Multiple sequence alignment - TraesCS2A01G318900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G318900 chr2A 100.000 2794 0 0 1 2794 544285260 544288053 0.000000e+00 5160.0
1 TraesCS2A01G318900 chr2A 88.889 108 11 1 2592 2698 202777919 202777812 6.280000e-27 132.0
2 TraesCS2A01G318900 chr2D 91.500 1353 88 17 926 2266 406140637 406141974 0.000000e+00 1836.0
3 TraesCS2A01G318900 chr2D 84.046 865 93 22 3 840 406139590 406140436 0.000000e+00 791.0
4 TraesCS2A01G318900 chr2D 88.983 118 7 4 2367 2478 406142077 406142194 1.040000e-29 141.0
5 TraesCS2A01G318900 chr2B 93.655 1182 47 15 926 2093 481628483 481629650 0.000000e+00 1742.0
6 TraesCS2A01G318900 chr2B 92.382 932 55 7 3 921 481627392 481628320 0.000000e+00 1314.0
7 TraesCS2A01G318900 chr2B 89.982 559 31 10 1544 2093 702206438 702206980 0.000000e+00 699.0
8 TraesCS2A01G318900 chr2B 92.955 440 22 6 1660 2096 128053630 128053197 1.410000e-177 632.0
9 TraesCS2A01G318900 chr3A 93.139 787 38 8 926 1703 611010337 611011116 0.000000e+00 1140.0
10 TraesCS2A01G318900 chr3A 92.476 319 13 4 611 921 611009857 611010172 1.970000e-121 446.0
11 TraesCS2A01G318900 chr3A 92.163 319 13 4 611 921 714222879 714223193 9.190000e-120 440.0
12 TraesCS2A01G318900 chr3A 89.796 98 10 0 2697 2794 57085308 57085211 2.920000e-25 126.0
13 TraesCS2A01G318900 chr3A 86.458 96 12 1 2695 2789 27543469 27543374 1.370000e-18 104.0
14 TraesCS2A01G318900 chr7A 93.011 787 39 8 926 1703 21043216 21042437 0.000000e+00 1134.0
15 TraesCS2A01G318900 chr7A 92.884 787 40 8 926 1703 688929556 688930335 0.000000e+00 1129.0
16 TraesCS2A01G318900 chr7A 89.655 377 14 13 553 921 688929052 688929411 9.120000e-125 457.0
17 TraesCS2A01G318900 chr7A 92.790 319 13 4 611 921 21043697 21043381 1.180000e-123 453.0
18 TraesCS2A01G318900 chr7A 89.815 108 10 1 2592 2698 36996007 36995900 1.350000e-28 137.0
19 TraesCS2A01G318900 chr7A 86.777 121 14 2 2583 2701 289141626 289141746 1.750000e-27 134.0
20 TraesCS2A01G318900 chr5A 93.011 787 39 8 926 1703 663200992 663201771 0.000000e+00 1134.0
21 TraesCS2A01G318900 chr5A 93.417 319 11 4 611 921 542385091 542385407 5.450000e-127 464.0
22 TraesCS2A01G318900 chr5A 92.790 319 12 4 611 921 4425176 4425491 4.240000e-123 451.0
23 TraesCS2A01G318900 chr5A 89.390 377 15 13 553 921 663200471 663200830 4.240000e-123 451.0
24 TraesCS2A01G318900 chr5A 88.976 381 17 13 553 925 100350019 100349656 5.490000e-122 448.0
25 TraesCS2A01G318900 chr5A 88.136 118 13 1 2583 2699 598668188 598668305 3.750000e-29 139.0
26 TraesCS2A01G318900 chr5A 88.991 109 9 3 2592 2698 396184860 396184753 6.280000e-27 132.0
27 TraesCS2A01G318900 chr5A 88.889 108 11 1 2592 2698 553144337 553144230 6.280000e-27 132.0
28 TraesCS2A01G318900 chr5A 86.869 99 12 1 2696 2794 410200380 410200477 2.940000e-20 110.0
29 TraesCS2A01G318900 chr5A 85.417 96 12 2 2696 2789 6718147 6718242 6.370000e-17 99.0
30 TraesCS2A01G318900 chr5A 84.000 100 13 3 2697 2794 438781205 438781107 2.960000e-15 93.5
31 TraesCS2A01G318900 chr6A 92.884 787 40 8 926 1703 562225389 562224610 0.000000e+00 1129.0
32 TraesCS2A01G318900 chr3B 92.748 786 41 8 926 1702 778355526 778354748 0.000000e+00 1122.0
33 TraesCS2A01G318900 chr3B 92.532 549 26 7 1557 2096 738051719 738051177 0.000000e+00 773.0
34 TraesCS2A01G318900 chrUn 92.630 787 42 8 926 1703 308011760 308010981 0.000000e+00 1118.0
35 TraesCS2A01G318900 chrUn 96.098 205 7 1 721 925 308012124 308011921 1.600000e-87 333.0
36 TraesCS2A01G318900 chrUn 96.098 205 7 1 721 925 308106821 308107024 1.600000e-87 333.0
37 TraesCS2A01G318900 chrUn 96.098 205 7 1 721 925 323644452 323644655 1.600000e-87 333.0
38 TraesCS2A01G318900 chrUn 87.719 114 13 1 2583 2695 32095259 32095372 6.280000e-27 132.0
39 TraesCS2A01G318900 chr7B 91.637 562 32 6 1544 2096 63964205 63963650 0.000000e+00 763.0
40 TraesCS2A01G318900 chr7B 83.810 105 13 4 2692 2793 715656423 715656526 2.290000e-16 97.1
41 TraesCS2A01G318900 chr1B 91.637 562 32 6 1544 2096 152576517 152575962 0.000000e+00 763.0
42 TraesCS2A01G318900 chr1B 93.000 500 25 7 1601 2096 569796601 569796108 0.000000e+00 721.0
43 TraesCS2A01G318900 chr1B 90.536 560 29 10 1544 2096 639385099 639384557 0.000000e+00 719.0
44 TraesCS2A01G318900 chr1B 88.776 98 10 1 2697 2794 306237353 306237449 4.890000e-23 119.0
45 TraesCS2A01G318900 chr1B 83.333 90 14 1 2178 2266 152575951 152575862 6.410000e-12 82.4
46 TraesCS2A01G318900 chr4A 93.417 319 11 4 611 921 644677445 644677761 5.450000e-127 464.0
47 TraesCS2A01G318900 chr4A 92.790 319 13 4 611 921 644725898 644726214 1.180000e-123 453.0
48 TraesCS2A01G318900 chr4A 87.719 114 13 1 2583 2695 429978680 429978793 6.280000e-27 132.0
49 TraesCS2A01G318900 chr4A 84.848 99 14 1 2697 2794 606528984 606529082 6.370000e-17 99.0
50 TraesCS2A01G318900 chr1A 88.596 114 12 1 2583 2695 28615987 28616100 1.350000e-28 137.0
51 TraesCS2A01G318900 chr1A 89.109 101 10 1 2695 2794 139632328 139632428 1.050000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G318900 chr2A 544285260 544288053 2793 False 5160.000000 5160 100.000000 1 2794 1 chr2A.!!$F1 2793
1 TraesCS2A01G318900 chr2D 406139590 406142194 2604 False 922.666667 1836 88.176333 3 2478 3 chr2D.!!$F1 2475
2 TraesCS2A01G318900 chr2B 481627392 481629650 2258 False 1528.000000 1742 93.018500 3 2093 2 chr2B.!!$F2 2090
3 TraesCS2A01G318900 chr2B 702206438 702206980 542 False 699.000000 699 89.982000 1544 2093 1 chr2B.!!$F1 549
4 TraesCS2A01G318900 chr3A 611009857 611011116 1259 False 793.000000 1140 92.807500 611 1703 2 chr3A.!!$F2 1092
5 TraesCS2A01G318900 chr7A 21042437 21043697 1260 True 793.500000 1134 92.900500 611 1703 2 chr7A.!!$R2 1092
6 TraesCS2A01G318900 chr7A 688929052 688930335 1283 False 793.000000 1129 91.269500 553 1703 2 chr7A.!!$F2 1150
7 TraesCS2A01G318900 chr5A 663200471 663201771 1300 False 792.500000 1134 91.200500 553 1703 2 chr5A.!!$F6 1150
8 TraesCS2A01G318900 chr6A 562224610 562225389 779 True 1129.000000 1129 92.884000 926 1703 1 chr6A.!!$R1 777
9 TraesCS2A01G318900 chr3B 778354748 778355526 778 True 1122.000000 1122 92.748000 926 1702 1 chr3B.!!$R2 776
10 TraesCS2A01G318900 chr3B 738051177 738051719 542 True 773.000000 773 92.532000 1557 2096 1 chr3B.!!$R1 539
11 TraesCS2A01G318900 chrUn 308010981 308012124 1143 True 725.500000 1118 94.364000 721 1703 2 chrUn.!!$R1 982
