Multiple sequence alignment - TraesCS2A01G318400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G318400 chr2A 100.000 4446 0 0 1 4446 543569083 543573528 0.000000e+00 8211.0
1 TraesCS2A01G318400 chr2A 81.040 865 161 3 2 865 761484663 761485525 0.000000e+00 686.0
2 TraesCS2A01G318400 chr2B 94.052 2606 116 21 1476 4064 480919996 480922579 0.000000e+00 3917.0
3 TraesCS2A01G318400 chr2B 91.980 586 42 4 893 1476 480919256 480919838 0.000000e+00 817.0
4 TraesCS2A01G318400 chr2B 88.525 61 2 1 4009 4064 480925577 480925637 7.980000e-08 69.4
5 TraesCS2A01G318400 chr2D 93.982 2609 115 15 1476 4065 405406492 405409077 0.000000e+00 3910.0
6 TraesCS2A01G318400 chr2D 93.548 589 26 8 887 1472 405405583 405406162 0.000000e+00 867.0
7 TraesCS2A01G318400 chr2D 78.562 751 153 5 116 864 522904503 522905247 5.170000e-134 488.0
8 TraesCS2A01G318400 chr5B 91.889 863 70 0 1 863 618482175 618483037 0.000000e+00 1206.0
9 TraesCS2A01G318400 chr3B 89.942 865 87 0 1 865 16222816 16223680 0.000000e+00 1116.0
10 TraesCS2A01G318400 chr4A 89.687 863 88 1 1 863 677357994 677358855 0.000000e+00 1099.0
11 TraesCS2A01G318400 chr4B 82.019 862 152 3 5 864 233485293 233484433 0.000000e+00 730.0
12 TraesCS2A01G318400 chr4D 81.723 859 155 2 5 863 8822826 8821970 0.000000e+00 715.0
13 TraesCS2A01G318400 chr3A 80.556 864 166 2 5 868 440616029 440615168 0.000000e+00 664.0
14 TraesCS2A01G318400 chr3D 80.858 862 148 7 2 863 38741292 38742136 0.000000e+00 662.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G318400 chr2A 543569083 543573528 4445 False 8211.000000 8211 100.000 1 4446 1 chr2A.!!$F1 4445
1 TraesCS2A01G318400 chr2A 761484663 761485525 862 False 686.000000 686 81.040 2 865 1 chr2A.!!$F2 863
2 TraesCS2A01G318400 chr2B 480919256 480925637 6381 False 1601.133333 3917 91.519 893 4064 3 chr2B.!!$F1 3171
3 TraesCS2A01G318400 chr2D 405405583 405409077 3494 False 2388.500000 3910 93.765 887 4065 2 chr2D.!!$F2 3178
4 TraesCS2A01G318400 chr2D 522904503 522905247 744 False 488.000000 488 78.562 116 864 1 chr2D.!!$F1 748
5 TraesCS2A01G318400 chr5B 618482175 618483037 862 False 1206.000000 1206 91.889 1 863 1 chr5B.!!$F1 862
6 TraesCS2A01G318400 chr3B 16222816 16223680 864 False 1116.000000 1116 89.942 1 865 1 chr3B.!!$F1 864
7 TraesCS2A01G318400 chr4A 677357994 677358855 861 False 1099.000000 1099 89.687 1 863 1 chr4A.!!$F1 862
8 TraesCS2A01G318400 chr4B 233484433 233485293 860 True 730.000000 730 82.019 5 864 1 chr4B.!!$R1 859
9 TraesCS2A01G318400 chr4D 8821970 8822826 856 True 715.000000 715 81.723 5 863 1 chr4D.!!$R1 858
10 TraesCS2A01G318400 chr3A 440615168 440616029 861 True 664.000000 664 80.556 5 868 1 chr3A.!!$R1 863
11 TraesCS2A01G318400 chr3D 38741292 38742136 844 False 662.000000 662 80.858 2 863 1 chr3D.!!$F1 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 416 0.320858 TGACGGCGCCATTTCAACTA 60.321 50.0 28.98 0.17 0.00 2.24 F
1236 1241 0.250081 CCGAGGCTTAGAATCCTGCC 60.250 60.0 0.00 0.00 45.21 4.85 F
1713 2044 0.179081 GCGGTGACCCAGGAGTAATC 60.179 60.0 0.00 0.00 0.00 1.75 F
2181 2516 0.877071 AAGGCAGTGCGATTTCAGTG 59.123 50.0 9.45 0.00 39.70 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1294 1299 1.105167 TCGTGTCGTCACCAACCTCT 61.105 55.0 7.21 0.0 41.09 3.69 R
3002 3343 0.258774 ACTGTTTGAGGTTGGGTGCT 59.741 50.0 0.00 0.0 0.00 4.40 R
3232 3587 0.602106 CAGTGCCATCTAGCATCCCG 60.602 60.0 0.00 0.0 46.24 5.14 R
4154 4526 0.388659 TTCCCGACGAAAACTTCCGA 59.611 50.0 0.00 0.0 0.00 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.672854 CCGTGGAAGATACCTGGCGA 61.673 60.000 0.00 0.00 0.00 5.54
88 89 2.670148 GCATTGGGGGACGAGGAGT 61.670 63.158 0.00 0.00 0.00 3.85
90 91 1.200519 CATTGGGGGACGAGGAGTTA 58.799 55.000 0.00 0.00 0.00 2.24
171 172 1.617947 AATCGACCTCCCAGCAGGAC 61.618 60.000 0.00 0.00 40.93 3.85
178 179 0.895530 CTCCCAGCAGGACTTAACGA 59.104 55.000 0.00 0.00 40.93 3.85
223 224 2.032681 GGTGGGCTCGCAGAAAGT 59.967 61.111 0.00 0.00 34.09 2.66
231 232 1.129437 GCTCGCAGAAAGTCAATCCAC 59.871 52.381 0.00 0.00 34.09 4.02
262 263 4.636206 AGTTTCAAAGTCCACTGTCAACTC 59.364 41.667 0.00 0.00 0.00 3.01
265 266 3.197766 TCAAAGTCCACTGTCAACTCTGT 59.802 43.478 0.00 0.00 0.00 3.41
279 280 3.887621 ACTCTGTGCTTTATAAGGCGA 57.112 42.857 14.11 5.50 0.00 5.54
302 303 4.357918 TTTTGGAGGAGCTGGATATAGC 57.642 45.455 0.00 0.00 44.01 2.97
309 310 1.273606 GAGCTGGATATAGCCGAAGCA 59.726 52.381 18.47 0.00 44.76 3.91
312 313 2.681706 CTGGATATAGCCGAAGCACAG 58.318 52.381 1.91 0.00 43.56 3.66
370 371 2.675242 CGGGTATGGCTTCCACCCA 61.675 63.158 9.55 0.00 39.12 4.51
384 385 0.609957 CACCCAATGGAGAAGCAGCA 60.610 55.000 0.00 0.00 34.81 4.41
387 388 1.619827 CCCAATGGAGAAGCAGCAAAA 59.380 47.619 0.00 0.00 0.00 2.44
399 400 5.979517 AGAAGCAGCAAAACTAAATTGTGAC 59.020 36.000 0.00 0.00 0.00 3.67
408 409 1.132262 CTAAATTGTGACGGCGCCATT 59.868 47.619 28.98 14.58 0.00 3.16
415 416 0.320858 TGACGGCGCCATTTCAACTA 60.321 50.000 28.98 0.17 0.00 2.24
458 459 3.003897 GCCGTGGTGTGTCAAGATAAAAA 59.996 43.478 0.00 0.00 0.00 1.94
459 460 4.533222 CCGTGGTGTGTCAAGATAAAAAC 58.467 43.478 0.00 0.00 0.00 2.43
490 491 2.465860 TGGCGCTTCAGCTTTAGTTA 57.534 45.000 7.64 0.00 39.32 2.24
498 499 4.441634 GCTTCAGCTTTAGTTATCGAGGGA 60.442 45.833 0.00 0.00 38.21 4.20
501 502 6.971726 TCAGCTTTAGTTATCGAGGGATTA 57.028 37.500 0.00 0.00 34.00 1.75
618 621 6.212388 ACTGTCTAGAAGTGATCTCCAACATT 59.788 38.462 0.00 0.00 39.71 2.71
619 622 6.401394 TGTCTAGAAGTGATCTCCAACATTG 58.599 40.000 0.00 0.00 39.71 2.82
