Multiple sequence alignment - TraesCS2A01G315500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G315500 chr2A 100.000 3026 0 0 1 3026 541196465 541199490 0.000000e+00 5589
1 TraesCS2A01G315500 chr2A 88.963 1205 77 25 1476 2649 541388102 541389281 0.000000e+00 1437
2 TraesCS2A01G315500 chr2B 94.282 1574 79 8 785 2349 477566343 477567914 0.000000e+00 2398
3 TraesCS2A01G315500 chr2B 94.444 648 33 2 141 788 477565482 477566126 0.000000e+00 994
4 TraesCS2A01G315500 chr2D 92.980 1567 88 10 785 2347 403466902 403468450 0.000000e+00 2265
5 TraesCS2A01G315500 chr2D 85.758 653 75 10 140 788 403466105 403466743 0.000000e+00 675
6 TraesCS2A01G315500 chr2D 87.069 348 41 4 2682 3026 285349006 285349352 1.020000e-104 390
7 TraesCS2A01G315500 chr2D 91.954 87 5 1 57 143 350745846 350745762 1.470000e-23 121
8 TraesCS2A01G315500 chr6D 87.608 347 41 2 2682 3026 101727301 101726955 4.700000e-108 401
9 TraesCS2A01G315500 chr6D 87.906 339 39 2 2690 3026 451075549 451075887 6.080000e-107 398
10 TraesCS2A01G315500 chr6D 87.537 337 42 0 2690 3026 313020476 313020812 1.020000e-104 390
11 TraesCS2A01G315500 chr6D 90.323 93 7 1 57 149 424720008 424719918 1.470000e-23 121
12 TraesCS2A01G315500 chr3D 87.464 351 38 5 2682 3026 109275075 109274725 1.690000e-107 399
13 TraesCS2A01G315500 chr3D 86.869 99 13 0 54 152 582913494 582913396 8.870000e-21 111
14 TraesCS2A01G315500 chr4D 88.060 335 38 2 2693 3026 392726012 392725679 2.190000e-106 396
15 TraesCS2A01G315500 chr4D 93.333 90 3 2 54 142 291470250 291470163 2.450000e-26 130
16 TraesCS2A01G315500 chr7D 87.761 335 39 2 2693 3026 576645027 576644694 1.020000e-104 390
17 TraesCS2A01G315500 chr6A 87.647 340 36 5 2690 3026 107109707 107110043 1.020000e-104 390
18 TraesCS2A01G315500 chr1D 86.313 358 45 4 2670 3026 444890178 444890532 1.320000e-103 387
19 TraesCS2A01G315500 chr1D 91.954 87 5 1 57 143 122770085 122770169 1.470000e-23 121
20 TraesCS2A01G315500 chr1B 91.398 93 6 1 51 143 566981836 566981926 3.170000e-25 126
21 TraesCS2A01G315500 chr6B 91.011 89 6 1 55 143 527526855 527526941 5.300000e-23 119
22 TraesCS2A01G315500 chr1A 91.011 89 4 2 57 143 134946114 134946200 1.910000e-22 117
23 TraesCS2A01G315500 chr1A 89.130 92 8 1 52 143 522462366 522462455 2.470000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G315500 chr2A 541196465 541199490 3025 False 5589 5589 100.000 1 3026 1 chr2A.!!$F1 3025
1 TraesCS2A01G315500 chr2A 541388102 541389281 1179 False 1437 1437 88.963 1476 2649 1 chr2A.!!$F2 1173
2 TraesCS2A01G315500 chr2B 477565482 477567914 2432 False 1696 2398 94.363 141 2349 2 chr2B.!!$F1 2208
3 TraesCS2A01G315500 chr2D 403466105 403468450 2345 False 1470 2265 89.369 140 2347 2 chr2D.!!$F2 2207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.036732 ACGGCCACACATCATTCAGT 59.963 50.0 2.24 0.0 0.0 3.41 F
73 74 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.0 0.00 0.0 0.0 3.28 F
76 77 0.328258 ACTCCCTCCGTCCCAAAATG 59.672 55.0 0.00 0.0 0.0 2.32 F
77 78 0.328258 CTCCCTCCGTCCCAAAATGT 59.672 55.0 0.00 0.0 0.0 2.71 F
951 1184 0.396556 TCCACTGGCCTATGAGCGTA 60.397 55.0 3.32 0.0 0.0 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 1258 0.106569 CCTCCATTGCCTGCCATACA 60.107 55.000 0.00 0.00 0.00 2.29 R
1685 1931 0.390340 TCAGGTGCGATTGACTCAGC 60.390 55.000 0.00 0.00 32.74 4.26 R
1686 1932 2.084610 TTCAGGTGCGATTGACTCAG 57.915 50.000 0.00 0.00 0.00 3.35 R
1687 1933 2.289631 ACATTCAGGTGCGATTGACTCA 60.290 45.455 0.00 0.00 0.00 3.41 R
2848 3133 0.023606 GTGCGCGTTATGCATTTTGC 59.976 50.000 3.54 5.55 46.97 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.919163 CCAGTTACTTACGGCCACA 57.081 52.632 2.24 0.00 0.00 4.17
19 20 1.435577 CCAGTTACTTACGGCCACAC 58.564 55.000 2.24 0.00 0.00 3.82
20 21 1.270412 CCAGTTACTTACGGCCACACA 60.270 52.381 2.24 0.00 0.00 3.72
21 22 2.614481 CCAGTTACTTACGGCCACACAT 60.614 50.000 2.24 0.00 0.00 3.21
22 23 2.671396 CAGTTACTTACGGCCACACATC 59.329 50.000 2.24 0.00 0.00 3.06
23 24 2.300723 AGTTACTTACGGCCACACATCA 59.699 45.455 2.24 0.00 0.00 3.07
24 25 3.055385 AGTTACTTACGGCCACACATCAT 60.055 43.478 2.24 0.00 0.00 2.45
25 26 2.489938 ACTTACGGCCACACATCATT 57.510 45.000 2.24 0.00 0.00 2.57
26 27 2.356135 ACTTACGGCCACACATCATTC 58.644 47.619 2.24 0.00 0.00 2.67
27 28 2.290008 ACTTACGGCCACACATCATTCA 60.290 45.455 2.24 0.00 0.00 2.57
28 29 2.022764 TACGGCCACACATCATTCAG 57.977 50.000 2.24 0.00 0.00 3.02
29 30 0.036732 ACGGCCACACATCATTCAGT 59.963 50.000 2.24 0.00 0.00 3.41
30 31 1.167851 CGGCCACACATCATTCAGTT 58.832 50.000 2.24 0.00 0.00 3.16
31 32 1.541147 CGGCCACACATCATTCAGTTT 59.459 47.619 2.24 0.00 0.00 2.66
32 33 2.414559 CGGCCACACATCATTCAGTTTC 60.415 50.000 2.24 0.00 0.00 2.78
33 34 2.557924 GGCCACACATCATTCAGTTTCA 59.442 45.455 0.00 0.00 0.00 2.69
34 35 3.366679 GGCCACACATCATTCAGTTTCAG 60.367 47.826 0.00 0.00 0.00 3.02
35 36 3.254166 GCCACACATCATTCAGTTTCAGT 59.746 43.478 0.00 0.00 0.00 3.41
36 37 4.455533 GCCACACATCATTCAGTTTCAGTA 59.544 41.667 0.00 0.00 0.00 2.74
37 38 5.124457 GCCACACATCATTCAGTTTCAGTAT 59.876 40.000 0.00 0.00 0.00 2.12
38 39 6.316140 GCCACACATCATTCAGTTTCAGTATA 59.684 38.462 0.00 0.00 0.00 1.47
39 40 7.466455 GCCACACATCATTCAGTTTCAGTATAG 60.466 40.741 0.00 0.00 0.00 1.31
40 41 7.765819 CCACACATCATTCAGTTTCAGTATAGA 59.234 37.037 0.00 0.00 0.00 1.98
41 42 8.598924 CACACATCATTCAGTTTCAGTATAGAC 58.401 37.037 0.00 0.00 0.00 2.59
42 43 8.314021 ACACATCATTCAGTTTCAGTATAGACA 58.686 33.333 0.00 0.00 0.00 3.41
43 44 9.322773 CACATCATTCAGTTTCAGTATAGACAT 57.677 33.333 0.00 0.00 0.00 3.06
44 45 9.896645 ACATCATTCAGTTTCAGTATAGACATT 57.103 29.630 0.00 0.00 0.00 2.71
46 47 9.896645 ATCATTCAGTTTCAGTATAGACATTGT 57.103 29.630 0.00 0.00 0.00 2.71
47 48 9.154847 TCATTCAGTTTCAGTATAGACATTGTG 57.845 33.333 0.00 0.00 0.00 3.33
48 49 6.968131 TCAGTTTCAGTATAGACATTGTGC 57.032 37.500 0.00 0.00 0.00 4.57
49 50 6.463360 TCAGTTTCAGTATAGACATTGTGCA 58.537 36.000 0.00 0.00 0.00 4.57
50 51 6.934083 TCAGTTTCAGTATAGACATTGTGCAA 59.066 34.615 0.00 0.00 0.00 4.08
51 52 7.607607 TCAGTTTCAGTATAGACATTGTGCAAT 59.392 33.333 0.00 0.00 0.00 3.56
52 53 8.239314 CAGTTTCAGTATAGACATTGTGCAATT 58.761 33.333 0.00 0.00 0.00 2.32
53 54 8.796475 AGTTTCAGTATAGACATTGTGCAATTT 58.204 29.630 0.00 0.00 0.00 1.82
56 57 9.448438 TTCAGTATAGACATTGTGCAATTTAGT 57.552 29.630 0.00 0.00 0.00 2.24