12 TraesCS2A01G318900 chr7B 63963650 63964205 555 True 763.000000 763 91.637000 1544 2096 1 chr7B.!!$R1 552
13 TraesCS2A01G318900 chr1B 639384557 639385099 542 True 719.000000 719 90.536000 1544 2096 1 chr1B.!!$R2 552
14 TraesCS2A01G318900 chr1B 152575862 152576517 655 True 422.700000 763 87.485000 1544 2266 2 chr1B.!!$R3 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 142 1.210204 TCTGCTGGCCCCTCAAATCT 61.21 55.0 0.0 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1910 2150 0.526211 TGGCACAGAGTACGCTACTG 59.474 55.0 0.0 5.01 39.59 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.583054 ATGATTTCGCGTCTTAGCCC 58.417 50.000 5.77 0.00 0.00 5.19
39 40 4.437524 GCGTCTTAGCCCTCAAAAGAATTC 60.438 45.833 0.00 0.00 31.41 2.17
59 60 1.413382 CCGCAGATCTGTAGATTCGC 58.587 55.000 23.38 5.99 34.37 4.70
65 66 4.788690 CAGATCTGTAGATTCGCGTACAT 58.211 43.478 14.95 0.00 34.37 2.29
113 114 3.443329 TGTGCCATATTTGATTTGCGTCT 59.557 39.130 0.00 0.00 0.00 4.18
117 121 4.500477 GCCATATTTGATTTGCGTCTGTTC 59.500 41.667 0.00 0.00 0.00 3.18
138 142 1.210204 TCTGCTGGCCCCTCAAATCT 61.210 55.000 0.00 0.00 0.00 2.40
149 153 5.437060 GCCCCTCAAATCTGTAGTTTCATA 58.563 41.667 0.00 0.00 0.00 2.15
157 162 9.990360 TCAAATCTGTAGTTTCATAGTGTTACA 57.010 29.630 0.00 0.00 0.00 2.41
176 181 7.691050 GTGTTACAGTGGTATAAATTTCGCTTC 59.309 37.037 0.00 0.00 0.00 3.86
179 184 5.063060 ACAGTGGTATAAATTTCGCTTCGAC 59.937 40.000 0.00 0.00 34.89 4.20
186 191 8.545420 GGTATAAATTTCGCTTCGACTTATTGA 58.455 33.333 0.00 0.00 34.89 2.57
197 202 3.058085 TCGACTTATTGACGTGTGTGCTA 60.058 43.478 0.00 0.00 35.51 3.49
208 213 6.106003 TGACGTGTGTGCTATATCTTTTGAT 58.894 36.000 0.00 0.00 42.66 2.57
271 276 7.172190 GGTTGGTAGTTTCTTTTAGGACTGTAC 59.828 40.741 0.00 0.00 0.00 2.90
298 303 3.383825 GGAAAGAATTGGCATGAGCTCAT 59.616 43.478 23.75 23.75 41.70 2.90
300 305 5.278364 GGAAAGAATTGGCATGAGCTCATAG 60.278 44.000 28.27 21.64 41.70 2.23
387 400 7.538303 AATTTTGTTACTGTTTTGAGCTTGG 57.462 32.000 0.00 0.00 0.00 3.61
431 444 8.679725 AGTCTAGGTATCTGGGAATGATAGTAA 58.320 37.037 0.00 0.00 0.00 2.24
473 486 6.376018 ACTTGTCTACTCTGATAGTGGAAGTC 59.624 42.308 0.00 0.00 46.10 3.01
491 504 5.069516 GGAAGTCAATTGGGTGCATTGATAT 59.930 40.000 5.42 0.00 41.55 1.63
626 660 9.546909 CTTGTGATAAACTAAAAGCATACACAG 57.453 33.333 0.00 0.00 36.27 3.66
648 682 8.709386 ACAGATAACTATGTGAAGTTGATGTC 57.291 34.615 1.19 0.00 39.95 3.06
650 684 6.980978 AGATAACTATGTGAAGTTGATGTCCG 59.019 38.462 0.00 0.00 39.95 4.79
719 753 6.017400 TGCTATTTCTTTTCTTGCTTCTGG 57.983 37.500 0.00 0.00 0.00 3.86
930 1152 4.717233 ACACTGCATTCTGTTTTTGTGA 57.283 36.364 2.84 0.00 0.00 3.58
1023 1246 0.248539 CTCGTACTAAGCAGACCGCC 60.249 60.000 0.00 0.00 44.04 6.13
1050 1273 1.301293 CACTGGAGGAAAGGCTCCC 59.699 63.158 0.00 0.00 46.81 4.30
1169 1395 6.484364 AATTTGAACCTCAACCTTCATTGT 57.516 33.333 0.00 0.00 35.89 2.71
1365 1594 2.565841 CCTTCCAACCTATGCTAGCAC 58.434 52.381 22.07 0.00 0.00 4.40
1366 1595 2.092968 CCTTCCAACCTATGCTAGCACA 60.093 50.000 22.07 7.80 0.00 4.57
1379 1608 6.829229 ATGCTAGCACATGTTATTGCATAT 57.171 33.333 22.07 0.00 41.48 1.78
1380 1609 6.004408 TGCTAGCACATGTTATTGCATATG 57.996 37.500 14.93 0.00 41.48 1.78
1391 1620 9.757859 CATGTTATTGCATATGGTTTTGTTTTC 57.242 29.630 4.56 0.00 0.00 2.29
1450 1680 1.899814 AGTGAGATCCGCAAGTACCAA 59.100 47.619 0.00 0.00 0.00 3.67
1551 1781 0.447801 CGACTTGTGCCCTACATTGC 59.552 55.000 0.00 0.00 39.48 3.56
1553 1783 1.740025 GACTTGTGCCCTACATTGCTC 59.260 52.381 0.00 0.00 39.48 4.26
1555 1785 2.224867 ACTTGTGCCCTACATTGCTCTT 60.225 45.455 0.00 0.00 39.48 2.85
1570 1802 4.462508 TGCTCTTCTCCTGTTATGTCAG 57.537 45.455 0.00 0.00 35.45 3.51
1579 1811 8.484214 TTCTCCTGTTATGTCAGCTCTTATAT 57.516 34.615 0.00 0.00 34.47 0.86
1580 1812 8.116651 TCTCCTGTTATGTCAGCTCTTATATC 57.883 38.462 0.00 0.00 34.47 1.63
1591 1829 9.755804 TGTCAGCTCTTATATCAATCAAGTAAG 57.244 33.333 0.00 0.00 0.00 2.34
1800 2040 0.460987 CGAGAGGGCTTAAGGTGCTG 60.461 60.000 4.29 0.00 0.00 4.41
1801 2041 0.615850 GAGAGGGCTTAAGGTGCTGT 59.384 55.000 4.29 0.00 0.00 4.40
1802 2042 0.326264 AGAGGGCTTAAGGTGCTGTG 59.674 55.000 4.29 0.00 0.00 3.66
1803 2043 1.303643 AGGGCTTAAGGTGCTGTGC 60.304 57.895 4.29 0.00 0.00 4.57
1804 2044 1.303643 GGGCTTAAGGTGCTGTGCT 60.304 57.895 4.29 0.00 0.00 4.40
1808 2048 0.242017 CTTAAGGTGCTGTGCTTGCC 59.758 55.000 0.00 0.00 0.00 4.52
1823 2063 0.899717 TTGCCTTGCCTGTGGGAATC 60.900 55.000 0.00 0.00 31.43 2.52
1908 2148 7.478322 ACTAATACTGGTCGTGTGTAGTAATG 58.522 38.462 0.00 0.00 0.00 1.90
1910 2150 4.170292 ACTGGTCGTGTGTAGTAATGTC 57.830 45.455 0.00 0.00 0.00 3.06
1911 2151 3.570975 ACTGGTCGTGTGTAGTAATGTCA 59.429 43.478 0.00 0.00 0.00 3.58
1912 2152 4.166523 CTGGTCGTGTGTAGTAATGTCAG 58.833 47.826 0.00 0.00 0.00 3.51
1913 2153 3.570975 TGGTCGTGTGTAGTAATGTCAGT 59.429 43.478 0.00 0.00 0.00 3.41
1914 2154 4.761227 TGGTCGTGTGTAGTAATGTCAGTA 59.239 41.667 0.00 0.00 0.00 2.74
1915 2155 5.106436 TGGTCGTGTGTAGTAATGTCAGTAG 60.106 44.000 0.00 0.00 0.00 2.57
1916 2156 4.792189 GTCGTGTGTAGTAATGTCAGTAGC 59.208 45.833 0.00 0.00 0.00 3.58
1917 2157 3.784468 CGTGTGTAGTAATGTCAGTAGCG 59.216 47.826 0.00 0.00 0.00 4.26
1918 2158 4.670992 CGTGTGTAGTAATGTCAGTAGCGT 60.671 45.833 0.00 0.00 0.00 5.07
1919 2159 5.446340 CGTGTGTAGTAATGTCAGTAGCGTA 60.446 44.000 0.00 0.00 0.00 4.42
1920 2160 5.736358 GTGTGTAGTAATGTCAGTAGCGTAC 59.264 44.000 0.00 0.00 0.00 3.67
1923 2163 6.036953 GTGTAGTAATGTCAGTAGCGTACTCT 59.963 42.308 0.00 0.00 36.76 3.24
1971 2223 2.828877 TCATTTGTTCGTTGGTCGTCT 58.171 42.857 0.00 0.00 40.80 4.18
2043 2295 8.345565 GTCTGAAAATTAGTGATTGTGTGAACT 58.654 33.333 0.00 0.00 0.00 3.01
2085 2338 5.518847 TCTCGTTTTATTTGTATCTCTGCCG 59.481 40.000 0.00 0.00 0.00 5.69
2093 2346 1.822371 TGTATCTCTGCCGTGCAAGTA 59.178 47.619 0.00 0.00 38.41 2.24
2110 2363 4.280174 GCAAGTATGAATTGGGATGCATCT 59.720 41.667 25.28 5.84 33.42 2.90
2111 2364 5.769367 CAAGTATGAATTGGGATGCATCTG 58.231 41.667 25.28 7.87 33.42 2.90
2131 2385 4.765339 TCTGTGCTAGTAGCTGAACTGTTA 59.235 41.667 22.34 0.00 42.97 2.41
2142 2396 9.471702 AGTAGCTGAACTGTTATTAGTTAGGTA 57.528 33.333 0.00 0.00 40.78 3.08
2152 2406 3.906720 TTAGTTAGGTAGCTGGCAAGG 57.093 47.619 4.27 0.00 0.00 3.61
2160 2414 2.166459 GGTAGCTGGCAAGGGAAATTTC 59.834 50.000 9.83 9.83 0.00 2.17
2168 2422 3.069443 GGCAAGGGAAATTTCTGTTCACA 59.931 43.478 17.42 0.00 30.34 3.58
2190 2444 7.042051 TCACAGAAACTAGTAGTGTTTGCAATC 60.042 37.037 10.28 0.00 37.70 2.67
