Multiple sequence alignment - TraesCS2A01G317900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G317900 chr2A 100.000 4136 0 0 1 4136 543181387 543185522 0.000000e+00 7638
1 TraesCS2A01G317900 chr2B 89.395 1952 151 20 1325 3245 480067475 480069401 0.000000e+00 2407
2 TraesCS2A01G317900 chr2B 88.889 720 33 11 638 1324 480066722 480067427 0.000000e+00 843
3 TraesCS2A01G317900 chr2B 93.373 166 10 1 3245 3409 461737541 461737376 1.150000e-60 244
4 TraesCS2A01G317900 chr2B 92.593 81 6 0 3441 3521 480069422 480069502 2.610000e-22 117
5 TraesCS2A01G317900 chr2D 89.194 1564 119 21 1325 2862 405179876 405181415 0.000000e+00 1906
6 TraesCS2A01G317900 chr2D 86.846 669 27 14 638 1266 405179115 405179762 0.000000e+00 691
7 TraesCS2A01G317900 chr2D 91.162 396 24 4 2852 3245 405181592 405181978 1.020000e-145 527
8 TraesCS2A01G317900 chr2D 92.045 176 11 3 3245 3418 161907016 161906842 1.150000e-60 244
9 TraesCS2A01G317900 chr2D 88.947 190 19 2 3236 3423 96085247 96085436 2.490000e-57 233
10 TraesCS2A01G317900 chr2D 96.040 101 4 0 3407 3507 405181975 405182075 9.200000e-37 165
11 TraesCS2A01G317900 chr2D 83.871 155 25 0 147 301 405174820 405174974 9.260000e-32 148
12 TraesCS2A01G317900 chr5A 92.601 419 31 0 3616 4034 271056857 271057275 1.640000e-168 603
13 TraesCS2A01G317900 chr5A 90.265 226 22 0 3547 3772 271056629 271056854 3.130000e-76 296
14 TraesCS2A01G317900 chr6A 92.124 419 33 0 3616 4034 612172130 612172548 3.560000e-165 592
15 TraesCS2A01G317900 chr6A 82.933 416 43 10 3622 4035 594521350 594520961 2.370000e-92 350
16 TraesCS2A01G317900 chr6A 89.958 239 24 0 3534 3772 612171889 612172127 4.020000e-80 309
17 TraesCS2A01G317900 chr6A 87.500 112 13 1 4024 4135 612172572 612172682 1.210000e-25 128
18 TraesCS2A01G317900 chr4D 89.499 419 42 2 3616 4034 418565171 418564755 2.830000e-146 529
19 TraesCS2A01G317900 chr4D 90.860 186 13 3 3225 3409 93338025 93338207 3.190000e-61 246
20 TraesCS2A01G317900 chr1D 90.141 355 35 0 3617 3971 370309845 370310199 2.910000e-126 462
21 TraesCS2A01G317900 chr1D 90.602 266 22 2 3771 4034 52612763 52612499 2.370000e-92 350
22 TraesCS2A01G317900 chr1D 92.982 171 10 2 3239 3408 238940385 238940216 8.880000e-62 248
23 TraesCS2A01G317900 chr4B 88.095 378 45 0 3618 3995 646661610 646661233 2.270000e-122 449
24 TraesCS2A01G317900 chr4A 86.288 423 40 4 3629 4034 627975570 627975991 1.060000e-120 444
25 TraesCS2A01G317900 chr6D 85.287 435 47 7 3616 4034 469073348 469073781 2.280000e-117 433
26 TraesCS2A01G317900 chr7A 82.063 446 56 8 3613 4034 676426055 676426500 3.930000e-95 359
27 TraesCS2A01G317900 chr7A 83.871 341 39 9 1426 1756 720951138 720950804 1.120000e-80 311
28 TraesCS2A01G317900 chr7A 91.954 174 14 0 3236 3409 671188431 671188258 1.150000e-60 244
29 TraesCS2A01G317900 chrUn 76.233 669 114 29 2408 3073 28775861 28775235 3.100000e-81 313
30 TraesCS2A01G317900 chr7B 93.567 171 9 2 3245 3414 92046022 92045853 1.910000e-63 254
31 TraesCS2A01G317900 chr5D 92.982 171 10 2 3240 3409 274578180 274578011 8.880000e-62 248
32 TraesCS2A01G317900 chr1A 92.899 169 12 0 3240 3408 538381788 538381620 3.190000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G317900 chr2A 543181387 543185522 4135 False 7638.000000 7638 100.000000 1 4136 1 chr2A.!!$F1 4135
1 TraesCS2A01G317900 chr2B 480066722 480069502 2780 False 1122.333333 2407 90.292333 638 3521 3 chr2B.!!$F1 2883
2 TraesCS2A01G317900 chr2D 405179115 405182075 2960 False 822.250000 1906 90.810500 638 3507 4 chr2D.!!$F3 2869
3 TraesCS2A01G317900 chr5A 271056629 271057275 646 False 449.500000 603 91.433000 3547 4034 2 chr5A.!!$F1 487
4 TraesCS2A01G317900 chr6A 612171889 612172682 793 False 343.000000 592 89.860667 3534 4135 3 chr6A.!!$F1 601
5 TraesCS2A01G317900 chrUn 28775235 28775861 626 True 313.000000 313 76.233000 2408 3073 1 chrUn.!!$R1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.026674 CACATTCCGTGCATAGCGTG 59.973 55.0 0.00 0.0 39.19 5.34 F
294 295 0.103208 CTCGAATCTTAGCGGGCACT 59.897 55.0 0.00 0.0 0.00 4.40 F
636 637 0.517316 AAGTTTCTGGAATCACGCGC 59.483 50.0 5.73 0.0 0.00 6.86 F
2058 2176 0.107831 TTCCAGCCGGCATGTATACC 59.892 55.0 31.54 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1074 1115 0.179065 CCTGCTTCCGCATGATCTCA 60.179 55.0 0.00 0.0 46.74 3.27 R
1981 2097 0.964358 CCAAGGAAGCAGCTGGGAAG 60.964 60.0 17.12 0.0 0.00 3.46 R
2470 2607 1.012486 GGTCCCGTGTTACTTGCTCG 61.012 60.0 0.00 0.0 0.00 5.03 R
3347 3673 0.034574 AAATGGCTACCACATGCGGA 60.035 50.0 6.80 0.0 35.80 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.219484 AGATATGTTCTTGTTTTTCCAGTGG 57.781 36.000 1.40 1.40 0.00 4.00
29 30 7.004086 AGATATGTTCTTGTTTTTCCAGTGGA 58.996 34.615 8.12 8.12 0.00 4.02
30 31 4.712122 TGTTCTTGTTTTTCCAGTGGAC 57.288 40.909 12.69 0.89 0.00 4.02
31 32 4.082845 TGTTCTTGTTTTTCCAGTGGACA 58.917 39.130 12.69 1.49 0.00 4.02
32 33 4.709397 TGTTCTTGTTTTTCCAGTGGACAT 59.291 37.500 12.69 0.00 0.00 3.06
33 34 4.916983 TCTTGTTTTTCCAGTGGACATG 57.083 40.909 12.69 9.57 0.00 3.21
34 35 4.531854 TCTTGTTTTTCCAGTGGACATGA 58.468 39.130 12.69 11.75 0.00 3.07
35 36 5.139727 TCTTGTTTTTCCAGTGGACATGAT 58.860 37.500 12.69 0.00 0.00 2.45
36 37 6.303054 TCTTGTTTTTCCAGTGGACATGATA 58.697 36.000 12.69 0.00 0.00 2.15
37 38 5.957842 TGTTTTTCCAGTGGACATGATAC 57.042 39.130 12.69 5.34 0.00 2.24
38 39 4.454161 TGTTTTTCCAGTGGACATGATACG 59.546 41.667 12.69 0.00 0.00 3.06
39 40 3.973206 TTTCCAGTGGACATGATACGT 57.027 42.857 12.69 0.00 0.00 3.57
40 41 3.973206 TTCCAGTGGACATGATACGTT 57.027 42.857 12.69 0.00 0.00 3.99
41 42 3.973206 TCCAGTGGACATGATACGTTT 57.027 42.857 8.12 0.00 0.00 3.60
42 43 4.280436 TCCAGTGGACATGATACGTTTT 57.720 40.909 8.12 0.00 0.00 2.43
43 44 4.000325 TCCAGTGGACATGATACGTTTTG 59.000 43.478 8.12 0.00 0.00 2.44
44 45 3.751175 CCAGTGGACATGATACGTTTTGT 59.249 43.478 1.68 0.00 0.00 2.83
45 46 4.215399 CCAGTGGACATGATACGTTTTGTT 59.785 41.667 1.68 0.00 0.00 2.83
46 47 5.146460 CAGTGGACATGATACGTTTTGTTG 58.854 41.667 0.00 0.00 0.00 3.33
47 48 3.911964 GTGGACATGATACGTTTTGTTGC 59.088 43.478 0.00 0.00 0.00 4.17
48 49 3.057876 TGGACATGATACGTTTTGTTGCC 60.058 43.478 0.00 0.00 0.00 4.52
49 50 3.057876 GGACATGATACGTTTTGTTGCCA 60.058 43.478 0.00 0.00 0.00 4.92
50 51 4.541779 GACATGATACGTTTTGTTGCCAA 58.458 39.130 0.00 0.00 0.00 4.52
51 52 5.132897 ACATGATACGTTTTGTTGCCAAT 57.867 34.783 0.00 0.00 0.00 3.16
52 53 5.160641 ACATGATACGTTTTGTTGCCAATC 58.839 37.500 0.00 0.00 0.00 2.67
53 54 5.048083 ACATGATACGTTTTGTTGCCAATCT 60.048 36.000 0.00 0.00 0.00 2.40
54 55 5.446143 TGATACGTTTTGTTGCCAATCTT 57.554 34.783 0.00 0.00 0.00 2.40
55 56 5.457140 TGATACGTTTTGTTGCCAATCTTC 58.543 37.500 0.00 0.00 0.00 2.87
56 57 5.240623 TGATACGTTTTGTTGCCAATCTTCT 59.759 36.000 0.00 0.00 0.00 2.85
57 58 6.428465 TGATACGTTTTGTTGCCAATCTTCTA 59.572 34.615 0.00 0.00 0.00 2.10
58 59 4.855531 ACGTTTTGTTGCCAATCTTCTAC 58.144 39.130 0.00 0.00 0.00 2.59
59 60 4.336993 ACGTTTTGTTGCCAATCTTCTACA 59.663 37.500 0.00 0.00 0.00 2.74
60 61 4.675114 CGTTTTGTTGCCAATCTTCTACAC 59.325 41.667 0.00 0.00 0.00 2.90
61 62 5.587289 GTTTTGTTGCCAATCTTCTACACA 58.413 37.500 0.00 0.00 0.00 3.72
62 63 5.843673 TTTGTTGCCAATCTTCTACACAA 57.156 34.783 0.00 0.00 0.00 3.33
63 64 5.843673 TTGTTGCCAATCTTCTACACAAA 57.156 34.783 0.00 0.00 0.00 2.83
64 65 6.403866 TTGTTGCCAATCTTCTACACAAAT 57.596 33.333 0.00 0.00 0.00 2.32
65 66 7.517614 TTGTTGCCAATCTTCTACACAAATA 57.482 32.000 0.00 0.00 0.00 1.40
66 67 6.908825 TGTTGCCAATCTTCTACACAAATAC 58.091 36.000 0.00 0.00 0.00 1.89
67 68 6.488344 TGTTGCCAATCTTCTACACAAATACA 59.512 34.615 0.00 0.00 0.00 2.29
68 69 6.494893 TGCCAATCTTCTACACAAATACAC 57.505 37.500 0.00 0.00 0.00 2.90
69 70 5.414454 TGCCAATCTTCTACACAAATACACC 59.586 40.000 0.00 0.00 0.00 4.16
70 71 5.447279 GCCAATCTTCTACACAAATACACCG 60.447 44.000 0.00 0.00 0.00 4.94
71 72 5.872617 CCAATCTTCTACACAAATACACCGA 59.127 40.000 0.00 0.00 0.00 4.69
72 73 6.538742 CCAATCTTCTACACAAATACACCGAT 59.461 38.462 0.00 0.00 0.00 4.18
73 74 7.401860 CAATCTTCTACACAAATACACCGATG 58.598 38.462 0.00 0.00 0.00 3.84
