Multiple sequence alignment - TraesCS2A01G317000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G317000 chr2A 100.000 7665 0 0 1 7665 542647487 542655151 0.000000e+00 14155.0
1 TraesCS2A01G317000 chr2A 98.305 59 1 0 144 202 542647671 542647729 3.780000e-18 104.0
2 TraesCS2A01G317000 chr2A 100.000 41 0 0 2089 2129 542649543 542649583 8.250000e-10 76.8
3 TraesCS2A01G317000 chr2A 100.000 41 0 0 2057 2097 542649575 542649615 8.250000e-10 76.8
4 TraesCS2A01G317000 chr2A 100.000 36 0 0 4579 4614 542652015 542652050 4.960000e-07 67.6
5 TraesCS2A01G317000 chr2A 100.000 36 0 0 4529 4564 542652065 542652100 4.960000e-07 67.6
6 TraesCS2A01G317000 chr2B 94.886 4654 165 30 2280 6897 478905854 478901238 0.000000e+00 7208.0
7 TraesCS2A01G317000 chr2B 88.453 866 40 21 748 1579 478907727 478906888 0.000000e+00 990.0
8 TraesCS2A01G317000 chr2B 95.185 540 20 3 7132 7665 478900496 478899957 0.000000e+00 848.0
9 TraesCS2A01G317000 chr2B 86.770 257 19 6 226 475 478908517 478908269 9.800000e-69 272.0
10 TraesCS2A01G317000 chr2B 89.474 171 8 1 1 161 478908670 478908500 2.800000e-49 207.0
11 TraesCS2A01G317000 chr2B 92.157 51 2 1 4564 4614 478903613 478903565 3.840000e-08 71.3
12 TraesCS2A01G317000 chr2D 95.043 3692 110 22 2089 5757 404388773 404392414 0.000000e+00 5736.0
13 TraesCS2A01G317000 chr2D 92.669 1405 42 17 5746 7125 404393318 404394686 0.000000e+00 1967.0
14 TraesCS2A01G317000 chr2D 87.875 1501 55 38 674 2097 404387363 404388813 0.000000e+00 1646.0
15 TraesCS2A01G317000 chr2D 94.150 547 27 3 7122 7665 404394847 404395391 0.000000e+00 828.0
16 TraesCS2A01G317000 chr2D 93.023 172 8 3 226 397 404384718 404384885 1.650000e-61 248.0
17 TraesCS2A01G317000 chr2D 93.210 162 10 1 1 161 404384574 404384735 3.580000e-58 237.0
18 TraesCS2A01G317000 chr2D 92.157 51 1 2 4564 4614 404391176 404391223 1.380000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G317000 chr2A 542647487 542655151 7664 False 14155.000000 14155 100.000000 1 7665 1 chr2A.!!$F1 7664
1 TraesCS2A01G317000 chr2B 478899957 478908670 8713 True 1599.383333 7208 91.154167 1 7665 6 chr2B.!!$R1 7664
2 TraesCS2A01G317000 chr2D 404384574 404395391 10817 False 1533.057143 5736 92.589571 1 7665 7 chr2D.!!$F1 7664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 2661 0.035056 AATGGAGGAAAGACCCGCAG 60.035 55.000 0.0 0.0 40.05 5.18 F
598 2825 0.036306 ACAGGGGGTTGTGTCGATTC 59.964 55.000 0.0 0.0 0.00 2.52 F
2098 5094 0.104462 TAGTAGCTGCCCCATCCCAT 60.104 55.000 0.0 0.0 0.00 4.00 F
2893 5959 0.249573 CTGCTTGGTTGCTTGTTGGG 60.250 55.000 0.0 0.0 0.00 4.12 F
4417 7498 0.106519 AGGGTGGTTGCATGGCTATC 60.107 55.000 0.0 0.0 0.00 2.08 F
6254 10251 1.880340 CGATCTGGGAAGCGAGCAC 60.880 63.158 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 5089 0.033503 TAGGCGAGAGACACATGGGA 60.034 55.0 0.00 0.00 46.78 4.37 R
2260 5303 0.250338 GCGTTGGGTTGACTCTTCCT 60.250 55.0 0.00 0.00 0.00 3.36 R
3506 6577 0.523072 CCAGTTTTGCACGGAGATGG 59.477 55.0 0.00 0.00 0.00 3.51 R
4477 7558 0.623723 GGCAGGAAACCTATCCACCA 59.376 55.0 0.00 0.00 42.27 4.17 R
6347 10344 0.955428 TTGCTGGAGATTCCACACGC 60.955 55.0 0.00 0.00 42.67 5.34 R
7306 11886 0.311165 CTACCGAGCGTACATCTGGG 59.689 60.0 10.36 10.36 35.81 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 4.814771 AGTCGACCAAGTAAGAAAGGTTTG 59.185 41.667 13.01 0.00 33.77 2.93
90 92 7.320399 ACCAAGTAAGAAAGGTTTGAAACAAG 58.680 34.615 10.53 0.00 0.00 3.16
148 160 4.561731 AGCGTCGCTCTCTGAAAC 57.438 55.556 15.47 0.00 30.62 2.78
149 161 1.660355 AGCGTCGCTCTCTGAAACA 59.340 52.632 15.47 0.00 30.62 2.83
150 162 0.387878 AGCGTCGCTCTCTGAAACAG 60.388 55.000 15.47 0.00 30.62 3.16
151 163 0.387367 GCGTCGCTCTCTGAAACAGA 60.387 55.000 10.68 0.00 38.25 3.41
152 164 1.332178 CGTCGCTCTCTGAAACAGAC 58.668 55.000 0.00 0.00 35.39 3.51
153 165 1.332178 GTCGCTCTCTGAAACAGACG 58.668 55.000 0.00 0.00 35.39 4.18
154 166 0.387367 TCGCTCTCTGAAACAGACGC 60.387 55.000 0.00 0.00 35.39 5.19
155 167 1.347817 CGCTCTCTGAAACAGACGCC 61.348 60.000 0.00 0.00 35.39 5.68
156 168 1.016653 GCTCTCTGAAACAGACGCCC 61.017 60.000 0.00 0.00 35.39 6.13
157 169 0.734253 CTCTCTGAAACAGACGCCCG 60.734 60.000 0.00 0.00 35.39 6.13
158 170 1.738099 CTCTGAAACAGACGCCCGG 60.738 63.158 0.00 0.00 35.39 5.73
159 171 3.423154 CTGAAACAGACGCCCGGC 61.423 66.667 0.00 0.00 32.44 6.13
160 172 4.243008 TGAAACAGACGCCCGGCA 62.243 61.111 10.77 0.00 0.00 5.69
161 173 3.723348 GAAACAGACGCCCGGCAC 61.723 66.667 10.77 2.70 0.00 5.01
162 174 4.250305 AAACAGACGCCCGGCACT 62.250 61.111 10.77 5.23 0.00 4.40
163 175 3.767630 AAACAGACGCCCGGCACTT 62.768 57.895 10.77 0.00 0.00 3.16
164 176 4.681978 ACAGACGCCCGGCACTTC 62.682 66.667 10.77 2.30 0.00 3.01
169 181 4.697756 CGCCCGGCACTTCCTCAA 62.698 66.667 10.77 0.00 0.00 3.02
170 182 2.282180 GCCCGGCACTTCCTCAAA 60.282 61.111 3.91 0.00 0.00 2.69
171 183 1.901464 GCCCGGCACTTCCTCAAAA 60.901 57.895 3.91 0.00 0.00 2.44
172 184 1.460273 GCCCGGCACTTCCTCAAAAA 61.460 55.000 3.91 0.00 0.00 1.94
173 185 1.256812 CCCGGCACTTCCTCAAAAAT 58.743 50.000 0.00 0.00 0.00 1.82
174 186 2.442413 CCCGGCACTTCCTCAAAAATA 58.558 47.619 0.00 0.00 0.00 1.40
175 187 2.823154 CCCGGCACTTCCTCAAAAATAA 59.177 45.455 0.00 0.00 0.00 1.40
176 188 3.447229 CCCGGCACTTCCTCAAAAATAAT 59.553 43.478 0.00 0.00 0.00 1.28
177 189 4.642885 CCCGGCACTTCCTCAAAAATAATA 59.357 41.667 0.00 0.00 0.00 0.98
178 190 5.126384 CCCGGCACTTCCTCAAAAATAATAA 59.874 40.000 0.00 0.00 0.00 1.40
179 191 6.183360 CCCGGCACTTCCTCAAAAATAATAAT 60.183 38.462 0.00 0.00 0.00 1.28
180 192 7.013846 CCCGGCACTTCCTCAAAAATAATAATA 59.986 37.037 0.00 0.00 0.00 0.98
181 193 8.410141 CCGGCACTTCCTCAAAAATAATAATAA 58.590 33.333 0.00 0.00 0.00 1.40
182 194 9.796120 CGGCACTTCCTCAAAAATAATAATAAA 57.204 29.630 0.00 0.00 0.00 1.40
197 209 9.744468 AATAATAATAAAATGAAACAGACGCCC 57.256 29.630 0.00 0.00 0.00 6.13
198 210 3.757745 ATAAAATGAAACAGACGCCCG 57.242 42.857 0.00 0.00 0.00 6.13
199 211 0.596082 AAAATGAAACAGACGCCCGG 59.404 50.000 0.00 0.00 0.00 5.73