732 735 5.298777 ACGTAGAGTACATAATTTCGAGGCT 59.701 40.000 0.00 0.00 0.00 4.58
795 798 1.043673 ACGTGTGGCTAGGGATCCTC 61.044 60.000 12.58 1.55 34.61 3.71
883 886 2.014128 ACATATTCGCGACCTTTTGGG 58.986 47.619 9.15 0.00 46.08 4.12
884 887 2.285083 CATATTCGCGACCTTTTGGGA 58.715 47.619 9.15 0.00 46.08 4.37
885 888 2.018542 TATTCGCGACCTTTTGGGAG 57.981 50.000 9.15 0.00 46.08 4.30
1000 1003 2.685364 GCGGCTGCGAACCTATAAA 58.315 52.632 0.00 0.00 0.00 1.40
1001 1004 1.226746 GCGGCTGCGAACCTATAAAT 58.773 50.000 0.00 0.00 0.00 1.40
1003 1006 1.531149 CGGCTGCGAACCTATAAATGG 59.469 52.381 0.00 0.00 0.00 3.16
1005 1008 1.946768 GCTGCGAACCTATAAATGGCA 59.053 47.619 0.00 0.00 0.00 4.92
1026 1029 2.181021 GTCGTGAGCTGGTACGGG 59.819 66.667 12.91 0.00 40.48 5.28
1130 1133 3.039011 ACCAGGTAACGAGCAATCCTAT 58.961 45.455 0.00 0.00 46.39 2.57
1232 1237 1.030457 TCGTCCGAGGCTTAGAATCC 58.970 55.000 0.00 0.00 0.00 3.01
1236 1241 0.250081 CCGAGGCTTAGAATCCTGCC 60.250 60.000 0.00 0.00 45.21 4.85
1261 1266 2.871637 GCTTTCCCAGGAACAAAATGCC 60.872 50.000 0.00 0.00 33.41 4.40
1264 1269 1.444212 CCAGGAACAAAATGCCGCG 60.444 57.895 0.00 0.00 0.00 6.46
1294 1299 8.844244 GGAAGGACGTATAACAGAGTTATTCTA 58.156 37.037 7.61 0.00 33.83 2.10
1351 1356 5.163550 CGTCTCTCTATGGTCCAACAATACA 60.164 44.000 0.00 0.00 0.00 2.29
1416 1421 1.383248 AACTGAGGATCCGAGGGGG 60.383 63.158 15.88 4.34 37.02 5.40
1472 1477 4.645535 TGCTTTCAGTTGCAATCTACTCT 58.354 39.130 0.59 0.00 36.15 3.24
1473 1478 4.453478 TGCTTTCAGTTGCAATCTACTCTG 59.547 41.667 0.59 4.14 36.15 3.35
1479 1810 6.521162 TCAGTTGCAATCTACTCTGTAACAA 58.479 36.000 0.59 0.00 39.68 2.83
1483 1814 8.094548 AGTTGCAATCTACTCTGTAACAACATA 58.905 33.333 0.59 0.00 39.68 2.29
1489 1820 7.712204 TCTACTCTGTAACAACATATGGTGA 57.288 36.000 27.32 2.56 35.97 4.02
1611 1942 7.224297 TGAACTCTAAAGATTTAGTGCAACCT 58.776 34.615 11.15 0.00 40.69 3.50
1655 1986 5.221224 TGTTTTATTCACTGGTGCTCTTTGG 60.221 40.000 0.00 0.00 0.00 3.28
1713 2044 0.179081 GCGGTGACCCAGGAGTAATC 60.179 60.000 0.00 0.00 0.00 1.75
1754 2085 8.336235 ACCATCTTTACTATTGAGGAAATTGGA 58.664 33.333 14.26 0.00 39.19 3.53
1821 2153 6.475402 GGAAAAGGTGGCATTATATTTGAACG 59.525 38.462 0.00 0.00 0.00 3.95
1937 2270 4.269183 TGTTATGTGGGGCTCATGTTTAG 58.731 43.478 0.00 0.00 0.00 1.85
1938 2271 2.442236 ATGTGGGGCTCATGTTTAGG 57.558 50.000 0.00 0.00 0.00 2.69
1996 2331 9.661563 TTGTGTCTAGAAGAAAAAGAAACTGTA 57.338 29.630 0.00 0.00 30.23 2.74
1997 2332 9.832445 TGTGTCTAGAAGAAAAAGAAACTGTAT 57.168 29.630 0.00 0.00 30.23 2.29
2040 2375 7.068716 ACATGGGCTCTTTTATTAGGAATTGAC 59.931 37.037 0.00 0.00 0.00 3.18
2177 2512 1.153958 GCCAAGGCAGTGCGATTTC 60.154 57.895 9.45 0.00 41.49 2.17
2181 2516 0.877071 AAGGCAGTGCGATTTCAGTG 59.123 50.000 9.45 0.00 39.70 3.66
2255 2590 3.612472 TTCCGCTTAAAGGTTCAAACG 57.388 42.857 0.00 0.00 0.00 3.60
2299 2634 9.851686 TGAGCTTGTTTATAAGATGGTCATAAT 57.148 29.630 0.00 0.00 33.50 1.28
2329 2664 2.030805 GCATGTCACTCCTGTGTTTTCC 60.031 50.000 0.00 0.00 44.14 3.13
2587 2926 6.846350 AGAATGAAAAATGATTCGACAGACC 58.154 36.000 0.00 0.00 34.36 3.85
2850 3189 9.113838 GTCAACATTTCATCAGTTATATGTCCT 57.886 33.333 0.00 0.00 0.00 3.85
2892 3233 9.713740 CTGCTTGTCATGATTTATAAAACTCTC 57.286 33.333 0.00 0.00 0.00 3.20
2912 3253 3.878103 CTCTGCAGAAATCTTCATGGAGG 59.122 47.826 18.85 0.00 31.95 4.30
3004 3345 6.397272 CCATTCATGGTAAGAGATCTCTAGC 58.603 44.000 25.37 20.43 43.05 3.42
3005 3346 6.014755 CCATTCATGGTAAGAGATCTCTAGCA 60.015 42.308 25.37 24.38 43.05 3.49
3006 3347 6.398234 TTCATGGTAAGAGATCTCTAGCAC 57.602 41.667 25.37 20.71 39.39 4.40
3007 3348 4.830046 TCATGGTAAGAGATCTCTAGCACC 59.170 45.833 28.28 28.28 39.39 5.01
3008 3349 3.567397 TGGTAAGAGATCTCTAGCACCC 58.433 50.000 30.03 22.73 39.39 4.61
3009 3350 3.052869 TGGTAAGAGATCTCTAGCACCCA 60.053 47.826 30.03 24.25 39.39 4.51
3010 3351 3.961408 GGTAAGAGATCTCTAGCACCCAA 59.039 47.826 25.37 1.93 39.39 4.12
3011 3352 4.202172 GGTAAGAGATCTCTAGCACCCAAC 60.202 50.000 25.37 12.43 39.39 3.77
3012 3353 2.393646 AGAGATCTCTAGCACCCAACC 58.606 52.381 23.98 0.00 38.35 3.77
3178 3533 3.872696 TGATGTGTCCGAATGCTACAAT 58.127 40.909 0.00 0.00 0.00 2.71
3218 3573 4.469586 TGGTAGATACTTGTGAATCTGGCA 59.530 41.667 0.00 0.00 34.36 4.92
3219 3574 5.053145 GGTAGATACTTGTGAATCTGGCAG 58.947 45.833 8.58 8.58 34.36 4.85
3232 3587 1.584380 CTGGCAGCTCAAGCACTTCC 61.584 60.000 0.00 0.54 45.16 3.46
3315 3670 5.301298 AGCTTGATTTTCATCTTATCTGGCC 59.699 40.000 0.00 0.00 0.00 5.36
3320 3675 6.266103 TGATTTTCATCTTATCTGGCCCATTC 59.734 38.462 0.00 0.00 0.00 2.67
3352 3707 1.891150 CTGCTGAACCAAGGCAAGAAT 59.109 47.619 0.00 0.00 35.49 2.40
3409 3764 3.756434 GGAAAAATGTTGAGGATGGACGA 59.244 43.478 0.00 0.00 0.00 4.20
3467 3822 6.789268 TGAGATGGGAATTCTTCTTTTACCA 58.211 36.000 5.23 1.88 0.00 3.25
3471 3826 6.588719 TGGGAATTCTTCTTTTACCACATG 57.411 37.500 5.23 0.00 0.00 3.21
3566 3921 1.765314 GGTGACATGGCTAGGATGACT 59.235 52.381 0.00 0.00 0.00 3.41
3667 4027 2.291043 GGCAGGGAAGGTTCTCCGA 61.291 63.158 0.00 0.00 36.21 4.55
3862 4229 2.593148 TTCTCCTGCGCGCCAAAA 60.593 55.556 30.77 12.83 0.00 2.44
3874 4241 2.340328 GCCAAAACACCTAGCCCCG 61.340 63.158 0.00 0.00 0.00 5.73
3925 4292 2.796557 AGAGAGGTTCGTCACAGATGA 58.203 47.619 0.00 0.00 0.00 2.92
3959 4326 4.530161 AGCTAGACCTGGCTCATTTATAGG 59.470 45.833 1.85 0.00 44.35 2.57
3998 4365 1.937899 GCCAGTTGTAACAGACACGTT 59.062 47.619 0.00 0.00 37.96 3.99
4036 4403 3.135348 TGGTGGTGATGAAGATCTGATCC 59.865 47.826 13.83 0.81 0.00 3.36