2196 2450 3.832527 AGTAGTGTTTGCAATCCCTGTT 58.167 40.909 0.00 0.00 0.00 3.16
2197 2451 3.821033 AGTAGTGTTTGCAATCCCTGTTC 59.179 43.478 0.00 0.00 0.00 3.18
2210 2464 2.234661 TCCCTGTTCATCTGTGCTAGTG 59.765 50.000 0.00 0.00 0.00 2.74
2216 2470 0.391661 CATCTGTGCTAGTGGCCGTT 60.392 55.000 0.00 0.00 40.92 4.44
2246 2500 3.844211 AGCCAACCATAGACCTGAAGTTA 59.156 43.478 0.00 0.00 0.00 2.24
2249 2503 5.126067 CCAACCATAGACCTGAAGTTATGG 58.874 45.833 7.61 7.61 41.07 2.74
2250 2504 4.423625 ACCATAGACCTGAAGTTATGGC 57.576 45.455 8.81 0.00 40.08 4.40
2258 2512 2.165030 CCTGAAGTTATGGCAGCCAAAG 59.835 50.000 20.84 7.44 36.95 2.77
2259 2513 3.084039 CTGAAGTTATGGCAGCCAAAGA 58.916 45.455 20.84 3.78 36.95 2.52
2260 2514 3.084039 TGAAGTTATGGCAGCCAAAGAG 58.916 45.455 20.84 0.00 36.95 2.85
2261 2515 1.467920 AGTTATGGCAGCCAAAGAGC 58.532 50.000 20.84 9.12 36.95 4.09
2262 2516 1.176527 GTTATGGCAGCCAAAGAGCA 58.823 50.000 20.84 0.00 36.95 4.26
2264 2518 1.466856 TATGGCAGCCAAAGAGCAAG 58.533 50.000 20.84 0.00 36.95 4.01
2265 2519 0.541296 ATGGCAGCCAAAGAGCAAGT 60.541 50.000 20.84 0.00 36.95 3.16
2267 2521 0.319297 GGCAGCCAAAGAGCAAGTTG 60.319 55.000 6.55 0.00 34.23 3.16
2268 2522 0.386838 GCAGCCAAAGAGCAAGTTGT 59.613 50.000 4.48 0.00 34.23 3.32
2269 2523 1.866880 GCAGCCAAAGAGCAAGTTGTG 60.867 52.381 4.48 0.00 34.23 3.33
2270 2524 1.035139 AGCCAAAGAGCAAGTTGTGG 58.965 50.000 4.48 4.96 34.23 4.17
2274 2547 2.301346 CAAAGAGCAAGTTGTGGGAGT 58.699 47.619 4.48 0.00 0.00 3.85
2276 2549 2.841442 AGAGCAAGTTGTGGGAGTAC 57.159 50.000 4.48 0.00 0.00 2.73
2277 2550 2.047061 AGAGCAAGTTGTGGGAGTACA 58.953 47.619 4.48 0.00 0.00 2.90
2298 2571 4.413520 ACATCCTACAAGTTGGCTATGGAT 59.586 41.667 7.96 9.14 33.85 3.41
2311 2599 6.950860 TGGCTATGGATAATATGTCTGGAA 57.049 37.500 0.00 0.00 0.00 3.53
2328 2616 9.696917 ATGTCTGGAAATTAGAAAATGTTCAAC 57.303 29.630 0.00 0.00 36.09 3.18
2329 2617 8.690884 TGTCTGGAAATTAGAAAATGTTCAACA 58.309 29.630 0.00 0.00 36.09 3.33
2330 2618 9.185192 GTCTGGAAATTAGAAAATGTTCAACAG 57.815 33.333 0.00 0.00 36.09 3.16
2339 2627 9.844790 TTAGAAAATGTTCAACAGAATATGCTG 57.155 29.630 9.36 9.36 37.78 4.41
2340 2628 8.114331 AGAAAATGTTCAACAGAATATGCTGA 57.886 30.769 18.17 0.00 36.48 4.26
2341 2629 8.746530 AGAAAATGTTCAACAGAATATGCTGAT 58.253 29.630 18.17 2.14 34.08 2.90
2343 2631 9.793252 AAAATGTTCAACAGAATATGCTGATAC 57.207 29.630 18.17 9.37 39.20 2.24
2344 2632 6.925610 TGTTCAACAGAATATGCTGATACC 57.074 37.500 18.17 2.05 39.20 2.73
2345 2633 6.413892 TGTTCAACAGAATATGCTGATACCA 58.586 36.000 18.17 4.52 39.20 3.25
2346 2634 6.539826 TGTTCAACAGAATATGCTGATACCAG 59.460 38.462 18.17 0.90 43.22 4.00
2347 2635 6.239217 TCAACAGAATATGCTGATACCAGT 57.761 37.500 18.17 0.00 42.35 4.00
2348 2636 6.051074 TCAACAGAATATGCTGATACCAGTG 58.949 40.000 18.17 3.99 42.35 3.66
2349 2637 5.876651 ACAGAATATGCTGATACCAGTGA 57.123 39.130 18.17 0.00 42.35 3.41
2350 2638 5.851720 ACAGAATATGCTGATACCAGTGAG 58.148 41.667 18.17 0.00 42.35 3.51
2351 2639 4.689812 CAGAATATGCTGATACCAGTGAGC 59.310 45.833 4.46 0.00 42.35 4.26
2352 2640 4.346127 AGAATATGCTGATACCAGTGAGCA 59.654 41.667 5.98 5.98 45.12 4.26
2353 2641 4.694760 ATATGCTGATACCAGTGAGCAA 57.305 40.909 7.46 0.00 44.27 3.91
2354 2642 2.391616 TGCTGATACCAGTGAGCAAG 57.608 50.000 1.21 0.00 42.35 4.01
2355 2643 1.065926 TGCTGATACCAGTGAGCAAGG 60.066 52.381 1.21 0.00 42.35 3.61
2356 2644 1.065854 GCTGATACCAGTGAGCAAGGT 60.066 52.381 0.00 0.00 42.35 3.50
2357 2645 2.168521 GCTGATACCAGTGAGCAAGGTA 59.831 50.000 0.00 5.79 42.35 3.08
2358 2646 3.369471 GCTGATACCAGTGAGCAAGGTAA 60.369 47.826 7.03 0.00 40.93 2.85
2359 2647 4.437239 CTGATACCAGTGAGCAAGGTAAG 58.563 47.826 7.03 0.00 40.93 2.34
2360 2648 4.093743 TGATACCAGTGAGCAAGGTAAGA 58.906 43.478 7.03 0.00 40.93 2.10
2361 2649 4.160439 TGATACCAGTGAGCAAGGTAAGAG 59.840 45.833 7.03 0.00 40.93 2.85
2362 2650 1.625818 ACCAGTGAGCAAGGTAAGAGG 59.374 52.381 0.00 0.00 32.92 3.69
2363 2651 1.902508 CCAGTGAGCAAGGTAAGAGGA 59.097 52.381 0.00 0.00 0.00 3.71
2364 2652 2.354203 CCAGTGAGCAAGGTAAGAGGAC 60.354 54.545 0.00 0.00 0.00 3.85
2365 2653 1.903183 AGTGAGCAAGGTAAGAGGACC 59.097 52.381 0.00 0.00 40.08 4.46
2366 2654 1.623811 GTGAGCAAGGTAAGAGGACCA 59.376 52.381 0.00 0.00 42.47 4.02
2367 2655 2.237392 GTGAGCAAGGTAAGAGGACCAT 59.763 50.000 0.00 0.00 42.47 3.55
2368 2656 3.451178 GTGAGCAAGGTAAGAGGACCATA 59.549 47.826 0.00 0.00 42.47 2.74
2380 2668 4.020543 AGAGGACCATACAGTCTCACTTC 58.979 47.826 0.00 0.00 36.95 3.01
2384 2672 3.764434 GACCATACAGTCTCACTTCTGGA 59.236 47.826 0.00 0.00 36.17 3.86
2478 2771 1.683365 TGGTAGGAGGGCCGTGTAC 60.683 63.158 0.65 4.28 39.96 2.90
2479 2772 2.779033 GGTAGGAGGGCCGTGTACG 61.779 68.421 0.65 0.00 39.96 3.67
2492 2785 3.658351 CGTGTACGGTGTACCTAGTAC 57.342 52.381 12.20 12.20 39.68 2.73
2493 2786 3.262420 CGTGTACGGTGTACCTAGTACT 58.738 50.000 17.04 0.00 39.87 2.73
2494 2787 3.062639 CGTGTACGGTGTACCTAGTACTG 59.937 52.174 5.39 5.76 39.87 2.74
2495 2788 3.009723 TGTACGGTGTACCTAGTACTGC 58.990 50.000 5.39 0.38 39.49 4.40
2496 2789 2.503895 ACGGTGTACCTAGTACTGCT 57.496 50.000 5.39 0.00 39.49 4.24
2497 2790 2.800250 ACGGTGTACCTAGTACTGCTT 58.200 47.619 5.39 0.00 39.49 3.91
2498 2791 3.160269 ACGGTGTACCTAGTACTGCTTT 58.840 45.455 5.39 0.00 39.49 3.51
2499 2792 4.335416 ACGGTGTACCTAGTACTGCTTTA 58.665 43.478 5.39 0.00 39.49 1.85
2500 2793 4.397417 ACGGTGTACCTAGTACTGCTTTAG 59.603 45.833 5.39 0.00 39.49 1.85
2501 2794 4.201990 CGGTGTACCTAGTACTGCTTTAGG 60.202 50.000 5.39 6.36 39.49 2.69
2502 2795 4.708909 GGTGTACCTAGTACTGCTTTAGGT 59.291 45.833 16.60 16.60 46.63 3.08
2503 2796 5.888161 GGTGTACCTAGTACTGCTTTAGGTA 59.112 44.000 14.85 14.85 44.01 3.08
2504 2797 6.039159 GGTGTACCTAGTACTGCTTTAGGTAG 59.961 46.154 18.01 0.02 45.74 3.18
2505 2798 6.039159 GTGTACCTAGTACTGCTTTAGGTAGG 59.961 46.154 18.01 10.45 45.74 3.18
2506 2799 5.204131 ACCTAGTACTGCTTTAGGTAGGT 57.796 43.478 11.82 7.33 44.01 3.08
2507 2800 4.954826 ACCTAGTACTGCTTTAGGTAGGTG 59.045 45.833 11.82 0.00 44.01 4.00
2508 2801 4.341520 CCTAGTACTGCTTTAGGTAGGTGG 59.658 50.000 5.39 0.00 31.34 4.61
2509 2802 2.500504 AGTACTGCTTTAGGTAGGTGGC 59.499 50.000 0.00 0.00 31.76 5.01
2510 2803 0.249398 ACTGCTTTAGGTAGGTGGCG 59.751 55.000 0.00 0.00 31.76 5.69
2511 2804 0.249398 CTGCTTTAGGTAGGTGGCGT 59.751 55.000 0.00 0.00 0.00 5.68
2512 2805 0.688487 TGCTTTAGGTAGGTGGCGTT 59.312 50.000 0.00 0.00 0.00 4.84
