398 4586 1.599047 CGCCCTCTCCATGTGAACT 59.401 57.895 0.00 0.00 0.00 3.01
4399 4587 1.450312 CCGCCCTCTCCATGTGAAC 60.450 63.158 0.00 0.00 0.00 3.18
4400 4588 2.669133 CCCGCCCTCTCCATGTGAA 61.669 63.158 0.00 0.00 0.00 3.18
4401 4589 2.896677 ATCCCGCCCTCTCCATGTGA 62.897 60.000 0.00 0.00 0.00 3.58
4402 4590 2.388890 GATCCCGCCCTCTCCATGTG 62.389 65.000 0.00 0.00 0.00 3.21
4403 4591 2.040464 ATCCCGCCCTCTCCATGT 60.040 61.111 0.00 0.00 0.00 3.21
4404 4592 2.746359 GATCCCGCCCTCTCCATG 59.254 66.667 0.00 0.00 0.00 3.66
4405 4593 2.919856 CGATCCCGCCCTCTCCAT 60.920 66.667 0.00 0.00 0.00 3.41
4406 4594 3.672338 TTCGATCCCGCCCTCTCCA 62.672 63.158 0.00 0.00 35.37 3.86
4407 4595 2.838225 TTCGATCCCGCCCTCTCC 60.838 66.667 0.00 0.00 35.37 3.71
4408 4596 2.417936 GTTCGATCCCGCCCTCTC 59.582 66.667 0.00 0.00 35.37 3.20
4409 4597 3.528370 CGTTCGATCCCGCCCTCT 61.528 66.667 0.00 0.00 35.37 3.69
4410 4598 3.834799 ACGTTCGATCCCGCCCTC 61.835 66.667 0.00 0.00 35.37 4.30
4411 4599 4.143333 CACGTTCGATCCCGCCCT 62.143 66.667 0.00 0.00 35.37 5.19
4414 4602 4.814294 AGGCACGTTCGATCCCGC 62.814 66.667 0.00 0.00 35.37 6.13
4415 4603 2.885644 CAGGCACGTTCGATCCCG 60.886 66.667 0.00 0.00 37.07 5.14
4416 4604 1.519455 CTCAGGCACGTTCGATCCC 60.519 63.158 0.00 0.00 0.00 3.85
4417 4605 1.519455 CCTCAGGCACGTTCGATCC 60.519 63.158 0.00 0.00 0.00 3.36
4418 4606 0.103208 ATCCTCAGGCACGTTCGATC 59.897 55.000 0.00 0.00 0.00 3.69
4419 4607 0.103208 GATCCTCAGGCACGTTCGAT 59.897 55.000 0.00 0.00 0.00 3.59
4420 4608 1.248101 TGATCCTCAGGCACGTTCGA 61.248 55.000 0.00 0.00 0.00 3.71
4421 4609 1.078759 GTGATCCTCAGGCACGTTCG 61.079 60.000 0.00 0.00 0.00 3.95
4422 4610 0.247736 AGTGATCCTCAGGCACGTTC 59.752 55.000 0.00 0.00 37.60 3.95
4423 4611 0.687354 AAGTGATCCTCAGGCACGTT 59.313 50.000 0.00 0.00 37.60 3.99
4424 4612 0.247736 GAAGTGATCCTCAGGCACGT 59.752 55.000 0.00 0.00 37.60 4.49
4425 4613 0.534412 AGAAGTGATCCTCAGGCACG 59.466 55.000 0.00 0.00 37.60 5.34
4426 4614 2.763448 AGTAGAAGTGATCCTCAGGCAC 59.237 50.000 0.00 0.00 0.00 5.01
4427 4615 3.027412 GAGTAGAAGTGATCCTCAGGCA 58.973 50.000 0.00 0.00 0.00 4.75
4428 4616 2.364002 GGAGTAGAAGTGATCCTCAGGC 59.636 54.545 0.00 0.00 0.00 4.85
4429 4617 2.962421 GGGAGTAGAAGTGATCCTCAGG 59.038 54.545 0.00 0.00 32.18 3.86
4430 4618 3.888930 GAGGGAGTAGAAGTGATCCTCAG 59.111 52.174 0.00 0.00 39.14 3.35
4431 4619 3.373220 GGAGGGAGTAGAAGTGATCCTCA 60.373 52.174 0.00 0.00 40.58 3.86
4432 4620 3.227614 GGAGGGAGTAGAAGTGATCCTC 58.772 54.545 0.00 0.00 38.74 3.71
4433 4621 2.587777 TGGAGGGAGTAGAAGTGATCCT 59.412 50.000 0.00 0.00 32.18 3.24
4434 4622 3.033659 TGGAGGGAGTAGAAGTGATCC 57.966 52.381 0.00 0.00 0.00 3.36
4435 4623 4.039852 GGAATGGAGGGAGTAGAAGTGATC 59.960 50.000 0.00 0.00 0.00 2.92
4436 4624 3.970640 GGAATGGAGGGAGTAGAAGTGAT 59.029 47.826 0.00 0.00 0.00 3.06
4437 4625 3.012959 AGGAATGGAGGGAGTAGAAGTGA 59.987 47.826 0.00 0.00 0.00 3.41
4438 4626 3.379452 AGGAATGGAGGGAGTAGAAGTG 58.621 50.000 0.00 0.00 0.00 3.16
4439 4627 3.786213 AGGAATGGAGGGAGTAGAAGT 57.214 47.619 0.00 0.00 0.00 3.01
4440 4628 6.755542 AATTAGGAATGGAGGGAGTAGAAG 57.244 41.667 0.00 0.00 0.00 2.85
4441 4629 7.525158 AAAATTAGGAATGGAGGGAGTAGAA 57.475 36.000 0.00 0.00 0.00 2.10
4442 4630 7.525158 AAAAATTAGGAATGGAGGGAGTAGA 57.475 36.000 0.00 0.00 0.00 2.59
4467 4655 9.780186 TCGAATGTCTCTATAGTGAAATCTCTA 57.220 33.333 7.74 0.00 0.00 2.43
4468 4656 8.684386 TCGAATGTCTCTATAGTGAAATCTCT 57.316 34.615 7.74 0.00 0.00 3.10