4050 4422 1.326328 TGATCCGGATCAGCTCTGAG 58.674 55.000 37.61 0.00 42.42 3.35
4065 4437 5.873712 CAGCTCTGAGAAACATGTTACTCAT 59.126 40.000 12.39 0.00 38.43 2.90
4066 4438 7.038048 CAGCTCTGAGAAACATGTTACTCATA 58.962 38.462 12.39 0.00 38.43 2.15
4067 4439 7.009999 CAGCTCTGAGAAACATGTTACTCATAC 59.990 40.741 12.39 3.87 38.43 2.39
4068 4440 6.813649 GCTCTGAGAAACATGTTACTCATACA 59.186 38.462 12.39 7.78 38.43 2.29
4069 4441 7.331934 GCTCTGAGAAACATGTTACTCATACAA 59.668 37.037 12.39 0.00 38.43 2.41
4070 4442 8.534333 TCTGAGAAACATGTTACTCATACAAC 57.466 34.615 12.39 0.00 38.43 3.32
4071 4443 8.147704 TCTGAGAAACATGTTACTCATACAACA 58.852 33.333 12.39 2.10 38.43 3.33
4072 4444 8.310406 TGAGAAACATGTTACTCATACAACAG 57.690 34.615 12.39 0.00 38.01 3.16
4073 4445 8.147704 TGAGAAACATGTTACTCATACAACAGA 58.852 33.333 12.39 0.00 38.01 3.41
4074 4446 8.902540 AGAAACATGTTACTCATACAACAGAA 57.097 30.769 12.39 0.00 38.01 3.02
4075 4447 8.993121 AGAAACATGTTACTCATACAACAGAAG 58.007 33.333 12.39 0.00 38.01 2.85
4076 4448 8.677148 AAACATGTTACTCATACAACAGAAGT 57.323 30.769 12.39 0.00 38.01 3.01
4077 4449 9.772973 AAACATGTTACTCATACAACAGAAGTA 57.227 29.630 12.39 0.00 38.01 2.24
4078 4450 8.988064 ACATGTTACTCATACAACAGAAGTAG 57.012 34.615 0.00 0.00 38.01 2.57
4079 4451 8.585881 ACATGTTACTCATACAACAGAAGTAGT 58.414 33.333 0.00 0.00 38.01 2.73
4080 4452 9.424319 CATGTTACTCATACAACAGAAGTAGTT 57.576 33.333 0.00 0.00 38.01 2.24
4081 4453 9.998106 ATGTTACTCATACAACAGAAGTAGTTT 57.002 29.630 0.00 0.00 38.01 2.66
4082 4454 9.472361 TGTTACTCATACAACAGAAGTAGTTTC 57.528 33.333 0.00 0.00 35.97 2.78
4083 4455 8.636843 GTTACTCATACAACAGAAGTAGTTTCG 58.363 37.037 0.00 0.00 40.86 3.46
4084 4456 6.157211 ACTCATACAACAGAAGTAGTTTCGG 58.843 40.000 0.00 0.00 40.86 4.30
4085 4457 6.015688 ACTCATACAACAGAAGTAGTTTCGGA 60.016 38.462 0.00 0.00 40.86 4.55
4086 4458 6.154445 TCATACAACAGAAGTAGTTTCGGAC 58.846 40.000 0.00 0.00 40.86 4.79
4087 4459 4.395959 ACAACAGAAGTAGTTTCGGACA 57.604 40.909 0.00 0.00 40.86 4.02
4088 4460 4.761975 ACAACAGAAGTAGTTTCGGACAA 58.238 39.130 0.00 0.00 40.86 3.18
4089 4461 5.180271 ACAACAGAAGTAGTTTCGGACAAA 58.820 37.500 0.00 0.00 40.86 2.83
4090 4462 5.064325 ACAACAGAAGTAGTTTCGGACAAAC 59.936 40.000 0.00 0.00 40.86 2.93
4091 4463 4.761975 ACAGAAGTAGTTTCGGACAAACA 58.238 39.130 1.65 0.00 40.86 2.83
4092 4464 5.365619 ACAGAAGTAGTTTCGGACAAACAT 58.634 37.500 1.65 0.00 40.86 2.71
4093 4465 5.236478 ACAGAAGTAGTTTCGGACAAACATG 59.764 40.000 0.00 0.00 40.86 3.21
4094 4466 5.236478 CAGAAGTAGTTTCGGACAAACATGT 59.764 40.000 0.00 0.00 40.86 3.21
4095 4467 5.820947 AGAAGTAGTTTCGGACAAACATGTT 59.179 36.000 4.92 4.92 40.86 2.71
4096 4468 6.987992 AGAAGTAGTTTCGGACAAACATGTTA 59.012 34.615 12.39 0.00 40.86 2.41
4113 4485 9.581099 AAACATGTTAGTAGTTTTGGTCTTTTG 57.419 29.630 12.39 0.00 31.95 2.44
4114 4486 8.288689 ACATGTTAGTAGTTTTGGTCTTTTGT 57.711 30.769 0.00 0.00 0.00 2.83
4116 4488 7.925043 TGTTAGTAGTTTTGGTCTTTTGTCA 57.075 32.000 0.00 0.00 0.00 3.58
4118 4490 8.962679 TGTTAGTAGTTTTGGTCTTTTGTCAAT 58.037 29.630 0.00 0.00 0.00 2.57
4119 4491 9.233232 GTTAGTAGTTTTGGTCTTTTGTCAATG 57.767 33.333 0.00 0.00 0.00 2.82
4120 4492 7.404671 AGTAGTTTTGGTCTTTTGTCAATGT 57.595 32.000 0.00 0.00 0.00 2.71
4121 4493 7.836842 AGTAGTTTTGGTCTTTTGTCAATGTT 58.163 30.769 0.00 0.00 0.00 2.71
4122 4494 8.962679 AGTAGTTTTGGTCTTTTGTCAATGTTA 58.037 29.630 0.00 0.00 0.00 2.41
4123 4495 9.744468 GTAGTTTTGGTCTTTTGTCAATGTTAT 57.256 29.630 0.00 0.00 0.00 1.89
4128 4500 9.959749 TTTGGTCTTTTGTCAATGTTATTACTC 57.040 29.630 0.00 0.00 0.00 2.59
4130 4502 7.094975 TGGTCTTTTGTCAATGTTATTACTCCG 60.095 37.037 0.00 0.00 0.00 4.63
4131 4503 6.741358 GTCTTTTGTCAATGTTATTACTCCGC 59.259 38.462 0.00 0.00 0.00 5.54
4132 4504 5.554822 TTTGTCAATGTTATTACTCCGCC 57.445 39.130 0.00 0.00 0.00 6.13
4133 4505 4.209307 TGTCAATGTTATTACTCCGCCA 57.791 40.909 0.00 0.00 0.00 5.69
4134 4506 4.776349 TGTCAATGTTATTACTCCGCCAT 58.224 39.130 0.00 0.00 0.00 4.40
4135 4507 4.814234 TGTCAATGTTATTACTCCGCCATC 59.186 41.667 0.00 0.00 0.00 3.51
4137 4509 5.295787 GTCAATGTTATTACTCCGCCATCAA 59.704 40.000 0.00 0.00 0.00 2.57
4140 4512 5.092554 TGTTATTACTCCGCCATCAAAGA 57.907 39.130 0.00 0.00 0.00 2.52
4141 4513 5.492895 TGTTATTACTCCGCCATCAAAGAA 58.507 37.500 0.00 0.00 0.00 2.52
4142 4514 5.941058 TGTTATTACTCCGCCATCAAAGAAA 59.059 36.000 0.00 0.00 0.00 2.52
4143 4515 6.093495 TGTTATTACTCCGCCATCAAAGAAAG 59.907 38.462 0.00 0.00 0.00 2.62
4144 4516 1.168714 ACTCCGCCATCAAAGAAAGC 58.831 50.000 0.00 0.00 0.00 3.51
4145 4517 1.271597 ACTCCGCCATCAAAGAAAGCT 60.272 47.619 0.00 0.00 0.00 3.74
4146 4518 1.815003 CTCCGCCATCAAAGAAAGCTT 59.185 47.619 0.00 0.00 35.37 3.74
4147 4519 1.541147 TCCGCCATCAAAGAAAGCTTG 59.459 47.619 0.00 0.00 33.79 4.01
4148 4520 1.403249 CCGCCATCAAAGAAAGCTTGG 60.403 52.381 0.00 0.00 33.79 3.61
4149 4521 1.270550 CGCCATCAAAGAAAGCTTGGT 59.729 47.619 0.00 0.00 33.79 3.67
4150 4522 2.288395 CGCCATCAAAGAAAGCTTGGTT 60.288 45.455 0.00 0.00 33.79 3.67
4151 4523 3.732212 GCCATCAAAGAAAGCTTGGTTT 58.268 40.909 0.00 0.00 33.79 3.27
4152 4524 4.129380 GCCATCAAAGAAAGCTTGGTTTT 58.871 39.130 0.00 0.00 33.79 2.43
4153 4525 5.296748 GCCATCAAAGAAAGCTTGGTTTTA 58.703 37.500 0.00 0.00 33.79 1.52
4154 4526 5.934043 GCCATCAAAGAAAGCTTGGTTTTAT 59.066 36.000 0.00 0.00 33.79 1.40
4155 4527 6.091305 GCCATCAAAGAAAGCTTGGTTTTATC 59.909 38.462 0.00 0.00 33.79 1.75
4156 4528 6.308766 CCATCAAAGAAAGCTTGGTTTTATCG 59.691 38.462 0.00 0.00 33.79 2.92
4157 4529 5.768317 TCAAAGAAAGCTTGGTTTTATCGG 58.232 37.500 0.00 0.00 33.79 4.18
