Multiple sequence alignment - TraesCS2A01G319500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G319500 chr2A 100.000 2261 0 0 1 2261 546342206 546344466 0.000000e+00 4176.0
1 TraesCS2A01G319500 chr2A 88.179 626 67 5 1639 2261 666053171 666053792 0.000000e+00 739.0
2 TraesCS2A01G319500 chr2D 91.873 1575 92 13 2 1549 406732265 406733830 0.000000e+00 2167.0
3 TraesCS2A01G319500 chr2D 83.222 751 75 24 552 1277 406695195 406695919 1.890000e-180 641.0
4 TraesCS2A01G319500 chr2D 83.486 109 14 4 235 341 51002862 51002756 5.140000e-17 99.0
5 TraesCS2A01G319500 chr2B 91.457 1311 69 17 338 1634 482709437 482710718 0.000000e+00 1760.0
6 TraesCS2A01G319500 chr2B 81.570 293 34 12 1708 1997 709991456 709991181 8.130000e-55 224.0
7 TraesCS2A01G319500 chr6B 88.978 626 53 7 1638 2261 592978807 592978196 0.000000e+00 760.0
8 TraesCS2A01G319500 chr5D 88.178 516 53 8 1638 2149 57174553 57174042 1.920000e-170 608.0
9 TraesCS2A01G319500 chr5A 84.261 629 73 12 1638 2261 340306449 340307056 6.960000e-165 590.0
10 TraesCS2A01G319500 chr5A 82.803 157 23 4 255 410 585120727 585120880 1.090000e-28 137.0
11 TraesCS2A01G319500 chr5A 84.259 108 13 4 236 341 645974888 645974783 3.970000e-18 102.0
12 TraesCS2A01G319500 chr3B 82.801 657 86 18 1627 2261 692111219 692110568 1.520000e-156 562.0
13 TraesCS2A01G319500 chr3B 84.971 346 42 3 1926 2261 532671746 532672091 2.150000e-90 342.0
14 TraesCS2A01G319500 chr3B 83.908 87 14 0 255 341 743547861 743547947 1.440000e-12 84.2
15 TraesCS2A01G319500 chr3A 82.540 630 101 7 1638 2261 167676987 167677613 1.530000e-151 545.0
16 TraesCS2A01G319500 chr4B 82.038 373 49 12 1638 2006 211983237 211983595 3.650000e-78 302.0
17 TraesCS2A01G319500 chr4B 85.185 270 30 2 2002 2261 212001737 212002006 3.700000e-68 268.0
18 TraesCS2A01G319500 chr4A 85.321 218 22 3 2052 2259 698836771 698836988 1.360000e-52 217.0
19 TraesCS2A01G319500 chr4A 78.916 166 22 10 248 410 685815628 685815473 1.430000e-17 100.0
20 TraesCS2A01G319500 chr4D 80.000 245 33 10 2027 2259 497363533 497363773 1.390000e-37 167.0
21 TraesCS2A01G319500 chr1B 76.562 128 24 6 1626 1750 88111923 88112047 5.210000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G319500 chr2A 546342206 546344466 2260 False 4176 4176 100.000 1 2261 1 chr2A.!!$F1 2260
1 TraesCS2A01G319500 chr2A 666053171 666053792 621 False 739 739 88.179 1639 2261 1 chr2A.!!$F2 622
2 TraesCS2A01G319500 chr2D 406732265 406733830 1565 False 2167 2167 91.873 2 1549 1 chr2D.!!$F2 1547
3 TraesCS2A01G319500 chr2D 406695195 406695919 724 False 641 641 83.222 552 1277 1 chr2D.!!$F1 725
4 TraesCS2A01G319500 chr2B 482709437 482710718 1281 False 1760 1760 91.457 338 1634 1 chr2B.!!$F1 1296