74 75 6.275494 TCTTCTACACAAATACACCGATGA 57.725 37.500 0.00 0.00 0.00 2.92
75 76 6.693466 TCTTCTACACAAATACACCGATGAA 58.307 36.000 0.00 0.00 0.00 2.57
76 77 6.588756 TCTTCTACACAAATACACCGATGAAC 59.411 38.462 0.00 0.00 0.00 3.18
77 78 5.785243 TCTACACAAATACACCGATGAACA 58.215 37.500 0.00 0.00 0.00 3.18
78 79 6.403049 TCTACACAAATACACCGATGAACAT 58.597 36.000 0.00 0.00 0.00 2.71
79 80 5.295431 ACACAAATACACCGATGAACATG 57.705 39.130 0.00 0.00 0.00 3.21
80 81 4.155826 ACACAAATACACCGATGAACATGG 59.844 41.667 0.00 0.00 0.00 3.66
81 82 3.694072 ACAAATACACCGATGAACATGGG 59.306 43.478 12.91 12.91 41.74 4.00
83 84 3.644966 ATACACCGATGAACATGGGTT 57.355 42.857 16.54 11.57 45.87 4.11
84 85 1.821216 ACACCGATGAACATGGGTTC 58.179 50.000 16.54 0.79 45.87 3.62
101 102 4.546829 GGTTCATACACACCCTACTGAA 57.453 45.455 0.00 0.00 0.00 3.02
102 103 5.099042 GGTTCATACACACCCTACTGAAT 57.901 43.478 0.00 0.00 0.00 2.57
103 104 5.497474 GGTTCATACACACCCTACTGAATT 58.503 41.667 0.00 0.00 0.00 2.17
104 105 5.354234 GGTTCATACACACCCTACTGAATTG 59.646 44.000 0.00 0.00 0.00 2.32
105 106 5.755409 TCATACACACCCTACTGAATTGT 57.245 39.130 0.00 0.00 0.00 2.71
106 107 6.121776 TCATACACACCCTACTGAATTGTT 57.878 37.500 0.00 0.00 0.00 2.83
107 108 7.247456 TCATACACACCCTACTGAATTGTTA 57.753 36.000 0.00 0.00 0.00 2.41
108 109 7.681679 TCATACACACCCTACTGAATTGTTAA 58.318 34.615 0.00 0.00 0.00 2.01
109 110 8.158132 TCATACACACCCTACTGAATTGTTAAA 58.842 33.333 0.00 0.00 0.00 1.52
110 111 8.956426 CATACACACCCTACTGAATTGTTAAAT 58.044 33.333 0.00 0.00 0.00 1.40
111 112 7.448748 ACACACCCTACTGAATTGTTAAATC 57.551 36.000 0.00 0.00 0.00 2.17
112 113 7.231467 ACACACCCTACTGAATTGTTAAATCT 58.769 34.615 0.00 0.00 0.00 2.40
113 114 8.380099 ACACACCCTACTGAATTGTTAAATCTA 58.620 33.333 0.00 0.00 0.00 1.98
114 115 9.396022 CACACCCTACTGAATTGTTAAATCTAT 57.604 33.333 0.00 0.00 0.00 1.98
162 163 8.202137 TGTTTTAACATACATAGTCCTAGAGGC 58.798 37.037 0.00 0.00 33.17 4.70
163 164 8.422566 GTTTTAACATACATAGTCCTAGAGGCT 58.577 37.037 0.00 0.00 34.44 4.58
164 165 8.548880 TTTAACATACATAGTCCTAGAGGCTT 57.451 34.615 0.00 0.00 34.44 4.35
165 166 9.650714 TTTAACATACATAGTCCTAGAGGCTTA 57.349 33.333 0.00 0.00 34.44 3.09
166 167 7.527568 AACATACATAGTCCTAGAGGCTTAC 57.472 40.000 0.00 0.00 34.44 2.34
167 168 6.854578 ACATACATAGTCCTAGAGGCTTACT 58.145 40.000 0.00 0.00 34.44 2.24
168 169 6.943718 ACATACATAGTCCTAGAGGCTTACTC 59.056 42.308 0.00 0.00 46.98 2.59
177 178 2.674796 GAGGCTTACTCACGATTGGT 57.325 50.000 0.00 0.00 45.85 3.67
178 179 2.973945 GAGGCTTACTCACGATTGGTT 58.026 47.619 0.00 0.00 45.85 3.67
179 180 4.119442 GAGGCTTACTCACGATTGGTTA 57.881 45.455 0.00 0.00 45.85 2.85
180 181 4.694339 GAGGCTTACTCACGATTGGTTAT 58.306 43.478 0.00 0.00 45.85 1.89
181 182 4.442706 AGGCTTACTCACGATTGGTTATG 58.557 43.478 0.00 0.00 0.00 1.90
182 183 4.081087 AGGCTTACTCACGATTGGTTATGT 60.081 41.667 0.00 0.00 0.00 2.29
183 184 4.270325 GGCTTACTCACGATTGGTTATGTC 59.730 45.833 0.00 0.00 0.00 3.06
184 185 4.026804 GCTTACTCACGATTGGTTATGTCG 60.027 45.833 0.00 0.00 40.91 4.35
186 187 3.508762 ACTCACGATTGGTTATGTCGTC 58.491 45.455 0.00 0.00 45.72 4.20
187 188 2.858344 CTCACGATTGGTTATGTCGTCC 59.142 50.000 0.00 0.00 45.72 4.79
188 189 2.494471 TCACGATTGGTTATGTCGTCCT 59.506 45.455 0.00 0.00 45.72 3.85
189 190 3.056393 TCACGATTGGTTATGTCGTCCTT 60.056 43.478 0.00 0.00 45.72 3.36
190 191 3.306166 CACGATTGGTTATGTCGTCCTTC 59.694 47.826 0.00 0.00 45.72 3.46
191 192 3.056393 ACGATTGGTTATGTCGTCCTTCA 60.056 43.478 0.00 0.00 44.39 3.02
192 193 3.930229 CGATTGGTTATGTCGTCCTTCAA 59.070 43.478 0.00 0.00 0.00 2.69
193 194 4.201685 CGATTGGTTATGTCGTCCTTCAAC 60.202 45.833 0.00 0.00 0.00 3.18
194 195 4.345859 TTGGTTATGTCGTCCTTCAACT 57.654 40.909 0.00 0.00 0.00 3.16
195 196 4.345859 TGGTTATGTCGTCCTTCAACTT 57.654 40.909 0.00 0.00 0.00 2.66
196 197 4.710324 TGGTTATGTCGTCCTTCAACTTT 58.290 39.130 0.00 0.00 0.00 2.66
197 198 5.856156 TGGTTATGTCGTCCTTCAACTTTA 58.144 37.500 0.00 0.00 0.00 1.85
198 199 5.929992 TGGTTATGTCGTCCTTCAACTTTAG 59.070 40.000 0.00 0.00 0.00 1.85
199 200 6.161381 GGTTATGTCGTCCTTCAACTTTAGA 58.839 40.000 0.00 0.00 0.00 2.10
200 201 6.647895 GGTTATGTCGTCCTTCAACTTTAGAA 59.352 38.462 0.00 0.00 0.00 2.10
201 202 7.333672 GGTTATGTCGTCCTTCAACTTTAGAAT 59.666 37.037 0.00 0.00 0.00 2.40
202 203 8.718734 GTTATGTCGTCCTTCAACTTTAGAATT 58.281 33.333 0.00 0.00 0.00 2.17
203 204 9.932207 TTATGTCGTCCTTCAACTTTAGAATTA 57.068 29.630 0.00 0.00 0.00 1.40
204 205 8.842358 ATGTCGTCCTTCAACTTTAGAATTAA 57.158 30.769 0.00 0.00 0.00 1.40
205 206 8.842358 TGTCGTCCTTCAACTTTAGAATTAAT 57.158 30.769 0.00 0.00 0.00 1.40
206 207 9.280174 TGTCGTCCTTCAACTTTAGAATTAATT 57.720 29.630 0.00 0.00 0.00 1.40
207 208 9.756461 GTCGTCCTTCAACTTTAGAATTAATTC 57.244 33.333 18.70 18.70 37.06 2.17
242 243 8.815565 TTCAAGGGTTATTATAGCAATTCACA 57.184 30.769 0.00 0.00 0.00 3.58
243 244 8.995027 TCAAGGGTTATTATAGCAATTCACAT 57.005 30.769 0.00 0.00 0.00 3.21
244 245 9.420118 TCAAGGGTTATTATAGCAATTCACATT 57.580 29.630 0.00 0.00 0.00 2.71
245 246 9.683069 CAAGGGTTATTATAGCAATTCACATTC 57.317 33.333 0.00 0.00 0.00 2.67
246 247 8.409358 AGGGTTATTATAGCAATTCACATTCC 57.591 34.615 0.00 0.00 0.00 3.01
247 248 7.174946 AGGGTTATTATAGCAATTCACATTCCG 59.825 37.037 0.00 0.00 0.00 4.30
248 249 7.040686 GGGTTATTATAGCAATTCACATTCCGT 60.041 37.037 0.00 0.00 0.00 4.69
250 251 3.698029 ATAGCAATTCACATTCCGTGC 57.302 42.857 0.00 0.00 45.92 5.34
251 252 1.246649 AGCAATTCACATTCCGTGCA 58.753 45.000 0.00 0.00 45.92 4.57
252 253 1.820519 AGCAATTCACATTCCGTGCAT 59.179 42.857 0.00 0.00 45.92 3.96
253 254 3.016031 AGCAATTCACATTCCGTGCATA 58.984 40.909 0.00 0.00 45.92 3.14
254 255 3.065786 AGCAATTCACATTCCGTGCATAG 59.934 43.478 0.00 0.00 45.92 2.23
255 256 3.365832 CAATTCACATTCCGTGCATAGC 58.634 45.455 0.00 0.00 45.92 2.97
256 257 1.006086 TTCACATTCCGTGCATAGCG 58.994 50.000 0.00 0.00 45.92 4.26
257 258 0.108377 TCACATTCCGTGCATAGCGT 60.108 50.000 0.00 0.00 45.92 5.07
258 259 0.026674 CACATTCCGTGCATAGCGTG 59.973 55.000 0.00 0.00 39.19 5.34
259 260 1.089481 ACATTCCGTGCATAGCGTGG 61.089 55.000 0.00 0.00 0.00 4.94
260 261 0.809636 CATTCCGTGCATAGCGTGGA 60.810 55.000 0.00 0.00 33.71 4.02
261 262 0.530650 ATTCCGTGCATAGCGTGGAG 60.531 55.000 0.00 0.00 36.21 3.86
262 263 2.572095 TTCCGTGCATAGCGTGGAGG 62.572 60.000 0.00 0.70 36.21 4.30
263 264 3.264897 CGTGCATAGCGTGGAGGC 61.265 66.667 0.00 0.00 0.00 4.70
264 265 2.187946 GTGCATAGCGTGGAGGCT 59.812 61.111 0.00 0.00 46.88 4.58
270 271 2.733590 TAGCGTGGAGGCTATGGAG 58.266 57.895 0.00 0.00 44.29 3.86
286 287 6.761731 CTATGGAGCAAACTCGAATCTTAG 57.238 41.667 0.00 0.00 44.48 2.18
287 288 3.262420 TGGAGCAAACTCGAATCTTAGC 58.738 45.455 0.00 0.00 44.48 3.09
288 289 2.282820 GGAGCAAACTCGAATCTTAGCG 59.717 50.000 0.00 0.00 44.48 4.26
289 290 2.271800 AGCAAACTCGAATCTTAGCGG 58.728 47.619 0.00 0.00 0.00 5.52
290 291 1.327764 GCAAACTCGAATCTTAGCGGG 59.672 52.381 0.00 0.00 0.00 6.13
291 292 1.327764 CAAACTCGAATCTTAGCGGGC 59.672 52.381 0.00 0.00 0.00 6.13
292 293 0.535335 AACTCGAATCTTAGCGGGCA 59.465 50.000 0.00 0.00 0.00 5.36
293 294 0.179108 ACTCGAATCTTAGCGGGCAC 60.179 55.000 0.00 0.00 0.00 5.01
294 295 0.103208 CTCGAATCTTAGCGGGCACT 59.897 55.000 0.00 0.00 0.00 4.40
295 296 1.337071 CTCGAATCTTAGCGGGCACTA 59.663 52.381 0.00 0.00 0.00 2.74
296 297 1.961394 TCGAATCTTAGCGGGCACTAT 59.039 47.619 0.00 0.00 0.00 2.12
297 298 2.364324 TCGAATCTTAGCGGGCACTATT 59.636 45.455 0.00 0.00 0.00 1.73
298 299 3.570975 TCGAATCTTAGCGGGCACTATTA 59.429 43.478 0.00 0.00 0.00 0.98
299 300 3.921021 CGAATCTTAGCGGGCACTATTAG 59.079 47.826 0.00 0.00 0.00 1.73
300 301 3.963428 ATCTTAGCGGGCACTATTAGG 57.037 47.619 0.00 0.00 0.00 2.69
301 302 1.343465 TCTTAGCGGGCACTATTAGGC 59.657 52.381 0.00 0.00 0.00 3.93
309 310 1.221414 GCACTATTAGGCCAGCTTCG 58.779 55.000 5.01 0.00 0.00 3.79
310 311 1.871080 CACTATTAGGCCAGCTTCGG 58.129 55.000 5.01 0.00 0.00 4.30
311 312 1.139058 CACTATTAGGCCAGCTTCGGT 59.861 52.381 5.01 0.00 0.00 4.69
312 313 1.838077 ACTATTAGGCCAGCTTCGGTT 59.162 47.619 5.01 0.00 0.00 4.44
313 314 2.238898 ACTATTAGGCCAGCTTCGGTTT 59.761 45.455 5.01 0.00 0.00 3.27