200 212 1.862602 AAATGAAACAGACGCCCGGC 61.863 55.000 0.00 0.00 0.00 6.13
201 213 3.545124 ATGAAACAGACGCCCGGCA 62.545 57.895 10.77 0.00 0.00 5.69
202 214 3.723348 GAAACAGACGCCCGGCAC 61.723 66.667 10.77 2.70 0.00 5.01
203 215 4.250305 AAACAGACGCCCGGCACT 62.250 61.111 10.77 5.23 0.00 4.40
204 216 3.767630 AAACAGACGCCCGGCACTT 62.768 57.895 10.77 0.00 0.00 3.16
205 217 4.681978 ACAGACGCCCGGCACTTC 62.682 66.667 10.77 2.30 0.00 3.01
210 222 4.697756 CGCCCGGCACTTCCTCAA 62.698 66.667 10.77 0.00 0.00 3.02
211 223 2.282180 GCCCGGCACTTCCTCAAA 60.282 61.111 3.91 0.00 0.00 2.69
212 224 1.901464 GCCCGGCACTTCCTCAAAA 60.901 57.895 3.91 0.00 0.00 2.44
213 225 1.460273 GCCCGGCACTTCCTCAAAAA 61.460 55.000 3.91 0.00 0.00 1.94
269 281 0.947244 GGATGAAGCCATACGCCAAG 59.053 55.000 0.00 0.00 38.78 3.61
286 298 2.421424 CCAAGCAGGAAAAAGATCTCCG 59.579 50.000 0.00 0.00 41.22 4.63
287 299 2.409948 AGCAGGAAAAAGATCTCCGG 57.590 50.000 0.00 0.00 36.78 5.14
338 350 3.288092 TCATCGCCTGCTTCTCTAGTTA 58.712 45.455 0.00 0.00 0.00 2.24
339 351 3.316588 TCATCGCCTGCTTCTCTAGTTAG 59.683 47.826 0.00 0.00 0.00 2.34
345 357 3.634910 CCTGCTTCTCTAGTTAGTCTCCC 59.365 52.174 0.00 0.00 0.00 4.30
362 374 2.903855 CGATCCCATGTGGCAGCC 60.904 66.667 3.66 3.66 0.00 4.85
366 378 0.990282 ATCCCATGTGGCAGCCTACT 60.990 55.000 14.15 0.00 0.00 2.57
391 403 4.374702 CACAGAGGCACGCAACGC 62.375 66.667 0.00 0.00 0.00 4.84
419 2256 7.448420 ACTCTGTATGTAGCATCTGCAAATAT 58.552 34.615 4.79 0.00 45.16 1.28
424 2261 9.208022 TGTATGTAGCATCTGCAAATATAGAAC 57.792 33.333 4.79 0.00 45.16 3.01
475 2647 1.004745 TGGCTGAATGGAGGAAAGACC 59.995 52.381 0.00 0.00 39.35 3.85
476 2648 1.683319 GGCTGAATGGAGGAAAGACCC 60.683 57.143 0.00 0.00 40.05 4.46
480 2661 0.035056 AATGGAGGAAAGACCCGCAG 60.035 55.000 0.00 0.00 40.05 5.18
488 2669 0.606401 AAAGACCCGCAGACACATGG 60.606 55.000 0.00 0.00 0.00 3.66
490 2671 3.899981 GACCCGCAGACACATGGCA 62.900 63.158 0.00 0.00 0.00 4.92
497 2678 1.066605 GCAGACACATGGCATGGAATC 59.933 52.381 29.49 21.92 33.60 2.52
506 2687 4.244066 CATGGCATGGAATCAACGAAAAA 58.756 39.130 19.80 0.00 0.00 1.94
593 2820 2.871096 TGAATACAGGGGGTTGTGTC 57.129 50.000 0.00 0.00 32.56 3.67
594 2821 1.002659 TGAATACAGGGGGTTGTGTCG 59.997 52.381 0.00 0.00 32.56 4.35
595 2822 1.276989 GAATACAGGGGGTTGTGTCGA 59.723 52.381 0.00 0.00 32.56 4.20
596 2823 1.580059 ATACAGGGGGTTGTGTCGAT 58.420 50.000 0.00 0.00 32.56 3.59
597 2824 1.354101 TACAGGGGGTTGTGTCGATT 58.646 50.000 0.00 0.00 32.56 3.34
598 2825 0.036306 ACAGGGGGTTGTGTCGATTC 59.964 55.000 0.00 0.00 0.00 2.52
599 2826 0.324943 CAGGGGGTTGTGTCGATTCT 59.675 55.000 0.00 0.00 0.00 2.40
602 2829 2.844348 AGGGGGTTGTGTCGATTCTAAT 59.156 45.455 0.00 0.00 0.00 1.73
603 2830 4.035112 AGGGGGTTGTGTCGATTCTAATA 58.965 43.478 0.00 0.00 0.00 0.98
613 2840 8.786826 TGTGTCGATTCTAATAATCCAACTTT 57.213 30.769 0.00 0.00 0.00 2.66
614 2841 8.664798 TGTGTCGATTCTAATAATCCAACTTTG 58.335 33.333 0.00 0.00 0.00 2.77
638 2865 8.877864 TGAGTTGTCAATAATCTAAAATGGGT 57.122 30.769 0.00 0.00 0.00 4.51
639 2866 9.967451 TGAGTTGTCAATAATCTAAAATGGGTA 57.033 29.630 0.00 0.00 0.00 3.69
664 2893 5.063817 ACACCGTAACAGTGAGTTGTTTTAC 59.936 40.000 0.00 0.00 41.50 2.01
665 2894 5.292589 CACCGTAACAGTGAGTTGTTTTACT 59.707 40.000 0.00 0.00 41.50 2.24
666 2895 5.521372 ACCGTAACAGTGAGTTGTTTTACTC 59.479 40.000 0.00 0.00 43.86 2.59
667 2896 5.332055 CCGTAACAGTGAGTTGTTTTACTCG 60.332 44.000 0.00 0.00 46.00 4.18
668 2897 5.332055 CGTAACAGTGAGTTGTTTTACTCGG 60.332 44.000 0.00 0.00 46.00 4.63
669 2898 4.133013 ACAGTGAGTTGTTTTACTCGGT 57.867 40.909 0.00 0.00 46.00 4.69
670 2899 5.266733 ACAGTGAGTTGTTTTACTCGGTA 57.733 39.130 0.00 0.00 46.00 4.02
671 2900 5.287226 ACAGTGAGTTGTTTTACTCGGTAG 58.713 41.667 0.00 0.00 46.00 3.18
672 2901 4.150098 CAGTGAGTTGTTTTACTCGGTAGC 59.850 45.833 0.00 0.00 46.00 3.58
677 2906 6.985645 TGAGTTGTTTTACTCGGTAGCTTTTA 59.014 34.615 0.00 0.00 46.00 1.52
678 2907 7.170320 TGAGTTGTTTTACTCGGTAGCTTTTAG 59.830 37.037 0.00 0.00 46.00 1.85
684 2913 9.626045 GTTTTACTCGGTAGCTTTTAGTACTAA 57.374 33.333 11.38 11.38 0.00 2.24
689 2918 9.183368 ACTCGGTAGCTTTTAGTACTAATAACT 57.817 33.333 15.92 13.60 0.00 2.24
702 2931 8.543862 AGTACTAATAACTACCTTTGCACAAC 57.456 34.615 0.00 0.00 0.00 3.32
706 2935 2.914695 ACTACCTTTGCACAACGGTA 57.085 45.000 15.52 15.52 42.15 4.02
707 2936 3.412237 ACTACCTTTGCACAACGGTAT 57.588 42.857 16.40 7.03 42.10 2.73
708 2937 4.540359 ACTACCTTTGCACAACGGTATA 57.460 40.909 16.40 1.37 42.10 1.47
710 2939 5.307204 ACTACCTTTGCACAACGGTATAAA 58.693 37.500 16.40 0.44 42.10 1.40
714 2946 5.068067 ACCTTTGCACAACGGTATAAACTTT 59.932 36.000 9.60 0.00 40.60 2.66
761 3281 1.228184 GGCAGGCCAGGATGATCAG 60.228 63.158 5.01 0.00 39.69 2.90
794 3314 1.750193 TCCAAATGGAATCCAGCGAC 58.250 50.000 8.40 0.00 42.18 5.19
817 3337 2.272918 CTGCGGTTCGTCCTCCTCTC 62.273 65.000 0.00 0.00 0.00 3.20
818 3338 2.792599 CGGTTCGTCCTCCTCTCG 59.207 66.667 0.00 0.00 0.00 4.04
820 3340 1.678300 GGTTCGTCCTCCTCTCGGT 60.678 63.158 0.00 0.00 0.00 4.69
822 3342 1.744368 TTCGTCCTCCTCTCGGTCG 60.744 63.158 0.00 0.00 35.01 4.79
877 3397 1.261480 TCACAGCTTCACTCCCTCTC 58.739 55.000 0.00 0.00 0.00 3.20
882 3402 1.394151 CTTCACTCCCTCTCCCCCT 59.606 63.158 0.00 0.00 0.00 4.79
884 3404 0.252742 TTCACTCCCTCTCCCCCTTC 60.253 60.000 0.00 0.00 0.00 3.46
886 3406 2.184631 ACTCCCTCTCCCCCTTCCA 61.185 63.158 0.00 0.00 0.00 3.53
912 3446 2.231478 CGAGAGTTCTAGAAGCCAACCA 59.769 50.000 5.12 0.00 0.00 3.67
979 3537 3.878519 GCGGTAGCGAGCTCGACT 61.879 66.667 38.74 32.13 43.02 4.18
980 3538 2.325166 CGGTAGCGAGCTCGACTC 59.675 66.667 38.74 24.42 43.02 3.36
1121 3679 3.121030 CAGGAAACAGAGGGCGCG 61.121 66.667 0.00 0.00 0.00 6.86
1124 3682 4.090057 GAAACAGAGGGCGCGCAC 62.090 66.667 34.42 32.15 0.00 5.34
1486 4056 2.106332 CCGGCTCATGGTACGTCC 59.894 66.667 0.00 0.00 0.00 4.79
1498 4068 0.453449 GTACGTCCGTCCAACTCGAC 60.453 60.000 0.00 0.00 0.00 4.20