61 62 6.743575 AGACATTGTGCAATTTAGTACTCC 57.256 37.500 0.00 0.00 0.00 3.85
62 63 5.648092 AGACATTGTGCAATTTAGTACTCCC 59.352 40.000 0.00 0.00 0.00 4.30
63 64 5.570320 ACATTGTGCAATTTAGTACTCCCT 58.430 37.500 0.00 0.00 0.00 4.20
64 65 5.648092 ACATTGTGCAATTTAGTACTCCCTC 59.352 40.000 0.00 0.00 0.00 4.30
65 66 4.216411 TGTGCAATTTAGTACTCCCTCC 57.784 45.455 0.00 0.00 0.00 4.30
66 67 3.195661 GTGCAATTTAGTACTCCCTCCG 58.804 50.000 0.00 0.00 0.00 4.63
67 68 2.835764 TGCAATTTAGTACTCCCTCCGT 59.164 45.455 0.00 0.00 0.00 4.69
68 69 3.118884 TGCAATTTAGTACTCCCTCCGTC 60.119 47.826 0.00 0.00 0.00 4.79
69 70 3.740452 GCAATTTAGTACTCCCTCCGTCC 60.740 52.174 0.00 0.00 0.00 4.79
70 71 2.149973 TTTAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
71 72 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
72 73 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
73 74 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
74 75 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
75 76 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
76 77 0.328258 ACTCCCTCCGTCCCAAAATG 59.672 55.000 0.00 0.00 0.00 2.32
77 78 0.328258 CTCCCTCCGTCCCAAAATGT 59.672 55.000 0.00 0.00 0.00 2.71
78 79 1.557832 CTCCCTCCGTCCCAAAATGTA 59.442 52.381 0.00 0.00 0.00 2.29
79 80 1.986631 TCCCTCCGTCCCAAAATGTAA 59.013 47.619 0.00 0.00 0.00 2.41
80 81 2.026636 TCCCTCCGTCCCAAAATGTAAG 60.027 50.000 0.00 0.00 0.00 2.34
81 82 2.026636 CCCTCCGTCCCAAAATGTAAGA 60.027 50.000 0.00 0.00 0.00 2.10
82 83 3.007635 CCTCCGTCCCAAAATGTAAGAC 58.992 50.000 0.00 0.00 0.00 3.01
85 86 2.419667 CGTCCCAAAATGTAAGACGGT 58.580 47.619 3.08 0.00 44.86 4.83
86 87 2.809696 CGTCCCAAAATGTAAGACGGTT 59.190 45.455 3.08 0.00 44.86 4.44
87 88 3.251487 CGTCCCAAAATGTAAGACGGTTT 59.749 43.478 3.08 0.00 44.86 3.27
88 89 4.261280 CGTCCCAAAATGTAAGACGGTTTT 60.261 41.667 3.08 0.00 44.86 2.43
89 90 5.593968 GTCCCAAAATGTAAGACGGTTTTT 58.406 37.500 0.00 0.00 0.00 1.94
90 91 5.460748 GTCCCAAAATGTAAGACGGTTTTTG 59.539 40.000 6.51 6.51 37.14 2.44
91 92 5.360144 TCCCAAAATGTAAGACGGTTTTTGA 59.640 36.000 12.59 0.00 38.79 2.69
92 93 5.460748 CCCAAAATGTAAGACGGTTTTTGAC 59.539 40.000 12.59 0.00 38.79 3.18
93 94 6.037098 CCAAAATGTAAGACGGTTTTTGACA 58.963 36.000 12.59 3.15 38.79 3.58
94 95 6.020201 CCAAAATGTAAGACGGTTTTTGACAC 60.020 38.462 12.59 0.00 38.79 3.67
95 96 6.445357 AAATGTAAGACGGTTTTTGACACT 57.555 33.333 0.00 0.00 0.00 3.55
96 97 7.556733 AAATGTAAGACGGTTTTTGACACTA 57.443 32.000 0.00 0.00 0.00 2.74
97 98 7.739498 AATGTAAGACGGTTTTTGACACTAT 57.261 32.000 0.00 0.00 0.00 2.12
98 99 6.774354 TGTAAGACGGTTTTTGACACTATC 57.226 37.500 0.00 0.00 0.00 2.08
99 100 6.282167 TGTAAGACGGTTTTTGACACTATCA 58.718 36.000 0.00 0.00 34.65 2.15
100 101 6.932400 TGTAAGACGGTTTTTGACACTATCAT 59.068 34.615 0.00 0.00 37.11 2.45
101 102 8.089597 TGTAAGACGGTTTTTGACACTATCATA 58.910 33.333 0.00 0.00 37.11 2.15
102 103 7.596749 AAGACGGTTTTTGACACTATCATAG 57.403 36.000 0.00 0.00 37.11 2.23
103 104 6.698380 AGACGGTTTTTGACACTATCATAGT 58.302 36.000 0.00 0.00 37.11 2.12
104 105 7.833786 AGACGGTTTTTGACACTATCATAGTA 58.166 34.615 0.00 0.00 37.11 1.82
105 106 8.475639 AGACGGTTTTTGACACTATCATAGTAT 58.524 33.333 0.00 0.00 37.11 2.12
106 107 8.644318 ACGGTTTTTGACACTATCATAGTATC 57.356 34.615 0.00 0.00 37.11 2.24
107 108 8.255206 ACGGTTTTTGACACTATCATAGTATCA 58.745 33.333 1.34 1.34 40.20 2.15
108 109 9.093970 CGGTTTTTGACACTATCATAGTATCAA 57.906 33.333 13.56 13.56 46.91 2.57
135 136 7.552050 AAAACATCTTACATTTTGGGATGGA 57.448 32.000 0.00 0.00 38.33 3.41
136 137 6.780457 AACATCTTACATTTTGGGATGGAG 57.220 37.500 0.00 0.00 38.33 3.86
137 138 5.203528 ACATCTTACATTTTGGGATGGAGG 58.796 41.667 0.00 0.00 38.33 4.30
138 139 4.249638 TCTTACATTTTGGGATGGAGGG 57.750 45.455 0.00 0.00 0.00 4.30
192 193 4.421131 AGTTATGTCCAGACTCCAGAGTT 58.579 43.478 1.08 0.00 42.66 3.01
238 239 1.676967 GGTCCAGCTGCTTTGAGGG 60.677 63.158 8.66 0.00 0.00 4.30
241 242 0.840288 TCCAGCTGCTTTGAGGGGTA 60.840 55.000 8.66 0.00 0.00 3.69
295 297 2.306341 ATGAACTCTCAGACGGCATG 57.694 50.000 0.00 0.00 34.23 4.06
336 338 9.515226 TCATTAAGCTTACCATACAACTCTTTT 57.485 29.630 5.45 0.00 0.00 2.27
342 344 8.515414 AGCTTACCATACAACTCTTTTCATTTC 58.485 33.333 0.00 0.00 0.00 2.17
404 406 5.652744 AAAACTAGTAGCAGTTGACAACG 57.347 39.130 12.54 8.86 38.74 4.10
423 425 4.675190 ACGTGAAATGAAATCAGCTCTG 57.325 40.909 0.00 0.00 0.00 3.35
424 426 4.318332 ACGTGAAATGAAATCAGCTCTGA 58.682 39.130 1.67 1.67 44.59 3.27
425 427 4.756642 ACGTGAAATGAAATCAGCTCTGAA 59.243 37.500 3.47 0.00 43.58 3.02
426 428 5.413833 ACGTGAAATGAAATCAGCTCTGAAT 59.586 36.000 3.47 0.00 43.58 2.57
463 465 2.611473 GGAGATCACATGTCCTATGCGG 60.611 54.545 0.00 0.00 39.50 5.69
607 611 8.935614 ATGGACAATCATGTATGAGATTTGAT 57.064 30.769 11.55 0.00 40.74 2.57
654 658 7.481483 CACCGTGTGATTTTAATTGAGTGTATG 59.519 37.037 0.00 0.00 35.23 2.39
728 732 5.470098 GGTAACTGACAGACAACACATGAAT 59.530 40.000 10.08 0.00 0.00 2.57
815 1048 4.696899 TCGCTTCAAGAATCGAAGACTA 57.303 40.909 6.31 0.00 42.51 2.59
892 1125 1.468736 GCTAAGCTTGTCTTGCCATGC 60.469 52.381 9.86 0.00 36.25 4.06
951 1184 0.396556 TCCACTGGCCTATGAGCGTA 60.397 55.000 3.32 0.00 0.00 4.42
952 1185 0.464036 CCACTGGCCTATGAGCGTAA 59.536 55.000 3.32 0.00 0.00 3.18
953 1186 1.134521 CCACTGGCCTATGAGCGTAAA 60.135 52.381 3.32 0.00 0.00 2.01
954 1187 2.205074 CACTGGCCTATGAGCGTAAAG 58.795 52.381 3.32 0.00 0.00 1.85
966 1199 1.801309 GCGTAAAGCCCAGCAAACCA 61.801 55.000 0.00 0.00 40.81 3.67
996 1240 4.941263 CCAATGAAAAGGGAAGACATCGTA 59.059 41.667 0.00 0.00 0.00 3.43
997 1241 5.590259 CCAATGAAAAGGGAAGACATCGTAT 59.410 40.000 0.00 0.00 0.00 3.06
1014 1258 6.732896 ATCGTATAGATGGACTTGAAAGGT 57.267 37.500 0.00 0.00 38.36 3.50
1268 1513 1.133730 TCTGTAAAAACTTGCCCCGGT 60.134 47.619 0.00 0.00 0.00 5.28
1284 1529 3.275999 CCCGGTCTACCCTAAATTGTTG 58.724 50.000 0.00 0.00 0.00 3.33
1438 1683 3.788937 CAGGACATCCAAAATCAATGCC 58.211 45.455 0.00 0.00 38.89 4.40
1489 1734 2.214347 GCCGAAGCTAGAGGAAAATCC 58.786 52.381 6.26 0.00 34.26 3.01
1490 1735 2.420129 GCCGAAGCTAGAGGAAAATCCA 60.420 50.000 6.26 0.00 35.80 3.41
1584 1829 1.275010 TCGTGCAAGGTTCTAGCATCA 59.725 47.619 0.00 0.00 40.78 3.07
1615 1860 8.869109 TGATTGGAAATGAGGTTTGTTTAGATT 58.131 29.630 0.00 0.00 0.00 2.40
1678 1924 7.550551 TCAAATTTTGTGAACAACCTAAATGCA 59.449 29.630 8.89 0.00 35.28 3.96