4158 4530 5.533154 TCAAAGAAAGCTTGGTTTTATCGGA 59.467 36.000 0.00 0.00 33.79 4.55
4159 4531 6.039941 TCAAAGAAAGCTTGGTTTTATCGGAA 59.960 34.615 0.00 0.00 33.79 4.30
4160 4532 5.629079 AGAAAGCTTGGTTTTATCGGAAG 57.371 39.130 0.00 0.00 0.00 3.46
4161 4533 5.070685 AGAAAGCTTGGTTTTATCGGAAGT 58.929 37.500 0.00 0.00 0.00 3.01
4162 4534 5.535030 AGAAAGCTTGGTTTTATCGGAAGTT 59.465 36.000 0.00 0.00 0.00 2.66
4163 4535 5.784578 AAGCTTGGTTTTATCGGAAGTTT 57.215 34.783 0.00 0.00 0.00 2.66
4164 4536 5.784578 AGCTTGGTTTTATCGGAAGTTTT 57.215 34.783 0.00 0.00 0.00 2.43
4165 4537 5.769367 AGCTTGGTTTTATCGGAAGTTTTC 58.231 37.500 0.00 0.00 0.00 2.29
4166 4538 4.615541 GCTTGGTTTTATCGGAAGTTTTCG 59.384 41.667 0.00 0.00 0.00 3.46
4167 4539 5.754543 TTGGTTTTATCGGAAGTTTTCGT 57.245 34.783 0.00 0.00 0.00 3.85
4168 4540 5.347012 TGGTTTTATCGGAAGTTTTCGTC 57.653 39.130 0.00 0.00 0.00 4.20
4169 4541 4.084433 TGGTTTTATCGGAAGTTTTCGTCG 60.084 41.667 0.00 0.00 0.00 5.12
4170 4542 4.388790 GTTTTATCGGAAGTTTTCGTCGG 58.611 43.478 0.00 0.00 0.00 4.79
4171 4543 2.282701 TATCGGAAGTTTTCGTCGGG 57.717 50.000 0.00 0.00 31.88 5.14
4172 4544 0.604578 ATCGGAAGTTTTCGTCGGGA 59.395 50.000 0.00 0.00 31.88 5.14
4173 4545 0.388659 TCGGAAGTTTTCGTCGGGAA 59.611 50.000 0.00 0.00 31.88 3.97
4174 4546 1.202510 TCGGAAGTTTTCGTCGGGAAA 60.203 47.619 0.00 0.00 42.75 3.13
4197 4569 4.497291 AAAAGAAAGGTTGGTTTTCCCC 57.503 40.909 0.00 0.00 39.73 4.81
4198 4570 2.858787 AGAAAGGTTGGTTTTCCCCA 57.141 45.000 0.00 0.00 39.73 4.96
4199 4571 2.394632 AGAAAGGTTGGTTTTCCCCAC 58.605 47.619 0.00 0.00 39.73 4.61
4200 4572 2.023404 AGAAAGGTTGGTTTTCCCCACT 60.023 45.455 0.00 0.00 39.73 4.00
4201 4573 2.561209 AAGGTTGGTTTTCCCCACTT 57.439 45.000 0.00 0.00 39.73 3.16
4202 4574 2.082140 AGGTTGGTTTTCCCCACTTC 57.918 50.000 0.00 0.00 39.73 3.01
4203 4575 1.289530 AGGTTGGTTTTCCCCACTTCA 59.710 47.619 0.00 0.00 39.73 3.02
4204 4576 2.112190 GGTTGGTTTTCCCCACTTCAA 58.888 47.619 0.00 0.00 39.73 2.69
4205 4577 2.502130 GGTTGGTTTTCCCCACTTCAAA 59.498 45.455 0.00 0.00 39.73 2.69
4206 4578 3.055021 GGTTGGTTTTCCCCACTTCAAAA 60.055 43.478 0.00 0.00 39.73 2.44
4207 4579 4.565861 GGTTGGTTTTCCCCACTTCAAAAA 60.566 41.667 0.00 0.00 39.73 1.94
4229 4601 7.718334 AAAAAGAAGAAGAGTTTCCCTCAAA 57.282 32.000 0.00 0.00 43.12 2.69
4230 4602 7.718334 AAAAGAAGAAGAGTTTCCCTCAAAA 57.282 32.000 0.00 0.00 43.12 2.44
4231 4603 7.718334 AAAGAAGAAGAGTTTCCCTCAAAAA 57.282 32.000 0.00 0.00 43.12 1.94
4268 4640 1.005748 GCAGCTTGGTTTTGCCTCC 60.006 57.895 0.00 0.00 38.35 4.30
4292 4664 0.823356 TTCGCAAAGAAGGCCTTGCT 60.823 50.000 26.25 16.75 34.79 3.91
4293 4665 1.080974 CGCAAAGAAGGCCTTGCTG 60.081 57.895 26.25 17.39 34.79 4.41
4294 4666 1.518056 CGCAAAGAAGGCCTTGCTGA 61.518 55.000 26.25 0.00 34.79 4.26
4296 4668 0.239347 CAAAGAAGGCCTTGCTGACG 59.761 55.000 26.25 8.15 34.79 4.35
4297 4669 0.108585 AAAGAAGGCCTTGCTGACGA 59.891 50.000 26.25 0.00 34.79 4.20
4299 4671 0.326264 AGAAGGCCTTGCTGACGATT 59.674 50.000 26.25 0.00 0.00 3.34
4300 4672 0.729690 GAAGGCCTTGCTGACGATTC 59.270 55.000 26.25 0.00 0.00 2.52
4301 4673 0.678048 AAGGCCTTGCTGACGATTCC 60.678 55.000 19.73 0.00 0.00 3.01
4302 4674 2.464459 GGCCTTGCTGACGATTCCG 61.464 63.158 0.00 0.00 42.50 4.30
4315 4687 1.815132 GATTCCGTGATTGCTTTCGC 58.185 50.000 0.00 0.00 0.00 4.70
4317 4689 2.087501 TTCCGTGATTGCTTTCGCTA 57.912 45.000 0.00 0.00 36.97 4.26
4318 4690 1.640428 TCCGTGATTGCTTTCGCTAG 58.360 50.000 0.00 0.00 36.97 3.42
4319 4691 0.026803 CCGTGATTGCTTTCGCTAGC 59.973 55.000 4.06 4.06 41.59 3.42
4320 4692 0.026803 CGTGATTGCTTTCGCTAGCC 59.973 55.000 9.66 0.00 40.49 3.93
4321 4693 1.373570 GTGATTGCTTTCGCTAGCCT 58.626 50.000 9.66 0.00 40.49 4.58
4322 4694 2.550978 GTGATTGCTTTCGCTAGCCTA 58.449 47.619 9.66 0.00 40.49 3.93
4324 4696 3.059325 GTGATTGCTTTCGCTAGCCTATG 60.059 47.826 9.66 0.89 40.49 2.23
4326 4698 0.830648 TGCTTTCGCTAGCCTATGGT 59.169 50.000 9.66 0.00 40.49 3.55
4327 4699 1.202533 TGCTTTCGCTAGCCTATGGTC 60.203 52.381 9.66 0.00 40.49 4.02
4329 4701 2.474816 CTTTCGCTAGCCTATGGTCAC 58.525 52.381 9.66 0.00 0.00 3.67
4332 4704 2.039418 TCGCTAGCCTATGGTCACAAT 58.961 47.619 9.66 0.00 0.00 2.71
4333 4705 2.434336 TCGCTAGCCTATGGTCACAATT 59.566 45.455 9.66 0.00 0.00 2.32
4334 4706 2.545526 CGCTAGCCTATGGTCACAATTG 59.454 50.000 9.66 3.24 0.00 2.32
4335 4707 3.545703 GCTAGCCTATGGTCACAATTGT 58.454 45.455 4.92 4.92 0.00 2.71
4336 4708 3.947834 GCTAGCCTATGGTCACAATTGTT 59.052 43.478 8.77 0.00 0.00 2.83
4338 4710 5.007724 GCTAGCCTATGGTCACAATTGTTAC 59.992 44.000 8.77 11.50 0.00 2.50
4339 4711 4.270008 AGCCTATGGTCACAATTGTTACC 58.730 43.478 27.88 27.88 41.47 2.85
4340 4712 4.018415 AGCCTATGGTCACAATTGTTACCT 60.018 41.667 31.85 22.64 41.61 3.08
4341 4713 4.335594 GCCTATGGTCACAATTGTTACCTC 59.664 45.833 31.85 17.35 41.61 3.85
4342 4714 5.496556 CCTATGGTCACAATTGTTACCTCA 58.503 41.667 31.85 21.86 41.61 3.86
4343 4715 5.943416 CCTATGGTCACAATTGTTACCTCAA 59.057 40.000 31.85 18.83 41.61 3.02
4345 4717 6.723298 ATGGTCACAATTGTTACCTCAAAA 57.277 33.333 31.85 18.24 41.61 2.44
4347 4719 7.825331 TGGTCACAATTGTTACCTCAAAATA 57.175 32.000 31.85 14.88 41.61 1.40
4349 4721 8.696374 TGGTCACAATTGTTACCTCAAAATAAA 58.304 29.630 31.85 13.70 41.61 1.40
4382 4754 3.040147 GCTTAATAGCGAGCCCATACA 57.960 47.619 0.00 0.00 37.71 2.29
4383 4755 3.399330 GCTTAATAGCGAGCCCATACAA 58.601 45.455 0.00 0.00 37.71 2.41
4384 4756 3.433615 GCTTAATAGCGAGCCCATACAAG 59.566 47.826 0.00 0.00 37.71 3.16