1501 4071 1.848932 CGTCCGTCCAACTCGACTCA 61.849 60.000 0.00 0.00 0.00 3.41
1507 4077 2.663602 CGTCCAACTCGACTCAAATCAG 59.336 50.000 0.00 0.00 0.00 2.90
1531 4103 0.457443 GCCTTGCCTGCTTATCAACC 59.543 55.000 0.00 0.00 0.00 3.77
1550 4122 1.153588 GCTGCTCACCTGCTCTCTC 60.154 63.158 0.00 0.00 35.71 3.20
1551 4123 1.516892 CTGCTCACCTGCTCTCTCC 59.483 63.158 0.00 0.00 0.00 3.71
1552 4124 1.958902 CTGCTCACCTGCTCTCTCCC 61.959 65.000 0.00 0.00 0.00 4.30
1553 4125 1.685421 GCTCACCTGCTCTCTCCCT 60.685 63.158 0.00 0.00 0.00 4.20
1579 4151 1.210545 CGCTTGCTTGTTGTGCCTTG 61.211 55.000 0.00 0.00 0.00 3.61
1582 4154 2.029518 GCTTGTTGTGCCTTGGCC 59.970 61.111 9.35 0.00 0.00 5.36
1587 4159 3.910490 TTGTGCCTTGGCCGTTGC 61.910 61.111 9.35 0.00 0.00 4.17
1598 4170 3.490759 CCGTTGCGGCACTGCTAG 61.491 66.667 0.05 0.00 41.17 3.42
1599 4171 2.738521 CGTTGCGGCACTGCTAGT 60.739 61.111 0.05 0.00 35.36 2.57
1600 4172 1.445410 CGTTGCGGCACTGCTAGTA 60.445 57.895 0.05 0.00 35.36 1.82
1629 4592 1.082366 AACGTGCGCAAACCGATTC 60.082 52.632 23.36 3.12 40.02 2.52
1643 4606 0.877649 CGATTCCACTGCTGATCCCG 60.878 60.000 0.00 0.00 0.00 5.14
1649 4612 3.842923 CTGCTGATCCCGCGACCT 61.843 66.667 8.23 0.00 0.00 3.85
1710 4692 1.596408 GGCCGGGCAACAATGAAAT 59.404 52.632 25.33 0.00 39.74 2.17
1711 4693 0.740516 GGCCGGGCAACAATGAAATG 60.741 55.000 25.33 0.00 39.74 2.32
1712 4694 0.246086 GCCGGGCAACAATGAAATGA 59.754 50.000 15.62 0.00 39.74 2.57
1713 4695 1.337635 GCCGGGCAACAATGAAATGAA 60.338 47.619 15.62 0.00 39.74 2.57
1714 4696 2.869636 GCCGGGCAACAATGAAATGAAA 60.870 45.455 15.62 0.00 39.74 2.69
1787 4777 3.423154 CAAACGCACCGAGGAGGC 61.423 66.667 0.00 0.00 46.52 4.70
1793 4783 4.394712 CACCGAGGAGGCCACCAC 62.395 72.222 22.29 14.43 46.52 4.16
1839 4835 4.636435 CACCACCACGGGACACCC 62.636 72.222 0.00 0.00 40.22 4.61
1935 4931 3.199891 GGTGTCGGCCCGCATAAC 61.200 66.667 0.00 0.00 0.00 1.89
1953 4949 6.020984 GCATAACAAAATGGGAAAAATTCGC 58.979 36.000 0.68 0.68 42.39 4.70
1959 4955 4.568152 AATGGGAAAAATTCGCTATCCG 57.432 40.909 8.35 0.00 42.51 4.18
1960 4956 2.294074 TGGGAAAAATTCGCTATCCGG 58.706 47.619 0.00 0.00 42.51 5.14
1961 4957 1.607148 GGGAAAAATTCGCTATCCGGG 59.393 52.381 0.00 0.00 39.31 5.73
1962 4958 1.001706 GGAAAAATTCGCTATCCGGGC 60.002 52.381 0.00 0.00 37.59 6.13
1963 4959 1.673920 GAAAAATTCGCTATCCGGGCA 59.326 47.619 0.00 0.00 37.59 5.36
1964 4960 1.021968 AAAATTCGCTATCCGGGCAC 58.978 50.000 0.00 0.00 37.59 5.01
1965 4961 1.157870 AAATTCGCTATCCGGGCACG 61.158 55.000 0.00 0.00 37.59 5.34
2068 5064 1.143813 GTCTCATCCCCATCCCATGT 58.856 55.000 0.00 0.00 0.00 3.21
2076 5072 0.105593 CCCATCCCATGTGTCTCTCG 59.894 60.000 0.00 0.00 0.00 4.04
2079 5075 0.689080 ATCCCATGTGTCTCTCGCCT 60.689 55.000 0.00 0.00 0.00 5.52
2081 5077 0.387202 CCCATGTGTCTCTCGCCTAG 59.613 60.000 0.00 0.00 0.00 3.02
2082 5078 1.107114 CCATGTGTCTCTCGCCTAGT 58.893 55.000 0.00 0.00 0.00 2.57
2083 5079 2.298610 CCATGTGTCTCTCGCCTAGTA 58.701 52.381 0.00 0.00 0.00 1.82
2085 5081 1.380524 TGTGTCTCTCGCCTAGTAGC 58.619 55.000 0.00 0.00 0.00 3.58
2086 5082 1.065345 TGTGTCTCTCGCCTAGTAGCT 60.065 52.381 0.00 0.00 0.00 3.32
2087 5083 1.332375 GTGTCTCTCGCCTAGTAGCTG 59.668 57.143 0.00 0.00 0.00 4.24
2088 5084 0.309612 GTCTCTCGCCTAGTAGCTGC 59.690 60.000 0.00 0.00 0.00 5.25
2090 5086 1.801309 CTCTCGCCTAGTAGCTGCCC 61.801 65.000 0.00 0.00 0.00 5.36
2092 5088 3.154473 CGCCTAGTAGCTGCCCCA 61.154 66.667 0.00 0.00 0.00 4.96
2093 5089 2.511452 CGCCTAGTAGCTGCCCCAT 61.511 63.158 0.00 0.00 0.00 4.00
2094 5090 1.373059 GCCTAGTAGCTGCCCCATC 59.627 63.158 0.00 0.00 0.00 3.51
2095 5091 2.062070 CCTAGTAGCTGCCCCATCC 58.938 63.158 0.00 0.00 0.00 3.51
2096 5092 1.484444 CCTAGTAGCTGCCCCATCCC 61.484 65.000 0.00 0.00 0.00 3.85
2097 5093 0.764369 CTAGTAGCTGCCCCATCCCA 60.764 60.000 0.00 0.00 0.00 4.37
2098 5094 0.104462 TAGTAGCTGCCCCATCCCAT 60.104 55.000 0.00 0.00 0.00 4.00
2099 5095 1.228367 GTAGCTGCCCCATCCCATG 60.228 63.158 0.00 0.00 0.00 3.66
2100 5096 1.697394 TAGCTGCCCCATCCCATGT 60.697 57.895 0.00 0.00 0.00 3.21
2101 5097 1.998444 TAGCTGCCCCATCCCATGTG 61.998 60.000 0.00 0.00 0.00 3.21
2102 5098 2.685366 CTGCCCCATCCCATGTGT 59.315 61.111 0.00 0.00 0.00 3.72
2103 5099 1.454479 CTGCCCCATCCCATGTGTC 60.454 63.158 0.00 0.00 0.00 3.67
2104 5100 1.929860 CTGCCCCATCCCATGTGTCT 61.930 60.000 0.00 0.00 0.00 3.41
2105 5101 1.152881 GCCCCATCCCATGTGTCTC 60.153 63.158 0.00 0.00 0.00 3.36
2106 5102 1.639635 GCCCCATCCCATGTGTCTCT 61.640 60.000 0.00 0.00 0.00 3.10
2107 5103 0.471617 CCCCATCCCATGTGTCTCTC 59.528 60.000 0.00 0.00 0.00 3.20
2191 5233 1.349026 CCTTCTCCTTCTGTGAAGCCA 59.651 52.381 2.08 0.00 41.25 4.75
2193 5235 0.322975 TCTCCTTCTGTGAAGCCAGC 59.677 55.000 2.08 0.00 32.32 4.85
2194 5236 0.676151 CTCCTTCTGTGAAGCCAGCC 60.676 60.000 2.08 0.00 32.32 4.85
2198 5240 0.250467 TTCTGTGAAGCCAGCCTGAC 60.250 55.000 0.00 0.00 32.32 3.51
2199 5241 1.123861 TCTGTGAAGCCAGCCTGACT 61.124 55.000 0.00 0.00 32.32 3.41
2200 5242 0.954449 CTGTGAAGCCAGCCTGACTG 60.954 60.000 0.00 0.00 46.77 3.51
2260 5303 9.319143 CACTGAGACTTTTTAGAGAAAGAAGAA 57.681 33.333 4.54 0.00 38.60 2.52
2273 5316 5.616270 AGAAAGAAGAAGGAAGAGTCAACC 58.384 41.667 0.00 0.00 0.00 3.77
2317 5362 3.258971 ACTCTGCTTATCACAAGCTCC 57.741 47.619 10.09 0.00 43.38 4.70
2318 5363 2.568956 ACTCTGCTTATCACAAGCTCCA 59.431 45.455 10.09 0.00 43.38 3.86
2319 5364 2.935201 CTCTGCTTATCACAAGCTCCAC 59.065 50.000 10.09 0.00 43.38 4.02
2549 5615 4.781959 CAATGCACGCGCCCAAGG 62.782 66.667 5.73 0.00 37.32 3.61
2847 5913 2.223433 CCTGGTCGGTACTAATCACGTC 60.223 54.545 0.00 0.00 0.00 4.34
2848 5914 1.745087 TGGTCGGTACTAATCACGTCC 59.255 52.381 0.00 0.00 35.61 4.79
2849 5915 1.066152 GGTCGGTACTAATCACGTCCC 59.934 57.143 0.00 0.00 0.00 4.46
2850 5916 1.016627 TCGGTACTAATCACGTCCCG 58.983 55.000 0.00 0.00 35.50 5.14
2851 5917 0.593263 CGGTACTAATCACGTCCCGC 60.593 60.000 0.00 0.00 27.33 6.13
2852 5918 0.743097 GGTACTAATCACGTCCCGCT 59.257 55.000 0.00 0.00 0.00 5.52
2867 5933 2.375766 CGCTTCCACTCACACGAGC 61.376 63.158 0.00 0.00 43.66 5.03