314 315 2.215942 ATTAGGCCAGCTTCGGTTTT 57.784 45.000 5.01 0.00 0.00 2.43
315 316 1.989706 TTAGGCCAGCTTCGGTTTTT 58.010 45.000 5.01 0.00 0.00 1.94
380 381 9.474313 TCCTTATTGCTTTTATATTTGTGTCCT 57.526 29.630 0.00 0.00 0.00 3.85
416 417 8.671987 TTCACCAATATTTTTCTAAATGGGGA 57.328 30.769 0.00 0.00 33.56 4.81
417 418 8.671987 TCACCAATATTTTTCTAAATGGGGAA 57.328 30.769 0.00 0.00 32.85 3.97
418 419 9.278011 TCACCAATATTTTTCTAAATGGGGAAT 57.722 29.630 0.00 0.00 32.85 3.01
434 435 9.783081 AAATGGGGAATATATTTCAATTCTTGC 57.217 29.630 6.09 0.00 33.50 4.01
435 436 7.911130 TGGGGAATATATTTCAATTCTTGCA 57.089 32.000 6.09 0.00 33.50 4.08
436 437 7.725251 TGGGGAATATATTTCAATTCTTGCAC 58.275 34.615 6.09 0.00 33.50 4.57
437 438 7.344093 TGGGGAATATATTTCAATTCTTGCACA 59.656 33.333 6.09 0.00 33.50 4.57
438 439 8.370182 GGGGAATATATTTCAATTCTTGCACAT 58.630 33.333 6.09 0.00 33.50 3.21
439 440 9.768662 GGGAATATATTTCAATTCTTGCACATT 57.231 29.630 6.09 0.00 33.50 2.71
626 627 7.900782 TTAATTCTCGAGGTTAAGTTTCTGG 57.099 36.000 13.56 0.00 0.00 3.86
627 628 5.740290 ATTCTCGAGGTTAAGTTTCTGGA 57.260 39.130 13.56 0.00 0.00 3.86
628 629 5.540400 TTCTCGAGGTTAAGTTTCTGGAA 57.460 39.130 13.56 0.00 0.00 3.53
629 630 5.740290 TCTCGAGGTTAAGTTTCTGGAAT 57.260 39.130 13.56 0.00 0.00 3.01
630 631 5.721232 TCTCGAGGTTAAGTTTCTGGAATC 58.279 41.667 13.56 0.00 0.00 2.52
631 632 5.245301 TCTCGAGGTTAAGTTTCTGGAATCA 59.755 40.000 13.56 0.00 0.00 2.57
632 633 5.235516 TCGAGGTTAAGTTTCTGGAATCAC 58.764 41.667 0.00 0.00 0.00 3.06
633 634 4.091509 CGAGGTTAAGTTTCTGGAATCACG 59.908 45.833 0.00 0.00 0.00 4.35
634 635 3.751698 AGGTTAAGTTTCTGGAATCACGC 59.248 43.478 0.00 0.00 0.00 5.34
635 636 3.424433 GGTTAAGTTTCTGGAATCACGCG 60.424 47.826 3.53 3.53 0.00 6.01
636 637 0.517316 AAGTTTCTGGAATCACGCGC 59.483 50.000 5.73 0.00 0.00 6.86
655 656 3.578272 TCCACGTGCGGCACAAAC 61.578 61.111 30.23 6.09 33.40 2.93
657 658 3.882013 CACGTGCGGCACAAACCA 61.882 61.111 30.23 0.00 33.40 3.67
696 697 2.126307 CACGCCCAGAGACGTCAG 60.126 66.667 19.50 7.01 41.32 3.51
709 710 2.202401 GTCAGCGTCGACGTACCC 60.202 66.667 35.48 20.75 42.22 3.69
989 1030 4.463879 CCAGACGCCAGGCTCCAG 62.464 72.222 10.54 0.00 29.21 3.86
1183 1224 3.644399 GAGGGCAAGTCCGACGTCC 62.644 68.421 10.58 0.00 34.94 4.79
1280 1341 1.456331 CCCATGTCCCCATTGCCTC 60.456 63.158 0.00 0.00 0.00 4.70
1459 1569 0.747255 TGGCTTACATCGAGGAGCTC 59.253 55.000 3.06 4.71 35.53 4.09
1486 1596 1.084018 AAGAAGGGCCCTTTGATGGA 58.916 50.000 37.44 0.00 36.26 3.41
1489 1599 1.564348 GAAGGGCCCTTTGATGGACTA 59.436 52.381 37.44 0.00 36.26 2.59
1569 1679 9.103048 GTTGTCACTAAATTGTCAATTAACGAG 57.897 33.333 11.18 8.89 29.29 4.18
1646 1756 4.142730 GCTCCAAGAACAAGTAAGCTGATG 60.143 45.833 0.00 0.00 0.00 3.07
1651 1761 6.599244 CCAAGAACAAGTAAGCTGATGGATTA 59.401 38.462 0.00 0.00 0.00 1.75
1657 1767 9.499479 AACAAGTAAGCTGATGGATTATGATAG 57.501 33.333 0.00 0.00 0.00 2.08
1714 1824 9.280174 CCACTAGTAGTTCTTCCTAAGATAGAG 57.720 40.741 0.00 0.00 37.38 2.43
1730 1840 4.996122 AGATAGAGTATGCTGAATTGCTGC 59.004 41.667 0.00 0.00 41.36 5.25
1732 1842 2.943690 AGAGTATGCTGAATTGCTGCTG 59.056 45.455 0.00 0.00 41.53 4.41
1746 1856 1.527034 CTGCTGGAGCTGCAACTTTA 58.473 50.000 9.92 0.00 42.66 1.85
1771 1881 1.268539 GCTCACCGTTCTGTGTTTTGG 60.269 52.381 0.00 0.00 37.51 3.28
1810 1920 7.488322 CCTTGACTAGAGTTCCTAAGATCAAG 58.512 42.308 0.00 0.00 39.99 3.02
1813 1923 8.508883 TGACTAGAGTTCCTAAGATCAAGTAC 57.491 38.462 0.00 0.00 0.00 2.73
1911 2021 0.809385 TCGCTTCACTTCCTCGGTAG 59.191 55.000 0.00 0.00 0.00 3.18
1913 2023 1.741706 CGCTTCACTTCCTCGGTAGTA 59.258 52.381 0.00 0.00 0.00 1.82
1915 2025 2.754002 GCTTCACTTCCTCGGTAGTACT 59.246 50.000 0.00 0.00 0.00 2.73
1916 2026 3.193056 GCTTCACTTCCTCGGTAGTACTT 59.807 47.826 0.00 0.00 0.00 2.24
1917 2027 4.674885 GCTTCACTTCCTCGGTAGTACTTC 60.675 50.000 0.00 0.00 0.00 3.01
1918 2028 3.350833 TCACTTCCTCGGTAGTACTTCC 58.649 50.000 8.44 8.44 0.00 3.46
1935 2045 7.324178 AGTACTTCCATATGTTCTTCACAGAC 58.676 38.462 1.24 0.00 39.40 3.51
1936 2046 5.491982 ACTTCCATATGTTCTTCACAGACC 58.508 41.667 1.24 0.00 39.40 3.85
1937 2047 5.249393 ACTTCCATATGTTCTTCACAGACCT 59.751 40.000 1.24 0.00 39.40 3.85
1940 2050 5.013079 TCCATATGTTCTTCACAGACCTGTT 59.987 40.000 1.24 0.00 42.83 3.16
1981 2097 2.018542 TGGTTGTTGGCTAGCGTATC 57.981 50.000 9.00 0.40 0.00 2.24
1985 2101 2.596904 TGTTGGCTAGCGTATCTTCC 57.403 50.000 9.00 0.00 0.00 3.46
1989 2107 0.319986 GGCTAGCGTATCTTCCCAGC 60.320 60.000 9.00 0.00 0.00 4.85
1998 2116 0.998145 ATCTTCCCAGCTGCTTCCTT 59.002 50.000 8.66 0.00 0.00 3.36
2053 2171 1.846007 TTATTTTCCAGCCGGCATGT 58.154 45.000 31.54 4.59 0.00 3.21
2054 2172 2.719531 TATTTTCCAGCCGGCATGTA 57.280 45.000 31.54 10.03 0.00 2.29
2058 2176 0.107831 TTCCAGCCGGCATGTATACC 59.892 55.000 31.54 0.00 0.00 2.73
2077 2195 3.347216 ACCTCATGTGCAGTTATGTTCC 58.653 45.455 0.00 0.00 0.00 3.62
2147 2265 7.539710 CCAACTGTGTGATTCTTTTGTATCATG 59.460 37.037 0.00 0.00 38.25 3.07
2152 2270 8.236586 TGTGTGATTCTTTTGTATCATGCTTAC 58.763 33.333 0.00 0.00 38.25 2.34
2155 2273 9.793252 GTGATTCTTTTGTATCATGCTTACAAT 57.207 29.630 16.77 6.55 38.84 2.71
2189 2307 3.467803 AGGCTTTATGCATCCTAACGAC 58.532 45.455 0.19 0.00 45.15 4.34
2222 2340 4.553330 AAAAACCTCCAAGAGCTCGATA 57.447 40.909 8.37 0.00 0.00 2.92
2238 2356 8.412456 AGAGCTCGATATATTCTAATGATGGTG 58.588 37.037 8.37 0.00 0.00 4.17
2239 2357 6.983307 AGCTCGATATATTCTAATGATGGTGC 59.017 38.462 0.00 0.00 0.00 5.01
2261 2379 5.534654 TGCACAGCATATTTTTAGGGGATAC 59.465 40.000 0.00 0.00 31.71 2.24
2277 2395 4.908481 GGGGATACTTTACAGAGGAAGGAT 59.092 45.833 0.00 0.00 0.00 3.24
2320 2439 8.534333 TGACATAGTTTACACTCTGAACAATC 57.466 34.615 1.78 0.00 32.59 2.67
2350 2469 4.511454 GTGTGTGTGTGAGATCAAGCTTTA 59.489 41.667 0.00 0.00 0.00 1.85
2357 2476 8.454106 GTGTGTGAGATCAAGCTTTAACATATT 58.546 33.333 0.00 0.00 0.00 1.28
2436 2573 8.420222 TCATTCCATGTTGAGTGTTTATTTTGT 58.580 29.630 0.00 0.00 0.00 2.83
2470 2607 4.749976 CCTTCTTAGGTCAACTGAGTAGC 58.250 47.826 0.00 0.00 36.74 3.58
2619 2756 2.358737 CACACGGTCCCAAGGCTC 60.359 66.667 0.00 0.00 0.00 4.70
2643 2780 5.760253 CGTTGGTAAGCTCTCATATTTCCAT 59.240 40.000 0.00 0.00 0.00 3.41
2647 2784 7.999679 TGGTAAGCTCTCATATTTCCATTTTG 58.000 34.615 0.00 0.00 0.00 2.44
2672 2809 0.389426 GCTCCTCTGAACGGCGTAAA 60.389 55.000 15.20 3.26 0.00 2.01
2708 2845 4.576216 ATCGATCCAGTTGTAGTGCTAG 57.424 45.455 0.00 0.00 0.00 3.42
2753 2891 7.032580 CAGAAGAGATCAGTAGGTAAACTGTG 58.967 42.308 0.00 0.00 45.78 3.66
2759 2897 7.324178 AGATCAGTAGGTAAACTGTGAACATC 58.676 38.462 0.00 0.59 45.78 3.06
2783 2921 1.176527 ATTTGTGATTGGAGGCCACG 58.823 50.000 5.01 0.00 30.78 4.94
2796 2934 0.035820 GGCCACGGGATCACAAACTA 60.036 55.000 0.00 0.00 0.00 2.24
2814 2952 9.559958 CACAAACTATAGCTGGAAAATAAACTG 57.440 33.333 0.00 0.00 0.00 3.16
2842 2980 8.489489 AGTATTGCTCTTTCCATCTAATTCAGA 58.511 33.333 0.00 0.00 37.79 3.27
2846 2984 7.170965 TGCTCTTTCCATCTAATTCAGAGTTT 58.829 34.615 0.00 0.00 36.48 2.66
2855 2993 9.551734 CCATCTAATTCAGAGTTTGATATGTGA 57.448 33.333 2.97 0.00 36.48 3.58
2858 2996 9.383519 TCTAATTCAGAGTTTGATATGTGAACC 57.616 33.333 0.00 0.00 35.27 3.62
2863 3188 4.940046 AGAGTTTGATATGTGAACCTGCTG 59.060 41.667 0.00 0.00 0.00 4.41
2886 3211 7.148018 GCTGAACATATTTCTGGATGGAAGAAA 60.148 37.037 1.45 1.45 45.17 2.52
2899 3224 7.930217 TGGATGGAAGAAATTTAAATAGCTCG 58.070 34.615 0.01 0.00 0.00 5.03
2917 3243 1.203052 TCGTAGGGTTTAAGCGACCTG 59.797 52.381 0.00 0.00 37.34 4.00
2936 3262 2.285083 TGTCAGTTTCTTGGTTCACCG 58.715 47.619 0.00 0.00 39.43 4.94
2959 3285 0.392706 TGCATCGATATGAACGCCCT 59.607 50.000 0.00 0.00 34.84 5.19
2960 3286 1.616374 TGCATCGATATGAACGCCCTA 59.384 47.619 0.00 0.00 34.84 3.53
2971 3297 7.359264 CGATATGAACGCCCTATAAACTTTCTG 60.359 40.741 0.00 0.00 0.00 3.02
2973 3299 5.741011 TGAACGCCCTATAAACTTTCTGAT 58.259 37.500 0.00 0.00 0.00 2.90
3081 3407 0.693049 AACTTCCATCCGTCAAGGCT 59.307 50.000 0.00 0.00 40.77 4.58
3138 3464 6.017933 CGAAAAAGAAGTGTGCATCTGATAC 58.982 40.000 0.00 0.00 0.00 2.24
3174 3500 5.824904 AGTGCCTGAATACACATCAAATC 57.175 39.130 0.00 0.00 39.30 2.17