1679 1925 7.856145 AATTTTGTGAACAACCTAAATGCAA 57.144 28.000 0.00 0.00 35.28 4.08
1685 1931 4.989797 TGAACAACCTAAATGCAAGCAATG 59.010 37.500 0.00 0.00 0.00 2.82
1700 1946 1.792993 GCAATGCTGAGTCAATCGCAC 60.793 52.381 7.62 0.00 39.22 5.34
1703 1949 0.671472 TGCTGAGTCAATCGCACCTG 60.671 55.000 1.62 0.00 34.18 4.00
1710 1956 3.932710 GAGTCAATCGCACCTGAATGTTA 59.067 43.478 0.00 0.00 0.00 2.41
1718 1964 2.936498 GCACCTGAATGTTACAGCGTAT 59.064 45.455 0.00 0.00 34.47 3.06
1719 1965 3.242413 GCACCTGAATGTTACAGCGTATG 60.242 47.826 0.00 0.00 34.47 2.39
1724 1970 2.614829 ATGTTACAGCGTATGGGTCC 57.385 50.000 0.00 0.00 0.00 4.46
1727 1973 0.325860 TTACAGCGTATGGGTCCCCT 60.326 55.000 5.13 0.00 36.94 4.79
1734 1980 0.984995 GTATGGGTCCCCTCTATGGC 59.015 60.000 5.13 0.00 36.94 4.40
1745 1991 4.593206 TCCCCTCTATGGCATTACAGTAAG 59.407 45.833 4.78 0.00 0.00 2.34
1751 1997 7.148086 CCTCTATGGCATTACAGTAAGCAAAAA 60.148 37.037 4.78 0.00 0.00 1.94
1926 2172 2.928116 CGAAGACCGGTTCAAGATTACC 59.072 50.000 9.42 0.00 33.91 2.85
1928 2174 2.262637 AGACCGGTTCAAGATTACCCA 58.737 47.619 9.42 0.00 0.00 4.51
1957 2203 2.037144 AGTACAAGAAGGTCACGGTGT 58.963 47.619 8.17 0.00 0.00 4.16
2001 2247 1.218047 CCCTGGCGTCGATCTTTCA 59.782 57.895 0.00 0.00 0.00 2.69
2132 2395 3.265221 AGATTTGGTGAGATGCTTCTGGA 59.735 43.478 6.88 0.00 30.30 3.86
2173 2437 1.817099 GATGAGGTCCTGCTTGGCG 60.817 63.158 0.00 0.00 35.26 5.69
2214 2485 1.125711 ACGGGTTCCCTACAGTGCTT 61.126 55.000 6.31 0.00 0.00 3.91
2266 2537 1.619827 CACAAATGGACTTGGCCACAT 59.380 47.619 3.88 1.96 41.56 3.21
2317 2588 2.587194 GTCTCGCGCCAGCATCAT 60.587 61.111 0.00 0.00 45.49 2.45
2318 2589 2.279717 TCTCGCGCCAGCATCATC 60.280 61.111 0.00 0.00 45.49 2.92
2381 2657 8.554835 AATAAGGAAGAAAGAAAGACTAGCAC 57.445 34.615 0.00 0.00 0.00 4.40
2382 2658 5.816955 AGGAAGAAAGAAAGACTAGCACT 57.183 39.130 0.00 0.00 0.00 4.40
2418 2694 6.801862 AGAAAATCGACGAAATTTAAGCTTGG 59.198 34.615 9.86 0.00 0.00 3.61
2440 2716 2.320781 TGGATAGTAGAAGGCTCCTGC 58.679 52.381 0.00 0.00 38.76 4.85
2489 2765 2.765785 CGAGCGCGACAAGTCAAG 59.234 61.111 12.10 0.00 40.82 3.02
2538 2814 7.609960 AGATGGATGTATCATGTATGACAGAC 58.390 38.462 0.00 0.00 40.03 3.51
2546 2822 3.877559 CATGTATGACAGACATGTGGGT 58.122 45.455 27.49 0.00 45.99 4.51
2551 2827 2.259917 TGACAGACATGTGGGTCTCAT 58.740 47.619 20.88 0.00 46.05 2.90
2556 2832 3.110705 AGACATGTGGGTCTCATAGCTT 58.889 45.455 1.15 0.00 44.63 3.74
2590 2875 0.322008 GTGAGGAAGAACTGGGCCTG 60.322 60.000 9.11 9.11 0.00 4.85
2601 2886 4.783227 AGAACTGGGCCTGAGAATTACTAA 59.217 41.667 18.12 0.00 0.00 2.24
2623 2908 9.906575 ACTAAGAAAGTATGGCGGAGAACGAAG 62.907 44.444 0.00 0.00 40.36 3.79
2633 2918 3.155093 GGAGAACGAAGCGTATGGTAA 57.845 47.619 0.00 0.00 39.99 2.85
2634 2919 3.114065 GGAGAACGAAGCGTATGGTAAG 58.886 50.000 0.00 0.00 39.99 2.34
2649 2934 6.978659 CGTATGGTAAGAGAAATTGTCTAGCA 59.021 38.462 0.00 0.00 36.41 3.49
2650 2935 7.043325 CGTATGGTAAGAGAAATTGTCTAGCAC 60.043 40.741 0.00 0.00 36.41 4.40
2651 2936 6.360370 TGGTAAGAGAAATTGTCTAGCACT 57.640 37.500 0.00 0.00 36.41 4.40
2652 2937 7.476540 TGGTAAGAGAAATTGTCTAGCACTA 57.523 36.000 0.00 0.00 36.41 2.74
2653 2938 7.321153 TGGTAAGAGAAATTGTCTAGCACTAC 58.679 38.462 0.00 0.00 36.41 2.73
2654 2939 7.178628 TGGTAAGAGAAATTGTCTAGCACTACT 59.821 37.037 0.00 0.00 36.41 2.57
2655 2940 7.703197 GGTAAGAGAAATTGTCTAGCACTACTC 59.297 40.741 0.00 0.00 36.41 2.59
2656 2941 7.475137 AAGAGAAATTGTCTAGCACTACTCT 57.525 36.000 0.00 0.00 36.41 3.24
2657 2942 8.582657 AAGAGAAATTGTCTAGCACTACTCTA 57.417 34.615 0.00 0.00 36.41 2.43
2658 2943 8.220755 AGAGAAATTGTCTAGCACTACTCTAG 57.779 38.462 0.00 0.00 36.41 2.43
2659 2944 6.801575 AGAAATTGTCTAGCACTACTCTAGC 58.198 40.000 0.00 0.00 33.56 3.42
2660 2945 6.605594 AGAAATTGTCTAGCACTACTCTAGCT 59.394 38.462 0.00 0.00 42.14 3.32
2661 2946 6.385649 AATTGTCTAGCACTACTCTAGCTC 57.614 41.667 0.00 0.00 39.68 4.09
2662 2947 4.489306 TGTCTAGCACTACTCTAGCTCA 57.511 45.455 0.00 0.00 39.68 4.26
2663 2948 4.447290 TGTCTAGCACTACTCTAGCTCAG 58.553 47.826 0.00 0.00 39.68 3.35
2664 2949 3.250040 GTCTAGCACTACTCTAGCTCAGC 59.750 52.174 0.00 0.00 39.68 4.26
2665 2950 2.435372 AGCACTACTCTAGCTCAGCT 57.565 50.000 3.60 3.60 43.41 4.24
2666 2951 2.733956 AGCACTACTCTAGCTCAGCTT 58.266 47.619 3.31 0.00 40.44 3.74
2667 2952 3.096092 AGCACTACTCTAGCTCAGCTTT 58.904 45.455 3.31 0.00 40.44 3.51
2668 2953 3.119173 AGCACTACTCTAGCTCAGCTTTG 60.119 47.826 3.31 0.00 40.44 2.77
2669 2954 3.367910 GCACTACTCTAGCTCAGCTTTGT 60.368 47.826 3.31 4.20 40.44 2.83
2670 2955 4.420168 CACTACTCTAGCTCAGCTTTGTC 58.580 47.826 3.31 0.00 40.44 3.18
2671 2956 3.445805 ACTACTCTAGCTCAGCTTTGTCC 59.554 47.826 3.31 0.00 40.44 4.02
2672 2957 2.251818 ACTCTAGCTCAGCTTTGTCCA 58.748 47.619 3.31 0.00 40.44 4.02
2673 2958 2.836981 ACTCTAGCTCAGCTTTGTCCAT 59.163 45.455 3.31 0.00 40.44 3.41
2674 2959 3.196463 CTCTAGCTCAGCTTTGTCCATG 58.804 50.000 3.31 0.00 40.44 3.66
2675 2960 2.833943 TCTAGCTCAGCTTTGTCCATGA 59.166 45.455 3.31 0.00 40.44 3.07
2676 2961 2.803030 AGCTCAGCTTTGTCCATGAT 57.197 45.000 0.00 0.00 33.89 2.45
2677 2962 2.641305 AGCTCAGCTTTGTCCATGATC 58.359 47.619 0.00 0.00 33.89 2.92
2678 2963 2.239150 AGCTCAGCTTTGTCCATGATCT 59.761 45.455 0.00 0.00 33.89 2.75
2679 2964 3.015327 GCTCAGCTTTGTCCATGATCTT 58.985 45.455 0.00 0.00 0.00 2.40
2680 2965 3.065095 GCTCAGCTTTGTCCATGATCTTC 59.935 47.826 0.00 0.00 0.00 2.87
2681 2966 4.515361 CTCAGCTTTGTCCATGATCTTCT 58.485 43.478 0.00 0.00 0.00 2.85
2682 2967 5.668471 CTCAGCTTTGTCCATGATCTTCTA 58.332 41.667 0.00 0.00 0.00 2.10
2683 2968 6.053632 TCAGCTTTGTCCATGATCTTCTAA 57.946 37.500 0.00 0.00 0.00 2.10
2684 2969 6.475504 TCAGCTTTGTCCATGATCTTCTAAA 58.524 36.000 0.00 0.00 0.00 1.85
2685 2970 6.942005 TCAGCTTTGTCCATGATCTTCTAAAA 59.058 34.615 0.00 0.00 0.00 1.52
2686 2971 7.448161 TCAGCTTTGTCCATGATCTTCTAAAAA 59.552 33.333 0.00 0.00 0.00 1.94
2706 2991 4.946784 AAAAGATGACGATAACTGCCAC 57.053 40.909 0.00 0.00 0.00 5.01
2707 2992 3.610040 AAGATGACGATAACTGCCACA 57.390 42.857 0.00 0.00 0.00 4.17
2708 2993 3.827008 AGATGACGATAACTGCCACAT 57.173 42.857 0.00 0.00 0.00 3.21
2709 2994 3.461061 AGATGACGATAACTGCCACATG 58.539 45.455 0.00 0.00 0.00 3.21
2710 2995 1.368641 TGACGATAACTGCCACATGC 58.631 50.000 0.00 0.00 41.77 4.06
2711 2996 0.301687 GACGATAACTGCCACATGCG 59.698 55.000 0.00 0.00 45.60 4.73
2712 2997 0.391130 ACGATAACTGCCACATGCGT 60.391 50.000 0.00 0.00 45.60 5.24