2891 5957 1.563111 CACTGCTTGGTTGCTTGTTG 58.437 50.000 0.00 0.00 0.00 3.33
2892 5958 0.461135 ACTGCTTGGTTGCTTGTTGG 59.539 50.000 0.00 0.00 0.00 3.77
2893 5959 0.249573 CTGCTTGGTTGCTTGTTGGG 60.250 55.000 0.00 0.00 0.00 4.12
2894 5960 0.685785 TGCTTGGTTGCTTGTTGGGA 60.686 50.000 0.00 0.00 0.00 4.37
2895 5961 0.681175 GCTTGGTTGCTTGTTGGGAT 59.319 50.000 0.00 0.00 0.00 3.85
2896 5962 1.337167 GCTTGGTTGCTTGTTGGGATC 60.337 52.381 0.00 0.00 0.00 3.36
2897 5963 1.962807 CTTGGTTGCTTGTTGGGATCA 59.037 47.619 0.00 0.00 0.00 2.92
2898 5964 2.307496 TGGTTGCTTGTTGGGATCAT 57.693 45.000 0.00 0.00 0.00 2.45
2899 5965 1.894466 TGGTTGCTTGTTGGGATCATG 59.106 47.619 0.00 0.00 0.00 3.07
2900 5966 2.170166 GGTTGCTTGTTGGGATCATGA 58.830 47.619 0.00 0.00 0.00 3.07
2984 6050 2.699954 TCTTGTGCAAGCTAGCCTAAC 58.300 47.619 12.13 5.81 38.28 2.34
3002 6068 2.225068 ACAAGACTCTGTTCACGTGG 57.775 50.000 17.00 0.08 0.00 4.94
3079 6145 3.462982 TGCTTTAGTACGCCATACCATG 58.537 45.455 0.00 0.00 33.85 3.66
3163 6232 3.091417 GCAACACGAGCGAATGAATAAC 58.909 45.455 0.00 0.00 0.00 1.89
3283 6354 5.494724 TGCTAGTTGATCAGCTTCAAGATT 58.505 37.500 17.76 0.00 36.34 2.40
3292 6363 6.657966 TGATCAGCTTCAAGATTCATTTGACT 59.342 34.615 0.00 0.00 34.50 3.41
3411 6482 2.042831 GCAGATTCTTGCCCGTGCT 61.043 57.895 0.00 0.00 38.13 4.40
3486 6557 3.940209 GGCAACAAGGTGAATCATCAA 57.060 42.857 0.00 0.00 37.30 2.57
3506 6577 4.036734 TCAATTCAGTTGTCTTTGAGTGGC 59.963 41.667 0.00 0.00 38.95 5.01
3513 6584 1.003580 TGTCTTTGAGTGGCCATCTCC 59.996 52.381 23.92 13.53 0.00 3.71
3526 6597 1.238439 CATCTCCGTGCAAAACTGGT 58.762 50.000 0.00 0.00 0.00 4.00
3529 6600 1.134220 TCTCCGTGCAAAACTGGTTCT 60.134 47.619 0.00 0.00 0.00 3.01
3535 6606 3.489059 CGTGCAAAACTGGTTCTCAATGT 60.489 43.478 0.00 0.00 0.00 2.71
3539 6610 6.701400 GTGCAAAACTGGTTCTCAATGTTATT 59.299 34.615 0.00 0.00 0.00 1.40
3549 6620 8.141268 TGGTTCTCAATGTTATTGAAAAAGTCC 58.859 33.333 5.82 0.00 0.00 3.85
3559 6630 9.442047 TGTTATTGAAAAAGTCCAATGTTTGTT 57.558 25.926 0.00 0.00 35.02 2.83
3562 6633 7.736447 TTGAAAAAGTCCAATGTTTGTTTGT 57.264 28.000 0.00 0.00 0.00 2.83
3579 6650 6.489127 TGTTTGTAACATTCACCGGATAAG 57.511 37.500 9.46 0.00 36.25 1.73
3587 6658 0.981183 TCACCGGATAAGTGCAGGTT 59.019 50.000 9.46 0.00 35.14 3.50
3608 6679 1.021390 CCGCGATATTGGAGGATGGC 61.021 60.000 8.23 0.00 0.00 4.40
3666 6737 3.636300 TGGCATATGGTCAAAGGTAATGC 59.364 43.478 4.56 0.00 0.00 3.56
3688 6759 4.201714 GCAGTCAGTTGCCTTTTCAAAAAC 60.202 41.667 0.00 0.00 38.13 2.43
3699 6770 5.817296 GCCTTTTCAAAAACAGGATCAAAGT 59.183 36.000 0.00 0.00 34.75 2.66
3706 6777 6.154363 TCAAAAACAGGATCAAAGTTGACCTT 59.846 34.615 10.59 0.00 40.49 3.50
3709 6780 7.839680 AAACAGGATCAAAGTTGACCTTAAT 57.160 32.000 10.59 1.50 40.49 1.40
3711 6782 8.567285 AACAGGATCAAAGTTGACCTTAATAG 57.433 34.615 10.59 4.91 40.49 1.73
3867 6938 4.404394 TGATATTGACACAGTCGGGTATGT 59.596 41.667 0.00 0.00 34.95 2.29
3879 6950 1.269988 CGGGTATGTGGCTCAGATCTG 60.270 57.143 17.07 17.07 0.00 2.90
3905 6976 6.373774 AGAAATAAGTGCTGTCATTTCCTCTG 59.626 38.462 9.36 0.00 37.87 3.35
3925 6996 5.368145 TCTGATTGGAAATACTAATGCGCT 58.632 37.500 9.73 0.00 30.00 5.92
3929 7000 3.211045 TGGAAATACTAATGCGCTTCCC 58.789 45.455 9.73 0.00 32.94 3.97
3986 7058 5.995282 TGGTCACAAACAATATTTCGTCTCT 59.005 36.000 0.00 0.00 0.00 3.10
3992 7064 8.446273 CACAAACAATATTTCGTCTCTTCAGAT 58.554 33.333 0.00 0.00 0.00 2.90
4070 7142 2.167281 CGATCCTGAGAATGGTGAGTGT 59.833 50.000 0.00 0.00 0.00 3.55
4106 7178 8.909923 AGGTTTTGCACTAAGTTAGTTAAATGT 58.090 29.630 13.00 3.87 36.76 2.71
4132 7213 5.955355 ACCTTCCTCTATAGTCTATGATGCC 59.045 44.000 2.37 0.00 0.00 4.40
4137 7218 7.184862 TCCTCTATAGTCTATGATGCCAATGA 58.815 38.462 2.37 0.00 0.00 2.57
4142 7223 3.072184 AGTCTATGATGCCAATGAGGGAC 59.928 47.826 0.00 0.00 42.31 4.46
4148 7229 5.169992 TGATGCCAATGAGGGACATATAG 57.830 43.478 0.00 0.00 42.31 1.31
4182 7263 2.292569 GCCTATGTGCTTGTCATCCATG 59.707 50.000 0.00 0.00 0.00 3.66
4219 7300 6.528072 GCTGTATATTGACAGGCAAAAAGAAC 59.472 38.462 7.57 0.00 45.85 3.01
4417 7498 0.106519 AGGGTGGTTGCATGGCTATC 60.107 55.000 0.00 0.00 0.00 2.08
4443 7524 5.932303 AGGTACATAATTACTTAGCCATGCG 59.068 40.000 0.00 0.00 0.00 4.73
4460 7541 5.065602 GCCATGCGTATGATATCATTGTCAT 59.934 40.000 22.84 18.02 37.45 3.06
4477 7558 8.909923 TCATTGTCATTATCAGAAATTCAGCAT 58.090 29.630 0.00 0.00 0.00 3.79
4492 7573 2.092429 TCAGCATGGTGGATAGGTTTCC 60.092 50.000 23.85 0.00 36.16 3.13
4513 7594 2.744202 CTGCCTTGGTGTTGTGAGATAC 59.256 50.000 0.00 0.00 0.00 2.24
4594 7676 7.520614 GCTGCTCTAAAATAACTTGTCACTTGT 60.521 37.037 0.00 0.00 0.00 3.16
5016 8098 7.931948 ACTACACAGCTTTGTACTTCTAAACAT 59.068 33.333 8.66 0.00 0.00 2.71
5088 8171 2.159296 GCCACCCGTGATTTTATTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
5346 8429 7.506328 TCGAGCTCATAAGTAAATAGTGCTA 57.494 36.000 15.40 0.00 0.00 3.49
5453 8536 6.043243 ACTTCCCAATTGTCTCTTCTTACTCA 59.957 38.462 4.43 0.00 0.00 3.41
5721 8804 3.010420 GGTGGAGAGTAAGTTCATTGCC 58.990 50.000 0.00 0.00 0.00 4.52
6063 10060 6.127730 CCCCTTGCCACAAGTAAGTTATTAAG 60.128 42.308 6.58 0.00 36.52 1.85
6115 10112 5.226396 CCGTTTAATCCTCAAAATTGCACA 58.774 37.500 0.00 0.00 0.00 4.57
6147 10144 6.640499 TGCATTTTCCTTTGTCGATAAACTTG 59.360 34.615 2.90 0.00 0.00 3.16
6242 10239 4.770795 AGGGTTTCTATTTGACCGATCTG 58.229 43.478 0.00 0.00 34.22 2.90
6254 10251 1.880340 CGATCTGGGAAGCGAGCAC 60.880 63.158 0.00 0.00 0.00 4.40
6347 10344 6.548441 TTACAATGTTAACCCGTTCTCTTG 57.452 37.500 2.48 0.00 0.00 3.02
6421 10418 1.235724 CAGTTCGTTTCCACCCTTCC 58.764 55.000 0.00 0.00 0.00 3.46
6479 10476 6.274200 AGCCATATCCTGTTCTCCATATCTTT 59.726 38.462 0.00 0.00 0.00 2.52
6481 10478 7.528543 GCCATATCCTGTTCTCCATATCTTTCT 60.529 40.741 0.00 0.00 0.00 2.52
6482 10479 8.381636 CCATATCCTGTTCTCCATATCTTTCTT 58.618 37.037 0.00 0.00 0.00 2.52
6533 10530 3.000623 CAGTCAATCATGATTCGTCGTGG 59.999 47.826 18.16 5.72 38.01 4.94