5 TraesCS2A01G319500 chr6B 592978196 592978807 611 True 760 760 88.978 1638 2261 1 chr6B.!!$R1 623
6 TraesCS2A01G319500 chr5D 57174042 57174553 511 True 608 608 88.178 1638 2149 1 chr5D.!!$R1 511
7 TraesCS2A01G319500 chr5A 340306449 340307056 607 False 590 590 84.261 1638 2261 1 chr5A.!!$F1 623
8 TraesCS2A01G319500 chr3B 692110568 692111219 651 True 562 562 82.801 1627 2261 1 chr3B.!!$R1 634
9 TraesCS2A01G319500 chr3A 167676987 167677613 626 False 545 545 82.540 1638 2261 1 chr3A.!!$F1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 985 0.320683 CAGCACCAACCGAGACATCA 60.321 55.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1867 0.59868 CCTCCCGCTTCTATCGCTTG 60.599 60.0 0.0 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.959042 ATTTATGGCTGAGAGCACGG 58.041 50.000 0.00 0.00 44.75 4.94
44 45 3.694566 ACGGAATCAGATTAAAAGTGGGC 59.305 43.478 0.00 0.00 0.00 5.36
49 50 2.039216 TCAGATTAAAAGTGGGCGGTCA 59.961 45.455 0.00 0.00 0.00 4.02
57 58 0.623723 AGTGGGCGGTCATGGTTTAT 59.376 50.000 0.00 0.00 0.00 1.40
71 75 9.581099 GGTCATGGTTTATAGTAAAAACAATGG 57.419 33.333 13.40 0.35 43.73 3.16
93 97 3.846405 AAGAGGTGGTGGAGCCGGA 62.846 63.158 5.05 0.00 41.21 5.14
136 140 0.391228 TACAGTGTGTGGATGCGTGT 59.609 50.000 5.88 0.00 0.00 4.49
149 153 3.365868 GGATGCGTGTGAAAACATAAGCA 60.366 43.478 9.29 9.29 37.77 3.91
150 154 3.913548 TGCGTGTGAAAACATAAGCAT 57.086 38.095 0.00 0.00 0.00 3.79
161 165 8.034804 GTGAAAACATAAGCATCCTAACCAAAT 58.965 33.333 0.00 0.00 0.00 2.32
166 170 9.646522 AACATAAGCATCCTAACCAAATAAGAT 57.353 29.630 0.00 0.00 0.00 2.40
176 180 6.884295 CCTAACCAAATAAGATTGTCCTCACA 59.116 38.462 0.00 0.00 0.00 3.58
178 182 7.781324 AACCAAATAAGATTGTCCTCACATT 57.219 32.000 0.00 0.00 30.55 2.71
179 183 8.877864 AACCAAATAAGATTGTCCTCACATTA 57.122 30.769 0.00 0.00 30.55 1.90
180 184 9.479549 AACCAAATAAGATTGTCCTCACATTAT 57.520 29.630 0.00 0.00 30.55 1.28
194 202 3.996363 TCACATTATCGATGCCATGCTAC 59.004 43.478 8.54 0.00 39.47 3.58
200 208 1.068588 TCGATGCCATGCTACTGGTAC 59.931 52.381 0.00 0.00 38.63 3.34
201 209 1.202521 CGATGCCATGCTACTGGTACA 60.203 52.381 0.00 0.00 38.63 2.90
209 217 1.202521 TGCTACTGGTACATCATGCGG 60.203 52.381 0.00 0.00 38.20 5.69
211 219 2.289072 GCTACTGGTACATCATGCGGAT 60.289 50.000 0.00 0.00 38.20 4.18
221 229 2.947448 TCATGCGGATGGATCGATAG 57.053 50.000 17.41 0.00 0.00 2.08
240 248 6.998673 TCGATAGTGATCCTTGTTCTAGATGA 59.001 38.462 0.00 0.00 37.40 2.92
243 251 8.718158 ATAGTGATCCTTGTTCTAGATGATGA 57.282 34.615 0.00 0.00 0.00 2.92
244 252 7.053316 AGTGATCCTTGTTCTAGATGATGAG 57.947 40.000 0.00 0.00 0.00 2.90
245 253 6.041865 AGTGATCCTTGTTCTAGATGATGAGG 59.958 42.308 0.00 0.00 0.00 3.86