2713 2998 0.026674 CGATAACTGCCACATGCGTG 59.973 55.000 3.82 3.82 45.60 5.34
2723 3008 0.521291 CACATGCGTGGGTGTTAAGG 59.479 55.000 11.36 0.00 39.64 2.69
2724 3009 0.608035 ACATGCGTGGGTGTTAAGGG 60.608 55.000 11.36 0.00 0.00 3.95
2725 3010 0.322098 CATGCGTGGGTGTTAAGGGA 60.322 55.000 0.00 0.00 0.00 4.20
2726 3011 0.623723 ATGCGTGGGTGTTAAGGGAT 59.376 50.000 0.00 0.00 0.00 3.85
2727 3012 0.402504 TGCGTGGGTGTTAAGGGATT 59.597 50.000 0.00 0.00 0.00 3.01
2728 3013 1.202952 TGCGTGGGTGTTAAGGGATTT 60.203 47.619 0.00 0.00 0.00 2.17
2729 3014 1.201414 GCGTGGGTGTTAAGGGATTTG 59.799 52.381 0.00 0.00 0.00 2.32
2730 3015 2.510613 CGTGGGTGTTAAGGGATTTGT 58.489 47.619 0.00 0.00 0.00 2.83
2731 3016 2.888414 CGTGGGTGTTAAGGGATTTGTT 59.112 45.455 0.00 0.00 0.00 2.83
2732 3017 3.057806 CGTGGGTGTTAAGGGATTTGTTC 60.058 47.826 0.00 0.00 0.00 3.18
2733 3018 3.892588 GTGGGTGTTAAGGGATTTGTTCA 59.107 43.478 0.00 0.00 0.00 3.18
2734 3019 3.892588 TGGGTGTTAAGGGATTTGTTCAC 59.107 43.478 0.00 0.00 0.00 3.18
2735 3020 3.892588 GGGTGTTAAGGGATTTGTTCACA 59.107 43.478 0.00 0.00 0.00 3.58
2736 3021 4.526650 GGGTGTTAAGGGATTTGTTCACAT 59.473 41.667 0.00 0.00 0.00 3.21
2737 3022 5.469479 GGTGTTAAGGGATTTGTTCACATG 58.531 41.667 0.00 0.00 0.00 3.21
2738 3023 5.010617 GGTGTTAAGGGATTTGTTCACATGT 59.989 40.000 0.00 0.00 0.00 3.21
2739 3024 6.462347 GGTGTTAAGGGATTTGTTCACATGTT 60.462 38.462 0.00 0.00 0.00 2.71
2740 3025 6.983890 GTGTTAAGGGATTTGTTCACATGTTT 59.016 34.615 0.00 0.00 0.00 2.83
2741 3026 7.494298 GTGTTAAGGGATTTGTTCACATGTTTT 59.506 33.333 0.00 0.00 0.00 2.43
2742 3027 7.493971 TGTTAAGGGATTTGTTCACATGTTTTG 59.506 33.333 0.00 0.00 0.00 2.44
2743 3028 5.612725 AGGGATTTGTTCACATGTTTTGT 57.387 34.783 0.00 0.00 39.91 2.83
2757 3042 7.194607 ACATGTTTTGTGTGATGTCTAAGAG 57.805 36.000 0.00 0.00 37.11 2.85
2758 3043 6.205464 ACATGTTTTGTGTGATGTCTAAGAGG 59.795 38.462 0.00 0.00 37.11 3.69
2759 3044 5.924356 TGTTTTGTGTGATGTCTAAGAGGA 58.076 37.500 0.00 0.00 0.00 3.71
2760 3045 5.758296 TGTTTTGTGTGATGTCTAAGAGGAC 59.242 40.000 0.00 0.00 36.81 3.85
2761 3046 5.808366 TTTGTGTGATGTCTAAGAGGACT 57.192 39.130 0.00 0.00 37.16 3.85
2762 3047 6.911250 TTTGTGTGATGTCTAAGAGGACTA 57.089 37.500 0.00 0.00 37.16 2.59
2763 3048 6.911250 TTGTGTGATGTCTAAGAGGACTAA 57.089 37.500 0.00 0.00 37.16 2.24
2764 3049 6.268825 TGTGTGATGTCTAAGAGGACTAAC 57.731 41.667 0.00 0.00 37.16 2.34
2765 3050 5.185249 TGTGTGATGTCTAAGAGGACTAACC 59.815 44.000 0.00 0.00 37.16 2.85
2766 3051 4.710375 TGTGATGTCTAAGAGGACTAACCC 59.290 45.833 0.00 0.00 40.05 4.11
2767 3052 4.710375 GTGATGTCTAAGAGGACTAACCCA 59.290 45.833 0.00 0.00 40.05 4.51
2768 3053 4.710375 TGATGTCTAAGAGGACTAACCCAC 59.290 45.833 0.00 0.00 40.05 4.61
2769 3054 4.122337 TGTCTAAGAGGACTAACCCACA 57.878 45.455 0.00 0.00 40.05 4.17
2770 3055 3.830755 TGTCTAAGAGGACTAACCCACAC 59.169 47.826 0.00 0.00 40.05 3.82
2771 3056 3.087031 TCTAAGAGGACTAACCCACACG 58.913 50.000 0.00 0.00 40.05 4.49
2772 3057 1.713297 AAGAGGACTAACCCACACGT 58.287 50.000 0.00 0.00 40.05 4.49
2773 3058 2.592102 AGAGGACTAACCCACACGTA 57.408 50.000 0.00 0.00 40.05 3.57
2774 3059 2.444421 AGAGGACTAACCCACACGTAG 58.556 52.381 0.00 0.00 40.05 3.51
2775 3060 1.475682 GAGGACTAACCCACACGTAGG 59.524 57.143 0.00 0.00 40.05 3.18
2776 3061 0.108472 GGACTAACCCACACGTAGGC 60.108 60.000 0.78 0.00 0.00 3.93
2777 3062 0.457337 GACTAACCCACACGTAGGCG 60.457 60.000 0.78 0.00 44.93 5.52
2789 3074 2.713927 CGTAGGCGTATGAGCAAAAC 57.286 50.000 0.00 0.00 39.27 2.43
2790 3075 1.996898 CGTAGGCGTATGAGCAAAACA 59.003 47.619 0.00 0.00 39.27 2.83
2791 3076 2.413796 CGTAGGCGTATGAGCAAAACAA 59.586 45.455 0.00 0.00 39.27 2.83
2792 3077 3.063452 CGTAGGCGTATGAGCAAAACAAT 59.937 43.478 0.00 0.00 39.27 2.71
2793 3078 3.764885 AGGCGTATGAGCAAAACAATC 57.235 42.857 0.00 0.00 39.27 2.67
2794 3079 3.081061 AGGCGTATGAGCAAAACAATCA 58.919 40.909 0.00 0.00 39.27 2.57
2795 3080 3.505680 AGGCGTATGAGCAAAACAATCAA 59.494 39.130 0.00 0.00 39.27 2.57
2796 3081 4.158394 AGGCGTATGAGCAAAACAATCAAT 59.842 37.500 0.00 0.00 39.27 2.57
2797 3082 4.266029 GGCGTATGAGCAAAACAATCAATG 59.734 41.667 0.00 0.00 39.27 2.82
2798 3083 4.858692 GCGTATGAGCAAAACAATCAATGT 59.141 37.500 0.00 0.00 39.68 2.71
2799 3084 5.003778 GCGTATGAGCAAAACAATCAATGTC 59.996 40.000 0.00 0.00 38.03 3.06
2800 3085 5.512788 CGTATGAGCAAAACAATCAATGTCC 59.487 40.000 0.00 0.00 42.99 4.02
2801 3086 4.933505 TGAGCAAAACAATCAATGTCCA 57.066 36.364 0.00 0.00 42.99 4.02
2802 3087 4.619973 TGAGCAAAACAATCAATGTCCAC 58.380 39.130 0.00 0.00 42.99 4.02
2803 3088 4.099113 TGAGCAAAACAATCAATGTCCACA 59.901 37.500 0.00 0.00 42.99 4.17
2804 3089 4.370917 AGCAAAACAATCAATGTCCACAC 58.629 39.130 0.00 0.00 42.99 3.82
2805 3090 3.182173 GCAAAACAATCAATGTCCACACG 59.818 43.478 0.00 0.00 42.99 4.49
2806 3091 2.704725 AACAATCAATGTCCACACGC 57.295 45.000 0.00 0.00 42.99 5.34
2807 3092 1.896220 ACAATCAATGTCCACACGCT 58.104 45.000 0.00 0.00 37.96 5.07
2808 3093 2.229792 ACAATCAATGTCCACACGCTT 58.770 42.857 0.00 0.00 37.96 4.68
2809 3094 2.622942 ACAATCAATGTCCACACGCTTT 59.377 40.909 0.00 0.00 37.96 3.51
2810 3095 3.068024 ACAATCAATGTCCACACGCTTTT 59.932 39.130 0.00 0.00 37.96 2.27
2811 3096 4.050553 CAATCAATGTCCACACGCTTTTT 58.949 39.130 0.00 0.00 0.00 1.94
2830 3115 2.358322 TTTTTCCTTGCGGTTCCTCT 57.642 45.000 0.00 0.00 0.00 3.69
2831 3116 1.892209 TTTTCCTTGCGGTTCCTCTC 58.108 50.000 0.00 0.00 0.00 3.20
2832 3117 0.762418 TTTCCTTGCGGTTCCTCTCA 59.238 50.000 0.00 0.00 0.00 3.27
2833 3118 0.034896 TTCCTTGCGGTTCCTCTCAC 59.965 55.000 0.00 0.00 0.00 3.51
2834 3119 1.118965 TCCTTGCGGTTCCTCTCACA 61.119 55.000 0.00 0.00 0.00 3.58
2835 3120 0.951040 CCTTGCGGTTCCTCTCACAC 60.951 60.000 0.00 0.00 0.00 3.82
2836 3121 1.284982 CTTGCGGTTCCTCTCACACG 61.285 60.000 0.00 0.00 0.00 4.49
2837 3122 2.023414 TTGCGGTTCCTCTCACACGT 62.023 55.000 0.00 0.00 0.00 4.49
2838 3123 1.733399 GCGGTTCCTCTCACACGTC 60.733 63.158 0.00 0.00 0.00 4.34
2839 3124 1.957562 CGGTTCCTCTCACACGTCT 59.042 57.895 0.00 0.00 0.00 4.18
2840 3125 1.162698 CGGTTCCTCTCACACGTCTA 58.837 55.000 0.00 0.00 0.00 2.59
2841 3126 1.135746 CGGTTCCTCTCACACGTCTAC 60.136 57.143 0.00 0.00 0.00 2.59
2842 3127 1.135746 GGTTCCTCTCACACGTCTACG 60.136 57.143 0.04 0.04 46.33 3.51
2852 3137 4.347096 CGTCTACGTGTGGGCAAA 57.653 55.556 0.00 0.00 34.11 3.68
2853 3138 2.607457 CGTCTACGTGTGGGCAAAA 58.393 52.632 0.00 0.00 34.11 2.44