6677 10674 1.067295 AGCATGAGTGGGGACTTCAA 58.933 50.000 0.00 0.00 0.00 2.69
6778 10781 5.886960 AACTTTTGCACTCATCCAGATAC 57.113 39.130 0.00 0.00 0.00 2.24
6796 10800 4.952335 AGATACCCAAAGCAGGATTTTGAG 59.048 41.667 0.00 0.00 37.65 3.02
6860 10864 3.200958 ACTGAGGGTGTACAATAGGGT 57.799 47.619 0.00 0.00 0.00 4.34
6861 10865 4.341863 ACTGAGGGTGTACAATAGGGTA 57.658 45.455 0.00 0.00 0.00 3.69
6862 10866 4.287552 ACTGAGGGTGTACAATAGGGTAG 58.712 47.826 0.00 0.00 0.00 3.18
6864 10868 2.367894 GAGGGTGTACAATAGGGTAGGC 59.632 54.545 0.00 0.00 0.00 3.93
6865 10869 2.121129 GGGTGTACAATAGGGTAGGCA 58.879 52.381 0.00 0.00 0.00 4.75
6867 10871 3.137728 GGGTGTACAATAGGGTAGGCAAT 59.862 47.826 0.00 0.00 0.00 3.56
6898 10902 4.285003 TGTTGCCACTGTAATACTGTACCT 59.715 41.667 2.65 0.00 0.00 3.08
6941 10945 5.808540 GCCTATTAACACGTGTTCATACTGA 59.191 40.000 35.40 15.15 39.31 3.41
7012 11026 1.135315 CATGACGCAATGGACCAAAGG 60.135 52.381 0.00 0.00 0.00 3.11
7014 11028 1.243902 GACGCAATGGACCAAAGGAA 58.756 50.000 0.00 0.00 0.00 3.36
7015 11029 1.611491 GACGCAATGGACCAAAGGAAA 59.389 47.619 0.00 0.00 0.00 3.13
7092 11112 1.738350 TCTTCGTGGTAAGAGCGAGAG 59.262 52.381 0.00 0.00 36.00 3.20
7100 11120 3.281158 GGTAAGAGCGAGAGTTAGGACT 58.719 50.000 0.00 0.00 39.32 3.85
7101 11121 3.695556 GGTAAGAGCGAGAGTTAGGACTT 59.304 47.826 0.00 0.00 35.88 3.01
7129 11313 7.086685 ACCCAGGAATCAACTTAGTAGAAAA 57.913 36.000 0.00 0.00 0.00 2.29
7168 11748 2.158957 TGAACCTTAGGATCATGACGGC 60.159 50.000 7.15 0.00 29.57 5.68
7267 11847 4.685026 CTCGATCGTAGCCCCGCG 62.685 72.222 15.94 0.00 0.00 6.46
7301 11881 0.107017 AGCCGTTGGATCATCCTTGG 60.107 55.000 4.96 5.19 37.46 3.61
7306 11886 0.107214 TTGGATCATCCTTGGTCGGC 60.107 55.000 4.96 0.00 37.46 5.54
7314 11894 2.671070 CTTGGTCGGCCCAGATGT 59.329 61.111 2.12 0.00 46.31 3.06
7319 11899 2.758327 TCGGCCCAGATGTACGCT 60.758 61.111 0.00 0.00 0.00 5.07
7327 11907 1.022735 CAGATGTACGCTCGGTAGGT 58.977 55.000 0.00 0.00 0.00 3.08
7384 11964 0.537188 CCTCGTAAGCCATGTCACCT 59.463 55.000 0.00 0.00 37.18 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 3.197434 ACGAAAATAGCGCCTTGTTTC 57.803 42.857 2.29 8.51 0.00 2.78
90 92 2.454055 ACTACGTACGAAAATAGCGCC 58.546 47.619 24.41 0.00 0.00 6.53
132 144 0.387367 TCTGTTTCAGAGAGCGACGC 60.387 55.000 13.03 13.03 35.39 5.19
133 145 1.332178 GTCTGTTTCAGAGAGCGACG 58.668 55.000 0.00 0.00 41.46 5.12
147 159 4.681978 GAAGTGCCGGGCGTCTGT 62.682 66.667 15.40 6.50 0.00 3.41
152 164 4.697756 TTGAGGAAGTGCCGGGCG 62.698 66.667 15.40 0.00 43.43 6.13
153 165 1.460273 TTTTTGAGGAAGTGCCGGGC 61.460 55.000 13.32 13.32 43.43 6.13
154 166 1.256812 ATTTTTGAGGAAGTGCCGGG 58.743 50.000 2.18 0.00 43.43 5.73
155 167 4.718940 ATTATTTTTGAGGAAGTGCCGG 57.281 40.909 0.00 0.00 43.43 6.13
156 168 9.796120 TTTATTATTATTTTTGAGGAAGTGCCG 57.204 29.630 0.00 0.00 43.43 5.69
171 183 9.744468 GGGCGTCTGTTTCATTTTATTATTATT 57.256 29.630 0.00 0.00 0.00 1.40
172 184 8.073768 CGGGCGTCTGTTTCATTTTATTATTAT 58.926 33.333 0.00 0.00 0.00 1.28
173 185 7.411274 CGGGCGTCTGTTTCATTTTATTATTA 58.589 34.615 0.00 0.00 0.00 0.98
174 186 6.262601 CGGGCGTCTGTTTCATTTTATTATT 58.737 36.000 0.00 0.00 0.00 1.40
175 187 5.220970 CCGGGCGTCTGTTTCATTTTATTAT 60.221 40.000 0.00 0.00 0.00 1.28
176 188 4.095185 CCGGGCGTCTGTTTCATTTTATTA 59.905 41.667 0.00 0.00 0.00 0.98
177 189 3.119637 CCGGGCGTCTGTTTCATTTTATT 60.120 43.478 0.00 0.00 0.00 1.40
178 190 2.422127 CCGGGCGTCTGTTTCATTTTAT 59.578 45.455 0.00 0.00 0.00 1.40
179 191 1.807742 CCGGGCGTCTGTTTCATTTTA 59.192 47.619 0.00 0.00 0.00 1.52
180 192 0.596082 CCGGGCGTCTGTTTCATTTT 59.404 50.000 0.00 0.00 0.00 1.82
181 193 1.862602 GCCGGGCGTCTGTTTCATTT 61.863 55.000 1.81 0.00 0.00 2.32
182 194 2.332654 GCCGGGCGTCTGTTTCATT 61.333 57.895 1.81 0.00 0.00 2.57
183 195 2.746277 GCCGGGCGTCTGTTTCAT 60.746 61.111 1.81 0.00 0.00 2.57
184 196 4.243008 TGCCGGGCGTCTGTTTCA 62.243 61.111 15.40 0.00 0.00 2.69
185 197 3.723348 GTGCCGGGCGTCTGTTTC 61.723 66.667 15.40 0.00 0.00 2.78
186 198 3.767630 AAGTGCCGGGCGTCTGTTT 62.768 57.895 15.40 0.00 0.00 2.83
187 199 4.250305 AAGTGCCGGGCGTCTGTT 62.250 61.111 15.40 0.00 0.00 3.16
188 200 4.681978 GAAGTGCCGGGCGTCTGT 62.682 66.667 15.40 6.50 0.00 3.41
193 205 4.697756 TTGAGGAAGTGCCGGGCG 62.698 66.667 15.40 0.00 43.43 6.13
194 206 1.460273 TTTTTGAGGAAGTGCCGGGC 61.460 55.000 13.32 13.32 43.43 6.13
195 207 2.727103 TTTTTGAGGAAGTGCCGGG 58.273 52.632 2.18 0.00 43.43 5.73
212 224 8.931775 GGGCGTCTGTTTCATTTTATTATTTTT 58.068 29.630 0.00 0.00 0.00 1.94
213 225 7.274686 CGGGCGTCTGTTTCATTTTATTATTTT 59.725 33.333 0.00 0.00 0.00 1.82
214 226 6.750039 CGGGCGTCTGTTTCATTTTATTATTT 59.250 34.615 0.00 0.00 0.00 1.40
215 227 6.262601 CGGGCGTCTGTTTCATTTTATTATT 58.737 36.000 0.00 0.00 0.00 1.40
216 228 5.220970 CCGGGCGTCTGTTTCATTTTATTAT 60.221 40.000 0.00 0.00 0.00 1.28
217 229 4.095185 CCGGGCGTCTGTTTCATTTTATTA 59.905 41.667 0.00 0.00 0.00 0.98
218 230 3.119637 CCGGGCGTCTGTTTCATTTTATT 60.120 43.478 0.00 0.00 0.00 1.40
219 231 2.422127 CCGGGCGTCTGTTTCATTTTAT 59.578 45.455 0.00 0.00 0.00 1.40
220 232 1.807742 CCGGGCGTCTGTTTCATTTTA 59.192 47.619 0.00 0.00 0.00 1.52
221 233 0.596082 CCGGGCGTCTGTTTCATTTT 59.404 50.000 0.00 0.00 0.00 1.82
222 234 1.862602 GCCGGGCGTCTGTTTCATTT 61.863 55.000 1.81 0.00 0.00 2.32
223 235 2.332654 GCCGGGCGTCTGTTTCATT 61.333 57.895 1.81 0.00 0.00 2.57
224 236 2.746277 GCCGGGCGTCTGTTTCAT 60.746 61.111 1.81 0.00 0.00 2.57
225 237 3.758973 TTGCCGGGCGTCTGTTTCA 62.759 57.895 15.40 0.00 0.00 2.69
226 238 2.966309 CTTGCCGGGCGTCTGTTTC 61.966 63.158 15.40 0.00 0.00 2.78
227 239 2.978010 CTTGCCGGGCGTCTGTTT 60.978 61.111 15.40 0.00 0.00 2.83
228 240 3.883744 CTCTTGCCGGGCGTCTGTT 62.884 63.158 15.40 0.00 0.00 3.16
269 281 2.010497 GTCCGGAGATCTTTTTCCTGC 58.990 52.381 3.06 0.00 0.00 4.85
286 298 4.508124 CAGCTTGGTATTTCATACGAGTCC 59.492 45.833 0.00 0.00 36.61 3.85
287 299 4.025647 GCAGCTTGGTATTTCATACGAGTC 60.026 45.833 0.00 0.00 36.61 3.36