3175 3501 5.255687 AGTGCCTGAATACACATCAAATCA 58.744 37.500 0.00 0.00 39.30 2.57
3177 3503 5.124457 GTGCCTGAATACACATCAAATCAGT 59.876 40.000 0.00 0.00 36.77 3.41
3195 3521 7.658179 AATCAGTATATAGGCAAATCACACG 57.342 36.000 0.00 0.00 0.00 4.49
3235 3561 1.882623 TGTGTTGTTGCAAGTGTGTGA 59.117 42.857 0.00 0.00 0.00 3.58
3236 3562 2.491298 TGTGTTGTTGCAAGTGTGTGAT 59.509 40.909 0.00 0.00 0.00 3.06
3237 3563 3.056962 TGTGTTGTTGCAAGTGTGTGATT 60.057 39.130 0.00 0.00 0.00 2.57
3238 3564 4.156739 TGTGTTGTTGCAAGTGTGTGATTA 59.843 37.500 0.00 0.00 0.00 1.75
3240 3566 5.748152 GTGTTGTTGCAAGTGTGTGATTATT 59.252 36.000 0.00 0.00 0.00 1.40
3242 3568 7.433719 GTGTTGTTGCAAGTGTGTGATTATTTA 59.566 33.333 0.00 0.00 0.00 1.40
3243 3569 8.140628 TGTTGTTGCAAGTGTGTGATTATTTAT 58.859 29.630 0.00 0.00 0.00 1.40
3246 3572 9.619316 TGTTGCAAGTGTGTGATTATTTATTAC 57.381 29.630 0.00 0.00 0.00 1.89
3247 3573 9.840427 GTTGCAAGTGTGTGATTATTTATTACT 57.160 29.630 0.00 0.00 0.00 2.24
3249 3575 8.673711 TGCAAGTGTGTGATTATTTATTACTCC 58.326 33.333 0.00 0.00 0.00 3.85
3250 3576 8.129211 GCAAGTGTGTGATTATTTATTACTCCC 58.871 37.037 0.00 0.00 0.00 4.30
3251 3577 9.396022 CAAGTGTGTGATTATTTATTACTCCCT 57.604 33.333 0.00 0.00 0.00 4.20
3252 3578 9.614792 AAGTGTGTGATTATTTATTACTCCCTC 57.385 33.333 0.00 0.00 0.00 4.30
3253 3579 8.211629 AGTGTGTGATTATTTATTACTCCCTCC 58.788 37.037 0.00 0.00 0.00 4.30
3254 3580 7.170998 GTGTGTGATTATTTATTACTCCCTCCG 59.829 40.741 0.00 0.00 0.00 4.63
3255 3581 7.147620 TGTGTGATTATTTATTACTCCCTCCGT 60.148 37.037 0.00 0.00 0.00 4.69
3256 3582 7.713942 GTGTGATTATTTATTACTCCCTCCGTT 59.286 37.037 0.00 0.00 0.00 4.44
3257 3583 7.929785 TGTGATTATTTATTACTCCCTCCGTTC 59.070 37.037 0.00 0.00 0.00 3.95
3258 3584 7.387122 GTGATTATTTATTACTCCCTCCGTTCC 59.613 40.741 0.00 0.00 0.00 3.62
3259 3585 7.291651 TGATTATTTATTACTCCCTCCGTTCCT 59.708 37.037 0.00 0.00 0.00 3.36
3260 3586 8.731591 ATTATTTATTACTCCCTCCGTTCCTA 57.268 34.615 0.00 0.00 0.00 2.94
3261 3587 8.551682 TTATTTATTACTCCCTCCGTTCCTAA 57.448 34.615 0.00 0.00 0.00 2.69
3262 3588 6.872585 TTTATTACTCCCTCCGTTCCTAAA 57.127 37.500 0.00 0.00 0.00 1.85
3263 3589 7.441903 TTTATTACTCCCTCCGTTCCTAAAT 57.558 36.000 0.00 0.00 0.00 1.40
3264 3590 8.551682 TTTATTACTCCCTCCGTTCCTAAATA 57.448 34.615 0.00 0.00 0.00 1.40
3265 3591 8.731591 TTATTACTCCCTCCGTTCCTAAATAT 57.268 34.615 0.00 0.00 0.00 1.28
3266 3592 7.628501 ATTACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
3267 3593 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3268 3594 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3269 3595 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3270 3596 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3271 3597 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3272 3598 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3273 3599 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3274 3600 7.415206 CCCTCCGTTCCTAAATATTTGTCTTTG 60.415 40.741 11.05 0.00 0.00 2.77
3275 3601 7.120726 CCTCCGTTCCTAAATATTTGTCTTTGT 59.879 37.037 11.05 0.00 0.00 2.83
3276 3602 7.812648 TCCGTTCCTAAATATTTGTCTTTGTG 58.187 34.615 11.05 0.00 0.00 3.33
3277 3603 7.662258 TCCGTTCCTAAATATTTGTCTTTGTGA 59.338 33.333 11.05 0.00 0.00 3.58
3278 3604 8.293867 CCGTTCCTAAATATTTGTCTTTGTGAA 58.706 33.333 11.05 0.25 0.00 3.18
3279 3605 9.329913 CGTTCCTAAATATTTGTCTTTGTGAAG 57.670 33.333 11.05 0.00 0.00 3.02
3292 3618 9.734620 TTGTCTTTGTGAAGATTTCAATAAGTG 57.265 29.630 11.00 0.00 43.41 3.16
3293 3619 9.119418 TGTCTTTGTGAAGATTTCAATAAGTGA 57.881 29.630 11.00 0.00 43.41 3.41
3294 3620 9.387123 GTCTTTGTGAAGATTTCAATAAGTGAC 57.613 33.333 11.00 9.39 43.41 3.67
3295 3621 9.342308 TCTTTGTGAAGATTTCAATAAGTGACT 57.658 29.630 11.00 0.00 42.15 3.41
3298 3624 9.554395 TTGTGAAGATTTCAATAAGTGACTACA 57.446 29.630 0.00 0.00 42.15 2.74
3299 3625 9.725019 TGTGAAGATTTCAATAAGTGACTACAT 57.275 29.630 0.00 0.00 42.15 2.29
3303 3629 9.871238 AAGATTTCAATAAGTGACTACATACGT 57.129 29.630 0.00 0.00 35.39 3.57
3318 3644 7.520119 CTACATACGTAGCAAAATGAGTGAA 57.480 36.000 0.08 0.00 38.84 3.18
3319 3645 6.985188 ACATACGTAGCAAAATGAGTGAAT 57.015 33.333 0.08 0.00 0.00 2.57
3320 3646 7.005062 ACATACGTAGCAAAATGAGTGAATC 57.995 36.000 0.08 0.00 0.00 2.52
3321 3647 6.818644 ACATACGTAGCAAAATGAGTGAATCT 59.181 34.615 0.08 0.00 0.00 2.40
3322 3648 7.979537 ACATACGTAGCAAAATGAGTGAATCTA 59.020 33.333 0.08 0.00 0.00 1.98
3323 3649 6.648725 ACGTAGCAAAATGAGTGAATCTAC 57.351 37.500 0.00 0.00 0.00 2.59
3324 3650 6.163476 ACGTAGCAAAATGAGTGAATCTACA 58.837 36.000 0.00 0.00 0.00 2.74
3325 3651 6.818644 ACGTAGCAAAATGAGTGAATCTACAT 59.181 34.615 0.00 0.00 0.00 2.29
3326 3652 7.334421 ACGTAGCAAAATGAGTGAATCTACATT 59.666 33.333 0.00 0.00 34.99 2.71
3327 3653 7.848051 CGTAGCAAAATGAGTGAATCTACATTC 59.152 37.037 0.00 0.00 39.24 2.67
3328 3654 7.934855 AGCAAAATGAGTGAATCTACATTCT 57.065 32.000 0.00 0.00 39.49 2.40
3330 3656 9.453572 AGCAAAATGAGTGAATCTACATTCTAA 57.546 29.630 0.00 0.00 39.49 2.10
3355 3681 9.890629 AAAATATGTCTATATACATCCGCATGT 57.109 29.630 7.00 0.00 45.73 3.21
3356 3682 8.877808 AATATGTCTATATACATCCGCATGTG 57.122 34.615 1.14 0.00 43.54 3.21
3357 3683 5.072040 TGTCTATATACATCCGCATGTGG 57.928 43.478 19.75 19.75 43.54 4.17
3358 3684 4.526650 TGTCTATATACATCCGCATGTGGT 59.473 41.667 24.28 8.62 43.54 4.16
3359 3685 5.712917 TGTCTATATACATCCGCATGTGGTA 59.287 40.000 24.28 10.63 43.54 3.25
3360 3686 6.127730 TGTCTATATACATCCGCATGTGGTAG 60.128 42.308 24.28 19.08 43.54 3.18
3361 3687 2.169832 ATACATCCGCATGTGGTAGC 57.830 50.000 24.28 0.00 43.54 3.58
3362 3688 0.105964 TACATCCGCATGTGGTAGCC 59.894 55.000 24.28 0.00 43.54 3.93
3363 3689 1.153188 CATCCGCATGTGGTAGCCA 60.153 57.895 24.28 5.61 0.00 4.75
3364 3690 0.535780 CATCCGCATGTGGTAGCCAT 60.536 55.000 24.28 7.86 35.28 4.40
3365 3691 0.183492 ATCCGCATGTGGTAGCCATT 59.817 50.000 24.28 0.40 35.28 3.16
3366 3692 0.034574 TCCGCATGTGGTAGCCATTT 60.035 50.000 24.28 0.00 35.28 2.32
3367 3693 0.101040 CCGCATGTGGTAGCCATTTG 59.899 55.000 17.59 0.00 35.28 2.32
3368 3694 1.093972 CGCATGTGGTAGCCATTTGA 58.906 50.000 0.00 0.00 35.28 2.69
3369 3695 1.472082 CGCATGTGGTAGCCATTTGAA 59.528 47.619 0.00 0.00 35.28 2.69
3370 3696 2.094803 CGCATGTGGTAGCCATTTGAAA 60.095 45.455 0.00 0.00 35.28 2.69
3371 3697 3.429272 CGCATGTGGTAGCCATTTGAAAT 60.429 43.478 0.00 0.00 35.28 2.17
3372 3698 4.202000 CGCATGTGGTAGCCATTTGAAATA 60.202 41.667 0.00 0.00 35.28 1.40
3373 3699 5.507817 CGCATGTGGTAGCCATTTGAAATAT 60.508 40.000 0.00 0.00 35.28 1.28
3374 3700 5.922544 GCATGTGGTAGCCATTTGAAATATC 59.077 40.000 0.00 0.00 35.28 1.63
3375 3701 6.239120 GCATGTGGTAGCCATTTGAAATATCT 60.239 38.462 0.00 0.00 35.28 1.98
3376 3702 7.040478 GCATGTGGTAGCCATTTGAAATATCTA 60.040 37.037 0.00 0.00 35.28 1.98
3377 3703 8.849168 CATGTGGTAGCCATTTGAAATATCTAA 58.151 33.333 0.00 0.00 35.28 2.10
3378 3704 8.815565 TGTGGTAGCCATTTGAAATATCTAAA 57.184 30.769 0.00 0.00 35.28 1.85
3379 3705 9.249053 TGTGGTAGCCATTTGAAATATCTAAAA 57.751 29.630 0.00 0.00 35.28 1.52
3403 3729 9.893305 AAAAGACAAATATTTAGAAACGGAGTG 57.107 29.630 0.00 0.00 45.00 3.51
3404 3730 8.842358 AAGACAAATATTTAGAAACGGAGTGA 57.158 30.769 0.00 0.00 45.00 3.41
3405 3731 8.480643 AGACAAATATTTAGAAACGGAGTGAG 57.519 34.615 0.00 0.00 45.00 3.51
3406 3732 8.095169 AGACAAATATTTAGAAACGGAGTGAGT 58.905 33.333 0.00 0.00 45.00 3.41
3407 3733 9.362539 GACAAATATTTAGAAACGGAGTGAGTA 57.637 33.333 0.00 0.00 45.00 2.59
3408 3734 9.148104 ACAAATATTTAGAAACGGAGTGAGTAC 57.852 33.333 0.00 0.00 45.00 2.73
3449 3775 2.423892 TCTAGCTCTTTGCCACTACTCG 59.576 50.000 0.00 0.00 44.23 4.18
3455 3781 1.455786 CTTTGCCACTACTCGTTCACG 59.544 52.381 0.00 0.00 41.45 4.35
3501 3827 7.479897 TCTCGTGTTGATACTGTATCTCTAC 57.520 40.000 23.96 18.98 36.17 2.59
3524 3850 9.257651 CTACAGTACTGTATTAACAAATAGGGC 57.742 37.037 30.78 0.00 44.15 5.19
3525 3851 7.626390 ACAGTACTGTATTAACAAATAGGGCA 58.374 34.615 26.91 0.00 42.90 5.36
3526 3852 7.551617 ACAGTACTGTATTAACAAATAGGGCAC 59.448 37.037 26.91 0.00 42.90 5.01
3527 3853 7.769044 CAGTACTGTATTAACAAATAGGGCACT 59.231 37.037 15.06 0.00 34.49 4.40