258 266 5.856156 AGATGATGAGGAGTGATGACATTC 58.144 41.667 0.00 0.00 33.02 2.67
277 292 7.339212 TGACATTCCCCATTATCAAGTTTGTAG 59.661 37.037 0.00 0.00 0.00 2.74
284 299 6.432783 CCCATTATCAAGTTTGTAGGTGTGAA 59.567 38.462 0.00 0.00 0.00 3.18
287 302 8.729756 CATTATCAAGTTTGTAGGTGTGAATGA 58.270 33.333 0.00 0.00 0.00 2.57
289 304 6.558771 TCAAGTTTGTAGGTGTGAATGATG 57.441 37.500 0.00 0.00 0.00 3.07
290 305 6.295249 TCAAGTTTGTAGGTGTGAATGATGA 58.705 36.000 0.00 0.00 0.00 2.92
294 309 6.428159 AGTTTGTAGGTGTGAATGATGACTTC 59.572 38.462 0.00 0.00 0.00 3.01
296 311 2.977914 AGGTGTGAATGATGACTTCGG 58.022 47.619 0.00 0.00 0.00 4.30
309 324 4.074627 TGACTTCGGGTTGTTTGATGTA 57.925 40.909 0.00 0.00 0.00 2.29
311 326 5.795972 TGACTTCGGGTTGTTTGATGTATA 58.204 37.500 0.00 0.00 0.00 1.47
312 327 6.411376 TGACTTCGGGTTGTTTGATGTATAT 58.589 36.000 0.00 0.00 0.00 0.86
581 611 7.151976 GTGCAAGTGACCATAATTTAAAACCT 58.848 34.615 0.00 0.00 0.00 3.50
605 635 2.261671 GTGTGATCCCGCGTGACT 59.738 61.111 4.92 0.00 0.00 3.41
662 692 1.154016 AGTCAGGAACACGATCGCG 60.154 57.895 16.60 8.62 44.79 5.87
714 757 1.737201 GAACCAACCAACCAACCGG 59.263 57.895 0.00 0.00 38.77 5.28
762 808 2.034066 GTGCAGGCAGGGCAAGTA 59.966 61.111 0.00 0.00 43.91 2.24
775 821 2.292292 GGGCAAGTATCAACGTTGTGTT 59.708 45.455 26.47 15.38 43.09 3.32
937 985 0.320683 CAGCACCAACCGAGACATCA 60.321 55.000 0.00 0.00 0.00 3.07
974 1025 3.876589 TTCCTCTGCAACGACGGCC 62.877 63.158 0.00 0.00 0.00 6.13
1141 1193 3.144120 ATACTGCAGAGGAGCGCCG 62.144 63.158 23.35 0.00 39.96 6.46
1146 1198 4.504916 CAGAGGAGCGCCGTGGAG 62.505 72.222 2.29 0.00 39.96 3.86
1163 1215 2.436646 GGTGGAGGTGGATGTGCG 60.437 66.667 0.00 0.00 0.00 5.34
1372 1424 3.276091 CTTCGTGCACGCACCCAA 61.276 61.111 33.63 20.68 43.49 4.12
1445 1497 0.317103 CACGGAGCGATCGTTCTAGG 60.317 60.000 27.49 19.67 38.94 3.02
1446 1498 0.747283 ACGGAGCGATCGTTCTAGGT 60.747 55.000 27.49 20.21 37.61 3.08
1466 1518 1.338020 TGATCGATCAGTCCGGATGTG 59.662 52.381 23.99 9.14 32.11 3.21
1484 1536 6.365050 GGATGTGAATGTTTTTGCAAATGAC 58.635 36.000 13.65 14.81 0.00 3.06
1503 1555 9.144747 CAAATGACGGAGGATTACTTATAGATG 57.855 37.037 0.00 0.00 0.00 2.90
1528 1580 3.747099 CCATGATCTCGTGGTGTTTTC 57.253 47.619 9.84 0.00 45.66 2.29
1529 1581 3.338249 CCATGATCTCGTGGTGTTTTCT 58.662 45.455 9.84 0.00 45.66 2.52
1530 1582 3.125829 CCATGATCTCGTGGTGTTTTCTG 59.874 47.826 9.84 0.00 45.66 3.02
1532 1584 3.804036 TGATCTCGTGGTGTTTTCTGTT 58.196 40.909 0.00 0.00 0.00 3.16
1533 1585 3.559655 TGATCTCGTGGTGTTTTCTGTTG 59.440 43.478 0.00 0.00 0.00 3.33
1538 1590 3.372822 TCGTGGTGTTTTCTGTTGAAGTC 59.627 43.478 0.00 0.00 33.28 3.01