338 350 1.050988 CCACATGGGATCGGGAGACT 61.051 60.000 0.00 0.00 44.82 3.24
339 351 1.447643 CCACATGGGATCGGGAGAC 59.552 63.158 0.00 0.00 44.82 3.36
345 357 2.043604 TAGGCTGCCACATGGGATCG 62.044 60.000 22.65 0.00 40.01 3.69
362 374 1.470632 GCCTCTGTGTAGCAGCAGTAG 60.471 57.143 0.00 0.00 44.66 2.57
366 378 1.004560 GTGCCTCTGTGTAGCAGCA 60.005 57.895 0.00 0.00 44.66 4.41
367 379 2.097038 CGTGCCTCTGTGTAGCAGC 61.097 63.158 0.00 0.00 44.66 5.25
368 380 2.097038 GCGTGCCTCTGTGTAGCAG 61.097 63.158 0.00 0.00 46.34 4.24
391 403 4.872124 TGCAGATGCTACATACAGAGTTTG 59.128 41.667 6.35 0.00 42.66 2.93
419 2256 6.732154 CGGTATGGAGTAATCTTTCGTTCTA 58.268 40.000 0.00 0.00 0.00 2.10
424 2261 3.713288 TGCGGTATGGAGTAATCTTTCG 58.287 45.455 0.00 0.00 0.00 3.46
456 2628 1.683319 GGGTCTTTCCTCCATTCAGCC 60.683 57.143 0.00 0.00 36.25 4.85
475 2647 2.767445 CCATGCCATGTGTCTGCGG 61.767 63.158 3.63 0.00 0.00 5.69
476 2648 1.307355 TTCCATGCCATGTGTCTGCG 61.307 55.000 3.63 0.00 0.00 5.18
480 2661 2.478370 CGTTGATTCCATGCCATGTGTC 60.478 50.000 3.63 0.00 0.00 3.67
545 2726 9.788960 CAAGAGTTATACAAGGCCTTATTTTTC 57.211 33.333 20.00 10.18 0.00 2.29
551 2732 5.429681 TGCAAGAGTTATACAAGGCCTTA 57.570 39.130 20.00 3.48 0.00 2.69
553 2734 4.080356 TCATGCAAGAGTTATACAAGGCCT 60.080 41.667 0.00 0.00 0.00 5.19
554 2735 4.199310 TCATGCAAGAGTTATACAAGGCC 58.801 43.478 0.00 0.00 0.00 5.19
555 2736 5.818136 TTCATGCAAGAGTTATACAAGGC 57.182 39.130 0.00 0.00 0.00 4.35
557 2738 8.554528 CCTGTATTCATGCAAGAGTTATACAAG 58.445 37.037 13.16 6.49 29.63 3.16
559 2740 6.992123 CCCTGTATTCATGCAAGAGTTATACA 59.008 38.462 12.11 12.11 0.00 2.29
563 2744 4.385199 CCCCCTGTATTCATGCAAGAGTTA 60.385 45.833 0.00 0.00 0.00 2.24
564 2745 3.624777 CCCCTGTATTCATGCAAGAGTT 58.375 45.455 0.00 0.00 0.00 3.01
613 2840 8.877864 ACCCATTTTAGATTATTGACAACTCA 57.122 30.769 0.00 0.00 0.00 3.41
631 2858 3.816523 CACTGTTACGGTGTTACCCATTT 59.183 43.478 15.57 0.00 36.14 2.32
632 2859 3.071312 TCACTGTTACGGTGTTACCCATT 59.929 43.478 21.81 0.00 41.12 3.16
633 2860 2.633967 TCACTGTTACGGTGTTACCCAT 59.366 45.455 21.81 0.00 41.12 4.00
635 2862 2.036346 ACTCACTGTTACGGTGTTACCC 59.964 50.000 21.81 0.00 41.12 3.69
636 2863 3.375782 ACTCACTGTTACGGTGTTACC 57.624 47.619 21.81 0.00 41.12 2.85
637 2864 4.114794 ACAACTCACTGTTACGGTGTTAC 58.885 43.478 21.81 0.00 41.12 2.50
638 2865 4.389890 ACAACTCACTGTTACGGTGTTA 57.610 40.909 21.81 5.03 41.12 2.41
639 2866 3.255969 ACAACTCACTGTTACGGTGTT 57.744 42.857 21.81 8.96 41.12 3.32
641 2868 4.609691 AAAACAACTCACTGTTACGGTG 57.390 40.909 17.48 17.48 38.59 4.94
643 2870 5.332055 CGAGTAAAACAACTCACTGTTACGG 60.332 44.000 5.00 0.00 45.13 4.02
666 2895 9.670719 GGTAGTTATTAGTACTAAAAGCTACCG 57.329 37.037 30.71 0.00 36.54 4.02
677 2906 7.330208 CGTTGTGCAAAGGTAGTTATTAGTACT 59.670 37.037 0.00 0.00 31.94 2.73
678 2907 7.412237 CCGTTGTGCAAAGGTAGTTATTAGTAC 60.412 40.741 8.41 0.00 35.61 2.73
698 2927 3.253921 GGTGCCAAAGTTTATACCGTTGT 59.746 43.478 0.00 0.00 0.00 3.32
702 2931 2.422127 CAGGGTGCCAAAGTTTATACCG 59.578 50.000 8.25 0.00 0.00 4.02
706 2935 2.957474 ACACAGGGTGCCAAAGTTTAT 58.043 42.857 0.00 0.00 36.98 1.40
707 2936 2.445682 ACACAGGGTGCCAAAGTTTA 57.554 45.000 0.00 0.00 36.98 2.01
708 2937 1.567357 AACACAGGGTGCCAAAGTTT 58.433 45.000 0.00 0.00 36.98 2.66
710 2939 1.687563 GTAACACAGGGTGCCAAAGT 58.312 50.000 0.00 0.00 36.98 2.66
714 2946 2.281208 GCGTAACACAGGGTGCCA 60.281 61.111 0.00 0.00 36.98 4.92
761 3281 0.248289 TTTGGAAGGTCGGATCGGAC 59.752 55.000 21.74 21.74 36.18 4.79
794 3314 4.379243 AGGACGAACCGCAGCCAG 62.379 66.667 0.00 0.00 44.74 4.85
818 3338 3.883744 CTGGTGGTGGTGAGCGACC 62.884 68.421 1.14 1.14 46.37 4.79
820 3340 2.842462 ACTGGTGGTGGTGAGCGA 60.842 61.111 0.00 0.00 0.00 4.93
822 3342 1.302033 CTGACTGGTGGTGGTGAGC 60.302 63.158 0.00 0.00 0.00 4.26
877 3397 4.101448 CTCGGCTGTGGAAGGGGG 62.101 72.222 0.00 0.00 0.00 5.40
882 3402 1.819288 CTAGAACTCTCGGCTGTGGAA 59.181 52.381 0.00 0.00 0.00 3.53
884 3404 1.464734 TCTAGAACTCTCGGCTGTGG 58.535 55.000 0.00 0.00 0.00 4.17
886 3406 1.474879 GCTTCTAGAACTCTCGGCTGT 59.525 52.381 0.00 0.00 0.00 4.40
978 3536 4.271816 CCCGCTGGTCCGATCGAG 62.272 72.222 18.66 6.95 0.00 4.04
1200 3758 4.521062 CGAGGCTTCCCGCTCCTG 62.521 72.222 0.00 0.00 39.13 3.86
1486 4056 2.663602 CTGATTTGAGTCGAGTTGGACG 59.336 50.000 0.00 0.00 41.81 4.79
1498 4068 0.169672 CAAGGCACGGCTGATTTGAG 59.830 55.000 0.00 0.00 0.00 3.02
1501 4071 2.639327 GGCAAGGCACGGCTGATTT 61.639 57.895 0.00 0.00 34.16 2.17
1531 4103 2.508887 GAGAGCAGGTGAGCAGCG 60.509 66.667 0.00 0.00 36.85 5.18
1582 4154 1.011968 TTACTAGCAGTGCCGCAACG 61.012 55.000 12.58 0.00 0.00 4.10
1587 4159 3.123804 CCACTTATTACTAGCAGTGCCG 58.876 50.000 12.58 5.94 36.16 5.69
1594 4166 3.308866 CACGTTGCCCACTTATTACTAGC 59.691 47.826 0.00 0.00 0.00 3.42
1595 4167 3.308866 GCACGTTGCCCACTTATTACTAG 59.691 47.826 0.00 0.00 37.42 2.57
1596 4168 3.264104 GCACGTTGCCCACTTATTACTA 58.736 45.455 0.00 0.00 37.42 1.82
1597 4169 2.081462 GCACGTTGCCCACTTATTACT 58.919 47.619 0.00 0.00 37.42 2.24
1598 4170 1.201987 CGCACGTTGCCCACTTATTAC 60.202 52.381 4.73 0.00 41.12 1.89
1599 4171 1.080298 CGCACGTTGCCCACTTATTA 58.920 50.000 4.73 0.00 41.12 0.98
1600 4172 1.873165 CGCACGTTGCCCACTTATT 59.127 52.632 4.73 0.00 41.12 1.40
1619 4574 1.522668 TCAGCAGTGGAATCGGTTTG 58.477 50.000 0.00 0.00 0.00 2.93
1624 4587 0.877649 CGGGATCAGCAGTGGAATCG 60.878 60.000 0.00 0.00 0.00 3.34
1629 4592 4.147449 TCGCGGGATCAGCAGTGG 62.147 66.667 6.13 0.00 34.19 4.00
1710 4692 3.726517 GCGCGCAGGCTCTTTTCA 61.727 61.111 29.10 0.00 36.88 2.69
1711 4693 4.801221 CGCGCGCAGGCTCTTTTC 62.801 66.667 32.61 0.00 36.88 2.29
1787 4777 1.304381 CCAGGATTGGTGGTGGTGG 60.304 63.158 0.00 0.00 39.79 4.61
1793 4783 0.035056 GTCCAGTCCAGGATTGGTGG 60.035 60.000 26.38 15.14 45.26 4.61
1839 4835 1.441515 CGAGTCGGTGGTGTACGTG 60.442 63.158 4.10 0.00 0.00 4.49
1935 4931 5.231991 CGGATAGCGAATTTTTCCCATTTTG 59.768 40.000 0.00 0.00 0.00 2.44
2068 5064 1.669604 CAGCTACTAGGCGAGAGACA 58.330 55.000 0.28 0.00 46.78 3.41