3528 3854 7.769044 AGTACTGTATTAACAAATAGGGCACTG 59.231 37.037 0.00 0.00 34.49 3.66
3529 3855 5.357032 ACTGTATTAACAAATAGGGCACTGC 59.643 40.000 0.00 0.00 34.49 4.40
3530 3856 5.505780 TGTATTAACAAATAGGGCACTGCT 58.494 37.500 0.00 0.00 30.91 4.24
3531 3857 6.654959 TGTATTAACAAATAGGGCACTGCTA 58.345 36.000 0.00 0.00 30.91 3.49
3532 3858 6.540914 TGTATTAACAAATAGGGCACTGCTAC 59.459 38.462 0.00 0.00 30.91 3.58
3543 3869 2.032549 GGCACTGCTACGCTGATATTTG 60.033 50.000 0.00 0.00 0.00 2.32
3558 3884 2.919666 ATTTGCATATTATCCGCCGC 57.080 45.000 0.00 0.00 0.00 6.53
3566 3892 1.532604 ATTATCCGCCGCCTCGATGA 61.533 55.000 0.00 0.00 0.00 2.92
3610 3936 1.202348 CTGTCTGATGTAGTGTCCGCA 59.798 52.381 0.00 0.00 0.00 5.69
3613 3939 0.460284 CTGATGTAGTGTCCGCACCC 60.460 60.000 0.00 0.00 46.35 4.61
3621 3947 3.127533 GTCCGCACCCTGCATGTC 61.128 66.667 0.00 0.00 45.36 3.06
3651 3977 1.264288 CTTCCCGCAACAAACACTCTC 59.736 52.381 0.00 0.00 0.00 3.20
3654 3980 2.103432 TCCCGCAACAAACACTCTCTTA 59.897 45.455 0.00 0.00 0.00 2.10
3657 3983 3.311322 CCGCAACAAACACTCTCTTACAA 59.689 43.478 0.00 0.00 0.00 2.41
3677 4003 1.636148 AAACAAGACTGCATGCCCAT 58.364 45.000 16.68 0.00 0.00 4.00
3689 4015 2.961062 GCATGCCCATTCATTACTTCCT 59.039 45.455 6.36 0.00 0.00 3.36
3695 4021 3.181497 CCCATTCATTACTTCCTGCAACG 60.181 47.826 0.00 0.00 0.00 4.10
3699 4025 3.734463 TCATTACTTCCTGCAACGAACA 58.266 40.909 0.00 0.00 0.00 3.18
3704 4030 2.364324 ACTTCCTGCAACGAACACTCTA 59.636 45.455 0.00 0.00 0.00 2.43
3717 4043 7.639162 ACGAACACTCTATTACAGAAACAAG 57.361 36.000 0.00 0.00 31.12 3.16
3722 4048 7.680730 ACACTCTATTACAGAAACAAGACCAT 58.319 34.615 0.00 0.00 31.12 3.55
3728 4054 3.356290 ACAGAAACAAGACCATATGCCC 58.644 45.455 0.00 0.00 0.00 5.36
3767 4252 4.595762 ACAAATGCTCTGTTGCAGAAAT 57.404 36.364 0.37 0.00 46.71 2.17
3894 4379 4.337060 CAGTCGTCGACGCCACCA 62.337 66.667 32.19 12.84 37.67 4.17
4036 4555 2.811431 TGTTATCCAGTTGCAGGAAACG 59.189 45.455 0.00 0.00 38.93 3.60
4047 4566 0.600255 CAGGAAACGAACACGCCTCT 60.600 55.000 0.00 0.00 0.00 3.69
4051 4570 0.032952 AAACGAACACGCCTCTAGCA 59.967 50.000 0.00 0.00 44.04 3.49
4053 4572 0.388649 ACGAACACGCCTCTAGCAAG 60.389 55.000 0.00 0.00 44.04 4.01
4054 4573 0.109272 CGAACACGCCTCTAGCAAGA 60.109 55.000 0.00 0.00 44.04 3.02
4055 4574 1.351153 GAACACGCCTCTAGCAAGAC 58.649 55.000 0.00 0.00 44.04 3.01
4102 4621 2.855209 AGCATAGATCAGATGGCCAC 57.145 50.000 8.16 1.58 0.00 5.01
4104 4623 1.943046 GCATAGATCAGATGGCCACGG 60.943 57.143 8.16 3.03 0.00 4.94
4107 4626 0.397675 AGATCAGATGGCCACGGAGA 60.398 55.000 8.16 4.22 0.00 3.71
4130 4649 3.507924 GATGGGTGCGCGCAATCA 61.508 61.111 38.24 33.44 40.96 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.004086 TCCACTGGAAAAACAAGAACATATCT 58.996 34.615 0.00 0.00 41.32 1.98
5 6 7.084486 GTCCACTGGAAAAACAAGAACATATC 58.916 38.462 0.00 0.00 31.38 1.63
6 7 6.549364 TGTCCACTGGAAAAACAAGAACATAT 59.451 34.615 0.00 0.00 31.38 1.78
7 8 5.888724 TGTCCACTGGAAAAACAAGAACATA 59.111 36.000 0.00 0.00 31.38 2.29
8 9 4.709397 TGTCCACTGGAAAAACAAGAACAT 59.291 37.500 0.00 0.00 31.38 2.71
9 10 4.082845 TGTCCACTGGAAAAACAAGAACA 58.917 39.130 0.00 0.00 31.38 3.18
10 11 4.712122 TGTCCACTGGAAAAACAAGAAC 57.288 40.909 0.00 0.00 31.38 3.01
11 12 4.952957 TCATGTCCACTGGAAAAACAAGAA 59.047 37.500 0.00 0.00 31.38 2.52
12 13 4.531854 TCATGTCCACTGGAAAAACAAGA 58.468 39.130 0.00 0.00 31.38 3.02
13 14 4.916983 TCATGTCCACTGGAAAAACAAG 57.083 40.909 0.00 0.00 31.38 3.16
14 15 5.049060 CGTATCATGTCCACTGGAAAAACAA 60.049 40.000 0.00 0.00 31.38 2.83
15 16 4.454161 CGTATCATGTCCACTGGAAAAACA 59.546 41.667 0.00 0.00 31.38 2.83
16 17 4.454504 ACGTATCATGTCCACTGGAAAAAC 59.545 41.667 0.00 0.00 31.38 2.43
17 18 4.647611 ACGTATCATGTCCACTGGAAAAA 58.352 39.130 0.00 0.00 31.38 1.94
18 19 4.280436 ACGTATCATGTCCACTGGAAAA 57.720 40.909 0.00 0.00 31.38 2.29
19 20 3.973206 ACGTATCATGTCCACTGGAAA 57.027 42.857 0.00 0.00 31.38 3.13
20 21 3.973206 AACGTATCATGTCCACTGGAA 57.027 42.857 0.00 0.00 31.38 3.53
21 22 3.973206 AAACGTATCATGTCCACTGGA 57.027 42.857 0.00 0.00 0.00 3.86
22 23 3.751175 ACAAAACGTATCATGTCCACTGG 59.249 43.478 0.00 0.00 0.00 4.00
23 24 5.146460 CAACAAAACGTATCATGTCCACTG 58.854 41.667 0.00 0.00 0.00 3.66
24 25 4.320202 GCAACAAAACGTATCATGTCCACT 60.320 41.667 0.00 0.00 0.00 4.00
25 26 3.911964 GCAACAAAACGTATCATGTCCAC 59.088 43.478 0.00 0.00 0.00 4.02
26 27 3.057876 GGCAACAAAACGTATCATGTCCA 60.058 43.478 0.00 0.00 0.00 4.02
27 28 3.498082 GGCAACAAAACGTATCATGTCC 58.502 45.455 0.00 0.00 0.00 4.02
43 44 6.801862 GTGTATTTGTGTAGAAGATTGGCAAC 59.198 38.462 0.00 0.00 0.00 4.17
44 45 6.072175 GGTGTATTTGTGTAGAAGATTGGCAA 60.072 38.462 0.68 0.68 0.00 4.52
45 46 5.414454 GGTGTATTTGTGTAGAAGATTGGCA 59.586 40.000 0.00 0.00 0.00 4.92
46 47 5.447279 CGGTGTATTTGTGTAGAAGATTGGC 60.447 44.000 0.00 0.00 0.00 4.52
47 48 5.872617 TCGGTGTATTTGTGTAGAAGATTGG 59.127 40.000 0.00 0.00 0.00 3.16
48 49 6.961359 TCGGTGTATTTGTGTAGAAGATTG 57.039 37.500 0.00 0.00 0.00 2.67
49 50 7.327975 TCATCGGTGTATTTGTGTAGAAGATT 58.672 34.615 0.00 0.00 0.00 2.40
50 51 6.873997 TCATCGGTGTATTTGTGTAGAAGAT 58.126 36.000 0.00 0.00 0.00 2.40
51 52 6.275494 TCATCGGTGTATTTGTGTAGAAGA 57.725 37.500 0.00 0.00 0.00 2.87
52 53 6.367695 TGTTCATCGGTGTATTTGTGTAGAAG 59.632 38.462 0.00 0.00 0.00 2.85
53 54 6.224584 TGTTCATCGGTGTATTTGTGTAGAA 58.775 36.000 0.00 0.00 0.00 2.10
54 55 5.785243 TGTTCATCGGTGTATTTGTGTAGA 58.215 37.500 0.00 0.00 0.00 2.59
55 56 6.456853 CCATGTTCATCGGTGTATTTGTGTAG 60.457 42.308 0.00 0.00 0.00 2.74
56 57 5.352846 CCATGTTCATCGGTGTATTTGTGTA 59.647 40.000 0.00 0.00 0.00 2.90
57 58 4.155826 CCATGTTCATCGGTGTATTTGTGT 59.844 41.667 0.00 0.00 0.00 3.72
58 59 4.438608 CCCATGTTCATCGGTGTATTTGTG 60.439 45.833 0.00 0.00 0.00 3.33
59 60 3.694072 CCCATGTTCATCGGTGTATTTGT 59.306 43.478 0.00 0.00 0.00 2.83
60 61 3.694072 ACCCATGTTCATCGGTGTATTTG 59.306 43.478 0.00 0.00 0.00 2.32
61 62 3.963129 ACCCATGTTCATCGGTGTATTT 58.037 40.909 0.00 0.00 0.00 1.40
62 63 3.644966 ACCCATGTTCATCGGTGTATT 57.355 42.857 0.00 0.00 0.00 1.89
63 64 3.644966 AACCCATGTTCATCGGTGTAT 57.355 42.857 3.11 0.00 0.00 2.29
80 81 4.546829 TTCAGTAGGGTGTGTATGAACC 57.453 45.455 0.00 0.00 35.59 3.62
81 82 5.938125 ACAATTCAGTAGGGTGTGTATGAAC 59.062 40.000 0.00 0.00 30.20 3.18
82 83 6.121776 ACAATTCAGTAGGGTGTGTATGAA 57.878 37.500 0.00 0.00 0.00 2.57
83 84 5.755409 ACAATTCAGTAGGGTGTGTATGA 57.245 39.130 0.00 0.00 0.00 2.15
84 85 7.915293 TTAACAATTCAGTAGGGTGTGTATG 57.085 36.000 0.00 0.00 0.00 2.39
85 86 9.174166 GATTTAACAATTCAGTAGGGTGTGTAT 57.826 33.333 0.00 0.00 0.00 2.29
86 87 8.380099 AGATTTAACAATTCAGTAGGGTGTGTA 58.620 33.333 0.00 0.00 0.00 2.90
87 88 7.231467 AGATTTAACAATTCAGTAGGGTGTGT 58.769 34.615 0.00 0.00 0.00 3.72
88 89 7.687941 AGATTTAACAATTCAGTAGGGTGTG 57.312 36.000 0.00 0.00 0.00 3.82
136 137 8.202137 GCCTCTAGGACTATGTATGTTAAAACA 58.798 37.037 0.00 0.00 39.56 2.83
137 138 8.422566 AGCCTCTAGGACTATGTATGTTAAAAC 58.577 37.037 0.00 0.00 37.39 2.43
138 139 8.548880 AGCCTCTAGGACTATGTATGTTAAAA 57.451 34.615 0.00 0.00 37.39 1.52
139 140 8.548880 AAGCCTCTAGGACTATGTATGTTAAA 57.451 34.615 0.00 0.00 37.39 1.52
140 141 9.075678 GTAAGCCTCTAGGACTATGTATGTTAA 57.924 37.037 0.00 0.00 37.39 2.01
141 142 8.446394 AGTAAGCCTCTAGGACTATGTATGTTA 58.554 37.037 0.00 0.00 37.39 2.41
142 143 7.299134 AGTAAGCCTCTAGGACTATGTATGTT 58.701 38.462 0.00 0.00 37.39 2.71
143 144 6.854578 AGTAAGCCTCTAGGACTATGTATGT 58.145 40.000 0.00 0.00 37.39 2.29
144 145 6.943146 TGAGTAAGCCTCTAGGACTATGTATG 59.057 42.308 0.00 0.00 41.11 2.39
145 146 6.943718 GTGAGTAAGCCTCTAGGACTATGTAT 59.056 42.308 0.00 0.00 41.11 2.29
146 147 6.297582 GTGAGTAAGCCTCTAGGACTATGTA 58.702 44.000 0.00 0.00 41.11 2.29
147 148 5.134661 GTGAGTAAGCCTCTAGGACTATGT 58.865 45.833 0.00 0.00 41.11 2.29
148 149 4.214545 CGTGAGTAAGCCTCTAGGACTATG 59.785 50.000 0.00 0.00 41.11 2.23
149 150 4.102838 TCGTGAGTAAGCCTCTAGGACTAT 59.897 45.833 0.00 0.00 41.11 2.12
150 151 3.453717 TCGTGAGTAAGCCTCTAGGACTA 59.546 47.826 0.00 0.00 41.11 2.59
151 152 2.239150 TCGTGAGTAAGCCTCTAGGACT 59.761 50.000 0.00 0.00 41.11 3.85