4385 4757 4.799586 GCTTAATAGCGAGCCCATACAAGA 60.800 45.833 0.00 0.00 37.71 3.02
4386 4758 3.393089 AATAGCGAGCCCATACAAGAG 57.607 47.619 0.00 0.00 0.00 2.85
4387 4759 1.040646 TAGCGAGCCCATACAAGAGG 58.959 55.000 0.00 0.00 0.00 3.69
4392 4764 4.857251 CCCATACAAGAGGGCGTC 57.143 61.111 0.00 0.00 38.44 5.19
4393 4765 1.146263 CCCATACAAGAGGGCGTCC 59.854 63.158 0.00 0.00 38.44 4.79
4394 4766 1.622607 CCCATACAAGAGGGCGTCCA 61.623 60.000 9.71 0.00 38.44 4.02
4398 4770 1.496060 TACAAGAGGGCGTCCATGAT 58.504 50.000 9.71 0.00 34.83 2.45
4407 4779 2.613977 GGGCGTCCATGATAAGAGATGG 60.614 54.545 0.00 0.00 40.61 3.51
4418 4790 7.443477 CATGATAAGAGATGGAGATGAAGTGT 58.557 38.462 0.00 0.00 0.00 3.55
4421 4793 3.625853 AGAGATGGAGATGAAGTGTCGA 58.374 45.455 0.00 0.00 0.00 4.20
4422 4794 3.631686 AGAGATGGAGATGAAGTGTCGAG 59.368 47.826 0.00 0.00 0.00 4.04
4423 4795 2.100584 AGATGGAGATGAAGTGTCGAGC 59.899 50.000 0.00 0.00 0.00 5.03
4424 4796 0.532573 TGGAGATGAAGTGTCGAGCC 59.467 55.000 0.00 0.00 0.00 4.70
4426 4798 0.526524 GAGATGAAGTGTCGAGCCGG 60.527 60.000 0.00 0.00 0.00 6.13
4427 4799 0.965866 AGATGAAGTGTCGAGCCGGA 60.966 55.000 5.05 0.00 0.00 5.14
4428 4800 0.802607 GATGAAGTGTCGAGCCGGAC 60.803 60.000 5.05 0.00 37.45 4.79
4429 4801 1.251527 ATGAAGTGTCGAGCCGGACT 61.252 55.000 5.05 0.50 37.81 3.85
4430 4802 1.444553 GAAGTGTCGAGCCGGACTG 60.445 63.158 5.05 0.00 37.81 3.51
4431 4803 3.575351 AAGTGTCGAGCCGGACTGC 62.575 63.158 5.05 0.00 37.81 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 3.260888 TCGTCCCCCAATGCCCAA 61.261 61.111 0.00 0.00 0.00 4.12
88 89 5.880332 GGTTTGAGATTACATGCTCCAGTAA 59.120 40.000 0.00 0.00 34.99 2.24
90 91 4.263462 TGGTTTGAGATTACATGCTCCAGT 60.263 41.667 0.00 0.00 0.00 4.00
178 179 6.067217 AGCCCACATTATAACAAGAACTCT 57.933 37.500 0.00 0.00 0.00 3.24
191 192 2.952702 GCCCACCAAATAGCCCACATTA 60.953 50.000 0.00 0.00 0.00 1.90
223 224 4.384940 TGAAACTCATTGTCGTGGATTGA 58.615 39.130 0.00 0.00 0.00 2.57
231 232 4.273480 AGTGGACTTTGAAACTCATTGTCG 59.727 41.667 0.00 0.00 33.11 4.35
262 263 5.516339 CCAAAAATCGCCTTATAAAGCACAG 59.484 40.000 6.85 0.00 0.00 3.66
265 266 5.163561 CCTCCAAAAATCGCCTTATAAAGCA 60.164 40.000 6.85 0.00 0.00 3.91
279 280 5.320277 GCTATATCCAGCTCCTCCAAAAAT 58.680 41.667 0.00 0.00 38.57 1.82
302 303 2.556287 GCGGTTTCTGTGCTTCGG 59.444 61.111 0.00 0.00 0.00 4.30
309 310 0.865769 GTGTTGATCGCGGTTTCTGT 59.134 50.000 6.13 0.00 0.00 3.41
312 313 0.165944 CTGGTGTTGATCGCGGTTTC 59.834 55.000 6.13 1.59 0.00 2.78
370 371 5.789643 TTTAGTTTTGCTGCTTCTCCATT 57.210 34.783 0.00 0.00 0.00 3.16
384 385 2.606065 GGCGCCGTCACAATTTAGTTTT 60.606 45.455 12.58 0.00 0.00 2.43
387 388 0.604243 TGGCGCCGTCACAATTTAGT 60.604 50.000 23.90 0.00 0.00 2.24
399 400 0.029300 CCATAGTTGAAATGGCGCCG 59.971 55.000 23.90 1.79 37.67 6.46
408 409 2.983192 TCCCTTGTCACCCATAGTTGAA 59.017 45.455 0.00 0.00 0.00 2.69
415 416 2.671070 CGCTCCCTTGTCACCCAT 59.329 61.111 0.00 0.00 0.00 4.00
458 459 2.953821 CGCCAAGAAACATGCCGT 59.046 55.556 0.00 0.00 0.00 5.68
459 460 2.476534 AAGCGCCAAGAAACATGCCG 62.477 55.000 2.29 0.00 0.00 5.69
490 491 1.687123 CGGGTCAGTTAATCCCTCGAT 59.313 52.381 0.00 0.00 39.10 3.59
498 499 1.153429 GCTCGCCGGGTCAGTTAAT 60.153 57.895 2.18 0.00 0.00 1.40
501 502 3.626924 AAGCTCGCCGGGTCAGTT 61.627 61.111 2.18 0.00 0.00 3.16
598 600 7.270779 TGATCAATGTTGGAGATCACTTCTAG 58.729 38.462 0.00 0.00 42.17 2.43
618 621 2.094442 CACTGGCATTGCATGTTGATCA 60.094 45.455 11.39 0.00 0.00 2.92
619 622 2.094390 ACACTGGCATTGCATGTTGATC 60.094 45.455 11.39 0.00 0.00 2.92
633 636 4.712425 ACCGACGCGTACACTGGC 62.712 66.667 13.97 0.00 0.00 4.85
732 735 1.593196 CTCCTTTTGCAACCGAGTGA 58.407 50.000 0.00 0.00 0.00 3.41
795 798 3.753272 CCGGAATACAAGCAATATCAGGG 59.247 47.826 0.00 0.00 0.00 4.45
865 868 2.561569 CTCCCAAAAGGTCGCGAATAT 58.438 47.619 12.06 0.00 36.75 1.28
866 869 1.406341 CCTCCCAAAAGGTCGCGAATA 60.406 52.381 12.06 0.00 36.75 1.75
867 870 0.676782 CCTCCCAAAAGGTCGCGAAT 60.677 55.000 12.06 0.00 36.75 3.34
868 871 1.302192 CCTCCCAAAAGGTCGCGAA 60.302 57.895 12.06 0.00 36.75 4.70
869 872 2.167398 CTCCTCCCAAAAGGTCGCGA 62.167 60.000 3.71 3.71 37.69 5.87
870 873 1.741770 CTCCTCCCAAAAGGTCGCG 60.742 63.158 0.00 0.00 37.69 5.87
871 874 1.377333 CCTCCTCCCAAAAGGTCGC 60.377 63.158 0.00 0.00 37.69 5.19
872 875 1.198759 TCCCTCCTCCCAAAAGGTCG 61.199 60.000 0.00 0.00 37.69 4.79
873 876 0.621082 CTCCCTCCTCCCAAAAGGTC 59.379 60.000 0.00 0.00 37.69 3.85
874 877 0.846870 CCTCCCTCCTCCCAAAAGGT 60.847 60.000 0.00 0.00 37.69 3.50
875 878 2.002625 CCTCCCTCCTCCCAAAAGG 58.997 63.158 0.00 0.00 37.81 3.11
876 879 1.304617 GCCTCCCTCCTCCCAAAAG 59.695 63.158 0.00 0.00 0.00 2.27
877 880 2.602676 CGCCTCCCTCCTCCCAAAA 61.603 63.158 0.00 0.00 0.00 2.44
878 881 3.009115 CGCCTCCCTCCTCCCAAA 61.009 66.667 0.00 0.00 0.00 3.28
883 886 4.779733 TGGTCCGCCTCCCTCCTC 62.780 72.222 0.00 0.00 35.27 3.71
1000 1003 2.435586 GCTCACGACTGCTGCCAT 60.436 61.111 0.00 0.00 0.00 4.40
1001 1004 3.619767 AGCTCACGACTGCTGCCA 61.620 61.111 0.00 0.00 38.21 4.92
1005 1008 1.587054 GTACCAGCTCACGACTGCT 59.413 57.895 0.00 0.00 40.54 4.24
1026 1029 2.583593 GACAGGTCGATCAGCGGC 60.584 66.667 0.00 0.00 45.73 6.53
1232 1237 1.378250 CCTGGGAAAGCAGAGGCAG 60.378 63.158 0.00 0.00 44.61 4.85
1236 1241 2.276732 TTGTTCCTGGGAAAGCAGAG 57.723 50.000 3.41 0.00 35.75 3.35
1261 1266 1.775039 TATACGTCCTTCCGGTCGCG 61.775 60.000 0.00 0.00 44.10 5.87
1264 1269 2.684881 TCTGTTATACGTCCTTCCGGTC 59.315 50.000 0.00 0.00 0.00 4.79