1630 1682 6.961360 AGGAAACCTTTAACTCCTCAAAAG 57.039 37.500 0.00 0.00 32.68 2.27
1634 1686 8.421784 GGAAACCTTTAACTCCTCAAAAGAAAT 58.578 33.333 0.00 0.00 33.05 2.17
1636 1688 8.768501 AACCTTTAACTCCTCAAAAGAAATCT 57.231 30.769 0.00 0.00 33.05 2.40
1822 1880 0.025513 CACGTGCAAGCGATAGAAGC 59.974 55.000 0.82 0.00 39.76 3.86
1833 1892 1.543650 CGATAGAAGCGGGAGGAGAGA 60.544 57.143 0.00 0.00 39.76 3.10
1842 1901 1.303615 GGAGGAGAGAGGGTCGTGA 59.696 63.158 0.00 0.00 0.00 4.35
1898 1960 0.755698 GTCGGTGCTCTCTCCCCATA 60.756 60.000 0.00 0.00 0.00 2.74
1920 1989 7.147828 CCATACAGAGTTTAGTCTTCATCCTCA 60.148 40.741 0.00 0.00 0.00 3.86
1981 2050 4.496429 ACGGAGTCCTCAAGTCGT 57.504 55.556 7.77 0.00 29.74 4.34
2005 2074 4.400961 GCTTGCGGGTGGCTCTCT 62.401 66.667 0.00 0.00 44.05 3.10
2030 2099 1.741770 GGAATCGCTGGTGCTCGTT 60.742 57.895 0.00 0.00 36.97 3.85
2064 2134 1.085893 GCTCTGCTTCTCCTTGCTTC 58.914 55.000 0.00 0.00 0.00 3.86
2077 2147 3.011821 TCCTTGCTTCTCCTTCCTCTCTA 59.988 47.826 0.00 0.00 0.00 2.43
2090 2160 1.133761 CCTCTCTATGTCTCGGTGGGA 60.134 57.143 0.00 0.00 0.00 4.37
2166 2250 3.956199 ACTGCTCCCATTTATGGTCAATG 59.044 43.478 7.92 0.00 46.65 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.967674 CGTGCTCTCAGCCATAAATTTTAAG 59.032 40.000 0.00 0.00 41.51 1.85
5 6 2.092968 TCCGTGCTCTCAGCCATAAATT 60.093 45.455 0.00 0.00 41.51 1.82
10 11 0.179062 GATTCCGTGCTCTCAGCCAT 60.179 55.000 0.00 0.00 41.51 4.40
22 23 3.694566 GCCCACTTTTAATCTGATTCCGT 59.305 43.478 6.10 0.00 0.00 4.69
25 26 3.694566 ACCGCCCACTTTTAATCTGATTC 59.305 43.478 6.10 0.00 0.00 2.52
44 45 9.284594 CATTGTTTTTACTATAAACCATGACCG 57.715 33.333 0.00 0.00 39.28 4.79
57 58 7.013846 CCACCTCTTGTTCCATTGTTTTTACTA 59.986 37.037 0.00 0.00 0.00 1.82
71 75 0.606673 GGCTCCACCACCTCTTGTTC 60.607 60.000 0.00 0.00 38.86 3.18
93 97 5.501156 AGGAAACTCGATAATTTTCAGCCT 58.499 37.500 9.70 0.00 32.90 4.58
102 106 6.590292 CACACACTGTAAGGAAACTCGATAAT 59.410 38.462 0.00 0.00 42.68 1.28
105 109 4.307432 CACACACTGTAAGGAAACTCGAT 58.693 43.478 0.00 0.00 42.68 3.59
136 140 7.531857 TTTGGTTAGGATGCTTATGTTTTCA 57.468 32.000 0.00 0.00 0.00 2.69
149 153 7.775561 GTGAGGACAATCTTATTTGGTTAGGAT 59.224 37.037 0.00 0.00 0.00 3.24
150 154 7.110155 GTGAGGACAATCTTATTTGGTTAGGA 58.890 38.462 0.00 0.00 0.00 2.94
161 165 6.646653 GCATCGATAATGTGAGGACAATCTTA 59.353 38.462 0.00 0.00 37.71 2.10
166 170 3.118445 TGGCATCGATAATGTGAGGACAA 60.118 43.478 0.00 0.00 37.71 3.18
176 180 3.008375 ACCAGTAGCATGGCATCGATAAT 59.992 43.478 0.00 0.00 44.80 1.28
178 182 1.970640 ACCAGTAGCATGGCATCGATA 59.029 47.619 0.00 0.00 44.80 2.92
179 183 0.761187 ACCAGTAGCATGGCATCGAT 59.239 50.000 0.00 0.00 44.80 3.59
180 184 1.068588 GTACCAGTAGCATGGCATCGA 59.931 52.381 0.00 0.00 44.80 3.59