2854 3139 1.153353 CGTCTACGTGTGGGCAAAAT 58.847 50.000 0.00 0.00 34.11 1.82
2855 3140 1.136085 CGTCTACGTGTGGGCAAAATG 60.136 52.381 0.00 0.00 34.11 2.32
2856 3141 0.878416 TCTACGTGTGGGCAAAATGC 59.122 50.000 0.00 0.00 44.08 3.56
2866 3151 2.357792 GCAAAATGCATAACGCGCA 58.642 47.368 5.73 0.00 46.97 6.09
2867 3152 0.023606 GCAAAATGCATAACGCGCAC 59.976 50.000 5.73 0.00 46.97 5.34
2868 3153 1.334994 CAAAATGCATAACGCGCACA 58.665 45.000 5.73 0.00 46.97 4.57
2869 3154 1.919263 CAAAATGCATAACGCGCACAT 59.081 42.857 5.73 0.00 46.97 3.21
2870 3155 1.547909 AAATGCATAACGCGCACATG 58.452 45.000 5.73 8.50 46.97 3.21
2871 3156 0.731994 AATGCATAACGCGCACATGA 59.268 45.000 5.73 0.00 46.97 3.07
2872 3157 0.027979 ATGCATAACGCGCACATGAC 59.972 50.000 5.73 4.58 46.97 3.06
2873 3158 1.297598 GCATAACGCGCACATGACC 60.298 57.895 5.73 0.00 0.00 4.02
2874 3159 1.705337 GCATAACGCGCACATGACCT 61.705 55.000 5.73 0.00 0.00 3.85
2875 3160 0.301687 CATAACGCGCACATGACCTC 59.698 55.000 5.73 0.00 0.00 3.85
2876 3161 0.175760 ATAACGCGCACATGACCTCT 59.824 50.000 5.73 0.00 0.00 3.69
2877 3162 0.457853 TAACGCGCACATGACCTCTC 60.458 55.000 5.73 0.00 0.00 3.20
2878 3163 2.159819 AACGCGCACATGACCTCTCT 62.160 55.000 5.73 0.00 0.00 3.10
2879 3164 1.446792 CGCGCACATGACCTCTCTT 60.447 57.895 8.75 0.00 0.00 2.85
2880 3165 0.179137 CGCGCACATGACCTCTCTTA 60.179 55.000 8.75 0.00 0.00 2.10
2881 3166 1.565305 GCGCACATGACCTCTCTTAG 58.435 55.000 0.30 0.00 0.00 2.18
2882 3167 1.565305 CGCACATGACCTCTCTTAGC 58.435 55.000 0.00 0.00 0.00 3.09
2883 3168 1.804372 CGCACATGACCTCTCTTAGCC 60.804 57.143 0.00 0.00 0.00 3.93
2884 3169 1.208052 GCACATGACCTCTCTTAGCCA 59.792 52.381 0.00 0.00 0.00 4.75
2885 3170 2.898705 CACATGACCTCTCTTAGCCAC 58.101 52.381 0.00 0.00 0.00 5.01
2886 3171 1.834263 ACATGACCTCTCTTAGCCACC 59.166 52.381 0.00 0.00 0.00 4.61
2887 3172 2.114616 CATGACCTCTCTTAGCCACCT 58.885 52.381 0.00 0.00 0.00 4.00
2888 3173 3.300388 CATGACCTCTCTTAGCCACCTA 58.700 50.000 0.00 0.00 0.00 3.08
2889 3174 3.689872 TGACCTCTCTTAGCCACCTAT 57.310 47.619 0.00 0.00 0.00 2.57
2890 3175 3.567397 TGACCTCTCTTAGCCACCTATC 58.433 50.000 0.00 0.00 0.00 2.08
2891 3176 3.205507 TGACCTCTCTTAGCCACCTATCT 59.794 47.826 0.00 0.00 0.00 1.98
2892 3177 3.824443 GACCTCTCTTAGCCACCTATCTC 59.176 52.174 0.00 0.00 0.00 2.75
2893 3178 3.205507 ACCTCTCTTAGCCACCTATCTCA 59.794 47.826 0.00 0.00 0.00 3.27
2894 3179 3.572255 CCTCTCTTAGCCACCTATCTCAC 59.428 52.174 0.00 0.00 0.00 3.51
2895 3180 3.215151 TCTCTTAGCCACCTATCTCACG 58.785 50.000 0.00 0.00 0.00 4.35
2896 3181 2.294791 CTCTTAGCCACCTATCTCACGG 59.705 54.545 0.00 0.00 0.00 4.94
2897 3182 2.032620 CTTAGCCACCTATCTCACGGT 58.967 52.381 0.00 0.00 0.00 4.83
2898 3183 1.688772 TAGCCACCTATCTCACGGTC 58.311 55.000 0.00 0.00 0.00 4.79
2899 3184 1.043673 AGCCACCTATCTCACGGTCC 61.044 60.000 0.00 0.00 0.00 4.46
2900 3185 2.029307 GCCACCTATCTCACGGTCCC 62.029 65.000 0.00 0.00 0.00 4.46
2901 3186 1.734137 CACCTATCTCACGGTCCCG 59.266 63.158 3.76 3.76 46.03 5.14
2902 3187 2.125961 ACCTATCTCACGGTCCCGC 61.126 63.158 5.47 0.00 44.19 6.13
2903 3188 2.125326 CCTATCTCACGGTCCCGCA 61.125 63.158 5.47 0.00 44.19 5.69
2904 3189 1.065928 CTATCTCACGGTCCCGCAC 59.934 63.158 5.47 0.00 44.19 5.34
2905 3190 2.663630 CTATCTCACGGTCCCGCACG 62.664 65.000 5.47 0.00 44.19 5.34
2920 3205 4.295119 ACGCCCCGTGTGACAGTC 62.295 66.667 0.00 0.00 39.18 3.51
2921 3206 4.293648 CGCCCCGTGTGACAGTCA 62.294 66.667 0.00 0.00 0.00 3.41
2923 3208 2.030562 CCCCGTGTGACAGTCACC 59.969 66.667 27.51 18.37 46.40 4.02
2924 3209 2.802724 CCCCGTGTGACAGTCACCA 61.803 63.158 27.51 14.75 46.40 4.17
2925 3210 1.594293 CCCGTGTGACAGTCACCAC 60.594 63.158 27.51 22.51 46.40 4.16
2926 3211 1.949133 CCGTGTGACAGTCACCACG 60.949 63.158 31.06 31.06 46.40 4.94
2927 3212 2.585869 CGTGTGACAGTCACCACGC 61.586 63.158 29.12 18.27 46.40 5.34
2928 3213 2.279186 TGTGACAGTCACCACGCG 60.279 61.111 27.51 3.53 46.40 6.01
2929 3214 2.279252 GTGACAGTCACCACGCGT 60.279 61.111 21.52 5.58 41.37 6.01
2930 3215 2.027024 TGACAGTCACCACGCGTC 59.973 61.111 9.86 0.00 32.97 5.19
2931 3216 2.733593 GACAGTCACCACGCGTCC 60.734 66.667 9.86 0.00 0.00 4.79
2932 3217 4.295119 ACAGTCACCACGCGTCCC 62.295 66.667 9.86 0.00 0.00 4.46
2937 3222 4.789075 CACCACGCGTCCCCGTAG 62.789 72.222 9.86 0.00 39.83 3.51
2939 3224 4.060038 CCACGCGTCCCCGTAGTT 62.060 66.667 9.86 0.00 39.83 2.24
2940 3225 2.807895 CACGCGTCCCCGTAGTTG 60.808 66.667 9.86 0.00 39.83 3.16
2941 3226 4.729856 ACGCGTCCCCGTAGTTGC 62.730 66.667 5.58 0.00 40.08 4.17
2943 3228 4.382320 GCGTCCCCGTAGTTGCCA 62.382 66.667 0.00 0.00 36.15 4.92
2944 3229 2.582436 CGTCCCCGTAGTTGCCAT 59.418 61.111 0.00 0.00 0.00 4.40
2945 3230 1.813753 CGTCCCCGTAGTTGCCATG 60.814 63.158 0.00 0.00 0.00 3.66
2946 3231 1.451387 GTCCCCGTAGTTGCCATGG 60.451 63.158 7.63 7.63 0.00 3.66
2947 3232 1.921346 TCCCCGTAGTTGCCATGGT 60.921 57.895 14.67 0.00 0.00 3.55
2948 3233 1.451387 CCCCGTAGTTGCCATGGTC 60.451 63.158 14.67 6.41 0.00 4.02
2949 3234 1.451387 CCCGTAGTTGCCATGGTCC 60.451 63.158 14.67 1.25 0.00 4.46
2950 3235 1.813753 CCGTAGTTGCCATGGTCCG 60.814 63.158 14.67 6.72 0.00 4.79
2951 3236 1.813753 CGTAGTTGCCATGGTCCGG 60.814 63.158 14.67 0.00 0.00 5.14
2952 3237 1.600107 GTAGTTGCCATGGTCCGGA 59.400 57.895 14.67 0.00 0.00 5.14
2953 3238 0.180406 GTAGTTGCCATGGTCCGGAT 59.820 55.000 14.67 0.00 0.00 4.18
2954 3239 0.468226 TAGTTGCCATGGTCCGGATC 59.532 55.000 14.67 7.97 0.00 3.36
2955 3240 1.823899 GTTGCCATGGTCCGGATCC 60.824 63.158 13.41 13.86 0.00 3.36
2956 3241 2.000701 TTGCCATGGTCCGGATCCT 61.001 57.895 13.41 0.00 0.00 3.24
2957 3242 1.983119 TTGCCATGGTCCGGATCCTC 61.983 60.000 13.41 0.00 0.00 3.71
2958 3243 2.143419 GCCATGGTCCGGATCCTCT 61.143 63.158 13.41 2.97 0.00 3.69
2959 3244 1.700042 GCCATGGTCCGGATCCTCTT 61.700 60.000 13.41 0.77 0.00 2.85
2960 3245 0.394565 CCATGGTCCGGATCCTCTTC 59.605 60.000 13.41 0.00 0.00 2.87
2961 3246 1.123077 CATGGTCCGGATCCTCTTCA 58.877 55.000 13.41 3.77 0.00 3.02
2962 3247 1.486310 CATGGTCCGGATCCTCTTCAA 59.514 52.381 13.41 0.00 0.00 2.69
2963 3248 1.879575 TGGTCCGGATCCTCTTCAAT 58.120 50.000 13.41 0.00 0.00 2.57
2964 3249 1.486310 TGGTCCGGATCCTCTTCAATG 59.514 52.381 13.41 0.00 0.00 2.82
2965 3250 1.486726 GGTCCGGATCCTCTTCAATGT 59.513 52.381 7.81 0.00 0.00 2.71
2966 3251 2.483889 GGTCCGGATCCTCTTCAATGTC 60.484 54.545 7.81 0.00 0.00 3.06