2513 2806 1.072648 TGCTTTAGGTAGGTGGCGTTT 59.927 47.619 0.00 0.00 0.00 3.60
2514 2807 2.302445 TGCTTTAGGTAGGTGGCGTTTA 59.698 45.455 0.00 0.00 0.00 2.01
2515 2808 3.054948 TGCTTTAGGTAGGTGGCGTTTAT 60.055 43.478 0.00 0.00 0.00 1.40
2516 2809 3.943381 GCTTTAGGTAGGTGGCGTTTATT 59.057 43.478 0.00 0.00 0.00 1.40
2517 2810 4.397103 GCTTTAGGTAGGTGGCGTTTATTT 59.603 41.667 0.00 0.00 0.00 1.40
2518 2811 5.448225 GCTTTAGGTAGGTGGCGTTTATTTC 60.448 44.000 0.00 0.00 0.00 2.17
2519 2812 3.994931 AGGTAGGTGGCGTTTATTTCT 57.005 42.857 0.00 0.00 0.00 2.52
2520 2813 6.543430 TTAGGTAGGTGGCGTTTATTTCTA 57.457 37.500 0.00 0.00 0.00 2.10
2521 2814 4.763073 AGGTAGGTGGCGTTTATTTCTAC 58.237 43.478 0.00 0.00 0.00 2.59
2522 2815 3.553105 GGTAGGTGGCGTTTATTTCTACG 59.447 47.826 0.00 0.00 40.55 3.51
2523 2816 3.598019 AGGTGGCGTTTATTTCTACGA 57.402 42.857 0.00 0.00 40.03 3.43
2524 2817 3.929094 AGGTGGCGTTTATTTCTACGAA 58.071 40.909 0.00 0.00 40.03 3.85
2525 2818 3.930848 AGGTGGCGTTTATTTCTACGAAG 59.069 43.478 0.00 0.00 40.03 3.79
2526 2819 3.484721 GGTGGCGTTTATTTCTACGAAGC 60.485 47.826 0.00 0.00 40.03 3.86
2527 2820 2.346244 TGGCGTTTATTTCTACGAAGCG 59.654 45.455 0.00 0.00 40.03 4.68
2528 2821 2.599973 GGCGTTTATTTCTACGAAGCGA 59.400 45.455 0.00 0.00 40.03 4.93
2529 2822 3.301643 GGCGTTTATTTCTACGAAGCGAG 60.302 47.826 0.00 0.00 40.03 5.03
2530 2823 3.545078 GCGTTTATTTCTACGAAGCGAGA 59.455 43.478 0.00 0.00 40.03 4.04
2531 2824 4.545893 GCGTTTATTTCTACGAAGCGAGAC 60.546 45.833 0.00 0.00 40.03 3.36
2532 2825 4.315556 CGTTTATTTCTACGAAGCGAGACG 60.316 45.833 0.00 0.00 40.03 4.18
2533 2826 2.190325 ATTTCTACGAAGCGAGACGG 57.810 50.000 0.00 0.00 0.00 4.79
2534 2827 0.877071 TTTCTACGAAGCGAGACGGT 59.123 50.000 0.00 0.00 40.00 4.83
2535 2828 0.167470 TTCTACGAAGCGAGACGGTG 59.833 55.000 0.00 0.00 37.73 4.94
2536 2829 1.868251 CTACGAAGCGAGACGGTGC 60.868 63.158 0.00 0.00 37.73 5.01
2537 2830 2.254703 CTACGAAGCGAGACGGTGCT 62.255 60.000 0.00 0.00 44.97 4.40
2538 2831 2.249557 TACGAAGCGAGACGGTGCTC 62.250 60.000 0.00 0.00 41.46 4.26
2539 2832 2.507324 GAAGCGAGACGGTGCTCC 60.507 66.667 0.00 0.00 41.46 4.70
2540 2833 3.282745 GAAGCGAGACGGTGCTCCA 62.283 63.158 5.52 0.00 41.46 3.86
2541 2834 2.564553 GAAGCGAGACGGTGCTCCAT 62.565 60.000 5.52 0.00 41.46 3.41
2542 2835 1.320344 AAGCGAGACGGTGCTCCATA 61.320 55.000 5.52 0.00 41.46 2.74
2543 2836 1.589196 GCGAGACGGTGCTCCATAC 60.589 63.158 5.52 0.00 0.00 2.39
2544 2837 1.298413 CGAGACGGTGCTCCATACG 60.298 63.158 5.52 1.45 0.00 3.06
2545 2838 1.589196 GAGACGGTGCTCCATACGC 60.589 63.158 5.52 0.00 0.00 4.42
2546 2839 2.585247 GACGGTGCTCCATACGCC 60.585 66.667 5.52 0.00 0.00 5.68
2547 2840 3.365291 GACGGTGCTCCATACGCCA 62.365 63.158 5.52 0.00 37.56 5.69
2548 2841 2.890474 CGGTGCTCCATACGCCAC 60.890 66.667 5.52 0.00 37.56 5.01
2549 2842 2.513897 GGTGCTCCATACGCCACC 60.514 66.667 0.00 0.00 37.64 4.61
2550 2843 2.890474 GTGCTCCATACGCCACCG 60.890 66.667 0.00 0.00 41.14 4.94
2562 2855 2.425592 CCACCGTTGAGGCAGTCA 59.574 61.111 0.00 0.00 46.52 3.41
2563 2856 1.669115 CCACCGTTGAGGCAGTCAG 60.669 63.158 0.00 0.00 46.52 3.51
2564 2857 1.367471 CACCGTTGAGGCAGTCAGA 59.633 57.895 0.00 0.00 46.52 3.27
2565 2858 0.668706 CACCGTTGAGGCAGTCAGAG 60.669 60.000 0.00 0.00 46.52 3.35
2566 2859 1.739562 CCGTTGAGGCAGTCAGAGC 60.740 63.158 0.00 0.00 36.21 4.09
2567 2860 1.291588 CGTTGAGGCAGTCAGAGCT 59.708 57.895 0.00 0.00 36.21 4.09
2568 2861 0.528017 CGTTGAGGCAGTCAGAGCTA 59.472 55.000 0.00 0.00 36.21 3.32
2569 2862 1.067565 CGTTGAGGCAGTCAGAGCTAA 60.068 52.381 0.00 0.00 36.21 3.09
2570 2863 2.615869 GTTGAGGCAGTCAGAGCTAAG 58.384 52.381 0.00 0.00 36.21 2.18
2571 2864 1.189752 TGAGGCAGTCAGAGCTAAGG 58.810 55.000 0.00 0.00 0.00 2.69
2572 2865 0.179086 GAGGCAGTCAGAGCTAAGGC 60.179 60.000 0.00 0.00 39.06 4.35
2573 2866 1.153269 GGCAGTCAGAGCTAAGGCC 60.153 63.158 0.00 0.00 39.73 5.19
2574 2867 1.621672 GGCAGTCAGAGCTAAGGCCT 61.622 60.000 0.00 0.00 39.73 5.19
2575 2868 0.461693 GCAGTCAGAGCTAAGGCCTG 60.462 60.000 5.69 0.00 39.73 4.85
2576 2869 0.901124 CAGTCAGAGCTAAGGCCTGT 59.099 55.000 5.69 0.00 39.73 4.00
2577 2870 1.277557 CAGTCAGAGCTAAGGCCTGTT 59.722 52.381 5.69 0.00 39.73 3.16
2578 2871 1.981495 AGTCAGAGCTAAGGCCTGTTT 59.019 47.619 5.69 0.00 39.73 2.83
2579 2872 2.079925 GTCAGAGCTAAGGCCTGTTTG 58.920 52.381 5.69 0.00 39.73 2.93
2580 2873 1.003580 TCAGAGCTAAGGCCTGTTTGG 59.996 52.381 5.69 0.00 39.73 3.28
2581 2874 1.068121 AGAGCTAAGGCCTGTTTGGT 58.932 50.000 5.69 1.99 39.73 3.67
2582 2875 1.425448 AGAGCTAAGGCCTGTTTGGTT 59.575 47.619 5.69 0.00 39.73 3.67
2583 2876 1.813178 GAGCTAAGGCCTGTTTGGTTC 59.187 52.381 5.69 0.00 39.73 3.62
2584 2877 0.888619 GCTAAGGCCTGTTTGGTTCC 59.111 55.000 5.69 0.00 38.35 3.62
2585 2878 1.547901 GCTAAGGCCTGTTTGGTTCCT 60.548 52.381 5.69 0.00 38.35 3.36
2586 2879 2.290705 GCTAAGGCCTGTTTGGTTCCTA 60.291 50.000 5.69 0.00 38.35 2.94
2587 2880 3.624959 GCTAAGGCCTGTTTGGTTCCTAT 60.625 47.826 5.69 0.00 38.35 2.57
2588 2881 2.514458 AGGCCTGTTTGGTTCCTATG 57.486 50.000 3.11 0.00 38.35 2.23
2589 2882 1.992557 AGGCCTGTTTGGTTCCTATGA 59.007 47.619 3.11 0.00 38.35 2.15
2590 2883 2.378547 AGGCCTGTTTGGTTCCTATGAA 59.621 45.455 3.11 0.00 38.35 2.57
2591 2884 3.011708 AGGCCTGTTTGGTTCCTATGAAT 59.988 43.478 3.11 0.00 38.35 2.57
2592 2885 3.769300 GGCCTGTTTGGTTCCTATGAATT 59.231 43.478 0.00 0.00 38.35 2.17
2593 2886 4.142160 GGCCTGTTTGGTTCCTATGAATTC 60.142 45.833 0.00 0.00 38.35 2.17
2594 2887 4.706962 GCCTGTTTGGTTCCTATGAATTCT 59.293 41.667 7.05 0.00 38.35 2.40
2595 2888 5.885912 GCCTGTTTGGTTCCTATGAATTCTA 59.114 40.000 7.05 0.00 38.35 2.10
2596 2889 6.547510 GCCTGTTTGGTTCCTATGAATTCTAT 59.452 38.462 7.05 1.68 38.35 1.98
2597 2890 7.719633 GCCTGTTTGGTTCCTATGAATTCTATA 59.280 37.037 7.05 2.75 38.35 1.31
2598 2891 9.277783 CCTGTTTGGTTCCTATGAATTCTATAG 57.722 37.037 7.05 11.27 31.98 1.31
2599 2892 9.277783 CTGTTTGGTTCCTATGAATTCTATAGG 57.722 37.037 24.06 24.06 45.58 2.57
2617 2910 9.877222 TTCTATAGGATAAGATGTGTGTAGGAA 57.123 33.333 0.00 0.00 0.00 3.36
2618 2911 9.877222 TCTATAGGATAAGATGTGTGTAGGAAA 57.123 33.333 0.00 0.00 0.00 3.13
2623 2916 9.178758 AGGATAAGATGTGTGTAGGAAAATTTC 57.821 33.333 0.00 0.00 0.00 2.17
2636 2929 5.392767 GGAAAATTTCCTTTGAGACCCTC 57.607 43.478 17.01 0.00 46.57 4.30
2637 2930 5.080337 GGAAAATTTCCTTTGAGACCCTCT 58.920 41.667 17.01 0.00 46.57 3.69
2638 2931 6.246163 GGAAAATTTCCTTTGAGACCCTCTA 58.754 40.000 17.01 0.00 46.57 2.43