1280 1285 6.497259 TCACCAACCTCTAGAATAACTCTGTT 59.503 38.462 0.00 0.00 35.41 3.16
1294 1299 1.105167 TCGTGTCGTCACCAACCTCT 61.105 55.000 7.21 0.00 41.09 3.69
1351 1356 1.539065 CCAGCGATTATGGTCGAGCTT 60.539 52.381 16.64 12.19 44.06 3.74
1416 1421 8.512956 GGTAAAATTGAGGTTAAAAGAGAGACC 58.487 37.037 0.00 0.00 0.00 3.85
1417 1422 9.286170 AGGTAAAATTGAGGTTAAAAGAGAGAC 57.714 33.333 0.00 0.00 0.00 3.36
1426 1431 8.301002 GCATTACACAGGTAAAATTGAGGTTAA 58.699 33.333 0.00 0.00 42.43 2.01
1427 1432 7.668052 AGCATTACACAGGTAAAATTGAGGTTA 59.332 33.333 0.00 0.00 42.43 2.85
1428 1433 6.493458 AGCATTACACAGGTAAAATTGAGGTT 59.507 34.615 0.00 0.00 42.43 3.50
1429 1434 6.010219 AGCATTACACAGGTAAAATTGAGGT 58.990 36.000 0.00 0.00 42.43 3.85
1430 1435 6.515272 AGCATTACACAGGTAAAATTGAGG 57.485 37.500 0.00 0.00 42.43 3.86
1472 1477 5.142061 ACGTCTCACCATATGTTGTTACA 57.858 39.130 1.24 0.00 38.95 2.41
1473 1478 5.867716 AGAACGTCTCACCATATGTTGTTAC 59.132 40.000 1.24 0.52 0.00 2.50
1479 1810 3.422417 CGAGAACGTCTCACCATATGT 57.578 47.619 13.14 0.00 43.55 2.29
1642 1973 3.499918 CAGTAAAGACCAAAGAGCACCAG 59.500 47.826 0.00 0.00 0.00 4.00
1821 2153 1.135575 CGATTTCAAGAGCTGGCCAAC 60.136 52.381 7.01 0.92 0.00 3.77
1905 2238 3.636300 GCCCCACATAACAAGCAATATCA 59.364 43.478 0.00 0.00 0.00 2.15
1937 2270 7.798982 GCTCGAAAATAAATGTAGATGCTAACC 59.201 37.037 0.00 0.00 0.00 2.85
1938 2271 8.335356 TGCTCGAAAATAAATGTAGATGCTAAC 58.665 33.333 0.00 0.00 0.00 2.34
1960 2293 8.709386 TTTCTTCTAGACACAATTATCTGCTC 57.291 34.615 0.00 0.00 0.00 4.26
1996 2331 7.784550 AGCCCATGTGTTAAGTTATCCAATAAT 59.215 33.333 0.00 0.00 0.00 1.28
1997 2332 7.122715 AGCCCATGTGTTAAGTTATCCAATAA 58.877 34.615 0.00 0.00 0.00 1.40
1998 2333 6.668645 AGCCCATGTGTTAAGTTATCCAATA 58.331 36.000 0.00 0.00 0.00 1.90
1999 2334 5.518865 AGCCCATGTGTTAAGTTATCCAAT 58.481 37.500 0.00 0.00 0.00 3.16
2000 2335 4.929479 AGCCCATGTGTTAAGTTATCCAA 58.071 39.130 0.00 0.00 0.00 3.53
2040 2375 8.471457 CCGACTTTGCAATTAATTATGAATTCG 58.529 33.333 0.00 10.13 32.38 3.34
2058 2393 3.334691 TCTTGTAGCATTCCCGACTTTG 58.665 45.455 0.00 0.00 0.00 2.77
2177 2512 4.769688 TGCTACCTATCCAAATCACACTG 58.230 43.478 0.00 0.00 0.00 3.66
2181 2516 7.217200 TGTAGATTGCTACCTATCCAAATCAC 58.783 38.462 0.00 0.00 45.15 3.06
2299 2634 4.263462 ACAGGAGTGACATGCAAAGGATTA 60.263 41.667 0.00 0.00 33.22 1.75
2329 2664 7.554118 AGGTGTAATTGTGATGTAAGATGAAGG 59.446 37.037 0.00 0.00 0.00 3.46
2587 2926 5.913137 AGTAGTTCTGAGATGGACAAGAG 57.087 43.478 0.00 0.00 0.00 2.85
2850 3189 8.962884 TGACAAGCAGAGCAATATAGATTTTA 57.037 30.769 0.00 0.00 0.00 1.52
2892 3233 2.358267 GCCTCCATGAAGATTTCTGCAG 59.642 50.000 7.63 7.63 34.42 4.41
2912 3253 5.507985 GGGCAATCAATTGGATAAGTACTGC 60.508 44.000 5.42 0.00 38.21 4.40
2997 3338 2.024176 TTGAGGTTGGGTGCTAGAGA 57.976 50.000 0.00 0.00 0.00 3.10
2998 3339 2.224523 TGTTTGAGGTTGGGTGCTAGAG 60.225 50.000 0.00 0.00 0.00 2.43
2999 3340 1.771854 TGTTTGAGGTTGGGTGCTAGA 59.228 47.619 0.00 0.00 0.00 2.43
3000 3341 2.154462 CTGTTTGAGGTTGGGTGCTAG 58.846 52.381 0.00 0.00 0.00 3.42
3001 3342 1.493022 ACTGTTTGAGGTTGGGTGCTA 59.507 47.619 0.00 0.00 0.00 3.49
3002 3343 0.258774 ACTGTTTGAGGTTGGGTGCT 59.741 50.000 0.00 0.00 0.00 4.40
3003 3344 1.111277 AACTGTTTGAGGTTGGGTGC 58.889 50.000 0.00 0.00 0.00 5.01
3004 3345 3.023832 AGAAACTGTTTGAGGTTGGGTG 58.976 45.455 11.03 0.00 28.74 4.61
3005 3346 3.382083 AGAAACTGTTTGAGGTTGGGT 57.618 42.857 11.03 0.00 28.74 4.51
3006 3347 4.736126 AAAGAAACTGTTTGAGGTTGGG 57.264 40.909 11.03 0.00 28.74 4.12
3007 3348 5.478407 ACAAAAGAAACTGTTTGAGGTTGG 58.522 37.500 11.03 0.02 37.98 3.77
3008 3349 6.644592 TCAACAAAAGAAACTGTTTGAGGTTG 59.355 34.615 11.03 15.38 37.98 3.77
3009 3350 6.754193 TCAACAAAAGAAACTGTTTGAGGTT 58.246 32.000 11.03 5.28 37.98 3.50
3010 3351 6.339587 TCAACAAAAGAAACTGTTTGAGGT 57.660 33.333 11.03 0.00 37.98 3.85
3011 3352 7.650834 TTTCAACAAAAGAAACTGTTTGAGG 57.349 32.000 11.03 0.00 37.98 3.86
3107 3462 6.145535 CCTCTGCAACTTTATTCTTCACAAC 58.854 40.000 0.00 0.00 0.00 3.32
3218 3573 1.557269 ATCCCGGAAGTGCTTGAGCT 61.557 55.000 0.73 0.00 42.66 4.09
3219 3574 1.078143 ATCCCGGAAGTGCTTGAGC 60.078 57.895 0.73 0.00 42.50 4.26
3232 3587 0.602106 CAGTGCCATCTAGCATCCCG 60.602 60.000 0.00 0.00 46.24 5.14
3315 3670 4.340097 TCAGCAGGCATTTCATAAGAATGG 59.660 41.667 0.00 0.00 32.89 3.16
3320 3675 3.444742 TGGTTCAGCAGGCATTTCATAAG 59.555 43.478 0.00 0.00 0.00 1.73
3352 3707 5.045651 TGAAATCTGGAAGCAGAATGGACTA 60.046 40.000 0.00 0.00 35.86 2.59
3409 3764 6.258507 GCATTGTCAAAGAAACCAGTTCAAAT 59.741 34.615 0.00 0.00 38.86 2.32
3467 3822 4.215399 CCATTAGTTTGGTTCGACACATGT 59.785 41.667 0.00 0.00 31.74 3.21
3495 3850 6.599244 TCCCTTTTTGTAGATAGAAGCACATG 59.401 38.462 0.00 0.00 0.00 3.21
3566 3921 6.426937 GTGCTAAAACTGAAGAATACTGGTCA 59.573 38.462 0.00 0.00 0.00 4.02
3725 4085 0.899019 GATAGCCACCTAGCCTAGCC 59.101 60.000 0.00 0.00 0.00 3.93
3726 4086 1.931635 AGATAGCCACCTAGCCTAGC 58.068 55.000 0.00 0.00 30.25 3.42
3728 4088 3.366396 GCATAGATAGCCACCTAGCCTA 58.634 50.000 0.00 0.00 30.25 3.93
3729 4089 2.183679 GCATAGATAGCCACCTAGCCT 58.816 52.381 0.00 0.00 30.25 4.58
3730 4090 1.134965 CGCATAGATAGCCACCTAGCC 60.135 57.143 0.00 0.00 30.25 3.93
3731 4091 1.546476 ACGCATAGATAGCCACCTAGC 59.454 52.381 0.00 0.00 0.00 3.42
3732 4092 2.094494 CCACGCATAGATAGCCACCTAG 60.094 54.545 0.00 0.00 0.00 3.02
3733 4093 1.893137 CCACGCATAGATAGCCACCTA 59.107 52.381 0.00 0.00 0.00 3.08
3862 4229 1.457831 GAGATCCGGGGCTAGGTGT 60.458 63.158 0.00 0.00 0.00 4.16