2967 3252 1.762957 TCCGGATCCTCTTCAATGTCC 59.237 52.381 10.75 0.00 0.00 4.02
2968 3253 1.539065 CCGGATCCTCTTCAATGTCCG 60.539 57.143 10.75 4.74 45.93 4.79
2969 3254 1.137086 CGGATCCTCTTCAATGTCCGT 59.863 52.381 10.75 0.00 42.54 4.69
2970 3255 2.418746 CGGATCCTCTTCAATGTCCGTT 60.419 50.000 10.75 0.00 42.54 4.44
2971 3256 3.610911 GGATCCTCTTCAATGTCCGTTT 58.389 45.455 3.84 0.00 0.00 3.60
2972 3257 4.679639 CGGATCCTCTTCAATGTCCGTTTA 60.680 45.833 10.75 0.00 42.54 2.01
2973 3258 5.183228 GGATCCTCTTCAATGTCCGTTTAA 58.817 41.667 3.84 0.00 0.00 1.52
2974 3259 5.064834 GGATCCTCTTCAATGTCCGTTTAAC 59.935 44.000 3.84 0.00 0.00 2.01
2975 3260 5.223449 TCCTCTTCAATGTCCGTTTAACT 57.777 39.130 0.00 0.00 0.00 2.24
2976 3261 4.994852 TCCTCTTCAATGTCCGTTTAACTG 59.005 41.667 0.00 0.00 0.00 3.16
2977 3262 4.378459 CCTCTTCAATGTCCGTTTAACTGC 60.378 45.833 0.00 0.00 0.00 4.40
2978 3263 4.130857 TCTTCAATGTCCGTTTAACTGCA 58.869 39.130 0.00 0.00 0.00 4.41
2979 3264 4.213270 TCTTCAATGTCCGTTTAACTGCAG 59.787 41.667 13.48 13.48 0.00 4.41
2980 3265 3.472652 TCAATGTCCGTTTAACTGCAGT 58.527 40.909 15.25 15.25 0.00 4.40
2981 3266 3.880490 TCAATGTCCGTTTAACTGCAGTT 59.120 39.130 32.97 32.97 41.73 3.16
2982 3267 3.896648 ATGTCCGTTTAACTGCAGTTG 57.103 42.857 36.50 22.02 38.90 3.16
2983 3268 1.332375 TGTCCGTTTAACTGCAGTTGC 59.668 47.619 36.50 25.04 38.90 4.17
2984 3269 0.948678 TCCGTTTAACTGCAGTTGCC 59.051 50.000 36.50 23.36 41.18 4.52
2985 3270 0.665835 CCGTTTAACTGCAGTTGCCA 59.334 50.000 36.50 18.43 41.18 4.92
2986 3271 1.269448 CCGTTTAACTGCAGTTGCCAT 59.731 47.619 36.50 17.03 41.18 4.40
2987 3272 2.318578 CGTTTAACTGCAGTTGCCATG 58.681 47.619 36.50 22.27 41.18 3.66
2988 3273 2.287547 CGTTTAACTGCAGTTGCCATGT 60.288 45.455 36.50 15.57 41.18 3.21
2989 3274 3.308530 GTTTAACTGCAGTTGCCATGTC 58.691 45.455 36.50 17.80 41.18 3.06
2990 3275 1.155889 TAACTGCAGTTGCCATGTCG 58.844 50.000 36.50 0.67 41.18 4.35
2991 3276 2.133742 AACTGCAGTTGCCATGTCGC 62.134 55.000 30.66 0.00 41.18 5.19
2992 3277 2.281692 TGCAGTTGCCATGTCGCT 60.282 55.556 1.06 0.00 41.18 4.93
2993 3278 2.177531 GCAGTTGCCATGTCGCTG 59.822 61.111 0.00 0.00 34.31 5.18
2994 3279 2.327343 GCAGTTGCCATGTCGCTGA 61.327 57.895 2.90 0.00 34.31 4.26
2995 3280 1.855213 GCAGTTGCCATGTCGCTGAA 61.855 55.000 2.90 0.00 34.31 3.02
2996 3281 0.110056 CAGTTGCCATGTCGCTGAAC 60.110 55.000 0.00 0.00 0.00 3.18
2997 3282 0.250467 AGTTGCCATGTCGCTGAACT 60.250 50.000 0.00 0.00 0.00 3.01
2998 3283 1.001974 AGTTGCCATGTCGCTGAACTA 59.998 47.619 0.00 0.00 0.00 2.24
2999 3284 1.128692 GTTGCCATGTCGCTGAACTAC 59.871 52.381 0.00 0.00 0.00 2.73
3000 3285 0.320050 TGCCATGTCGCTGAACTACA 59.680 50.000 0.00 0.00 0.00 2.74
3011 3296 2.783135 CTGAACTACAGTTGCCATGGT 58.217 47.619 14.67 0.00 41.30 3.55
3012 3297 3.149196 CTGAACTACAGTTGCCATGGTT 58.851 45.455 14.67 0.00 41.30 3.67
3013 3298 2.884012 TGAACTACAGTTGCCATGGTTG 59.116 45.455 14.67 9.58 38.56 3.77
3014 3299 1.247567 ACTACAGTTGCCATGGTTGC 58.752 50.000 14.67 3.52 0.00 4.17
3015 3300 1.202927 ACTACAGTTGCCATGGTTGCT 60.203 47.619 14.67 5.95 0.00 3.91
3016 3301 1.470098 CTACAGTTGCCATGGTTGCTC 59.530 52.381 14.67 0.00 0.00 4.26
3017 3302 0.467844 ACAGTTGCCATGGTTGCTCA 60.468 50.000 14.67 0.00 0.00 4.26
3018 3303 0.675083 CAGTTGCCATGGTTGCTCAA 59.325 50.000 14.67 5.59 0.00 3.02
3019 3304 0.675633 AGTTGCCATGGTTGCTCAAC 59.324 50.000 19.02 19.02 40.45 3.18
3020 3305 0.675633 GTTGCCATGGTTGCTCAACT 59.324 50.000 19.25 0.00 40.94 3.16
3021 3306 0.675083 TTGCCATGGTTGCTCAACTG 59.325 50.000 14.67 4.33 40.94 3.16
3022 3307 1.080298 GCCATGGTTGCTCAACTGC 60.080 57.895 14.67 6.92 40.94 4.40
3023 3308 1.808531 GCCATGGTTGCTCAACTGCA 61.809 55.000 14.67 3.93 40.94 4.41
3024 3309 0.242825 CCATGGTTGCTCAACTGCAG 59.757 55.000 13.48 13.48 44.27 4.41
3025 3310 0.956633 CATGGTTGCTCAACTGCAGT 59.043 50.000 15.25 15.25 44.27 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.270412 TGTGTGGCCGTAAGTAACTGG 60.270 52.381 0.00 0.00 0.00 4.00
3 4 2.690786 TGATGTGTGGCCGTAAGTAAC 58.309 47.619 0.00 0.00 0.00 2.50
4 5 3.620427 ATGATGTGTGGCCGTAAGTAA 57.380 42.857 0.00 0.00 0.00 2.24
5 6 3.055747 TGAATGATGTGTGGCCGTAAGTA 60.056 43.478 0.00 0.00 0.00 2.24
6 7 2.290008 TGAATGATGTGTGGCCGTAAGT 60.290 45.455 0.00 0.00 0.00 2.24
7 8 2.352651 CTGAATGATGTGTGGCCGTAAG 59.647 50.000 0.00 0.00 0.00 2.34
8 9 2.290008 ACTGAATGATGTGTGGCCGTAA 60.290 45.455 0.00 0.00 0.00 3.18
9 10 1.277842 ACTGAATGATGTGTGGCCGTA 59.722 47.619 0.00 0.00 0.00 4.02
10 11 0.036732 ACTGAATGATGTGTGGCCGT 59.963 50.000 0.00 0.00 0.00 5.68
11 12 1.167851 AACTGAATGATGTGTGGCCG 58.832 50.000 0.00 0.00 0.00 6.13
12 13 2.557924 TGAAACTGAATGATGTGTGGCC 59.442 45.455 0.00 0.00 0.00 5.36
13 14 3.254166 ACTGAAACTGAATGATGTGTGGC 59.746 43.478 0.00 0.00 0.00 5.01
14 15 6.748333 ATACTGAAACTGAATGATGTGTGG 57.252 37.500 0.00 0.00 0.00 4.17
15 16 8.598924 GTCTATACTGAAACTGAATGATGTGTG 58.401 37.037 0.00 0.00 0.00 3.82
16 17 8.314021 TGTCTATACTGAAACTGAATGATGTGT 58.686 33.333 0.00 0.00 0.00 3.72
17 18 8.707938 TGTCTATACTGAAACTGAATGATGTG 57.292 34.615 0.00 0.00 0.00 3.21
18 19 9.896645 AATGTCTATACTGAAACTGAATGATGT 57.103 29.630 0.00 0.00 0.00 3.06
20 21 9.896645 ACAATGTCTATACTGAAACTGAATGAT 57.103 29.630 0.00 0.00 0.00 2.45
21 22 9.154847 CACAATGTCTATACTGAAACTGAATGA 57.845 33.333 0.00 0.00 0.00 2.57
22 23 7.907045 GCACAATGTCTATACTGAAACTGAATG 59.093 37.037 0.00 0.00 0.00 2.67
23 24 7.607607 TGCACAATGTCTATACTGAAACTGAAT 59.392 33.333 0.00 0.00 0.00 2.57
24 25 6.934083 TGCACAATGTCTATACTGAAACTGAA 59.066 34.615 0.00 0.00 0.00 3.02
25 26 6.463360 TGCACAATGTCTATACTGAAACTGA 58.537 36.000 0.00 0.00 0.00 3.41
26 27 6.726258 TGCACAATGTCTATACTGAAACTG 57.274 37.500 0.00 0.00 0.00 3.16
27 28 7.928307 ATTGCACAATGTCTATACTGAAACT 57.072 32.000 0.00 0.00 0.00 2.66
28 29 8.970691 AAATTGCACAATGTCTATACTGAAAC 57.029 30.769 0.00 0.00 0.00 2.78
30 31 9.448438 ACTAAATTGCACAATGTCTATACTGAA 57.552 29.630 0.00 0.00 0.00 3.02
35 36 9.542462 GGAGTACTAAATTGCACAATGTCTATA 57.458 33.333 0.00 0.00 0.00 1.31
36 37 7.499232 GGGAGTACTAAATTGCACAATGTCTAT 59.501 37.037 0.00 0.00 0.00 1.98
37 38 6.821665 GGGAGTACTAAATTGCACAATGTCTA 59.178 38.462 0.00 0.00 0.00 2.59
38 39 5.648092 GGGAGTACTAAATTGCACAATGTCT 59.352 40.000 0.00 0.00 0.00 3.41
39 40 5.648092 AGGGAGTACTAAATTGCACAATGTC 59.352 40.000 0.00 0.00 0.00 3.06
40 41 5.570320 AGGGAGTACTAAATTGCACAATGT 58.430 37.500 0.00 0.00 0.00 2.71