2639 2932 6.375736 GGAAAATTTCCTTTGAGACCCTCTAG 59.624 42.308 17.01 0.00 46.57 2.43
2640 2933 6.455690 AAATTTCCTTTGAGACCCTCTAGT 57.544 37.500 0.00 0.00 0.00 2.57
2641 2934 6.455690 AATTTCCTTTGAGACCCTCTAGTT 57.544 37.500 0.00 0.00 0.00 2.24
2642 2935 5.906772 TTTCCTTTGAGACCCTCTAGTTT 57.093 39.130 0.00 0.00 0.00 2.66
2643 2936 4.891992 TCCTTTGAGACCCTCTAGTTTG 57.108 45.455 0.00 0.00 0.00 2.93
2644 2937 4.232091 TCCTTTGAGACCCTCTAGTTTGT 58.768 43.478 0.00 0.00 0.00 2.83
2645 2938 5.399991 TCCTTTGAGACCCTCTAGTTTGTA 58.600 41.667 0.00 0.00 0.00 2.41
2646 2939 5.480772 TCCTTTGAGACCCTCTAGTTTGTAG 59.519 44.000 0.00 0.00 0.00 2.74
2647 2940 5.480772 CCTTTGAGACCCTCTAGTTTGTAGA 59.519 44.000 0.00 0.00 0.00 2.59
2648 2941 6.014499 CCTTTGAGACCCTCTAGTTTGTAGAA 60.014 42.308 0.00 0.00 0.00 2.10
2649 2942 7.310734 CCTTTGAGACCCTCTAGTTTGTAGAAT 60.311 40.741 0.00 0.00 0.00 2.40
2650 2943 6.531503 TGAGACCCTCTAGTTTGTAGAATG 57.468 41.667 0.00 0.00 0.00 2.67
2651 2944 5.422331 TGAGACCCTCTAGTTTGTAGAATGG 59.578 44.000 0.00 0.00 0.00 3.16
2652 2945 5.590818 AGACCCTCTAGTTTGTAGAATGGA 58.409 41.667 0.00 0.00 0.00 3.41
2653 2946 6.206042 AGACCCTCTAGTTTGTAGAATGGAT 58.794 40.000 0.00 0.00 0.00 3.41
2654 2947 6.674419 AGACCCTCTAGTTTGTAGAATGGATT 59.326 38.462 0.00 0.00 0.00 3.01
2655 2948 6.890293 ACCCTCTAGTTTGTAGAATGGATTC 58.110 40.000 0.00 0.00 37.06 2.52
2656 2949 6.126739 ACCCTCTAGTTTGTAGAATGGATTCC 60.127 42.308 0.00 0.00 37.51 3.01
2657 2950 6.100424 CCCTCTAGTTTGTAGAATGGATTCCT 59.900 42.308 3.95 0.00 37.51 3.36
2658 2951 7.290248 CCCTCTAGTTTGTAGAATGGATTCCTA 59.710 40.741 3.95 0.00 37.51 2.94
2659 2952 8.875168 CCTCTAGTTTGTAGAATGGATTCCTAT 58.125 37.037 3.95 0.00 37.51 2.57
2662 2955 9.495572 CTAGTTTGTAGAATGGATTCCTATTCC 57.504 37.037 17.23 9.04 37.51 3.01
2663 2956 8.107196 AGTTTGTAGAATGGATTCCTATTCCT 57.893 34.615 17.23 11.11 37.51 3.36
2664 2957 9.225682 AGTTTGTAGAATGGATTCCTATTCCTA 57.774 33.333 17.23 10.50 37.51 2.94
2693 2986 8.980481 AGGATAGGAATAAATTCGTCACATTT 57.020 30.769 1.43 0.00 37.67 2.32
2694 2987 9.408648 AGGATAGGAATAAATTCGTCACATTTT 57.591 29.630 1.43 0.00 37.67 1.82
2721 3014 9.725019 AGAAAATTTTCTTTGAAACTCTTTGGT 57.275 25.926 24.62 0.31 44.70 3.67
2722 3015 9.973246 GAAAATTTTCTTTGAAACTCTTTGGTC 57.027 29.630 21.21 0.00 34.41 4.02
2723 3016 7.755582 AATTTTCTTTGAAACTCTTTGGTCG 57.244 32.000 0.00 0.00 0.00 4.79
2724 3017 4.893424 TTCTTTGAAACTCTTTGGTCGG 57.107 40.909 0.00 0.00 0.00 4.79
2725 3018 3.881220 TCTTTGAAACTCTTTGGTCGGT 58.119 40.909 0.00 0.00 0.00 4.69
2726 3019 5.026038 TCTTTGAAACTCTTTGGTCGGTA 57.974 39.130 0.00 0.00 0.00 4.02
2727 3020 5.054477 TCTTTGAAACTCTTTGGTCGGTAG 58.946 41.667 0.00 0.00 0.00 3.18
2728 3021 3.396260 TGAAACTCTTTGGTCGGTAGG 57.604 47.619 0.00 0.00 0.00 3.18
2729 3022 2.967201 TGAAACTCTTTGGTCGGTAGGA 59.033 45.455 0.00 0.00 0.00 2.94
2730 3023 3.388676 TGAAACTCTTTGGTCGGTAGGAA 59.611 43.478 0.00 0.00 0.00 3.36
2731 3024 4.041198 TGAAACTCTTTGGTCGGTAGGAAT 59.959 41.667 0.00 0.00 0.00 3.01
2732 3025 5.246656 TGAAACTCTTTGGTCGGTAGGAATA 59.753 40.000 0.00 0.00 0.00 1.75
2733 3026 5.340439 AACTCTTTGGTCGGTAGGAATAG 57.660 43.478 0.00 0.00 0.00 1.73
2734 3027 4.607239 ACTCTTTGGTCGGTAGGAATAGA 58.393 43.478 0.00 0.00 0.00 1.98
2735 3028 5.209659 ACTCTTTGGTCGGTAGGAATAGAT 58.790 41.667 0.00 0.00 0.00 1.98
2736 3029 5.661759 ACTCTTTGGTCGGTAGGAATAGATT 59.338 40.000 0.00 0.00 0.00 2.40
2737 3030 6.156429 ACTCTTTGGTCGGTAGGAATAGATTT 59.844 38.462 0.00 0.00 0.00 2.17
2738 3031 6.579865 TCTTTGGTCGGTAGGAATAGATTTC 58.420 40.000 0.00 0.00 0.00 2.17
2739 3032 6.383147 TCTTTGGTCGGTAGGAATAGATTTCT 59.617 38.462 0.00 0.00 0.00 2.52
2740 3033 7.562454 TCTTTGGTCGGTAGGAATAGATTTCTA 59.438 37.037 0.00 0.00 0.00 2.10
2741 3034 7.850935 TTGGTCGGTAGGAATAGATTTCTAT 57.149 36.000 0.00 0.00 40.68 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.994235 AAGACGCGAAATCATATATCGTC 57.006 39.130 15.93 11.03 43.30 4.20
1 2 5.512082 GCTAAGACGCGAAATCATATATCGT 59.488 40.000 15.93 0.00 38.75 3.73
15 16 0.721718 CTTTTGAGGGCTAAGACGCG 59.278 55.000 3.53 3.53 0.00 6.01
27 28 3.944015 AGATCTGCGGGAATTCTTTTGAG 59.056 43.478 5.23 0.00 0.00 3.02
39 40 1.932604 GCGAATCTACAGATCTGCGGG 60.933 57.143 22.83 12.46 32.75 6.13
65 66 4.877378 ACGAACTTGGGTACAACTATGA 57.123 40.909 0.00 0.00 32.14 2.15
113 114 2.202236 GAGGGGCCAGCAGATGAACA 62.202 60.000 4.39 0.00 0.00 3.18
117 121 0.396695 ATTTGAGGGGCCAGCAGATG 60.397 55.000 4.39 0.00 0.00 2.90
138 142 7.058023 ACCACTGTAACACTATGAAACTACA 57.942 36.000 0.00 0.00 0.00 2.74
149 153 6.877322 AGCGAAATTTATACCACTGTAACACT 59.123 34.615 0.00 0.00 0.00 3.55
157 162 5.416947 AGTCGAAGCGAAATTTATACCACT 58.583 37.500 0.00 0.00 37.72 4.00
176 181 2.058798 AGCACACACGTCAATAAGTCG 58.941 47.619 0.00 0.00 34.89 4.18
179 184 7.700322 AAGATATAGCACACACGTCAATAAG 57.300 36.000 0.00 0.00 0.00 1.73
186 191 6.106003 TCATCAAAAGATATAGCACACACGT 58.894 36.000 0.00 0.00 0.00 4.49
197 202 9.436957 ACGTTAGTTCAACTCATCAAAAGATAT 57.563 29.630 0.00 0.00 34.77 1.63
208 213 5.013568 TCTCCAAACGTTAGTTCAACTCA 57.986 39.130 0.00 0.00 40.18 3.41
219 224 4.630069 CAGATACCGAATTCTCCAAACGTT 59.370 41.667 3.52 0.00 0.00 3.99
220 225 4.181578 CAGATACCGAATTCTCCAAACGT 58.818 43.478 3.52 0.00 0.00 3.99
221 226 3.001330 GCAGATACCGAATTCTCCAAACG 59.999 47.826 3.52 0.00 0.00 3.60
271 276 2.230992 TCATGCCAATTCTTTCCAACCG 59.769 45.455 0.00 0.00 0.00 4.44
387 400 2.675348 GACTGCAGGTTGCTCTCAATAC 59.325 50.000 19.93 0.00 45.31 1.89
453 466 7.147828 CCAATTGACTTCCACTATCAGAGTAGA 60.148 40.741 7.12 0.00 35.64 2.59
473 486 6.593268 TCCATATATCAATGCACCCAATTG 57.407 37.500 0.00 0.00 0.00 2.32
491 504 2.092484 TGGCTATGCAACTGCTTCCATA 60.092 45.455 2.95 0.00 42.66 2.74
622 656 8.484641 ACATCAACTTCACATAGTTATCTGTG 57.515 34.615 0.00 0.00 43.24 3.66
623 657 7.766278 GGACATCAACTTCACATAGTTATCTGT 59.234 37.037 0.00 0.00 36.24 3.41
626 660 6.978659 TCGGACATCAACTTCACATAGTTATC 59.021 38.462 0.00 0.00 36.24 1.75
719 753 1.797025 GGCTACCATGATCGCCTAAC 58.203 55.000 0.00 0.00 39.42 2.34
1023 1246 1.263356 TTCCTCCAGTGGACTTACGG 58.737 55.000 8.12 7.98 35.58 4.02
1050 1273 1.451028 GGTGGCTAGCTGCTTCCTG 60.451 63.158 15.72 0.00 42.39 3.86
1141 1367 8.877864 ATGAAGGTTGAGGTTCAAATTATACA 57.122 30.769 0.00 0.00 38.22 2.29
1169 1395 7.725844 TCAGTAAGATATCTGGTCATAAGCTGA 59.274 37.037 5.86 7.04 35.67 4.26
1225 1451 3.571571 CAAAACAGAGCACATGGTCATG 58.428 45.455 13.20 9.19 44.42 3.07