3874 4241 1.146637 GATCGCACATGCAGAGATCC 58.853 55.000 16.54 4.66 42.21 3.36
3925 4292 3.515901 CCAGGTCTAGCTTCTGGTAAGTT 59.484 47.826 14.02 0.00 42.17 2.66
3957 4324 3.561725 GCTCTGTCGCTATTTTATTGCCT 59.438 43.478 0.00 0.00 0.00 4.75
3959 4326 3.312421 TGGCTCTGTCGCTATTTTATTGC 59.688 43.478 0.00 0.00 0.00 3.56
3998 4365 1.037493 ACCATAATGCGTCGCTCCTA 58.963 50.000 19.50 7.32 0.00 2.94
4036 4403 2.662006 TGTTTCTCAGAGCTGATCCG 57.338 50.000 0.00 0.00 39.13 4.18
4050 4422 8.774586 ACTTCTGTTGTATGAGTAACATGTTTC 58.225 33.333 17.78 12.01 39.77 2.78
4065 4437 5.518848 TGTCCGAAACTACTTCTGTTGTA 57.481 39.130 0.00 0.00 32.27 2.41
4066 4438 4.395959 TGTCCGAAACTACTTCTGTTGT 57.604 40.909 0.00 0.00 33.85 3.32
4067 4439 5.064198 TGTTTGTCCGAAACTACTTCTGTTG 59.936 40.000 0.00 0.00 31.20 3.33
4068 4440 5.180271 TGTTTGTCCGAAACTACTTCTGTT 58.820 37.500 0.00 0.00 31.20 3.16
4069 4441 4.761975 TGTTTGTCCGAAACTACTTCTGT 58.238 39.130 0.00 0.00 31.20 3.41
4070 4442 5.236478 ACATGTTTGTCCGAAACTACTTCTG 59.764 40.000 0.00 0.00 31.20 3.02
4071 4443 5.365619 ACATGTTTGTCCGAAACTACTTCT 58.634 37.500 0.00 0.00 31.20 2.85
4072 4444 5.668558 ACATGTTTGTCCGAAACTACTTC 57.331 39.130 0.00 0.00 0.00 3.01
4073 4445 6.764560 ACTAACATGTTTGTCCGAAACTACTT 59.235 34.615 17.78 0.00 34.06 2.24
4074 4446 6.285990 ACTAACATGTTTGTCCGAAACTACT 58.714 36.000 17.78 0.00 34.06 2.57
4075 4447 6.535274 ACTAACATGTTTGTCCGAAACTAC 57.465 37.500 17.78 0.00 34.06 2.73
4076 4448 7.436118 ACTACTAACATGTTTGTCCGAAACTA 58.564 34.615 25.44 8.07 34.06 2.24
4077 4449 6.285990 ACTACTAACATGTTTGTCCGAAACT 58.714 36.000 25.44 5.11 34.06 2.66
4078 4450 6.535274 ACTACTAACATGTTTGTCCGAAAC 57.465 37.500 25.44 0.00 34.06 2.78
4079 4451 7.556733 AAACTACTAACATGTTTGTCCGAAA 57.443 32.000 25.44 9.97 34.06 3.46
4080 4452 7.411274 CAAAACTACTAACATGTTTGTCCGAA 58.589 34.615 25.44 10.30 34.06 4.30
4081 4453 6.017770 CCAAAACTACTAACATGTTTGTCCGA 60.018 38.462 25.44 10.62 34.06 4.55
4082 4454 6.140110 CCAAAACTACTAACATGTTTGTCCG 58.860 40.000 25.44 19.78 34.06 4.79
4083 4455 7.012989 AGACCAAAACTACTAACATGTTTGTCC 59.987 37.037 25.44 6.27 34.06 4.02
4084 4456 7.927048 AGACCAAAACTACTAACATGTTTGTC 58.073 34.615 25.44 10.69 34.06 3.18
4085 4457 7.875327 AGACCAAAACTACTAACATGTTTGT 57.125 32.000 25.12 25.12 37.82 2.83
4086 4458 9.581099 AAAAGACCAAAACTACTAACATGTTTG 57.419 29.630 17.78 17.30 34.63 2.93
4087 4459 9.581099 CAAAAGACCAAAACTACTAACATGTTT 57.419 29.630 17.78 1.74 35.71 2.83
4088 4460 8.745590 ACAAAAGACCAAAACTACTAACATGTT 58.254 29.630 16.68 16.68 0.00 2.71
4089 4461 8.288689 ACAAAAGACCAAAACTACTAACATGT 57.711 30.769 0.00 0.00 0.00 3.21
4090 4462 8.402472 TGACAAAAGACCAAAACTACTAACATG 58.598 33.333 0.00 0.00 0.00 3.21
4091 4463 8.514330 TGACAAAAGACCAAAACTACTAACAT 57.486 30.769 0.00 0.00 0.00 2.71
4092 4464 7.925043 TGACAAAAGACCAAAACTACTAACA 57.075 32.000 0.00 0.00 0.00 2.41
4093 4465 9.233232 CATTGACAAAAGACCAAAACTACTAAC 57.767 33.333 0.00 0.00 0.00 2.34
4094 4466 8.962679 ACATTGACAAAAGACCAAAACTACTAA 58.037 29.630 0.00 0.00 0.00 2.24
4095 4467 8.514330 ACATTGACAAAAGACCAAAACTACTA 57.486 30.769 0.00 0.00 0.00 1.82
4096 4468 7.404671 ACATTGACAAAAGACCAAAACTACT 57.595 32.000 0.00 0.00 0.00 2.57
4113 4485 4.814234 TGATGGCGGAGTAATAACATTGAC 59.186 41.667 0.00 0.00 0.00 3.18
4114 4486 5.029807 TGATGGCGGAGTAATAACATTGA 57.970 39.130 0.00 0.00 0.00 2.57
4116 4488 6.119536 TCTTTGATGGCGGAGTAATAACATT 58.880 36.000 0.00 0.00 0.00 2.71
4118 4490 5.092554 TCTTTGATGGCGGAGTAATAACA 57.907 39.130 0.00 0.00 0.00 2.41
4119 4491 6.431198 TTTCTTTGATGGCGGAGTAATAAC 57.569 37.500 0.00 0.00 0.00 1.89
4120 4492 5.065988 GCTTTCTTTGATGGCGGAGTAATAA 59.934 40.000 0.00 0.00 0.00 1.40
4121 4493 4.574828 GCTTTCTTTGATGGCGGAGTAATA 59.425 41.667 0.00 0.00 0.00 0.98
4122 4494 3.378427 GCTTTCTTTGATGGCGGAGTAAT 59.622 43.478 0.00 0.00 0.00 1.89
4123 4495 2.747446 GCTTTCTTTGATGGCGGAGTAA 59.253 45.455 0.00 0.00 0.00 2.24
4124 4496 2.027192 AGCTTTCTTTGATGGCGGAGTA 60.027 45.455 0.00 0.00 0.00 2.59
4128 4500 1.403249 CCAAGCTTTCTTTGATGGCGG 60.403 52.381 0.00 0.00 0.00 6.13
4130 4502 3.391506 AACCAAGCTTTCTTTGATGGC 57.608 42.857 0.00 0.00 0.00 4.40
4131 4503 6.308766 CGATAAAACCAAGCTTTCTTTGATGG 59.691 38.462 0.00 0.00 0.00 3.51
4132 4504 6.308766 CCGATAAAACCAAGCTTTCTTTGATG 59.691 38.462 0.00 0.00 0.00 3.07
4133 4505 6.208599 TCCGATAAAACCAAGCTTTCTTTGAT 59.791 34.615 0.00 0.00 0.00 2.57
4134 4506 5.533154 TCCGATAAAACCAAGCTTTCTTTGA 59.467 36.000 0.00 0.00 0.00 2.69
4135 4507 5.768317 TCCGATAAAACCAAGCTTTCTTTG 58.232 37.500 0.00 0.00 0.00 2.77
4137 4509 5.535030 ACTTCCGATAAAACCAAGCTTTCTT 59.465 36.000 0.00 0.00 0.00 2.52
4140 4512 5.784578 AACTTCCGATAAAACCAAGCTTT 57.215 34.783 0.00 0.00 0.00 3.51
4141 4513 5.784578 AAACTTCCGATAAAACCAAGCTT 57.215 34.783 0.00 0.00 0.00 3.74
4142 4514 5.562113 CGAAAACTTCCGATAAAACCAAGCT 60.562 40.000 0.00 0.00 0.00 3.74
4143 4515 4.615541 CGAAAACTTCCGATAAAACCAAGC 59.384 41.667 0.00 0.00 0.00 4.01
4144 4516 5.754778 ACGAAAACTTCCGATAAAACCAAG 58.245 37.500 0.00 0.00 0.00 3.61
4145 4517 5.558653 CGACGAAAACTTCCGATAAAACCAA 60.559 40.000 0.00 0.00 0.00 3.67
4146 4518 4.084433 CGACGAAAACTTCCGATAAAACCA 60.084 41.667 0.00 0.00 0.00 3.67
4147 4519 4.388790 CGACGAAAACTTCCGATAAAACC 58.611 43.478 0.00 0.00 0.00 3.27
4148 4520 4.388790 CCGACGAAAACTTCCGATAAAAC 58.611 43.478 0.00 0.00 0.00 2.43
4149 4521 3.432933 CCCGACGAAAACTTCCGATAAAA 59.567 43.478 0.00 0.00 0.00 1.52
4150 4522 2.995258 CCCGACGAAAACTTCCGATAAA 59.005 45.455 0.00 0.00 0.00 1.40