41 42 5.066505 GGAGGGAGTACTAAATTGCACAATG 59.933 44.000 0.00 0.00 0.00 2.82
42 43 5.193679 GGAGGGAGTACTAAATTGCACAAT 58.806 41.667 0.00 0.00 0.00 2.71
43 44 4.585879 GGAGGGAGTACTAAATTGCACAA 58.414 43.478 0.00 0.00 0.00 3.33
44 45 3.369052 CGGAGGGAGTACTAAATTGCACA 60.369 47.826 0.00 0.00 0.00 4.57
45 46 3.195661 CGGAGGGAGTACTAAATTGCAC 58.804 50.000 0.00 0.00 0.00 4.57
46 47 2.835764 ACGGAGGGAGTACTAAATTGCA 59.164 45.455 0.00 0.00 0.00 4.08
47 48 3.455327 GACGGAGGGAGTACTAAATTGC 58.545 50.000 0.00 0.00 0.00 3.56
48 49 3.181468 GGGACGGAGGGAGTACTAAATTG 60.181 52.174 0.00 0.00 0.00 2.32
49 50 3.036819 GGGACGGAGGGAGTACTAAATT 58.963 50.000 0.00 0.00 0.00 1.82
50 51 2.023695 TGGGACGGAGGGAGTACTAAAT 60.024 50.000 0.00 0.00 0.00 1.40
51 52 1.358787 TGGGACGGAGGGAGTACTAAA 59.641 52.381 0.00 0.00 0.00 1.85
52 53 1.002069 TGGGACGGAGGGAGTACTAA 58.998 55.000 0.00 0.00 0.00 2.24
53 54 1.002069 TTGGGACGGAGGGAGTACTA 58.998 55.000 0.00 0.00 0.00 1.82
54 55 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
55 56 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
56 57 1.557832 CATTTTGGGACGGAGGGAGTA 59.442 52.381 0.00 0.00 0.00 2.59
57 58 0.328258 CATTTTGGGACGGAGGGAGT 59.672 55.000 0.00 0.00 0.00 3.85
58 59 0.328258 ACATTTTGGGACGGAGGGAG 59.672 55.000 0.00 0.00 0.00 4.30
59 60 1.659022 TACATTTTGGGACGGAGGGA 58.341 50.000 0.00 0.00 0.00 4.20
60 61 2.026636 TCTTACATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
61 62 3.007635 GTCTTACATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
62 63 2.671396 CGTCTTACATTTTGGGACGGAG 59.329 50.000 0.00 0.00 43.69 4.63
63 64 2.690786 CGTCTTACATTTTGGGACGGA 58.309 47.619 0.00 0.00 43.69 4.69
65 66 2.419667 ACCGTCTTACATTTTGGGACG 58.580 47.619 0.00 0.00 45.92 4.79
66 67 4.841443 AAACCGTCTTACATTTTGGGAC 57.159 40.909 0.00 0.00 0.00 4.46
67 68 5.360144 TCAAAAACCGTCTTACATTTTGGGA 59.640 36.000 8.80 0.00 39.94 4.37
68 69 5.460748 GTCAAAAACCGTCTTACATTTTGGG 59.539 40.000 8.80 0.00 39.94 4.12
69 70 6.020201 GTGTCAAAAACCGTCTTACATTTTGG 60.020 38.462 8.80 0.00 39.94 3.28
70 71 6.750039 AGTGTCAAAAACCGTCTTACATTTTG 59.250 34.615 0.00 0.00 40.53 2.44
71 72 6.859017 AGTGTCAAAAACCGTCTTACATTTT 58.141 32.000 0.00 0.00 0.00 1.82
72 73 6.445357 AGTGTCAAAAACCGTCTTACATTT 57.555 33.333 0.00 0.00 0.00 2.32
73 74 7.442969 TGATAGTGTCAAAAACCGTCTTACATT 59.557 33.333 0.00 0.00 32.78 2.71
74 75 6.932400 TGATAGTGTCAAAAACCGTCTTACAT 59.068 34.615 0.00 0.00 32.78 2.29
75 76 6.282167 TGATAGTGTCAAAAACCGTCTTACA 58.718 36.000 0.00 0.00 32.78 2.41
76 77 6.774354 TGATAGTGTCAAAAACCGTCTTAC 57.226 37.500 0.00 0.00 32.78 2.34
77 78 8.308931 ACTATGATAGTGTCAAAAACCGTCTTA 58.691 33.333 3.96 0.00 40.97 2.10
78 79 7.159372 ACTATGATAGTGTCAAAAACCGTCTT 58.841 34.615 3.96 0.00 40.97 3.01
79 80 6.698380 ACTATGATAGTGTCAAAAACCGTCT 58.302 36.000 3.96 0.00 40.97 4.18
80 81 6.963049 ACTATGATAGTGTCAAAAACCGTC 57.037 37.500 3.96 0.00 40.97 4.79
81 82 8.644318 GATACTATGATAGTGTCAAAAACCGT 57.356 34.615 20.18 0.00 43.73 4.83
110 111 7.972301 TCCATCCCAAAATGTAAGATGTTTTT 58.028 30.769 0.00 0.00 33.95 1.94
111 112 7.310609 CCTCCATCCCAAAATGTAAGATGTTTT 60.311 37.037 0.00 0.00 33.95 2.43
112 113 6.155049 CCTCCATCCCAAAATGTAAGATGTTT 59.845 38.462 0.00 0.00 33.95 2.83
113 114 5.658190 CCTCCATCCCAAAATGTAAGATGTT 59.342 40.000 0.00 0.00 33.95 2.71
114 115 5.203528 CCTCCATCCCAAAATGTAAGATGT 58.796 41.667 0.00 0.00 33.95 3.06
115 116 4.586001 CCCTCCATCCCAAAATGTAAGATG 59.414 45.833 0.00 0.00 35.24 2.90
116 117 4.482025 TCCCTCCATCCCAAAATGTAAGAT 59.518 41.667 0.00 0.00 0.00 2.40
117 118 3.855599 TCCCTCCATCCCAAAATGTAAGA 59.144 43.478 0.00 0.00 0.00 2.10
118 119 4.210331 CTCCCTCCATCCCAAAATGTAAG 58.790 47.826 0.00 0.00 0.00 2.34
119 120 3.596046 ACTCCCTCCATCCCAAAATGTAA 59.404 43.478 0.00 0.00 0.00 2.41
120 121 3.197983 ACTCCCTCCATCCCAAAATGTA 58.802 45.455 0.00 0.00 0.00 2.29
121 122 2.003072 ACTCCCTCCATCCCAAAATGT 58.997 47.619 0.00 0.00 0.00 2.71
122 123 2.834638 ACTCCCTCCATCCCAAAATG 57.165 50.000 0.00 0.00 0.00 2.32
123 124 4.965283 TTTACTCCCTCCATCCCAAAAT 57.035 40.909 0.00 0.00 0.00 1.82
124 125 4.107311 AGTTTTACTCCCTCCATCCCAAAA 59.893 41.667 0.00 0.00 0.00 2.44
125 126 3.660669 AGTTTTACTCCCTCCATCCCAAA 59.339 43.478 0.00 0.00 0.00 3.28
126 127 3.265489 AGTTTTACTCCCTCCATCCCAA 58.735 45.455 0.00 0.00 0.00 4.12
127 128 2.929301 AGTTTTACTCCCTCCATCCCA 58.071 47.619 0.00 0.00 0.00 4.37
128 129 5.045066 AGTTAAGTTTTACTCCCTCCATCCC 60.045 44.000 0.00 0.00 0.00 3.85
129 130 5.880887 CAGTTAAGTTTTACTCCCTCCATCC 59.119 44.000 0.00 0.00 0.00 3.51
130 131 5.354513 GCAGTTAAGTTTTACTCCCTCCATC 59.645 44.000 0.00 0.00 0.00 3.51
131 132 5.222048 TGCAGTTAAGTTTTACTCCCTCCAT 60.222 40.000 0.00 0.00 0.00 3.41
132 133 4.103469 TGCAGTTAAGTTTTACTCCCTCCA 59.897 41.667 0.00 0.00 0.00 3.86
133 134 4.648651 TGCAGTTAAGTTTTACTCCCTCC 58.351 43.478 0.00 0.00 0.00 4.30
134 135 6.819397 ATTGCAGTTAAGTTTTACTCCCTC 57.181 37.500 0.00 0.00 0.00 4.30
135 136 7.505923 AGAAATTGCAGTTAAGTTTTACTCCCT 59.494 33.333 0.00 0.00 0.00 4.20
136 137 7.658261 AGAAATTGCAGTTAAGTTTTACTCCC 58.342 34.615 0.00 0.00 0.00 4.30
137 138 9.827411 CTAGAAATTGCAGTTAAGTTTTACTCC 57.173 33.333 0.00 0.00 0.00 3.85
192 193 4.405358 GCCAATTATCCTCATTTTGACCCA 59.595 41.667 0.00 0.00 0.00 4.51
241 242 9.962783 GCTAGAAATTGCTATTGAATCTCAATT 57.037 29.630 7.16 10.02 44.03 2.32
295 297 8.894768 AAGCTTAATGATAATACTGGACAGAC 57.105 34.615 6.29 0.00 0.00 3.51
404 406 8.671921 TCTAATTCAGAGCTGATTTCATTTCAC 58.328 33.333 10.00 0.00 39.64 3.18
423 425 8.409371 TGATCTCCGATAGCATACATCTAATTC 58.591 37.037 0.00 0.00 0.00 2.17
424 426 8.194104 GTGATCTCCGATAGCATACATCTAATT 58.806 37.037 0.00 0.00 0.00 1.40
425 427 7.340487 TGTGATCTCCGATAGCATACATCTAAT 59.660 37.037 0.00 0.00 0.00 1.73
426 428 6.659242 TGTGATCTCCGATAGCATACATCTAA 59.341 38.462 0.00 0.00 0.00 2.10
494 496 9.643693 CATACTTGCATAGTTTCAAGGAAAAAT 57.356 29.630 6.82 0.00 42.82 1.82
542 546 8.768955 CATAGAGTAAGGTATGAAGTTGCAATC 58.231 37.037 0.59 0.00 0.00 2.67
585 589 8.618702 AGGATCAAATCTCATACATGATTGTC 57.381 34.615 0.00 0.00 37.28 3.18
594 598 8.618702 ATGTGATGAAGGATCAAATCTCATAC 57.381 34.615 0.00 0.00 42.96 2.39
607 611 5.707298 GGTGAGAAGAAAATGTGATGAAGGA 59.293 40.000 0.00 0.00 0.00 3.36
654 658 8.156994 TGGTACTCTTTTGTTGGTACATTTAC 57.843 34.615 0.00 0.00 39.30 2.01