201 209 2.762887 ACTATCGATCCATCCGCATGAT 59.237 45.455 0.00 0.00 30.57 2.45
213 221 7.441890 TCTAGAACAAGGATCACTATCGATC 57.558 40.000 0.00 0.00 40.98 3.69
219 227 7.232330 CCTCATCATCTAGAACAAGGATCACTA 59.768 40.741 0.00 0.00 0.00 2.74
221 229 6.041409 TCCTCATCATCTAGAACAAGGATCAC 59.959 42.308 0.00 0.00 31.27 3.06
228 236 6.608808 TCATCACTCCTCATCATCTAGAACAA 59.391 38.462 0.00 0.00 0.00 2.83
229 237 6.040278 GTCATCACTCCTCATCATCTAGAACA 59.960 42.308 0.00 0.00 0.00 3.18
240 248 2.441001 GGGGAATGTCATCACTCCTCAT 59.559 50.000 2.72 0.00 39.91 2.90
243 251 1.971149 TGGGGAATGTCATCACTCCT 58.029 50.000 9.38 0.00 39.59 3.69
244 252 3.303351 AATGGGGAATGTCATCACTCC 57.697 47.619 2.89 2.89 39.02 3.85
245 253 5.624159 TGATAATGGGGAATGTCATCACTC 58.376 41.667 0.00 0.00 0.00 3.51
258 266 5.125417 CACACCTACAAACTTGATAATGGGG 59.875 44.000 0.00 0.00 0.00 4.96
261 269 8.729756 TCATTCACACCTACAAACTTGATAATG 58.270 33.333 0.00 0.00 0.00 1.90
262 270 8.862325 TCATTCACACCTACAAACTTGATAAT 57.138 30.769 0.00 0.00 0.00 1.28
277 292 2.009774 CCCGAAGTCATCATTCACACC 58.990 52.381 0.00 0.00 0.00 4.16
284 299 3.750371 TCAAACAACCCGAAGTCATCAT 58.250 40.909 0.00 0.00 0.00 2.45
287 302 3.486383 ACATCAAACAACCCGAAGTCAT 58.514 40.909 0.00 0.00 0.00 3.06
289 304 6.920569 ATATACATCAAACAACCCGAAGTC 57.079 37.500 0.00 0.00 0.00 3.01
290 305 7.696992 AAATATACATCAAACAACCCGAAGT 57.303 32.000 0.00 0.00 0.00 3.01
345 360 8.914328 TCAATAGATGTACACATGCATTTTTG 57.086 30.769 0.00 0.00 36.57 2.44
605 635 2.635915 AGTTGGAACTGGGACATCGTTA 59.364 45.455 0.00 0.00 38.20 3.18
662 692 2.099141 TGTGCATTCAGGTGCTAGAC 57.901 50.000 0.00 0.00 45.27 2.59
663 693 3.432186 GGTATGTGCATTCAGGTGCTAGA 60.432 47.826 0.00 0.00 45.27 2.43
714 757 3.978855 GGGAAACACACGCTGAAATTAAC 59.021 43.478 0.00 0.00 0.00 2.01
775 821 1.363807 CAGTGCCTGACGACTGACA 59.636 57.895 0.00 0.00 41.90 3.58
937 985 0.323725 ATTCTGCTGTTGGCCGGATT 60.324 50.000 5.05 0.00 40.92 3.01
1141 1193 1.201429 ACATCCACCTCCACCTCCAC 61.201 60.000 0.00 0.00 0.00 4.02
1142 1194 1.160870 ACATCCACCTCCACCTCCA 59.839 57.895 0.00 0.00 0.00 3.86
1143 1195 1.604378 CACATCCACCTCCACCTCC 59.396 63.158 0.00 0.00 0.00 4.30
1144 1196 1.078143 GCACATCCACCTCCACCTC 60.078 63.158 0.00 0.00 0.00 3.85
1145 1197 2.959484 CGCACATCCACCTCCACCT 61.959 63.158 0.00 0.00 0.00 4.00
1146 1198 2.436646 CGCACATCCACCTCCACC 60.437 66.667 0.00 0.00 0.00 4.61
1282 1334 2.225343 TGGTTCCTCCATGGCTTCATTT 60.225 45.455 6.96 0.00 41.93 2.32
1323 1375 3.931907 AAACATCGATCCATTCCCTCA 57.068 42.857 0.00 0.00 0.00 3.86
1445 1497 1.338337 ACATCCGGACTGATCGATCAC 59.662 52.381 23.99 14.99 32.50 3.06