1365 1594 9.757859 GAAAACAAAACCATATGCAATAACATG 57.242 29.630 0.00 0.00 29.06 3.21
1366 1595 9.499479 TGAAAACAAAACCATATGCAATAACAT 57.501 25.926 0.00 0.00 29.06 2.71
1379 1608 9.883142 ATTTGAGAATACTTGAAAACAAAACCA 57.117 25.926 0.00 0.00 31.61 3.67
1551 1781 4.402155 AGAGCTGACATAACAGGAGAAGAG 59.598 45.833 0.00 0.00 38.22 2.85
1553 1783 4.734398 AGAGCTGACATAACAGGAGAAG 57.266 45.455 0.00 0.00 38.22 2.85
1555 1785 7.725844 TGATATAAGAGCTGACATAACAGGAGA 59.274 37.037 0.00 0.00 38.22 3.71
1579 1811 5.106712 CGGTGCTTTTAGCTTACTTGATTGA 60.107 40.000 0.00 0.00 42.97 2.57
1580 1812 5.088739 CGGTGCTTTTAGCTTACTTGATTG 58.911 41.667 0.00 0.00 42.97 2.67
1591 1829 1.524008 AACAGGGCGGTGCTTTTAGC 61.524 55.000 0.00 0.00 42.82 3.09
1800 2040 2.337532 CACAGGCAAGGCAAGCAC 59.662 61.111 3.65 0.00 0.00 4.40
1801 2041 2.913578 CCACAGGCAAGGCAAGCA 60.914 61.111 3.65 0.00 0.00 3.91
1802 2042 3.688159 CCCACAGGCAAGGCAAGC 61.688 66.667 0.00 0.00 0.00 4.01
1803 2043 0.901580 ATTCCCACAGGCAAGGCAAG 60.902 55.000 0.00 0.00 0.00 4.01
1804 2044 0.899717 GATTCCCACAGGCAAGGCAA 60.900 55.000 0.00 0.00 0.00 4.52
1808 2048 1.372087 GAGCGATTCCCACAGGCAAG 61.372 60.000 0.00 0.00 0.00 4.01
1823 2063 2.513204 CAGATGCCCACCAGAGCG 60.513 66.667 0.00 0.00 0.00 5.03
1908 2148 1.467713 GGCACAGAGTACGCTACTGAC 60.468 57.143 15.22 6.51 39.59 3.51
1910 2150 0.526211 TGGCACAGAGTACGCTACTG 59.474 55.000 0.00 5.01 39.59 2.74
1911 2151 2.957060 TGGCACAGAGTACGCTACT 58.043 52.632 0.00 0.00 42.86 2.57
2085 2338 3.130869 TGCATCCCAATTCATACTTGCAC 59.869 43.478 0.00 0.00 34.24 4.57
2110 2363 5.661056 ATAACAGTTCAGCTACTAGCACA 57.339 39.130 10.73 0.00 45.56 4.57
2111 2364 7.259161 ACTAATAACAGTTCAGCTACTAGCAC 58.741 38.462 10.73 0.30 45.56 4.40
2131 2385 3.136626 CCCTTGCCAGCTACCTAACTAAT 59.863 47.826 0.00 0.00 0.00 1.73
2142 2396 1.897802 CAGAAATTTCCCTTGCCAGCT 59.102 47.619 14.61 0.00 0.00 4.24
2160 2414 7.621991 CAAACACTACTAGTTTCTGTGAACAG 58.378 38.462 18.26 3.98 45.08 3.16
2168 2422 5.705905 GGGATTGCAAACACTACTAGTTTCT 59.294 40.000 1.71 0.00 37.10 2.52
2171 2425 5.003804 CAGGGATTGCAAACACTACTAGTT 58.996 41.667 11.54 0.00 0.00 2.24
2172 2426 4.041691 ACAGGGATTGCAAACACTACTAGT 59.958 41.667 11.54 2.55 0.00 2.57
2173 2427 4.579869 ACAGGGATTGCAAACACTACTAG 58.420 43.478 11.54 1.90 0.00 2.57
2174 2428 4.634012 ACAGGGATTGCAAACACTACTA 57.366 40.909 11.54 0.00 0.00 1.82
2175 2429 3.508845 ACAGGGATTGCAAACACTACT 57.491 42.857 11.54 0.00 0.00 2.57
2176 2430 3.568007 TGAACAGGGATTGCAAACACTAC 59.432 43.478 11.54 7.03 0.00 2.73
2190 2444 2.625737 CACTAGCACAGATGAACAGGG 58.374 52.381 0.00 0.00 0.00 4.45
2196 2450 1.257750 ACGGCCACTAGCACAGATGA 61.258 55.000 2.24 0.00 46.50 2.92
2197 2451 0.391661 AACGGCCACTAGCACAGATG 60.392 55.000 2.24 0.00 46.50 2.90
2210 2464 1.862201 GTTGGCTAAACAAAAACGGCC 59.138 47.619 0.00 0.00 38.75 6.13
2216 2470 5.242838 CAGGTCTATGGTTGGCTAAACAAAA 59.757 40.000 4.06 0.00 40.86 2.44
2246 2500 0.541296 ACTTGCTCTTTGGCTGCCAT 60.541 50.000 24.03 0.16 31.53 4.40
2249 2503 0.386838 ACAACTTGCTCTTTGGCTGC 59.613 50.000 0.00 0.00 0.00 5.25
2250 2504 1.269413 CCACAACTTGCTCTTTGGCTG 60.269 52.381 0.00 0.00 0.00 4.85
2258 2512 2.543777 TGTACTCCCACAACTTGCTC 57.456 50.000 0.00 0.00 0.00 4.26
2259 2513 2.290323 GGATGTACTCCCACAACTTGCT 60.290 50.000 0.00 0.00 38.19 3.91
2260 2514 2.084546 GGATGTACTCCCACAACTTGC 58.915 52.381 0.00 0.00 38.19 4.01
2261 2515 3.703001 AGGATGTACTCCCACAACTTG 57.297 47.619 7.50 0.00 46.27 3.16
2262 2516 4.164981 TGTAGGATGTACTCCCACAACTT 58.835 43.478 9.12 0.00 41.91 2.66
2264 2518 4.020485 ACTTGTAGGATGTACTCCCACAAC 60.020 45.833 15.78 8.30 45.02 3.32
2267 2521 4.504858 CAACTTGTAGGATGTACTCCCAC 58.495 47.826 7.50 5.67 46.27 4.61
2268 2522 3.517901 CCAACTTGTAGGATGTACTCCCA 59.482 47.826 7.50 0.00 46.27 4.37
2269 2523 3.681874 GCCAACTTGTAGGATGTACTCCC 60.682 52.174 7.50 2.60 46.27 4.30
2270 2524 3.197983 AGCCAACTTGTAGGATGTACTCC 59.802 47.826 0.00 0.00 45.33 3.85
2274 2547 4.966168 TCCATAGCCAACTTGTAGGATGTA 59.034 41.667 0.00 0.00 0.00 2.29
2276 2549 4.422073 TCCATAGCCAACTTGTAGGATG 57.578 45.455 0.00 0.00 0.00 3.51
2277 2550 6.763715 TTATCCATAGCCAACTTGTAGGAT 57.236 37.500 0.00 0.00 38.17 3.24
2282 2555 7.663081 CAGACATATTATCCATAGCCAACTTGT 59.337 37.037 0.00 0.00 0.00 3.16
2289 2562 8.814038 AATTTCCAGACATATTATCCATAGCC 57.186 34.615 0.00 0.00 0.00 3.93
2320 2608 7.056006 TGGTATCAGCATATTCTGTTGAACAT 58.944 34.615 0.00 0.00 46.44 2.71
2327 2615 5.741383 GCTCACTGGTATCAGCATATTCTGT 60.741 44.000 1.90 0.00 44.59 3.41
2328 2616 4.689812 GCTCACTGGTATCAGCATATTCTG 59.310 45.833 1.90 0.00 44.59 3.02
2329 2617 4.346127 TGCTCACTGGTATCAGCATATTCT 59.654 41.667 1.90 0.00 44.59 2.40
2330 2618 4.635223 TGCTCACTGGTATCAGCATATTC 58.365 43.478 1.90 0.00 44.59 1.75
2334 2622 2.421107 CCTTGCTCACTGGTATCAGCAT 60.421 50.000 1.90 0.00 44.59 3.79
2335 2623 1.065926 CCTTGCTCACTGGTATCAGCA 60.066 52.381 1.90 0.00 44.59 4.41
2336 2624 1.065854 ACCTTGCTCACTGGTATCAGC 60.066 52.381 1.90 0.00 44.59 4.26
2337 2625 4.160439 TCTTACCTTGCTCACTGGTATCAG 59.840 45.833 0.04 0.04 46.10 2.90
2338 2626 4.093743 TCTTACCTTGCTCACTGGTATCA 58.906 43.478 0.00 0.00 36.38 2.15
2339 2627 4.442192 CCTCTTACCTTGCTCACTGGTATC 60.442 50.000 0.00 0.00 36.38 2.24
2340 2628 3.452627 CCTCTTACCTTGCTCACTGGTAT 59.547 47.826 0.00 0.00 36.38 2.73
2341 2629 2.832129 CCTCTTACCTTGCTCACTGGTA 59.168 50.000 0.00 0.00 35.48 3.25
2342 2630 1.625818 CCTCTTACCTTGCTCACTGGT 59.374 52.381 0.00 0.00 37.83 4.00
2343 2631 1.902508 TCCTCTTACCTTGCTCACTGG 59.097 52.381 0.00 0.00 0.00 4.00
2344 2632 2.354203 GGTCCTCTTACCTTGCTCACTG 60.354 54.545 0.00 0.00 36.53 3.66
2345 2633 1.903183 GGTCCTCTTACCTTGCTCACT 59.097 52.381 0.00 0.00 36.53 3.41
2346 2634 1.623811 TGGTCCTCTTACCTTGCTCAC 59.376 52.381 0.00 0.00 40.44 3.51
2347 2635 2.024176 TGGTCCTCTTACCTTGCTCA 57.976 50.000 0.00 0.00 40.44 4.26
2348 2636 3.451178 TGTATGGTCCTCTTACCTTGCTC 59.549 47.826 0.00 0.00 40.44 4.26
2349 2637 3.450904 TGTATGGTCCTCTTACCTTGCT 58.549 45.455 0.00 0.00 40.44 3.91
2350 2638 3.197983 ACTGTATGGTCCTCTTACCTTGC 59.802 47.826 0.00 0.00 40.44 4.01
2351 2639 4.712337 AGACTGTATGGTCCTCTTACCTTG 59.288 45.833 0.00 0.00 40.44 3.61
2352 2640 4.949121 AGACTGTATGGTCCTCTTACCTT 58.051 43.478 0.00 0.00 40.44 3.50
2353 2641 4.017407 TGAGACTGTATGGTCCTCTTACCT 60.017 45.833 0.00 0.00 40.44 3.08
2354 2642 4.098196 GTGAGACTGTATGGTCCTCTTACC 59.902 50.000 0.00 0.00 40.19 2.85