4469 4657 9.906660 ATTCGAATGTCTCTATAGTGAAATCTC 57.093 33.333 10.50 7.22 0.00 2.75
4470 4658 9.689976 CATTCGAATGTCTCTATAGTGAAATCT 57.310 33.333 26.58 0.54 0.00 2.40
4471 4659 9.469807 ACATTCGAATGTCTCTATAGTGAAATC 57.530 33.333 32.82 5.66 46.10 2.17
4502 4690 9.030452 AGTGAACTTATACTCTGAAAGATGTCT 57.970 33.333 0.00 0.00 45.62 3.41
4503 4691 9.296400 GAGTGAACTTATACTCTGAAAGATGTC 57.704 37.037 0.00 0.00 45.62 3.06
4504 4692 8.807118 TGAGTGAACTTATACTCTGAAAGATGT 58.193 33.333 0.00 0.00 45.62 3.06
4505 4693 9.814899 ATGAGTGAACTTATACTCTGAAAGATG 57.185 33.333 0.00 0.00 45.62 2.90
4510 4698 8.721478 GCAAAATGAGTGAACTTATACTCTGAA 58.279 33.333 0.00 0.00 42.86 3.02
4511 4699 8.097038 AGCAAAATGAGTGAACTTATACTCTGA 58.903 33.333 0.00 0.00 42.86 3.27
4512 4700 8.261492 AGCAAAATGAGTGAACTTATACTCTG 57.739 34.615 0.00 0.00 42.86 3.35
4513 4701 7.550906 GGAGCAAAATGAGTGAACTTATACTCT 59.449 37.037 0.00 0.00 42.86 3.24
4514 4702 7.464710 CGGAGCAAAATGAGTGAACTTATACTC 60.465 40.741 0.00 0.00 42.77 2.59
4515 4703 6.313905 CGGAGCAAAATGAGTGAACTTATACT 59.686 38.462 0.00 0.00 0.00 2.12
4516 4704 6.092259 ACGGAGCAAAATGAGTGAACTTATAC 59.908 38.462 0.00 0.00 0.00 1.47
4517 4705 6.170506 ACGGAGCAAAATGAGTGAACTTATA 58.829 36.000 0.00 0.00 0.00 0.98
4518 4706 5.003804 ACGGAGCAAAATGAGTGAACTTAT 58.996 37.500 0.00 0.00 0.00 1.73
4519 4707 4.385825 ACGGAGCAAAATGAGTGAACTTA 58.614 39.130 0.00 0.00 0.00 2.24
4520 4708 3.214328 ACGGAGCAAAATGAGTGAACTT 58.786 40.909 0.00 0.00 0.00 2.66
4521 4709 2.851195 ACGGAGCAAAATGAGTGAACT 58.149 42.857 0.00 0.00 0.00 3.01
4522 4710 4.154195 ACATACGGAGCAAAATGAGTGAAC 59.846 41.667 0.00 0.00 0.00 3.18
4523 4711 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4524 4712 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4525 4713 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4526 4714 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4527 4715 5.352284 AGACTACATACGGAGCAAAATGAG 58.648 41.667 0.00 0.00 0.00 2.90
4528 4716 5.339008 AGACTACATACGGAGCAAAATGA 57.661 39.130 0.00 0.00 0.00 2.57
4529 4717 8.812147 TTATAGACTACATACGGAGCAAAATG 57.188 34.615 0.00 0.00 0.00 2.32
4530 4718 9.477484 CTTTATAGACTACATACGGAGCAAAAT 57.523 33.333 0.00 0.00 0.00 1.82
4531 4719 8.689061 TCTTTATAGACTACATACGGAGCAAAA 58.311 33.333 0.00 0.00 0.00 2.44
4532 4720 8.229253 TCTTTATAGACTACATACGGAGCAAA 57.771 34.615 0.00 0.00 0.00 3.68
4533 4721 7.812690 TCTTTATAGACTACATACGGAGCAA 57.187 36.000 0.00 0.00 0.00 3.91
4534 4722 7.812690 TTCTTTATAGACTACATACGGAGCA 57.187 36.000 0.00 0.00 0.00 4.26
4535 4723 9.344309 GATTTCTTTATAGACTACATACGGAGC 57.656 37.037 0.00 0.00 0.00 4.70
4565 4753 7.991460 CCTCCGTTCCTAAATATAAGTCCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4566 4754 7.126879 ACCTCCGTTCCTAAATATAAGTCCTTT 59.873 37.037 0.00 0.00 0.00 3.11
4567 4755 6.614496 ACCTCCGTTCCTAAATATAAGTCCTT 59.386 38.462 0.00 0.00 0.00 3.36
4568 4756 6.141790 ACCTCCGTTCCTAAATATAAGTCCT 58.858 40.000 0.00 0.00 0.00 3.85
4569 4757 6.416631 ACCTCCGTTCCTAAATATAAGTCC 57.583 41.667 0.00 0.00 0.00 3.85
4570 4758 6.267242 AGGACCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 42.08 3.01
4571 4759 6.141790 AGGACCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 42.08 2.24
4572 4760 6.667558 AGGACCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 42.08 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.