4151 4523 2.230992 TCCCGACGAAAACTTCCGATAA 59.769 45.455 0.00 0.00 0.00 1.75
4152 4524 1.818060 TCCCGACGAAAACTTCCGATA 59.182 47.619 0.00 0.00 0.00 2.92
4153 4525 0.604578 TCCCGACGAAAACTTCCGAT 59.395 50.000 0.00 0.00 0.00 4.18
4154 4526 0.388659 TTCCCGACGAAAACTTCCGA 59.611 50.000 0.00 0.00 0.00 4.55
4155 4527 1.219646 TTTCCCGACGAAAACTTCCG 58.780 50.000 0.00 0.00 37.53 4.30
4175 4547 4.289934 TGGGGAAAACCAACCTTTCTTTTT 59.710 37.500 0.00 0.00 42.91 1.94
4176 4548 3.847184 TGGGGAAAACCAACCTTTCTTTT 59.153 39.130 0.00 0.00 42.91 2.27
4177 4549 3.199071 GTGGGGAAAACCAACCTTTCTTT 59.801 43.478 0.00 0.00 43.34 2.52
4178 4550 2.769663 GTGGGGAAAACCAACCTTTCTT 59.230 45.455 0.00 0.00 43.34 2.52
4179 4551 2.023404 AGTGGGGAAAACCAACCTTTCT 60.023 45.455 0.00 0.00 45.13 2.52
4180 4552 2.394632 AGTGGGGAAAACCAACCTTTC 58.605 47.619 0.00 0.00 45.13 2.62
4181 4553 2.561209 AGTGGGGAAAACCAACCTTT 57.439 45.000 0.00 0.00 45.13 3.11
4182 4554 2.292587 TGAAGTGGGGAAAACCAACCTT 60.293 45.455 0.00 0.00 45.13 3.50
4183 4555 1.289530 TGAAGTGGGGAAAACCAACCT 59.710 47.619 0.00 0.00 45.13 3.50
4184 4556 1.783071 TGAAGTGGGGAAAACCAACC 58.217 50.000 0.00 0.00 45.13 3.77
4185 4557 3.897141 TTTGAAGTGGGGAAAACCAAC 57.103 42.857 0.00 0.00 44.26 3.77
4186 4558 4.910458 TTTTTGAAGTGGGGAAAACCAA 57.090 36.364 0.00 0.00 43.34 3.67
4205 4577 7.718334 TTTGAGGGAAACTCTTCTTCTTTTT 57.282 32.000 0.00 0.00 46.72 1.94
4206 4578 7.718334 TTTTGAGGGAAACTCTTCTTCTTTT 57.282 32.000 0.00 0.00 46.72 2.27
4207 4579 7.718334 TTTTTGAGGGAAACTCTTCTTCTTT 57.282 32.000 0.00 0.00 46.72 2.52
4242 4614 3.374988 GCAAAACCAAGCTGCTTCTTTTT 59.625 39.130 12.82 16.29 33.20 1.94
4243 4615 2.938451 GCAAAACCAAGCTGCTTCTTTT 59.062 40.909 12.82 15.02 33.20 2.27
4244 4616 2.554142 GCAAAACCAAGCTGCTTCTTT 58.446 42.857 12.82 9.99 33.20 2.52
4245 4617 1.202568 GGCAAAACCAAGCTGCTTCTT 60.203 47.619 12.82 3.98 38.86 2.52
4246 4618 0.390492 GGCAAAACCAAGCTGCTTCT 59.610 50.000 12.82 0.00 38.86 2.85
4247 4619 0.390492 AGGCAAAACCAAGCTGCTTC 59.610 50.000 12.82 0.00 43.14 3.86
4248 4620 0.390492 GAGGCAAAACCAAGCTGCTT 59.610 50.000 9.53 9.53 43.14 3.91
4249 4621 1.466851 GGAGGCAAAACCAAGCTGCT 61.467 55.000 0.00 0.00 43.14 4.24
4250 4622 1.005748 GGAGGCAAAACCAAGCTGC 60.006 57.895 0.00 0.00 43.14 5.25
4251 4623 1.667722 GGGAGGCAAAACCAAGCTG 59.332 57.895 0.00 0.00 43.14 4.24
4273 4645 0.823356 AGCAAGGCCTTCTTTGCGAA 60.823 50.000 17.29 0.00 35.86 4.70
4309 4681 2.159099 TGTGACCATAGGCTAGCGAAAG 60.159 50.000 9.00 0.00 0.00 2.62
4310 4682 1.828595 TGTGACCATAGGCTAGCGAAA 59.171 47.619 9.00 0.00 0.00 3.46
4313 4685 2.533266 ATTGTGACCATAGGCTAGCG 57.467 50.000 9.00 0.00 0.00 4.26
4315 4687 5.527582 GGTAACAATTGTGACCATAGGCTAG 59.472 44.000 32.47 0.00 46.80 3.42
4317 4689 4.270008 GGTAACAATTGTGACCATAGGCT 58.730 43.478 32.47 8.52 46.80 4.58
4318 4690 4.632538 GGTAACAATTGTGACCATAGGC 57.367 45.455 32.47 10.39 46.80 3.93
4362 4734 3.040147 TGTATGGGCTCGCTATTAAGC 57.960 47.619 0.00 0.00 45.86 3.09
4363 4735 4.883083 TCTTGTATGGGCTCGCTATTAAG 58.117 43.478 0.00 0.00 0.00 1.85
4364 4736 4.262463 CCTCTTGTATGGGCTCGCTATTAA 60.262 45.833 0.00 0.00 0.00 1.40
4365 4737 3.258372 CCTCTTGTATGGGCTCGCTATTA 59.742 47.826 0.00 0.00 0.00 0.98
4366 4738 2.037772 CCTCTTGTATGGGCTCGCTATT 59.962 50.000 0.00 0.00 0.00 1.73
4367 4739 1.620819 CCTCTTGTATGGGCTCGCTAT 59.379 52.381 0.00 0.00 0.00 2.97
4368 4740 1.040646 CCTCTTGTATGGGCTCGCTA 58.959 55.000 0.00 0.00 0.00 4.26
4369 4741 1.690219 CCCTCTTGTATGGGCTCGCT 61.690 60.000 0.00 0.00 36.61 4.93
4370 4742 1.227674 CCCTCTTGTATGGGCTCGC 60.228 63.158 0.00 0.00 36.61 5.03
4375 4747 1.146263 GGACGCCCTCTTGTATGGG 59.854 63.158 0.00 0.00 46.00 4.00
4376 4748 0.469917 ATGGACGCCCTCTTGTATGG 59.530 55.000 0.00 0.00 0.00 2.74
4377 4749 1.138859 TCATGGACGCCCTCTTGTATG 59.861 52.381 0.00 0.00 0.00 2.39
4378 4750 1.496060 TCATGGACGCCCTCTTGTAT 58.504 50.000 0.00 0.00 0.00 2.29
4379 4751 1.496060 ATCATGGACGCCCTCTTGTA 58.504 50.000 0.00 0.00 0.00 2.41
4380 4752 1.496060 TATCATGGACGCCCTCTTGT 58.504 50.000 0.00 0.00 0.00 3.16
4381 4753 2.103094 TCTTATCATGGACGCCCTCTTG 59.897 50.000 0.00 0.00 0.00 3.02
4382 4754 2.366916 CTCTTATCATGGACGCCCTCTT 59.633 50.000 0.00 0.00 0.00 2.85
4383 4755 1.967066 CTCTTATCATGGACGCCCTCT 59.033 52.381 0.00 0.00 0.00 3.69
4384 4756 1.964223 TCTCTTATCATGGACGCCCTC 59.036 52.381 0.00 0.00 0.00 4.30
4385 4757 2.088104 TCTCTTATCATGGACGCCCT 57.912 50.000 0.00 0.00 0.00 5.19
4386 4758 2.613977 CCATCTCTTATCATGGACGCCC 60.614 54.545 0.00 0.00 42.11 6.13
4387 4759 2.300152 TCCATCTCTTATCATGGACGCC 59.700 50.000 0.00 0.00 43.11 5.68
4388 4760 3.256879 TCTCCATCTCTTATCATGGACGC 59.743 47.826 0.00 0.00 43.11 5.19
4389 4761 5.184671 TCATCTCCATCTCTTATCATGGACG 59.815 44.000 0.00 0.00 43.11 4.79
4390 4762 6.602410 TCATCTCCATCTCTTATCATGGAC 57.398 41.667 0.00 0.00 43.11 4.02
4391 4763 6.786461 ACTTCATCTCCATCTCTTATCATGGA 59.214 38.462 0.84 0.84 45.32 3.41
4392 4764 6.874664 CACTTCATCTCCATCTCTTATCATGG 59.125 42.308 0.00 0.00 41.04 3.66
4393 4765 7.443477 ACACTTCATCTCCATCTCTTATCATG 58.557 38.462 0.00 0.00 0.00 3.07
4394 4766 7.523544 CGACACTTCATCTCCATCTCTTATCAT 60.524 40.741 0.00 0.00 0.00 2.45
4398 4770 5.193679 TCGACACTTCATCTCCATCTCTTA 58.806 41.667 0.00 0.00 0.00 2.10
4407 4779 0.526524 CCGGCTCGACACTTCATCTC 60.527 60.000 0.00 0.00 0.00 2.75
4426 4798 3.106407 GTCTGACCGCACGCAGTC 61.106 66.667 0.00 0.00 41.61 3.51
4428 4800 2.661537 TTGTCTGACCGCACGCAG 60.662 61.111 5.17 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.