1446 1498 1.338020 CACATCCGGACTGATCGATCA 59.662 52.381 25.80 25.80 35.16 2.92
1456 1508 2.986479 GCAAAAACATTCACATCCGGAC 59.014 45.455 6.12 0.00 0.00 4.79
1466 1518 4.150451 CCTCCGTCATTTGCAAAAACATTC 59.850 41.667 17.19 3.44 0.00 2.67
1484 1536 8.148351 TGGAAAACATCTATAAGTAATCCTCCG 58.852 37.037 0.00 0.00 0.00 4.63
1503 1555 3.074412 ACACCACGAGATCATGGAAAAC 58.926 45.455 15.44 0.00 39.46 2.43
1521 1573 6.619801 ATGGTAGACTTCAACAGAAAACAC 57.380 37.500 0.00 0.00 0.00 3.32
1522 1574 6.601613 ACAATGGTAGACTTCAACAGAAAACA 59.398 34.615 0.00 0.00 0.00 2.83
1523 1575 7.027778 ACAATGGTAGACTTCAACAGAAAAC 57.972 36.000 0.00 0.00 0.00 2.43
1528 1580 7.099764 ACAGATACAATGGTAGACTTCAACAG 58.900 38.462 0.00 0.00 31.88 3.16
1529 1581 7.004555 ACAGATACAATGGTAGACTTCAACA 57.995 36.000 0.00 0.00 31.88 3.33
1530 1582 8.997621 TTACAGATACAATGGTAGACTTCAAC 57.002 34.615 0.00 0.00 31.88 3.18
1532 1584 9.653287 CTTTTACAGATACAATGGTAGACTTCA 57.347 33.333 0.00 0.00 31.88 3.02
1533 1585 8.604890 GCTTTTACAGATACAATGGTAGACTTC 58.395 37.037 0.00 0.00 31.88 3.01
1538 1590 6.757010 AGACGCTTTTACAGATACAATGGTAG 59.243 38.462 0.00 0.00 31.88 3.18
1610 1662 9.201989 AGATTTCTTTTGAGGAGTTAAAGGTTT 57.798 29.630 0.00 0.00 31.45 3.27
1630 1682 8.432359 CGTGCCATTTTAAGGTTTTAAGATTTC 58.568 33.333 0.00 0.00 30.84 2.17
1634 1686 5.224135 GCGTGCCATTTTAAGGTTTTAAGA 58.776 37.500 0.00 0.00 30.84 2.10
1636 1688 3.982058 CGCGTGCCATTTTAAGGTTTTAA 59.018 39.130 0.00 0.00 0.00 1.52
1650 1702 3.597675 TTAGATGGTGCGCGTGCCA 62.598 57.895 19.87 22.01 41.78 4.92
1651 1703 2.817834 TTAGATGGTGCGCGTGCC 60.818 61.111 19.87 11.20 41.78 5.01
1735 1787 2.966732 GCCAATCCCGACCAGGTGA 61.967 63.158 0.00 0.00 38.74 4.02
1760 1813 4.263572 CAACCACCCAGGACCGCA 62.264 66.667 0.00 0.00 41.22 5.69
1806 1864 1.638467 CCGCTTCTATCGCTTGCAC 59.362 57.895 0.00 0.00 0.00 4.57
1809 1867 0.598680 CCTCCCGCTTCTATCGCTTG 60.599 60.000 0.00 0.00 0.00 4.01
1822 1880 2.517402 CGACCCTCTCTCCTCCCG 60.517 72.222 0.00 0.00 0.00 5.14
1842 1901 1.209127 CAATTTCGAAACCGCCGCT 59.791 52.632 13.81 0.00 0.00 5.52
1898 1960 5.046950 GGTGAGGATGAAGACTAAACTCTGT 60.047 44.000 0.00 0.00 0.00 3.41
1920 1989 3.846405 TTCGGTGGAGAGGCCTGGT 62.846 63.158 12.00 0.00 37.63 4.00
1960 2029 2.182030 CTTGAGGACTCCGTCGCC 59.818 66.667 0.00 0.00 32.65 5.54
2039 2108 1.127343 AGGAGAAGCAGAGCATACCC 58.873 55.000 0.00 0.00 0.00 3.69
2064 2134 3.146066 CCGAGACATAGAGAGGAAGGAG 58.854 54.545 0.00 0.00 0.00 3.69
2077 2147 2.646175 CCACGTCCCACCGAGACAT 61.646 63.158 0.00 0.00 33.70 3.06
2090 2160 3.311110 AGTCCGGCACATCCACGT 61.311 61.111 0.00 0.00 34.01 4.49
2166 2250 2.660572 TCAGAGGGAGAGATGTGCTAC 58.339 52.381 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.