2076 5072 1.373059 GATGGGGCAGCTACTAGGC 59.627 63.158 0.00 0.00 0.00 3.93
2079 5075 0.104462 ATGGGATGGGGCAGCTACTA 60.104 55.000 0.00 0.00 0.00 1.82
2081 5077 1.228367 CATGGGATGGGGCAGCTAC 60.228 63.158 0.00 0.00 0.00 3.58
2082 5078 1.697394 ACATGGGATGGGGCAGCTA 60.697 57.895 0.00 0.00 33.60 3.32
2083 5079 3.025599 ACATGGGATGGGGCAGCT 61.026 61.111 0.00 0.00 33.60 4.24
2085 5081 1.454479 GACACATGGGATGGGGCAG 60.454 63.158 0.00 0.00 42.87 4.85
2086 5082 1.925285 GAGACACATGGGATGGGGCA 61.925 60.000 0.00 0.00 46.99 5.36
2087 5083 1.152881 GAGACACATGGGATGGGGC 60.153 63.158 0.00 0.00 44.04 5.80
2088 5084 0.471617 GAGAGACACATGGGATGGGG 59.528 60.000 0.00 0.00 38.23 4.96
2090 5086 0.531532 GCGAGAGACACATGGGATGG 60.532 60.000 0.00 0.00 33.60 3.51
2092 5088 0.689080 AGGCGAGAGACACATGGGAT 60.689 55.000 0.00 0.00 46.78 3.85
2093 5089 0.033503 TAGGCGAGAGACACATGGGA 60.034 55.000 0.00 0.00 46.78 4.37
2094 5090 0.387202 CTAGGCGAGAGACACATGGG 59.613 60.000 0.00 0.00 46.78 4.00
2095 5091 1.107114 ACTAGGCGAGAGACACATGG 58.893 55.000 0.28 0.00 46.78 3.66
2096 5092 2.287308 GCTACTAGGCGAGAGACACATG 60.287 54.545 0.28 0.00 46.78 3.21
2097 5093 1.950909 GCTACTAGGCGAGAGACACAT 59.049 52.381 0.28 0.00 46.78 3.21
2098 5094 1.065345 AGCTACTAGGCGAGAGACACA 60.065 52.381 0.28 0.00 46.78 3.72
2099 5095 1.332375 CAGCTACTAGGCGAGAGACAC 59.668 57.143 0.28 0.00 46.78 3.67
2100 5096 1.669604 CAGCTACTAGGCGAGAGACA 58.330 55.000 0.28 0.00 46.78 3.41
2101 5097 0.309612 GCAGCTACTAGGCGAGAGAC 59.690 60.000 0.28 0.00 42.06 3.36
2102 5098 0.820074 GGCAGCTACTAGGCGAGAGA 60.820 60.000 0.28 0.00 37.29 3.10
2103 5099 1.657556 GGCAGCTACTAGGCGAGAG 59.342 63.158 0.28 0.00 37.29 3.20
2104 5100 1.828660 GGGCAGCTACTAGGCGAGA 60.829 63.158 0.28 0.00 37.29 4.04
2105 5101 2.731374 GGGCAGCTACTAGGCGAG 59.269 66.667 0.00 0.00 37.29 5.03
2106 5102 2.838225 GGGGCAGCTACTAGGCGA 60.838 66.667 0.00 0.00 37.29 5.54
2107 5103 2.441822 GATGGGGCAGCTACTAGGCG 62.442 65.000 0.00 0.00 37.29 5.52
2161 5203 3.086282 AGAAGGAGAAGGAGAAGACGTC 58.914 50.000 7.70 7.70 0.00 4.34
2171 5213 1.349026 TGGCTTCACAGAAGGAGAAGG 59.651 52.381 8.66 0.00 39.24 3.46
2191 5233 1.495579 AATGGGCAGTCAGTCAGGCT 61.496 55.000 0.00 0.00 0.00 4.58
2193 5235 1.171308 CAAATGGGCAGTCAGTCAGG 58.829 55.000 0.00 0.00 0.00 3.86
2194 5236 1.171308 CCAAATGGGCAGTCAGTCAG 58.829 55.000 0.00 0.00 0.00 3.51
2198 5240 0.323178 AGCTCCAAATGGGCAGTCAG 60.323 55.000 13.15 0.00 34.96 3.51
2199 5241 0.322816 GAGCTCCAAATGGGCAGTCA 60.323 55.000 0.87 0.00 34.96 3.41
2200 5242 1.034292 GGAGCTCCAAATGGGCAGTC 61.034 60.000 28.43 0.00 34.96 3.51
2201 5243 1.000396 GGAGCTCCAAATGGGCAGT 60.000 57.895 28.43 0.00 34.96 4.40
2202 5244 1.755783 GGGAGCTCCAAATGGGCAG 60.756 63.158 33.29 0.84 37.91 4.85
2203 5245 2.215451 GAGGGAGCTCCAAATGGGCA 62.215 60.000 33.29 0.00 38.24 5.36
2204 5246 1.454663 GAGGGAGCTCCAAATGGGC 60.455 63.158 33.29 14.58 38.24 5.36
2205 5247 1.228510 GGAGGGAGCTCCAAATGGG 59.771 63.158 33.29 0.00 42.86 4.00
2206 5248 4.995594 GGAGGGAGCTCCAAATGG 57.004 61.111 33.29 0.00 42.86 3.16
2260 5303 0.250338 GCGTTGGGTTGACTCTTCCT 60.250 55.000 0.00 0.00 0.00 3.36
2389 5443 2.413765 GAGATCGCCGTGGGAGAC 59.586 66.667 0.00 0.00 33.72 3.36
2847 5913 2.738521 CGTGTGAGTGGAAGCGGG 60.739 66.667 0.00 0.00 0.00 6.13
2848 5914 1.734477 CTCGTGTGAGTGGAAGCGG 60.734 63.158 0.00 0.00 37.46 5.52
2849 5915 2.375766 GCTCGTGTGAGTGGAAGCG 61.376 63.158 0.00 0.00 44.48 4.68
2850 5916 1.287730 CTGCTCGTGTGAGTGGAAGC 61.288 60.000 0.00 0.00 44.48 3.86
2851 5917 1.287730 GCTGCTCGTGTGAGTGGAAG 61.288 60.000 0.00 0.00 44.48 3.46
2852 5918 1.300931 GCTGCTCGTGTGAGTGGAA 60.301 57.895 0.00 0.00 44.48 3.53
2891 5957 4.654262 TCCTTGGTAGTAGTTCATGATCCC 59.346 45.833 0.00 0.00 0.00 3.85
2892 5958 5.871396 TCCTTGGTAGTAGTTCATGATCC 57.129 43.478 0.00 0.00 0.00 3.36
2893 5959 7.770897 ACAAATCCTTGGTAGTAGTTCATGATC 59.229 37.037 0.00 0.00 36.82 2.92
2894 5960 7.633789 ACAAATCCTTGGTAGTAGTTCATGAT 58.366 34.615 0.00 0.00 36.82 2.45
2895 5961 7.016153 ACAAATCCTTGGTAGTAGTTCATGA 57.984 36.000 0.00 0.00 36.82 3.07
2896 5962 6.316390 GGACAAATCCTTGGTAGTAGTTCATG 59.684 42.308 0.00 0.00 42.45 3.07
2897 5963 6.415573 GGACAAATCCTTGGTAGTAGTTCAT 58.584 40.000 0.00 0.00 42.45 2.57
2898 5964 5.568023 CGGACAAATCCTTGGTAGTAGTTCA 60.568 44.000 0.00 0.00 43.73 3.18
2899 5965 4.868734 CGGACAAATCCTTGGTAGTAGTTC 59.131 45.833 0.00 0.00 43.73 3.01
2900 5966 4.828829 CGGACAAATCCTTGGTAGTAGTT 58.171 43.478 0.00 0.00 43.73 2.24
2984 6050 2.225068 ACCACGTGAACAGAGTCTTG 57.775 50.000 19.30 0.00 0.00 3.02
3002 6068 1.135083 AGTGGCGATAGTGCACTGTAC 60.135 52.381 29.57 16.81 36.28 2.90
3079 6145 3.600388 AGTGTGAGCTGTACTAATTGCC 58.400 45.455 0.00 0.00 0.00 4.52
3230 6301 8.397906 TCAAATATGCAGTAGAATAAGCACAAC 58.602 33.333 0.00 0.00 36.82 3.32
3283 6354 2.821378 CCAACATGGCTCAGTCAAATGA 59.179 45.455 0.00 0.00 0.00 2.57
3292 6363 1.682702 CCTGCATACCAACATGGCTCA 60.683 52.381 0.00 0.00 42.67 4.26
3480 6551 6.016860 CCACTCAAAGACAACTGAATTGATGA 60.017 38.462 0.00 0.00 41.23 2.92
3486 6557 2.887152 GGCCACTCAAAGACAACTGAAT 59.113 45.455 0.00 0.00 0.00 2.57
3506 6577 0.523072 CCAGTTTTGCACGGAGATGG 59.477 55.000 0.00 0.00 0.00 3.51
3513 6584 2.842208 TTGAGAACCAGTTTTGCACG 57.158 45.000 0.00 0.00 0.00 5.34
3529 6600 9.829507 AACATTGGACTTTTTCAATAACATTGA 57.170 25.926 0.00 0.00 32.92 2.57
3539 6610 8.713271 GTTACAAACAAACATTGGACTTTTTCA 58.287 29.630 0.00 0.00 34.12 2.69
3559 6630 4.393680 GCACTTATCCGGTGAATGTTACAA 59.606 41.667 0.00 0.00 36.89 2.41
3560 6631 3.936453 GCACTTATCCGGTGAATGTTACA 59.064 43.478 0.00 0.00 36.89 2.41
3561 6632 3.936453 TGCACTTATCCGGTGAATGTTAC 59.064 43.478 0.00 0.00 36.89 2.50
3562 6633 4.188462 CTGCACTTATCCGGTGAATGTTA 58.812 43.478 0.00 0.00 36.89 2.41
3570 6641 1.208776 GGTAACCTGCACTTATCCGGT 59.791 52.381 0.00 0.00 0.00 5.28
3571 6642 1.805120 CGGTAACCTGCACTTATCCGG 60.805 57.143 0.00 0.00 34.24 5.14
3579 6650 1.260561 CAATATCGCGGTAACCTGCAC 59.739 52.381 1.77 0.00 0.00 4.57