152 153 2.641305 TCGTGAGTAAGCCTCTAGGAC 58.359 52.381 0.00 0.00 41.11 3.85
153 154 3.579534 ATCGTGAGTAAGCCTCTAGGA 57.420 47.619 0.00 0.00 41.11 2.94
154 155 3.243569 CCAATCGTGAGTAAGCCTCTAGG 60.244 52.174 0.00 0.00 41.11 3.02
155 156 3.381908 ACCAATCGTGAGTAAGCCTCTAG 59.618 47.826 0.00 0.00 41.11 2.43
156 157 3.362706 ACCAATCGTGAGTAAGCCTCTA 58.637 45.455 0.00 0.00 41.11 2.43
157 158 2.180276 ACCAATCGTGAGTAAGCCTCT 58.820 47.619 0.00 0.00 41.11 3.69
158 159 2.674796 ACCAATCGTGAGTAAGCCTC 57.325 50.000 0.00 0.00 40.89 4.70
159 160 4.081087 ACATAACCAATCGTGAGTAAGCCT 60.081 41.667 0.00 0.00 0.00 4.58
160 161 4.189231 ACATAACCAATCGTGAGTAAGCC 58.811 43.478 0.00 0.00 0.00 4.35
161 162 4.026804 CGACATAACCAATCGTGAGTAAGC 60.027 45.833 0.00 0.00 0.00 3.09
162 163 5.100259 ACGACATAACCAATCGTGAGTAAG 58.900 41.667 0.00 0.00 46.68 2.34
163 164 5.063180 ACGACATAACCAATCGTGAGTAA 57.937 39.130 0.00 0.00 46.68 2.24
164 165 4.707030 ACGACATAACCAATCGTGAGTA 57.293 40.909 0.00 0.00 46.68 2.59
165 166 3.587797 ACGACATAACCAATCGTGAGT 57.412 42.857 0.00 0.00 46.68 3.41
170 171 3.517602 TGAAGGACGACATAACCAATCG 58.482 45.455 0.00 0.00 41.60 3.34
171 172 4.935808 AGTTGAAGGACGACATAACCAATC 59.064 41.667 0.00 0.00 35.47 2.67
172 173 4.906618 AGTTGAAGGACGACATAACCAAT 58.093 39.130 0.00 0.00 35.47 3.16
173 174 4.345859 AGTTGAAGGACGACATAACCAA 57.654 40.909 0.00 0.00 35.47 3.67
174 175 4.345859 AAGTTGAAGGACGACATAACCA 57.654 40.909 0.00 0.00 35.47 3.67
175 176 6.161381 TCTAAAGTTGAAGGACGACATAACC 58.839 40.000 0.00 0.00 35.47 2.85
176 177 7.647907 TTCTAAAGTTGAAGGACGACATAAC 57.352 36.000 0.00 0.00 35.47 1.89
177 178 8.842358 AATTCTAAAGTTGAAGGACGACATAA 57.158 30.769 0.00 0.00 35.47 1.90
178 179 9.932207 TTAATTCTAAAGTTGAAGGACGACATA 57.068 29.630 0.00 0.00 35.47 2.29
179 180 8.842358 TTAATTCTAAAGTTGAAGGACGACAT 57.158 30.769 0.00 0.00 35.47 3.06
180 181 8.842358 ATTAATTCTAAAGTTGAAGGACGACA 57.158 30.769 0.00 0.00 35.47 4.35
181 182 9.756461 GAATTAATTCTAAAGTTGAAGGACGAC 57.244 33.333 18.99 0.00 34.05 4.34
182 183 9.720769 AGAATTAATTCTAAAGTTGAAGGACGA 57.279 29.630 25.81 0.00 44.80 4.20
216 217 9.249053 TGTGAATTGCTATAATAACCCTTGAAA 57.751 29.630 0.00 0.00 0.00 2.69
217 218 8.815565 TGTGAATTGCTATAATAACCCTTGAA 57.184 30.769 0.00 0.00 0.00 2.69
218 219 8.995027 ATGTGAATTGCTATAATAACCCTTGA 57.005 30.769 0.00 0.00 0.00 3.02
219 220 9.683069 GAATGTGAATTGCTATAATAACCCTTG 57.317 33.333 0.00 0.00 0.00 3.61
220 221 8.860088 GGAATGTGAATTGCTATAATAACCCTT 58.140 33.333 0.00 0.00 0.00 3.95
221 222 7.174946 CGGAATGTGAATTGCTATAATAACCCT 59.825 37.037 0.00 0.00 0.00 4.34
222 223 7.040686 ACGGAATGTGAATTGCTATAATAACCC 60.041 37.037 0.00 0.00 0.00 4.11
223 224 7.871853 ACGGAATGTGAATTGCTATAATAACC 58.128 34.615 0.00 0.00 0.00 2.85
240 241 1.089481 CCACGCTATGCACGGAATGT 61.089 55.000 0.00 0.00 34.00 2.71
241 242 0.809636 TCCACGCTATGCACGGAATG 60.810 55.000 0.00 0.00 34.00 2.67
242 243 0.530650 CTCCACGCTATGCACGGAAT 60.531 55.000 0.00 0.00 29.99 3.01
243 244 1.153647 CTCCACGCTATGCACGGAA 60.154 57.895 0.00 0.00 29.99 4.30
244 245 2.494445 CTCCACGCTATGCACGGA 59.506 61.111 0.00 0.00 34.00 4.69
245 246 2.586079 CCTCCACGCTATGCACGG 60.586 66.667 0.00 0.00 34.00 4.94
246 247 2.349969 TAGCCTCCACGCTATGCACG 62.350 60.000 0.00 0.00 40.39 5.34
247 248 1.441729 TAGCCTCCACGCTATGCAC 59.558 57.895 0.00 0.00 40.39 4.57
248 249 3.948702 TAGCCTCCACGCTATGCA 58.051 55.556 0.00 0.00 40.39 3.96
252 253 1.464376 GCTCCATAGCCTCCACGCTA 61.464 60.000 0.00 0.00 45.11 4.26
253 254 2.801631 GCTCCATAGCCTCCACGCT 61.802 63.158 0.00 0.00 43.40 5.07
254 255 2.280457 GCTCCATAGCCTCCACGC 60.280 66.667 0.00 0.00 43.40 5.34
263 264 5.176590 GCTAAGATTCGAGTTTGCTCCATAG 59.823 44.000 0.00 0.00 38.49 2.23
264 265 5.050490 GCTAAGATTCGAGTTTGCTCCATA 58.950 41.667 0.00 0.00 38.49 2.74
265 266 3.873952 GCTAAGATTCGAGTTTGCTCCAT 59.126 43.478 0.00 0.00 38.49 3.41
266 267 3.262420 GCTAAGATTCGAGTTTGCTCCA 58.738 45.455 0.00 0.00 38.49 3.86
267 268 2.282820 CGCTAAGATTCGAGTTTGCTCC 59.717 50.000 8.29 0.00 38.49 4.70
268 269 2.282820 CCGCTAAGATTCGAGTTTGCTC 59.717 50.000 8.29 0.00 38.35 4.26
269 270 2.271800 CCGCTAAGATTCGAGTTTGCT 58.728 47.619 8.29 0.00 0.00 3.91
270 271 1.327764 CCCGCTAAGATTCGAGTTTGC 59.672 52.381 0.00 0.00 0.00 3.68
271 272 1.327764 GCCCGCTAAGATTCGAGTTTG 59.672 52.381 0.00 0.00 0.00 2.93
272 273 1.066430 TGCCCGCTAAGATTCGAGTTT 60.066 47.619 0.00 0.00 0.00 2.66
273 274 0.535335 TGCCCGCTAAGATTCGAGTT 59.465 50.000 0.00 0.00 0.00 3.01
274 275 0.179108 GTGCCCGCTAAGATTCGAGT 60.179 55.000 0.00 0.00 0.00 4.18
275 276 0.103208 AGTGCCCGCTAAGATTCGAG 59.897 55.000 0.00 0.00 0.00 4.04
276 277 1.395635 TAGTGCCCGCTAAGATTCGA 58.604 50.000 0.00 0.00 0.00 3.71
277 278 2.440539 ATAGTGCCCGCTAAGATTCG 57.559 50.000 0.00 0.00 0.00 3.34
278 279 4.246458 CCTAATAGTGCCCGCTAAGATTC 58.754 47.826 0.00 0.00 0.00 2.52
279 280 3.557264 GCCTAATAGTGCCCGCTAAGATT 60.557 47.826 0.00 0.00 0.00 2.40
280 281 2.028020 GCCTAATAGTGCCCGCTAAGAT 60.028 50.000 0.00 0.00 0.00 2.40
281 282 1.343465 GCCTAATAGTGCCCGCTAAGA 59.657 52.381 0.00 0.00 0.00 2.10
282 283 1.608283 GGCCTAATAGTGCCCGCTAAG 60.608 57.143 0.00 0.00 41.97 2.18
283 284 0.395312 GGCCTAATAGTGCCCGCTAA 59.605 55.000 0.00 0.00 41.97 3.09
284 285 2.055299 GGCCTAATAGTGCCCGCTA 58.945 57.895 0.00 0.00 41.97 4.26
285 286 2.829592 GGCCTAATAGTGCCCGCT 59.170 61.111 0.00 0.00 41.97 5.52
290 291 1.221414 CGAAGCTGGCCTAATAGTGC 58.779 55.000 3.32 0.00 0.00 4.40
291 292 1.139058 ACCGAAGCTGGCCTAATAGTG 59.861 52.381 3.32 0.00 0.00 2.74
292 293 1.497161 ACCGAAGCTGGCCTAATAGT 58.503 50.000 3.32 0.00 0.00 2.12
293 294 2.622064 AACCGAAGCTGGCCTAATAG 57.378 50.000 3.32 0.00 0.00 1.73
294 295 3.359695 AAAACCGAAGCTGGCCTAATA 57.640 42.857 3.32 0.00 0.00 0.98
295 296 2.215942 AAAACCGAAGCTGGCCTAAT 57.784 45.000 3.32 0.00 0.00 1.73
296 297 1.989706 AAAAACCGAAGCTGGCCTAA 58.010 45.000 3.32 0.00 0.00 2.69
297 298 3.737702 AAAAACCGAAGCTGGCCTA 57.262 47.368 3.32 0.00 0.00 3.93
298 299 4.599036 AAAAACCGAAGCTGGCCT 57.401 50.000 3.32 0.00 0.00 5.19
354 355 9.474313 AGGACACAAATATAAAAGCAATAAGGA 57.526 29.630 0.00 0.00 0.00 3.36
390 391 9.278011 TCCCCATTTAGAAAAATATTGGTGAAT 57.722 29.630 0.00 0.00 33.45 2.57
391 392 8.671987 TCCCCATTTAGAAAAATATTGGTGAA 57.328 30.769 0.00 0.00 33.45 3.18
392 393 8.671987 TTCCCCATTTAGAAAAATATTGGTGA 57.328 30.769 0.00 0.00 33.45 4.02
600 601 8.780249 CCAGAAACTTAACCTCGAGAATTAAAA 58.220 33.333 15.71 0.00 0.00 1.52
601 602 8.152246 TCCAGAAACTTAACCTCGAGAATTAAA 58.848 33.333 15.71 0.00 0.00 1.52
602 603 7.673180 TCCAGAAACTTAACCTCGAGAATTAA 58.327 34.615 15.71 16.12 0.00 1.40
603 604 7.235935 TCCAGAAACTTAACCTCGAGAATTA 57.764 36.000 15.71 9.43 0.00 1.40
604 605 6.110411 TCCAGAAACTTAACCTCGAGAATT 57.890 37.500 15.71 10.49 0.00 2.17
605 606 5.740290 TCCAGAAACTTAACCTCGAGAAT 57.260 39.130 15.71 4.46 0.00 2.40
606 607 5.540400 TTCCAGAAACTTAACCTCGAGAA 57.460 39.130 15.71 0.00 0.00 2.87
607 608 5.245301 TGATTCCAGAAACTTAACCTCGAGA 59.755 40.000 15.71 0.00 0.00 4.04
608 609 5.348997 GTGATTCCAGAAACTTAACCTCGAG 59.651 44.000 5.13 5.13 0.00 4.04
609 610 5.235516 GTGATTCCAGAAACTTAACCTCGA 58.764 41.667 0.00 0.00 0.00 4.04
610 611 4.091509 CGTGATTCCAGAAACTTAACCTCG 59.908 45.833 0.00 0.00 0.00 4.63
611 612 4.142881 GCGTGATTCCAGAAACTTAACCTC 60.143 45.833 0.00 0.00 0.00 3.85
612 613 3.751698 GCGTGATTCCAGAAACTTAACCT 59.248 43.478 0.00 0.00 0.00 3.50
613 614 3.424433 CGCGTGATTCCAGAAACTTAACC 60.424 47.826 0.00 0.00 0.00 2.85
614 615 3.732943 CGCGTGATTCCAGAAACTTAAC 58.267 45.455 0.00 0.00 0.00 2.01
615 616 2.158841 GCGCGTGATTCCAGAAACTTAA 59.841 45.455 8.43 0.00 0.00 1.85
616 617 1.730064 GCGCGTGATTCCAGAAACTTA 59.270 47.619 8.43 0.00 0.00 2.24
617 618 0.517316 GCGCGTGATTCCAGAAACTT 59.483 50.000 8.43 0.00 0.00 2.66
618 619 1.626654 CGCGCGTGATTCCAGAAACT 61.627 55.000 24.19 0.00 0.00 2.66
619 620 1.225745 CGCGCGTGATTCCAGAAAC 60.226 57.895 24.19 0.00 0.00 2.78
620 621 1.623081 GACGCGCGTGATTCCAGAAA 61.623 55.000 42.90 0.00 0.00 2.52
621 622 2.048597 ACGCGCGTGATTCCAGAA 60.049 55.556 37.37 0.00 0.00 3.02