2355 2643 4.951094 AGTGAGACTGTATGGTCCTCTTAC 59.049 45.833 0.00 0.00 36.95 2.34
2356 2644 5.194473 AGTGAGACTGTATGGTCCTCTTA 57.806 43.478 0.00 0.00 36.95 2.10
2357 2645 4.054359 AGTGAGACTGTATGGTCCTCTT 57.946 45.455 0.00 0.00 36.95 2.85
2358 2646 3.748645 AGTGAGACTGTATGGTCCTCT 57.251 47.619 0.00 0.00 36.95 3.69
2359 2647 4.020543 AGAAGTGAGACTGTATGGTCCTC 58.979 47.826 0.00 0.00 36.95 3.71
2360 2648 3.766591 CAGAAGTGAGACTGTATGGTCCT 59.233 47.826 0.00 0.00 36.95 3.85
2361 2649 3.118956 CCAGAAGTGAGACTGTATGGTCC 60.119 52.174 0.00 0.00 36.95 4.46
2362 2650 3.764434 TCCAGAAGTGAGACTGTATGGTC 59.236 47.826 0.00 0.00 36.56 4.02
2363 2651 3.766591 CTCCAGAAGTGAGACTGTATGGT 59.233 47.826 0.00 0.00 32.93 3.55
2364 2652 3.766591 ACTCCAGAAGTGAGACTGTATGG 59.233 47.826 0.00 0.00 36.65 2.74
2380 2668 1.944430 GCCTCCGTTAAACCACTCCAG 60.944 57.143 0.00 0.00 0.00 3.86
2384 2672 0.475044 TTGGCCTCCGTTAAACCACT 59.525 50.000 3.32 0.00 0.00 4.00
2449 2742 1.295020 CTCCTACCACCATTTCCCCA 58.705 55.000 0.00 0.00 0.00 4.96
2453 2746 0.106669 GGCCCTCCTACCACCATTTC 60.107 60.000 0.00 0.00 0.00 2.17
2454 2747 1.921869 CGGCCCTCCTACCACCATTT 61.922 60.000 0.00 0.00 0.00 2.32
2459 2752 1.683365 TACACGGCCCTCCTACCAC 60.683 63.158 0.00 0.00 0.00 4.16
2478 2771 3.863142 AAAGCAGTACTAGGTACACCG 57.137 47.619 9.94 0.72 41.03 4.94
2479 2772 4.708909 ACCTAAAGCAGTACTAGGTACACC 59.291 45.833 11.82 0.00 42.92 4.16
2480 2773 5.911378 ACCTAAAGCAGTACTAGGTACAC 57.089 43.478 11.82 2.69 42.92 2.90
2481 2774 6.125029 CCTACCTAAAGCAGTACTAGGTACA 58.875 44.000 14.85 1.93 42.92 2.90
2482 2775 6.039159 CACCTACCTAAAGCAGTACTAGGTAC 59.961 46.154 14.85 0.12 42.92 3.34
2483 2776 6.125029 CACCTACCTAAAGCAGTACTAGGTA 58.875 44.000 16.98 16.98 42.92 3.08
2484 2777 4.954826 CACCTACCTAAAGCAGTACTAGGT 59.045 45.833 16.60 16.60 45.81 3.08
2485 2778 4.341520 CCACCTACCTAAAGCAGTACTAGG 59.658 50.000 7.04 7.04 38.56 3.02
2486 2779 4.202131 GCCACCTACCTAAAGCAGTACTAG 60.202 50.000 0.00 0.00 0.00 2.57
2487 2780 3.703052 GCCACCTACCTAAAGCAGTACTA 59.297 47.826 0.00 0.00 0.00 1.82
2488 2781 2.500504 GCCACCTACCTAAAGCAGTACT 59.499 50.000 0.00 0.00 0.00 2.73
2489 2782 2.737679 CGCCACCTACCTAAAGCAGTAC 60.738 54.545 0.00 0.00 0.00 2.73
2490 2783 1.479323 CGCCACCTACCTAAAGCAGTA 59.521 52.381 0.00 0.00 0.00 2.74
2491 2784 0.249398 CGCCACCTACCTAAAGCAGT 59.751 55.000 0.00 0.00 0.00 4.40
2492 2785 0.249398 ACGCCACCTACCTAAAGCAG 59.751 55.000 0.00 0.00 0.00 4.24
2493 2786 0.688487 AACGCCACCTACCTAAAGCA 59.312 50.000 0.00 0.00 0.00 3.91
2494 2787 1.817357 AAACGCCACCTACCTAAAGC 58.183 50.000 0.00 0.00 0.00 3.51
2495 2788 5.878669 AGAAATAAACGCCACCTACCTAAAG 59.121 40.000 0.00 0.00 0.00 1.85
2496 2789 5.807909 AGAAATAAACGCCACCTACCTAAA 58.192 37.500 0.00 0.00 0.00 1.85
2497 2790 5.425196 AGAAATAAACGCCACCTACCTAA 57.575 39.130 0.00 0.00 0.00 2.69
2498 2791 5.450412 CGTAGAAATAAACGCCACCTACCTA 60.450 44.000 0.00 0.00 0.00 3.08
2499 2792 3.994931 AGAAATAAACGCCACCTACCT 57.005 42.857 0.00 0.00 0.00 3.08
2500 2793 3.553105 CGTAGAAATAAACGCCACCTACC 59.447 47.826 0.00 0.00 0.00 3.18
2501 2794 4.423732 TCGTAGAAATAAACGCCACCTAC 58.576 43.478 0.00 0.00 0.00 3.18
2502 2795 4.717233 TCGTAGAAATAAACGCCACCTA 57.283 40.909 0.00 0.00 0.00 3.08
2503 2796 3.598019 TCGTAGAAATAAACGCCACCT 57.402 42.857 0.00 0.00 0.00 4.00
2504 2797 3.484721 GCTTCGTAGAAATAAACGCCACC 60.485 47.826 0.00 0.00 45.90 4.61
2505 2798 3.667050 GCTTCGTAGAAATAAACGCCAC 58.333 45.455 0.00 0.00 45.90 5.01
2506 2799 2.346244 CGCTTCGTAGAAATAAACGCCA 59.654 45.455 0.00 0.00 45.90 5.69
2507 2800 2.599973 TCGCTTCGTAGAAATAAACGCC 59.400 45.455 0.00 0.00 45.90 5.68
2508 2801 3.545078 TCTCGCTTCGTAGAAATAAACGC 59.455 43.478 0.00 0.00 45.90 4.84
2509 2802 4.315556 CGTCTCGCTTCGTAGAAATAAACG 60.316 45.833 0.00 0.00 45.90 3.60
2510 2803 4.027864 CCGTCTCGCTTCGTAGAAATAAAC 60.028 45.833 0.00 0.00 45.90 2.01
2511 2804 4.100529 CCGTCTCGCTTCGTAGAAATAAA 58.899 43.478 0.00 0.00 45.90 1.40
2512 2805 3.127548 ACCGTCTCGCTTCGTAGAAATAA 59.872 43.478 0.00 0.00 45.90 1.40
2513 2806 2.679837 ACCGTCTCGCTTCGTAGAAATA 59.320 45.455 0.00 0.00 45.90 1.40
2514 2807 1.471684 ACCGTCTCGCTTCGTAGAAAT 59.528 47.619 0.00 0.00 45.90 2.17
2515 2808 0.877071 ACCGTCTCGCTTCGTAGAAA 59.123 50.000 0.00 0.00 45.90 2.52
2516 2809 0.167470 CACCGTCTCGCTTCGTAGAA 59.833 55.000 0.00 0.00 45.90 2.10
2517 2810 1.792301 CACCGTCTCGCTTCGTAGA 59.208 57.895 0.00 0.00 0.00 2.59
2518 2811 1.868251 GCACCGTCTCGCTTCGTAG 60.868 63.158 0.00 0.00 0.00 3.51
2519 2812 2.177531 GCACCGTCTCGCTTCGTA 59.822 61.111 0.00 0.00 0.00 3.43
2520 2813 3.612371 GAGCACCGTCTCGCTTCGT 62.612 63.158 0.00 0.00 38.99 3.85
2521 2814 2.876645 GAGCACCGTCTCGCTTCG 60.877 66.667 0.00 0.00 38.99 3.79
2522 2815 2.507324 GGAGCACCGTCTCGCTTC 60.507 66.667 0.00 0.00 38.99 3.86
2523 2816 1.320344 TATGGAGCACCGTCTCGCTT 61.320 55.000 0.00 0.00 38.99 4.68
2524 2817 1.753078 TATGGAGCACCGTCTCGCT 60.753 57.895 0.00 0.00 42.42 4.93
2525 2818 1.589196 GTATGGAGCACCGTCTCGC 60.589 63.158 0.00 0.00 39.42 5.03
2526 2819 1.298413 CGTATGGAGCACCGTCTCG 60.298 63.158 0.00 2.00 39.42 4.04
2527 2820 1.589196 GCGTATGGAGCACCGTCTC 60.589 63.158 0.00 0.00 39.42 3.36
2528 2821 2.494918 GCGTATGGAGCACCGTCT 59.505 61.111 0.00 0.00 39.42 4.18
2529 2822 2.585247 GGCGTATGGAGCACCGTC 60.585 66.667 0.00 0.00 39.42 4.79
2530 2823 3.387091 TGGCGTATGGAGCACCGT 61.387 61.111 0.00 0.00 39.42 4.83
2531 2824 2.890474 GTGGCGTATGGAGCACCG 60.890 66.667 0.00 0.00 39.42 4.94
2532 2825 2.513897 GGTGGCGTATGGAGCACC 60.514 66.667 0.00 0.00 36.08 5.01
2533 2826 2.890474 CGGTGGCGTATGGAGCAC 60.890 66.667 0.00 0.00 36.08 4.40
2534 2827 2.949909 AACGGTGGCGTATGGAGCA 61.950 57.895 0.00 0.00 36.08 4.26
2535 2828 2.125269 AACGGTGGCGTATGGAGC 60.125 61.111 0.00 0.00 0.00 4.70
2536 2829 0.806102 CTCAACGGTGGCGTATGGAG 60.806 60.000 0.00 0.00 0.00 3.86
2537 2830 1.216977 CTCAACGGTGGCGTATGGA 59.783 57.895 0.00 0.00 0.00 3.41
2538 2831 1.813753 CCTCAACGGTGGCGTATGG 60.814 63.158 0.00 0.00 0.00 2.74
2539 2832 2.461110 GCCTCAACGGTGGCGTATG 61.461 63.158 0.00 0.00 43.12 2.39
2540 2833 2.125269 GCCTCAACGGTGGCGTAT 60.125 61.111 0.00 0.00 43.12 3.06
2545 2838 1.669115 CTGACTGCCTCAACGGTGG 60.669 63.158 0.00 0.00 34.25 4.61
2546 2839 0.668706 CTCTGACTGCCTCAACGGTG 60.669 60.000 0.00 0.00 34.25 4.94
2547 2840 1.668294 CTCTGACTGCCTCAACGGT 59.332 57.895 0.00 0.00 34.25 4.83
2548 2841 1.739562 GCTCTGACTGCCTCAACGG 60.740 63.158 0.00 0.00 0.00 4.44