3587 6658 1.548719 CCATCCTCCAATATCGCGGTA 59.451 52.381 6.13 2.77 0.00 4.02
3608 6679 4.265073 AGAGATCACCTTCAAATTTCCGG 58.735 43.478 0.00 0.00 0.00 5.14
3688 6759 8.260818 TCTCTATTAAGGTCAACTTTGATCCTG 58.739 37.037 11.51 3.13 39.11 3.86
3709 6780 8.267894 CAGGTCCCTCAAAAAGATAAATCTCTA 58.732 37.037 0.00 0.00 35.76 2.43
3711 6782 7.112779 TCAGGTCCCTCAAAAAGATAAATCTC 58.887 38.462 0.00 0.00 35.76 2.75
3719 6790 9.768215 AATATTAATTCAGGTCCCTCAAAAAGA 57.232 29.630 0.00 0.00 0.00 2.52
3746 6817 5.964477 ACTTCCTCACCTATCCAATGAAGTA 59.036 40.000 0.00 0.00 39.34 2.24
3879 6950 6.597280 AGAGGAAATGACAGCACTTATTTCTC 59.403 38.462 12.85 9.77 38.76 2.87
3884 6955 5.426689 TCAGAGGAAATGACAGCACTTAT 57.573 39.130 0.00 0.00 0.00 1.73
3885 6956 4.890158 TCAGAGGAAATGACAGCACTTA 57.110 40.909 0.00 0.00 0.00 2.24
3887 6958 3.996921 ATCAGAGGAAATGACAGCACT 57.003 42.857 0.00 0.00 0.00 4.40
3888 6959 3.128242 CCAATCAGAGGAAATGACAGCAC 59.872 47.826 0.00 0.00 0.00 4.40
3889 6960 3.009363 TCCAATCAGAGGAAATGACAGCA 59.991 43.478 0.00 0.00 30.71 4.41
3890 6961 3.614092 TCCAATCAGAGGAAATGACAGC 58.386 45.455 0.00 0.00 30.71 4.40
3905 6976 5.452777 GGAAGCGCATTAGTATTTCCAATC 58.547 41.667 11.47 0.00 35.35 2.67
3925 6996 2.415983 TCACAGAGGAAGAAGGGGAA 57.584 50.000 0.00 0.00 0.00 3.97
3986 7058 3.866703 TTACCACCACCAACATCTGAA 57.133 42.857 0.00 0.00 0.00 3.02
3992 7064 2.363680 CTGCATTTTACCACCACCAACA 59.636 45.455 0.00 0.00 0.00 3.33
4049 7121 2.167281 ACACTCACCATTCTCAGGATCG 59.833 50.000 0.00 0.00 0.00 3.69
4070 7142 0.850100 TGCAAAACCTTCCCTCTGGA 59.150 50.000 0.00 0.00 39.54 3.86
4106 7178 7.616150 GGCATCATAGACTATAGAGGAAGGTAA 59.384 40.741 6.78 0.00 0.00 2.85
4123 7204 3.497103 TGTCCCTCATTGGCATCATAG 57.503 47.619 0.00 0.00 0.00 2.23
4132 7213 6.820656 GCCTATCAACTATATGTCCCTCATTG 59.179 42.308 0.00 0.00 37.91 2.82
4137 7218 6.715280 CAATGCCTATCAACTATATGTCCCT 58.285 40.000 0.00 0.00 0.00 4.20
4219 7300 3.911365 CGCTAAATATCTCGAGCAGTCTG 59.089 47.826 7.81 0.00 34.49 3.51
4405 7486 1.760029 TGTACCTCGATAGCCATGCAA 59.240 47.619 0.00 0.00 0.00 4.08
4417 7498 6.090898 GCATGGCTAAGTAATTATGTACCTCG 59.909 42.308 0.00 0.00 0.00 4.63
4460 7541 5.508567 TCCACCATGCTGAATTTCTGATAA 58.491 37.500 7.40 0.00 0.00 1.75
4477 7558 0.623723 GGCAGGAAACCTATCCACCA 59.376 55.000 0.00 0.00 42.27 4.17
4492 7573 1.901591 ATCTCACAACACCAAGGCAG 58.098 50.000 0.00 0.00 0.00 4.85
4513 7594 5.807520 ACAAGTTATTGATCAGCGAGTACTG 59.192 40.000 0.00 0.00 38.83 2.74
4594 7676 3.072476 GCCAGCTGGTAACCATCCTATAA 59.928 47.826 32.81 0.00 37.57 0.98
5016 8098 6.072893 GCCGAGAGACAAAAACCAACTAAATA 60.073 38.462 0.00 0.00 0.00 1.40
5405 8488 1.059098 TCTGTGCATGGTGAGAAGGT 58.941 50.000 0.00 0.00 0.00 3.50
5516 8599 2.483106 GCAACTTAACGGTCTTCCTTCC 59.517 50.000 0.00 0.00 0.00 3.46
5721 8804 6.434028 TGGTTCAAAATGAAACCAGAGGATAG 59.566 38.462 5.74 0.00 43.19 2.08
6063 10060 8.931385 ACACTAAAAATTTGCCACATATCATC 57.069 30.769 0.00 0.00 0.00 2.92
6089 10086 5.221541 TGCAATTTTGAGGATTAAACGGGTT 60.222 36.000 0.00 0.00 0.00 4.11
6115 10112 2.369532 ACAAAGGAAAATGCAGCCATGT 59.630 40.909 0.00 0.00 0.00 3.21
6147 10144 6.877611 TCAACAGATCAAAGGGAAGTTAAC 57.122 37.500 0.00 0.00 0.00 2.01
6242 10239 2.508663 GTACCGTGCTCGCTTCCC 60.509 66.667 1.89 0.00 35.54 3.97
6254 10251 5.163513 ACTTACTCGTTAAACCATGTACCG 58.836 41.667 0.00 0.00 0.00 4.02
6347 10344 0.955428 TTGCTGGAGATTCCACACGC 60.955 55.000 0.00 0.00 42.67 5.34
6439 10436 3.902881 ATGGCTACCTTCTTGTCTGAG 57.097 47.619 0.00 0.00 0.00 3.35
6479 10476 4.384208 GGCAGATAGGAAGCAAAGGTAAGA 60.384 45.833 0.00 0.00 0.00 2.10
6481 10478 3.371595 GGGCAGATAGGAAGCAAAGGTAA 60.372 47.826 0.00 0.00 0.00 2.85
6482 10479 2.172717 GGGCAGATAGGAAGCAAAGGTA 59.827 50.000 0.00 0.00 0.00 3.08
6533 10530 2.686915 CTGAATCCAGAAGTGGGCATTC 59.313 50.000 0.00 0.00 45.11 2.67
6619 10616 1.764180 CTCCTCTCGCGGAGTCGTAC 61.764 65.000 18.94 0.00 44.49 3.67
6637 10634 1.204113 CCTGCAGAACTTCTCCCCCT 61.204 60.000 17.39 0.00 0.00 4.79
6640 10637 0.676151 CTGCCTGCAGAACTTCTCCC 60.676 60.000 17.39 0.00 46.30 4.30
6642 10639 2.169842 GCTGCCTGCAGAACTTCTC 58.830 57.895 22.64 0.00 46.30 2.87
6758 10761 3.629398 GGGTATCTGGATGAGTGCAAAAG 59.371 47.826 0.00 0.00 0.00 2.27
6778 10781 3.119352 GCTACTCAAAATCCTGCTTTGGG 60.119 47.826 0.00 0.00 39.67 4.12
6796 10800 6.553524 ACGTAGTAATTCTGTCAGAAGCTAC 58.446 40.000 25.71 25.71 41.94 3.58
6898 10902 5.477607 AGGCACAACAATGTACTGTACTA 57.522 39.130 17.98 6.12 37.82 1.82
6941 10945 9.884465 GCTTGATTACGCAATATTTCTATCTTT 57.116 29.630 0.00 0.00 0.00 2.52
7010 11024 4.022329 GGAACGAATCATGGTGTTTTTCCT 60.022 41.667 0.00 0.00 0.00 3.36
7012 11026 4.865776 TGGAACGAATCATGGTGTTTTTC 58.134 39.130 0.00 0.00 0.00 2.29
7014 11028 4.261994 CCTTGGAACGAATCATGGTGTTTT 60.262 41.667 0.00 0.00 0.00 2.43
7015 11029 3.255642 CCTTGGAACGAATCATGGTGTTT 59.744 43.478 0.00 0.00 0.00 2.83
7092 11112 3.111741 TCCTGGGTCCTAAGTCCTAAC 57.888 52.381 0.00 0.00 0.00 2.34
7100 11120 5.098663 ACTAAGTTGATTCCTGGGTCCTAA 58.901 41.667 0.00 0.00 0.00 2.69
7101 11121 4.695606 ACTAAGTTGATTCCTGGGTCCTA 58.304 43.478 0.00 0.00 0.00 2.94
7129 11313 3.319137 TCAGCTGCTGACGATTACTTT 57.681 42.857 27.35 0.00 35.39 2.66
7168 11748 2.885644 CCGCGTGTCTTGGATCCG 60.886 66.667 7.39 0.00 0.00 4.18
7245 11825 1.359475 GGGCTACGATCGAGTGGTC 59.641 63.158 24.34 3.30 0.00 4.02
7267 11847 1.139947 GGCTGTAGAGTCGGTCTGC 59.860 63.158 0.00 0.00 38.35 4.26
7276 11856 2.546795 GGATGATCCAACGGCTGTAGAG 60.547 54.545 6.60 0.00 36.28 2.43
7301 11881 2.585247 GCGTACATCTGGGCCGAC 60.585 66.667 0.00 0.00 0.00 4.79
7306 11886 0.311165 CTACCGAGCGTACATCTGGG 59.689 60.000 10.36 10.36 35.81 4.45
7314 11894 5.152623 AGTATACATACCTACCGAGCGTA 57.847 43.478 5.50 0.00 33.79 4.42
7319 11899 4.655963 GGTGGAGTATACATACCTACCGA 58.344 47.826 5.50 0.00 33.79 4.69
7327 11907 2.813754 GCGTACCGGTGGAGTATACATA 59.186 50.000 19.93 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.