622 623 2.506217 GACGCGCGTGATTCCAGA 60.506 61.111 42.90 0.00 0.00 3.86
623 624 3.554692 GGACGCGCGTGATTCCAG 61.555 66.667 42.90 5.76 0.00 3.86
624 625 4.365505 TGGACGCGCGTGATTCCA 62.366 61.111 42.90 35.51 35.71 3.53
625 626 3.849953 GTGGACGCGCGTGATTCC 61.850 66.667 42.90 33.28 0.00 3.01
626 627 4.191485 CGTGGACGCGCGTGATTC 62.191 66.667 42.90 25.58 0.00 2.52
648 649 4.025401 CCGGCGAGTGGTTTGTGC 62.025 66.667 9.30 0.00 0.00 4.57
678 679 4.357947 TGACGTCTCTGGGCGTGC 62.358 66.667 17.92 0.00 41.70 5.34
709 710 2.807045 GAGGCGAGTGTCTGCGTG 60.807 66.667 0.00 0.00 0.00 5.34
813 841 4.154347 GACGCTGGAGCCTGGAGG 62.154 72.222 0.00 0.00 37.91 4.30
814 842 4.154347 GGACGCTGGAGCCTGGAG 62.154 72.222 0.00 0.00 37.91 3.86
984 1025 3.842923 ATCCGCGTCTGCCTGGAG 61.843 66.667 4.92 0.00 34.64 3.86
985 1026 4.147449 CATCCGCGTCTGCCTGGA 62.147 66.667 4.92 0.00 38.08 3.86
1074 1115 0.179065 CCTGCTTCCGCATGATCTCA 60.179 55.000 0.00 0.00 46.74 3.27
1183 1224 2.885644 CGGGTCGAAGATGCCGTG 60.886 66.667 0.00 0.00 40.67 4.94
1242 1283 1.229853 GGAAGGGAAGGTGGAGGGA 60.230 63.158 0.00 0.00 0.00 4.20
1243 1284 1.229984 AGGAAGGGAAGGTGGAGGG 60.230 63.158 0.00 0.00 0.00 4.30
1280 1341 4.701765 AGATTGGGAAGAACAGATCGATG 58.298 43.478 0.54 0.00 0.00 3.84
1391 1501 2.288152 TGAATCCCTGTTTTCAAAGCGC 60.288 45.455 0.00 0.00 0.00 5.92
1393 1503 3.308530 CGTGAATCCCTGTTTTCAAAGC 58.691 45.455 0.00 0.00 33.90 3.51
1459 1569 2.449137 AGGGCCCTTCTTTGATCATG 57.551 50.000 22.28 0.00 0.00 3.07
1569 1679 5.960113 TGGTATTACCATGACAATTTGCAC 58.040 37.500 11.62 0.00 44.79 4.57
1596 1706 1.000827 AGTGCGCCAGATAGAATCGAG 60.001 52.381 4.18 0.00 0.00 4.04
1646 1756 6.711277 TGATGTGGTAAGGCTATCATAATCC 58.289 40.000 0.00 0.00 0.00 3.01
1651 1761 5.455326 GGAGTTGATGTGGTAAGGCTATCAT 60.455 44.000 0.00 0.00 0.00 2.45
1657 1767 2.290323 ACTGGAGTTGATGTGGTAAGGC 60.290 50.000 0.00 0.00 0.00 4.35
1714 1824 2.019249 TCCAGCAGCAATTCAGCATAC 58.981 47.619 0.00 0.00 36.85 2.39
1730 1840 4.397417 AGCTAAATAAAGTTGCAGCTCCAG 59.603 41.667 2.60 0.00 34.35 3.86
1732 1842 4.914540 GAGCTAAATAAAGTTGCAGCTCC 58.085 43.478 2.60 0.00 45.87 4.70
1743 1853 5.302360 ACACAGAACGGTGAGCTAAATAAA 58.698 37.500 11.47 0.00 41.32 1.40
1746 1856 3.402628 ACACAGAACGGTGAGCTAAAT 57.597 42.857 11.47 0.00 41.32 1.40
1810 1920 3.522553 GCCGCCTATGATTATGAGGTAC 58.477 50.000 0.00 0.00 32.53 3.34
1813 1923 1.645034 CGCCGCCTATGATTATGAGG 58.355 55.000 0.00 0.00 0.00 3.86
1867 1977 4.498009 GGGATTTTGATCATGTTGGCGTAG 60.498 45.833 0.00 0.00 0.00 3.51
1911 2021 6.535508 GGTCTGTGAAGAACATATGGAAGTAC 59.464 42.308 7.80 0.09 38.39 2.73
1913 2023 5.249393 AGGTCTGTGAAGAACATATGGAAGT 59.751 40.000 7.80 0.00 38.39 3.01
1915 2025 5.013079 ACAGGTCTGTGAAGAACATATGGAA 59.987 40.000 7.80 0.00 43.11 3.53
1916 2026 4.532126 ACAGGTCTGTGAAGAACATATGGA 59.468 41.667 7.80 0.00 43.11 3.41
1917 2027 4.836825 ACAGGTCTGTGAAGAACATATGG 58.163 43.478 7.80 0.00 43.11 2.74
1918 2028 6.169094 AGAACAGGTCTGTGAAGAACATATG 58.831 40.000 4.22 0.00 44.13 1.78
1937 2047 3.004629 CAGCATGGCAACTGTAAAGAACA 59.995 43.478 11.57 0.00 36.42 3.18
1981 2097 0.964358 CCAAGGAAGCAGCTGGGAAG 60.964 60.000 17.12 0.00 0.00 3.46
1985 2101 3.437795 CGCCAAGGAAGCAGCTGG 61.438 66.667 17.12 0.00 0.00 4.85
1989 2107 2.281761 ACACCGCCAAGGAAGCAG 60.282 61.111 0.00 0.00 45.00 4.24
2012 2130 9.678260 AATAAATATGATAAGGAGACAGCCATC 57.322 33.333 0.00 0.00 0.00 3.51
2053 2171 6.126911 TGGAACATAACTGCACATGAGGTATA 60.127 38.462 0.00 0.00 0.00 1.47
2054 2172 5.126067 GGAACATAACTGCACATGAGGTAT 58.874 41.667 0.00 0.00 0.00 2.73
2058 2176 4.005650 ACTGGAACATAACTGCACATGAG 58.994 43.478 0.00 0.00 38.20 2.90
2159 2277 5.012975 AGGATGCATAAAGCCTTTGGAAAAA 59.987 36.000 0.00 0.00 44.83 1.94
2160 2278 4.531732 AGGATGCATAAAGCCTTTGGAAAA 59.468 37.500 0.00 0.00 44.83 2.29
2161 2279 4.095946 AGGATGCATAAAGCCTTTGGAAA 58.904 39.130 0.00 0.00 44.83 3.13
2174 2292 4.885325 TGAGTACTGTCGTTAGGATGCATA 59.115 41.667 0.00 0.00 0.00 3.14
2178 2296 5.500645 TCATGAGTACTGTCGTTAGGATG 57.499 43.478 0.00 0.00 0.00 3.51
2180 2298 5.970317 TTTCATGAGTACTGTCGTTAGGA 57.030 39.130 0.00 0.00 0.00 2.94
2205 2323 5.329399 AGAATATATCGAGCTCTTGGAGGT 58.671 41.667 12.85 0.00 43.43 3.85
2206 2324 5.913137 AGAATATATCGAGCTCTTGGAGG 57.087 43.478 12.85 0.00 0.00 4.30
2207 2325 8.681806 TCATTAGAATATATCGAGCTCTTGGAG 58.318 37.037 12.85 0.00 0.00 3.86
2222 2340 5.379187 TGCTGTGCACCATCATTAGAATAT 58.621 37.500 15.69 0.00 31.71 1.28
2238 2356 5.770162 AGTATCCCCTAAAAATATGCTGTGC 59.230 40.000 0.00 0.00 0.00 4.57
2239 2357 7.823745 AAGTATCCCCTAAAAATATGCTGTG 57.176 36.000 0.00 0.00 0.00 3.66
2250 2368 6.386050 CCTTCCTCTGTAAAGTATCCCCTAAA 59.614 42.308 0.00 0.00 0.00 1.85
2261 2379 8.754080 CCTATGGTATATCCTTCCTCTGTAAAG 58.246 40.741 0.00 0.00 37.07 1.85
2277 2395 9.942526 ACTATGTCATGATGATCCTATGGTATA 57.057 33.333 0.00 0.00 0.00 1.47
2320 2439 7.465111 GCTTGATCTCACACACACACAATATAG 60.465 40.741 0.00 0.00 0.00 1.31
2332 2451 8.565896 AATATGTTAAAGCTTGATCTCACACA 57.434 30.769 0.00 0.00 0.00 3.72
2363 2482 1.419381 ACCCCCAAAAATGGTGTCAC 58.581 50.000 0.00 0.00 0.00 3.67
2375 2494 5.662208 TGACTATCGACTAAAATACCCCCAA 59.338 40.000 0.00 0.00 0.00 4.12
2377 2496 5.796424 TGACTATCGACTAAAATACCCCC 57.204 43.478 0.00 0.00 0.00 5.40
2470 2607 1.012486 GGTCCCGTGTTACTTGCTCG 61.012 60.000 0.00 0.00 0.00 5.03
2619 2756 5.116180 TGGAAATATGAGAGCTTACCAACG 58.884 41.667 0.00 0.00 0.00 4.10
2643 2780 2.362077 GTTCAGAGGAGCTTTGGCAAAA 59.638 45.455 14.43 0.00 41.70 2.44
2647 2784 1.301677 CCGTTCAGAGGAGCTTTGGC 61.302 60.000 0.00 0.00 39.06 4.52
2672 2809 6.114187 TGGATCGATATTCACTGCCTAAAT 57.886 37.500 0.00 0.00 0.00 1.40
2723 2860 7.633193 TTACCTACTGATCTCTTCTGAACTC 57.367 40.000 0.00 0.00 0.00 3.01
2753 2891 7.646314 CCTCCAATCACAAATATCTGATGTTC 58.354 38.462 0.00 0.00 0.00 3.18
2759 2897 4.037208 GTGGCCTCCAATCACAAATATCTG 59.963 45.833 3.32 0.00 34.18 2.90
2783 2921 4.689612 TCCAGCTATAGTTTGTGATCCC 57.310 45.455 0.84 0.00 0.00 3.85
2796 2934 8.408601 CAATACTGCAGTTTATTTTCCAGCTAT 58.591 33.333 27.06 3.75 0.00 2.97
2829 2967 9.551734 TCACATATCAAACTCTGAATTAGATGG 57.448 33.333 0.00 0.00 37.67 3.51
2835 2973 7.362401 GCAGGTTCACATATCAAACTCTGAATT 60.362 37.037 0.00 0.00 37.67 2.17
2842 2980 4.910195 TCAGCAGGTTCACATATCAAACT 58.090 39.130 0.00 0.00 0.00 2.66
2846 2984 4.284829 TGTTCAGCAGGTTCACATATCA 57.715 40.909 0.00 0.00 0.00 2.15
2852 2990 5.392380 CCAGAAATATGTTCAGCAGGTTCAC 60.392 44.000 0.00 0.00 0.00 3.18
2855 2993 4.922206 TCCAGAAATATGTTCAGCAGGTT 58.078 39.130 0.00 0.00 0.00 3.50
2858 2996 5.128205 TCCATCCAGAAATATGTTCAGCAG 58.872 41.667 0.00 0.00 0.00 4.24
2886 3211 7.042254 CGCTTAAACCCTACGAGCTATTTAAAT 60.042 37.037 5.89 5.89 0.00 1.40
2889 3214 5.067674 TCGCTTAAACCCTACGAGCTATTTA 59.932 40.000 0.00 0.00 0.00 1.40
2899 3224 2.028748 TGACAGGTCGCTTAAACCCTAC 60.029 50.000 0.00 0.00 37.52 3.18
2917 3243 2.285977 ACGGTGAACCAAGAAACTGAC 58.714 47.619 0.00 0.00 35.14 3.51
2936 3262 2.096713 GGCGTTCATATCGATGCAGAAC 60.097 50.000 20.37 20.37 36.22 3.01
2959 3285 9.982291 GCGTGATTTTACATCAGAAAGTTTATA 57.018 29.630 0.00 0.00 0.00 0.98
2960 3286 8.730680 AGCGTGATTTTACATCAGAAAGTTTAT 58.269 29.630 0.00 0.00 0.00 1.40
2971 3297 6.747659 AAACAACAAGCGTGATTTTACATC 57.252 33.333 6.65 0.00 0.00 3.06
2973 3299 7.306283 GCATAAAACAACAAGCGTGATTTTACA 60.306 33.333 6.65 0.00 30.43 2.41
3081 3407 4.087892 GCTTCAGCCTCGGCCTCA 62.088 66.667 0.00 0.00 43.17 3.86
3138 3464 1.561542 AGGCACTAATCCTTGAGGTGG 59.438 52.381 0.00 0.00 36.02 4.61
3174 3500 4.152402 GCCGTGTGATTTGCCTATATACTG 59.848 45.833 0.00 0.00 0.00 2.74
3175 3501 4.040461 AGCCGTGTGATTTGCCTATATACT 59.960 41.667 0.00 0.00 0.00 2.12
3177 3503 4.202315 ACAGCCGTGTGATTTGCCTATATA 60.202 41.667 0.00 0.00 34.75 0.86
3195 3521 2.814336 CAAAACTAAGGAGGTCACAGCC 59.186 50.000 0.00 0.00 0.00 4.85
3235 3561 7.628501 AGGAACGGAGGGAGTAATAAATAAT 57.371 36.000 0.00 0.00 0.00 1.28
3236 3562 8.551682 TTAGGAACGGAGGGAGTAATAAATAA 57.448 34.615 0.00 0.00 0.00 1.40
3237 3563 8.551682 TTTAGGAACGGAGGGAGTAATAAATA 57.448 34.615 0.00 0.00 0.00 1.40