2549 2842 0.528017 TAGCTCTGACTGCCTCAACG 59.472 55.000 0.00 0.00 0.00 4.10
2550 2843 2.615869 CTTAGCTCTGACTGCCTCAAC 58.384 52.381 0.00 0.00 0.00 3.18
2551 2844 1.552337 CCTTAGCTCTGACTGCCTCAA 59.448 52.381 0.00 0.00 0.00 3.02
2552 2845 1.189752 CCTTAGCTCTGACTGCCTCA 58.810 55.000 0.00 0.00 0.00 3.86
2553 2846 0.179086 GCCTTAGCTCTGACTGCCTC 60.179 60.000 0.00 0.00 35.50 4.70
2554 2847 1.621672 GGCCTTAGCTCTGACTGCCT 61.622 60.000 0.00 0.00 39.73 4.75
2555 2848 1.153269 GGCCTTAGCTCTGACTGCC 60.153 63.158 0.00 0.00 39.73 4.85
2556 2849 0.461693 CAGGCCTTAGCTCTGACTGC 60.462 60.000 0.00 0.00 38.72 4.40
2557 2850 0.901124 ACAGGCCTTAGCTCTGACTG 59.099 55.000 0.00 10.49 38.72 3.51
2558 2851 1.650528 AACAGGCCTTAGCTCTGACT 58.349 50.000 0.00 0.00 38.72 3.41
2559 2852 2.079925 CAAACAGGCCTTAGCTCTGAC 58.920 52.381 0.00 0.00 38.72 3.51
2560 2853 1.003580 CCAAACAGGCCTTAGCTCTGA 59.996 52.381 0.00 0.00 38.72 3.27
2561 2854 1.271597 ACCAAACAGGCCTTAGCTCTG 60.272 52.381 0.00 0.00 43.14 3.35
2562 2855 1.068121 ACCAAACAGGCCTTAGCTCT 58.932 50.000 0.00 0.00 43.14 4.09
2563 2856 1.813178 GAACCAAACAGGCCTTAGCTC 59.187 52.381 0.00 0.00 43.14 4.09
2564 2857 1.547901 GGAACCAAACAGGCCTTAGCT 60.548 52.381 0.00 0.00 43.14 3.32
2565 2858 0.888619 GGAACCAAACAGGCCTTAGC 59.111 55.000 0.00 0.00 43.14 3.09
2566 2859 2.586648 AGGAACCAAACAGGCCTTAG 57.413 50.000 0.00 0.00 43.14 2.18
2567 2860 3.589735 TCATAGGAACCAAACAGGCCTTA 59.410 43.478 0.00 0.00 43.14 2.69
2568 2861 2.378547 TCATAGGAACCAAACAGGCCTT 59.621 45.455 0.00 0.00 43.14 4.35
2569 2862 1.992557 TCATAGGAACCAAACAGGCCT 59.007 47.619 0.00 0.00 43.14 5.19
2570 2863 2.507407 TCATAGGAACCAAACAGGCC 57.493 50.000 0.00 0.00 43.14 5.19
2571 2864 4.706962 AGAATTCATAGGAACCAAACAGGC 59.293 41.667 8.44 0.00 43.14 4.85
2572 2865 9.277783 CTATAGAATTCATAGGAACCAAACAGG 57.722 37.037 8.44 0.00 45.67 4.00
2573 2866 9.277783 CCTATAGAATTCATAGGAACCAAACAG 57.722 37.037 24.95 6.90 45.44 3.16
2591 2884 9.877222 TTCCTACACACATCTTATCCTATAGAA 57.123 33.333 0.00 0.00 0.00 2.10
2592 2885 9.877222 TTTCCTACACACATCTTATCCTATAGA 57.123 33.333 0.00 0.00 0.00 1.98
2597 2890 9.178758 GAAATTTTCCTACACACATCTTATCCT 57.821 33.333 0.00 0.00 0.00 3.24
2598 2891 8.406297 GGAAATTTTCCTACACACATCTTATCC 58.594 37.037 19.01 0.00 46.57 2.59
2611 2904 7.964125 AGAGGGTCTCAAAGGAAATTTTCCTAC 60.964 40.741 26.94 20.54 45.43 3.18
2612 2905 6.045577 AGAGGGTCTCAAAGGAAATTTTCCTA 59.954 38.462 26.94 13.52 45.43 2.94
2613 2906 5.162936 AGAGGGTCTCAAAGGAAATTTTCCT 60.163 40.000 22.46 22.46 46.88 3.36
2614 2907 5.080337 AGAGGGTCTCAAAGGAAATTTTCC 58.920 41.667 18.71 18.71 40.56 3.13
2615 2908 6.943146 ACTAGAGGGTCTCAAAGGAAATTTTC 59.057 38.462 0.00 0.24 32.06 2.29
2616 2909 6.853490 ACTAGAGGGTCTCAAAGGAAATTTT 58.147 36.000 0.00 0.00 32.06 1.82
2617 2910 6.455690 ACTAGAGGGTCTCAAAGGAAATTT 57.544 37.500 0.00 0.00 32.06 1.82
2618 2911 6.455690 AACTAGAGGGTCTCAAAGGAAATT 57.544 37.500 0.00 0.00 32.06 1.82
2619 2912 6.183361 ACAAACTAGAGGGTCTCAAAGGAAAT 60.183 38.462 0.00 0.00 32.06 2.17
2620 2913 5.132144 ACAAACTAGAGGGTCTCAAAGGAAA 59.868 40.000 0.00 0.00 32.06 3.13
2621 2914 4.658901 ACAAACTAGAGGGTCTCAAAGGAA 59.341 41.667 0.00 0.00 32.06 3.36
2622 2915 4.232091 ACAAACTAGAGGGTCTCAAAGGA 58.768 43.478 0.00 0.00 32.06 3.36
2623 2916 4.625607 ACAAACTAGAGGGTCTCAAAGG 57.374 45.455 0.00 0.00 32.06 3.11
2624 2917 6.591750 TCTACAAACTAGAGGGTCTCAAAG 57.408 41.667 0.00 0.00 32.06 2.77
2625 2918 6.989155 TTCTACAAACTAGAGGGTCTCAAA 57.011 37.500 0.00 0.00 32.06 2.69
2626 2919 6.070767 CCATTCTACAAACTAGAGGGTCTCAA 60.071 42.308 0.00 0.00 32.06 3.02
2627 2920 5.422331 CCATTCTACAAACTAGAGGGTCTCA 59.578 44.000 0.00 0.00 32.06 3.27
2628 2921 5.657302 TCCATTCTACAAACTAGAGGGTCTC 59.343 44.000 0.00 0.00 0.00 3.36
2629 2922 5.590818 TCCATTCTACAAACTAGAGGGTCT 58.409 41.667 0.00 0.00 0.00 3.85
2630 2923 5.934402 TCCATTCTACAAACTAGAGGGTC 57.066 43.478 0.00 0.00 0.00 4.46
2631 2924 6.126739 GGAATCCATTCTACAAACTAGAGGGT 60.127 42.308 0.00 0.00 37.00 4.34
2632 2925 6.100424 AGGAATCCATTCTACAAACTAGAGGG 59.900 42.308 0.61 0.00 37.00 4.30
2633 2926 7.130681 AGGAATCCATTCTACAAACTAGAGG 57.869 40.000 0.61 0.00 37.00 3.69
2636 2929 9.495572 GGAATAGGAATCCATTCTACAAACTAG 57.504 37.037 17.55 0.00 36.92 2.57
2637 2930 9.225682 AGGAATAGGAATCCATTCTACAAACTA 57.774 33.333 17.55 0.00 39.55 2.24
2638 2931 8.107196 AGGAATAGGAATCCATTCTACAAACT 57.893 34.615 17.55 7.84 39.55 2.66
2668 2961 8.980481 AAATGTGACGAATTTATTCCTATCCT 57.020 30.769 0.00 0.00 33.28 3.24
2696 2989 9.973246 GACCAAAGAGTTTCAAAGAAAATTTTC 57.027 29.630 21.00 21.00 37.45 2.29
2697 2990 8.655970 CGACCAAAGAGTTTCAAAGAAAATTTT 58.344 29.630 2.28 2.28 0.00 1.82
2698 2991 7.277760 CCGACCAAAGAGTTTCAAAGAAAATTT 59.722 33.333 0.00 0.00 0.00 1.82
2699 2992 6.756542 CCGACCAAAGAGTTTCAAAGAAAATT 59.243 34.615 0.00 0.00 0.00 1.82
2700 2993 6.127451 ACCGACCAAAGAGTTTCAAAGAAAAT 60.127 34.615 0.00 0.00 0.00 1.82
2701 2994 5.184287 ACCGACCAAAGAGTTTCAAAGAAAA 59.816 36.000 0.00 0.00 0.00 2.29
2702 2995 4.703093 ACCGACCAAAGAGTTTCAAAGAAA 59.297 37.500 0.00 0.00 0.00 2.52
2703 2996 4.266714 ACCGACCAAAGAGTTTCAAAGAA 58.733 39.130 0.00 0.00 0.00 2.52
2704 2997 3.881220 ACCGACCAAAGAGTTTCAAAGA 58.119 40.909 0.00 0.00 0.00 2.52
2705 2998 4.213482 CCTACCGACCAAAGAGTTTCAAAG 59.787 45.833 0.00 0.00 0.00 2.77
2706 2999 4.131596 CCTACCGACCAAAGAGTTTCAAA 58.868 43.478 0.00 0.00 0.00 2.69
2707 3000 3.388676 TCCTACCGACCAAAGAGTTTCAA 59.611 43.478 0.00 0.00 0.00 2.69
2708 3001 2.967201 TCCTACCGACCAAAGAGTTTCA 59.033 45.455 0.00 0.00 0.00 2.69
2709 3002 3.672767 TCCTACCGACCAAAGAGTTTC 57.327 47.619 0.00 0.00 0.00 2.78
2710 3003 4.635699 ATTCCTACCGACCAAAGAGTTT 57.364 40.909 0.00 0.00 0.00 2.66
2711 3004 5.021458 TCTATTCCTACCGACCAAAGAGTT 58.979 41.667 0.00 0.00 0.00 3.01
2712 3005 4.607239 TCTATTCCTACCGACCAAAGAGT 58.393 43.478 0.00 0.00 0.00 3.24
2713 3006 5.793030 ATCTATTCCTACCGACCAAAGAG 57.207 43.478 0.00 0.00 0.00 2.85
2714 3007 6.383147 AGAAATCTATTCCTACCGACCAAAGA 59.617 38.462 0.00 0.00 0.00 2.52
2715 3008 6.583562 AGAAATCTATTCCTACCGACCAAAG 58.416 40.000 0.00 0.00 0.00 2.77
2716 3009 6.555463 AGAAATCTATTCCTACCGACCAAA 57.445 37.500 0.00 0.00 0.00 3.28
2717 3010 7.850935 ATAGAAATCTATTCCTACCGACCAA 57.149 36.000 0.00 0.00 35.77 3.67
2718 3011 7.850935 AATAGAAATCTATTCCTACCGACCA 57.149 36.000 9.38 0.00 43.57 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.