3238 3564 7.441903 TTTAGGAACGGAGGGAGTAATAAAT 57.558 36.000 0.00 0.00 0.00 1.40
3240 3566 8.731591 ATATTTAGGAACGGAGGGAGTAATAA 57.268 34.615 0.00 0.00 0.00 1.40
3242 3568 7.628501 AATATTTAGGAACGGAGGGAGTAAT 57.371 36.000 0.00 0.00 0.00 1.89
3243 3569 7.092757 ACAAATATTTAGGAACGGAGGGAGTAA 60.093 37.037 0.00 0.00 0.00 2.24
3245 3571 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3246 3572 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3247 3573 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3248 3574 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3249 3575 7.120726 ACAAAGACAAATATTTAGGAACGGAGG 59.879 37.037 0.00 0.00 0.00 4.30
3250 3576 7.962918 CACAAAGACAAATATTTAGGAACGGAG 59.037 37.037 0.00 0.00 0.00 4.63
3251 3577 7.662258 TCACAAAGACAAATATTTAGGAACGGA 59.338 33.333 0.00 0.00 0.00 4.69
3252 3578 7.812648 TCACAAAGACAAATATTTAGGAACGG 58.187 34.615 0.00 0.00 0.00 4.44
3253 3579 9.329913 CTTCACAAAGACAAATATTTAGGAACG 57.670 33.333 0.00 0.00 34.14 3.95
3266 3592 9.734620 CACTTATTGAAATCTTCACAAAGACAA 57.265 29.630 13.10 0.00 44.13 3.18
3267 3593 9.119418 TCACTTATTGAAATCTTCACAAAGACA 57.881 29.630 13.10 0.00 44.13 3.41
3268 3594 9.387123 GTCACTTATTGAAATCTTCACAAAGAC 57.613 33.333 13.10 7.52 39.09 3.01
3269 3595 9.342308 AGTCACTTATTGAAATCTTCACAAAGA 57.658 29.630 13.10 0.00 39.95 2.52
3272 3598 9.554395 TGTAGTCACTTATTGAAATCTTCACAA 57.446 29.630 0.00 0.00 39.87 3.33
3273 3599 9.725019 ATGTAGTCACTTATTGAAATCTTCACA 57.275 29.630 0.00 0.00 39.87 3.58
3277 3603 9.871238 ACGTATGTAGTCACTTATTGAAATCTT 57.129 29.630 0.00 0.00 35.39 2.40
3295 3621 7.979537 AGATTCACTCATTTTGCTACGTATGTA 59.020 33.333 0.00 0.00 0.00 2.29
3296 3622 6.818644 AGATTCACTCATTTTGCTACGTATGT 59.181 34.615 0.00 0.00 0.00 2.29
3297 3623 7.239166 AGATTCACTCATTTTGCTACGTATG 57.761 36.000 0.00 0.00 0.00 2.39
3298 3624 7.979537 TGTAGATTCACTCATTTTGCTACGTAT 59.020 33.333 0.00 0.00 31.97 3.06
3299 3625 7.317390 TGTAGATTCACTCATTTTGCTACGTA 58.683 34.615 0.00 0.00 31.97 3.57
3300 3626 6.163476 TGTAGATTCACTCATTTTGCTACGT 58.837 36.000 0.00 0.00 31.97 3.57
3301 3627 6.647212 TGTAGATTCACTCATTTTGCTACG 57.353 37.500 0.00 0.00 31.97 3.51
3302 3628 8.887717 AGAATGTAGATTCACTCATTTTGCTAC 58.112 33.333 14.46 0.00 40.59 3.58
3304 3630 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
3329 3655 9.890629 ACATGCGGATGTATATAGACATATTTT 57.109 29.630 21.92 0.00 41.27 1.82
3330 3656 9.317936 CACATGCGGATGTATATAGACATATTT 57.682 33.333 22.75 0.00 41.12 1.40
3331 3657 7.928167 CCACATGCGGATGTATATAGACATATT 59.072 37.037 22.75 0.00 41.12 1.28
3332 3658 7.069950 ACCACATGCGGATGTATATAGACATAT 59.930 37.037 22.75 0.80 41.12 1.78
3333 3659 6.379988 ACCACATGCGGATGTATATAGACATA 59.620 38.462 22.75 0.00 41.12 2.29
3334 3660 5.187772 ACCACATGCGGATGTATATAGACAT 59.812 40.000 22.75 12.70 41.12 3.06
3335 3661 4.526650 ACCACATGCGGATGTATATAGACA 59.473 41.667 22.75 2.07 41.12 3.41
3336 3662 5.073311 ACCACATGCGGATGTATATAGAC 57.927 43.478 22.75 0.00 41.12 2.59
3337 3663 5.163550 GCTACCACATGCGGATGTATATAGA 60.164 44.000 22.75 4.43 41.12 1.98
3338 3664 5.043903 GCTACCACATGCGGATGTATATAG 58.956 45.833 22.75 21.41 41.12 1.31
3339 3665 4.142026 GGCTACCACATGCGGATGTATATA 60.142 45.833 22.75 13.28 41.12 0.86
3340 3666 3.369471 GGCTACCACATGCGGATGTATAT 60.369 47.826 22.75 12.86 41.12 0.86
3341 3667 2.028476 GGCTACCACATGCGGATGTATA 60.028 50.000 22.75 15.93 41.12 1.47
3342 3668 1.270839 GGCTACCACATGCGGATGTAT 60.271 52.381 22.75 15.65 41.12 2.29
3343 3669 0.105964 GGCTACCACATGCGGATGTA 59.894 55.000 22.75 6.53 41.12 2.29
3344 3670 1.153168 GGCTACCACATGCGGATGT 60.153 57.895 17.64 17.64 44.08 3.06
3345 3671 0.535780 ATGGCTACCACATGCGGATG 60.536 55.000 16.07 16.07 35.80 3.51
3346 3672 0.183492 AATGGCTACCACATGCGGAT 59.817 50.000 6.80 0.00 35.80 4.18
3347 3673 0.034574 AAATGGCTACCACATGCGGA 60.035 50.000 6.80 0.00 35.80 5.54
3348 3674 0.101040 CAAATGGCTACCACATGCGG 59.899 55.000 0.00 0.00 35.80 5.69
3349 3675 1.093972 TCAAATGGCTACCACATGCG 58.906 50.000 0.00 0.00 35.80 4.73
3350 3676 3.591196 TTTCAAATGGCTACCACATGC 57.409 42.857 0.00 0.00 35.80 4.06
3351 3677 7.281040 AGATATTTCAAATGGCTACCACATG 57.719 36.000 0.00 0.00 35.80 3.21
3352 3678 8.995027 TTAGATATTTCAAATGGCTACCACAT 57.005 30.769 0.00 0.00 35.80 3.21
3353 3679 8.815565 TTTAGATATTTCAAATGGCTACCACA 57.184 30.769 0.00 0.00 35.80 4.17
3377 3703 9.893305 CACTCCGTTTCTAAATATTTGTCTTTT 57.107 29.630 11.05 0.00 0.00 2.27
3378 3704 9.280174 TCACTCCGTTTCTAAATATTTGTCTTT 57.720 29.630 11.05 0.00 0.00 2.52
3379 3705 8.842358 TCACTCCGTTTCTAAATATTTGTCTT 57.158 30.769 11.05 0.00 0.00 3.01
3380 3706 8.095169 ACTCACTCCGTTTCTAAATATTTGTCT 58.905 33.333 11.05 0.00 0.00 3.41
3381 3707 8.252964 ACTCACTCCGTTTCTAAATATTTGTC 57.747 34.615 11.05 0.00 0.00 3.18
3382 3708 9.148104 GTACTCACTCCGTTTCTAAATATTTGT 57.852 33.333 11.05 0.00 0.00 2.83
3383 3709 9.367444 AGTACTCACTCCGTTTCTAAATATTTG 57.633 33.333 11.05 1.65 0.00 2.32
3384 3710 9.583765 GAGTACTCACTCCGTTTCTAAATATTT 57.416 33.333 18.20 5.89 44.72 1.40
3401 3727 9.497030 CGATAGCTATCATTATTGAGTACTCAC 57.503 37.037 28.67 9.60 34.73 3.51
3402 3728 9.232473 ACGATAGCTATCATTATTGAGTACTCA 57.768 33.333 28.67 21.74 42.67 3.41
3403 3729 9.710979 GACGATAGCTATCATTATTGAGTACTC 57.289 37.037 28.67 16.32 42.67 2.59
3404 3730 9.456147 AGACGATAGCTATCATTATTGAGTACT 57.544 33.333 28.67 13.74 42.67 2.73
3407 3733 8.402472 GCTAGACGATAGCTATCATTATTGAGT 58.598 37.037 28.67 17.44 42.67 3.41
3408 3734 8.781067 GCTAGACGATAGCTATCATTATTGAG 57.219 38.462 28.67 17.45 42.67 3.02
3501 3827 7.769044 AGTGCCCTATTTGTTAATACAGTACTG 59.231 37.037 21.44 21.44 35.28 2.74
3529 3855 7.558991 CGGATAATATGCAAATATCAGCGTAG 58.441 38.462 14.78 0.00 35.87 3.51
3530 3856 6.019075 GCGGATAATATGCAAATATCAGCGTA 60.019 38.462 18.48 4.37 37.45 4.42
3531 3857 5.220662 GCGGATAATATGCAAATATCAGCGT 60.221 40.000 18.48 0.52 37.45 5.07
3532 3858 5.200454 GCGGATAATATGCAAATATCAGCG 58.800 41.667 18.48 13.70 37.45 5.18
3543 3869 1.421410 CGAGGCGGCGGATAATATGC 61.421 60.000 9.78 0.00 0.00 3.14
3558 3884 1.143305 GCATCCAACGATCATCGAGG 58.857 55.000 15.60 14.98 43.74 4.63
3566 3892 2.203070 GCTCGGGCATCCAACGAT 60.203 61.111 0.00 0.00 38.54 3.73
3591 3917 1.067846 GTGCGGACACTACATCAGACA 60.068 52.381 0.63 0.00 43.85 3.41
3610 3936 0.038166 AACGAATGGACATGCAGGGT 59.962 50.000 2.31 0.00 0.00 4.34
3613 3939 3.063997 GGAAGTAACGAATGGACATGCAG 59.936 47.826 0.00 0.00 0.00 4.41
3621 3947 1.129811 GTTGCGGGAAGTAACGAATGG 59.870 52.381 0.00 0.00 35.83 3.16
3651 3977 4.445385 GGCATGCAGTCTTGTTTTTGTAAG 59.555 41.667 21.36 0.00 0.00 2.34
3654 3980 2.483538 GGGCATGCAGTCTTGTTTTTGT 60.484 45.455 21.36 0.00 0.00 2.83
3657 3983 1.412079 TGGGCATGCAGTCTTGTTTT 58.588 45.000 21.36 0.00 0.00 2.43
3677 4003 4.024387 GTGTTCGTTGCAGGAAGTAATGAA 60.024 41.667 2.84 0.00 42.90 2.57
3689 4015 5.128992 TCTGTAATAGAGTGTTCGTTGCA 57.871 39.130 0.00 0.00 0.00 4.08
3695 4021 7.656137 TGGTCTTGTTTCTGTAATAGAGTGTTC 59.344 37.037 0.00 0.00 36.61 3.18
3699 4025 9.823647 CATATGGTCTTGTTTCTGTAATAGAGT 57.176 33.333 0.00 0.00 36.61 3.24
3704 4030 5.594317 GGGCATATGGTCTTGTTTCTGTAAT 59.406 40.000 4.56 0.00 0.00 1.89
3717 4043 2.102588 AGTAACGAGTGGGCATATGGTC 59.897 50.000 4.56 0.00 0.00 4.02
3722 4048 1.117150 GGGAGTAACGAGTGGGCATA 58.883 55.000 0.00 0.00 0.00 3.14
3728 4054 1.012486 GTTGCGGGGAGTAACGAGTG 61.012 60.000 0.00 0.00 35.83 3.51
3767 4252 3.134804 GGTGCTCCCTGCTATTTCTCTTA 59.865 47.826 0.00 0.00 43.37 2.10
3894 4379 2.248086 GACCGGGGCTTATCCAACGT 62.248 60.000 6.32 0.00 35.73 3.99
4036 4555 1.351153 GTCTTGCTAGAGGCGTGTTC 58.649 55.000 0.00 0.00 45.43 3.18
4047 4566 2.571757 CACTCCCGCGTCTTGCTA 59.428 61.111 4.92 0.00 43.27 3.49
4051 4570 2.574955 AAGAGCACTCCCGCGTCTT 61.575 57.895 4.92 2.32 36.85 3.01
4053 4572 2.811317 CAAGAGCACTCCCGCGTC 60.811 66.667 4.92 0.00 36.85 5.19
4054 4573 3.303135 TCAAGAGCACTCCCGCGT 61.303 61.111 4.92 0.00 36.85 6.01
4055 4574 2.811317 GTCAAGAGCACTCCCGCG 60.811 66.667 0.00 0.00 36.85 6.46
4112 4631 4.596180 GATTGCGCGCACCCATCG 62.596 66.667 36.72 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.