823 1056 3.477530 GGAAACAAGCTTCTGTACCAGT 58.522 45.455 0.00 0.00 32.61 4.00
892 1125 8.525290 ACATATTCCATTTGAAGGTTTCTAGG 57.475 34.615 0.00 0.00 36.14 3.02
951 1184 0.687427 AGTGTGGTTTGCTGGGCTTT 60.687 50.000 0.00 0.00 0.00 3.51
952 1185 0.687427 AAGTGTGGTTTGCTGGGCTT 60.687 50.000 0.00 0.00 0.00 4.35
953 1186 1.076044 AAGTGTGGTTTGCTGGGCT 60.076 52.632 0.00 0.00 0.00 5.19
954 1187 1.363807 GAAGTGTGGTTTGCTGGGC 59.636 57.895 0.00 0.00 0.00 5.36
955 1188 1.463553 GGGAAGTGTGGTTTGCTGGG 61.464 60.000 0.00 0.00 0.00 4.45
956 1189 0.754957 TGGGAAGTGTGGTTTGCTGG 60.755 55.000 0.00 0.00 0.00 4.85
957 1190 1.110442 TTGGGAAGTGTGGTTTGCTG 58.890 50.000 0.00 0.00 0.00 4.41
958 1191 1.688197 CATTGGGAAGTGTGGTTTGCT 59.312 47.619 0.00 0.00 0.00 3.91
959 1192 1.686052 TCATTGGGAAGTGTGGTTTGC 59.314 47.619 0.00 0.00 0.00 3.68
960 1193 4.399004 TTTCATTGGGAAGTGTGGTTTG 57.601 40.909 0.00 0.00 36.72 2.93
961 1194 4.141733 CCTTTTCATTGGGAAGTGTGGTTT 60.142 41.667 0.00 0.00 36.72 3.27
996 1240 6.595682 CCATACACCTTTCAAGTCCATCTAT 58.404 40.000 0.00 0.00 0.00 1.98
997 1241 5.629133 GCCATACACCTTTCAAGTCCATCTA 60.629 44.000 0.00 0.00 0.00 1.98
1014 1258 0.106569 CCTCCATTGCCTGCCATACA 60.107 55.000 0.00 0.00 0.00 2.29
1268 1513 7.942341 AGAACAATGACAACAATTTAGGGTAGA 59.058 33.333 0.00 0.00 0.00 2.59
1284 1529 4.082081 TCCCATGCATCAAAGAACAATGAC 60.082 41.667 0.00 0.00 0.00 3.06
1438 1683 4.237724 TCAGAATTTCAGACTGTAGCACG 58.762 43.478 1.59 0.00 33.93 5.34
1489 1734 6.336566 AGCGATGATTAATACCTGAGCTATG 58.663 40.000 0.00 0.00 0.00 2.23
1490 1735 6.537453 AGCGATGATTAATACCTGAGCTAT 57.463 37.500 0.00 0.00 0.00 2.97
1615 1860 9.665719 TTCACATTCTGCACTTATTAGTTCATA 57.334 29.630 0.00 0.00 30.26 2.15
1678 1924 1.131883 GCGATTGACTCAGCATTGCTT 59.868 47.619 8.83 0.00 36.40 3.91
1679 1925 0.731417 GCGATTGACTCAGCATTGCT 59.269 50.000 5.03 5.03 40.77 3.91
1685 1931 0.390340 TCAGGTGCGATTGACTCAGC 60.390 55.000 0.00 0.00 32.74 4.26
1686 1932 2.084610 TTCAGGTGCGATTGACTCAG 57.915 50.000 0.00 0.00 0.00 3.35
1687 1933 2.289631 ACATTCAGGTGCGATTGACTCA 60.290 45.455 0.00 0.00 0.00 3.41
1688 1934 2.350522 ACATTCAGGTGCGATTGACTC 58.649 47.619 0.00 0.00 0.00 3.36
1700 1946 2.872245 CCCATACGCTGTAACATTCAGG 59.128 50.000 0.00 0.00 33.98 3.86
1703 1949 2.870411 GGACCCATACGCTGTAACATTC 59.130 50.000 0.00 0.00 0.00 2.67
1724 1970 4.202357 TGCTTACTGTAATGCCATAGAGGG 60.202 45.833 14.82 0.00 38.09 4.30
1727 1973 7.695480 TTTTTGCTTACTGTAATGCCATAGA 57.305 32.000 14.82 0.23 0.00 1.98
1751 1997 4.060900 CACTGCTAATATCGAGGTGCAAT 58.939 43.478 0.00 0.00 0.00 3.56
1761 2007 5.049129 GGGAGTCAATTGCACTGCTAATATC 60.049 44.000 20.33 7.16 32.98 1.63
1926 2172 3.448686 CTTCTTGTACTGCGGTATCTGG 58.551 50.000 9.01 0.62 0.00 3.86
1928 2174 3.097614 ACCTTCTTGTACTGCGGTATCT 58.902 45.455 9.01 0.00 0.00 1.98
2001 2247 3.945285 ACGTTTCAACAACATCAACCTCT 59.055 39.130 0.00 0.00 0.00 3.69
2132 2395 4.534797 CAGGTAGGTTACAGGTAGTAGCT 58.465 47.826 0.00 0.00 34.66 3.32
2214 2485 2.632544 CGACTGACGGCTACCCACA 61.633 63.158 0.00 0.00 38.46 4.17
2266 2537 0.950836 CAACCGAAGATGTTGTGGCA 59.049 50.000 0.00 0.00 0.00 4.92
2317 2588 4.666412 TCTTCCTGGAGAGAAGAGAAGA 57.334 45.455 0.00 0.00 43.65 2.87
2352 2626 5.348997 AGTCTTTCTTTCTTCCTTATTCGCG 59.651 40.000 0.00 0.00 0.00 5.87
2353 2627 6.729391 AGTCTTTCTTTCTTCCTTATTCGC 57.271 37.500 0.00 0.00 0.00 4.70
2358 2634 7.304497 AGTGCTAGTCTTTCTTTCTTCCTTA 57.696 36.000 0.00 0.00 0.00 2.69
2381 2657 4.735822 CGTCGATTTTCTAGGAGCAACTAG 59.264 45.833 8.05 8.05 41.41 2.57
2382 2658 4.397103 TCGTCGATTTTCTAGGAGCAACTA 59.603 41.667 0.00 0.00 0.00 2.24
2418 2694 3.056179 GCAGGAGCCTTCTACTATCCATC 60.056 52.174 0.00 0.00 30.56 3.51
2440 2716 2.270986 GGCTTGCCTGTGGGACAAG 61.271 63.158 4.11 11.78 44.16 3.16
2560 2836 6.878923 CCAGTTCTTCCTCACACATATACAAA 59.121 38.462 0.00 0.00 0.00 2.83
2562 2838 5.104941 CCCAGTTCTTCCTCACACATATACA 60.105 44.000 0.00 0.00 0.00 2.29
2563 2839 5.360591 CCCAGTTCTTCCTCACACATATAC 58.639 45.833 0.00 0.00 0.00 1.47
2564 2840 4.141711 GCCCAGTTCTTCCTCACACATATA 60.142 45.833 0.00 0.00 0.00 0.86
2565 2841 3.370953 GCCCAGTTCTTCCTCACACATAT 60.371 47.826 0.00 0.00 0.00 1.78
2566 2842 2.027192 GCCCAGTTCTTCCTCACACATA 60.027 50.000 0.00 0.00 0.00 2.29
2567 2843 1.271597 GCCCAGTTCTTCCTCACACAT 60.272 52.381 0.00 0.00 0.00 3.21
2590 2875 7.208080 TCCGCCATACTTTCTTAGTAATTCTC 58.792 38.462 0.00 0.00 42.45 2.87
2601 2886 1.822990 TCGTTCTCCGCCATACTTTCT 59.177 47.619 0.00 0.00 36.19 2.52
2623 2908 6.074249 GCTAGACAATTTCTCTTACCATACGC 60.074 42.308 0.00 0.00 35.55 4.42
2625 2910 7.982354 AGTGCTAGACAATTTCTCTTACCATAC 59.018 37.037 0.00 0.00 35.55 2.39
2633 2918 7.201785 GCTAGAGTAGTGCTAGACAATTTCTCT 60.202 40.741 16.70 16.70 38.74 3.10
2634 2919 6.915843 GCTAGAGTAGTGCTAGACAATTTCTC 59.084 42.308 0.00 3.37 38.03 2.87
2649 2934 3.445805 GGACAAAGCTGAGCTAGAGTAGT 59.554 47.826 7.68 0.00 38.25 2.73
2650 2935 3.445450 TGGACAAAGCTGAGCTAGAGTAG 59.555 47.826 7.68 0.00 38.25 2.57
2651 2936 3.431415 TGGACAAAGCTGAGCTAGAGTA 58.569 45.455 7.68 0.00 38.25 2.59
2652 2937 2.251818 TGGACAAAGCTGAGCTAGAGT 58.748 47.619 7.68 6.73 38.25 3.24
2653 2938 3.118847 TCATGGACAAAGCTGAGCTAGAG 60.119 47.826 7.68 3.03 38.25 2.43
2654 2939 2.833943 TCATGGACAAAGCTGAGCTAGA 59.166 45.455 7.68 0.00 38.25 2.43
2655 2940 3.257469 TCATGGACAAAGCTGAGCTAG 57.743 47.619 7.68 6.31 38.25 3.42
2656 2941 3.453717 AGATCATGGACAAAGCTGAGCTA 59.546 43.478 7.68 0.00 38.25 3.32
2657 2942 2.239150 AGATCATGGACAAAGCTGAGCT 59.761 45.455 0.00 0.00 42.56 4.09
2658 2943 2.641305 AGATCATGGACAAAGCTGAGC 58.359 47.619 0.00 0.00 0.00 4.26
2659 2944 4.515361 AGAAGATCATGGACAAAGCTGAG 58.485 43.478 0.00 0.00 0.00 3.35
2660 2945 4.564782 AGAAGATCATGGACAAAGCTGA 57.435 40.909 0.00 0.00 0.00 4.26
2661 2946 6.748333 TTTAGAAGATCATGGACAAAGCTG 57.252 37.500 0.00 0.00 0.00 4.24
2662 2947 7.765695 TTTTTAGAAGATCATGGACAAAGCT 57.234 32.000 0.00 0.00 0.00 3.74
2684 2969 4.759693 TGTGGCAGTTATCGTCATCTTTTT 59.240 37.500 0.00 0.00 0.00 1.94
2685 2970 4.323417 TGTGGCAGTTATCGTCATCTTTT 58.677 39.130 0.00 0.00 0.00 2.27
2686 2971 3.937814 TGTGGCAGTTATCGTCATCTTT 58.062 40.909 0.00 0.00 0.00 2.52
2687 2972 3.610040 TGTGGCAGTTATCGTCATCTT 57.390 42.857 0.00 0.00 0.00 2.40
2688 2973 3.461061 CATGTGGCAGTTATCGTCATCT 58.539 45.455 0.00 0.00 0.00 2.90
2689 2974 2.032549 GCATGTGGCAGTTATCGTCATC 60.033 50.000 0.00 0.00 43.97 2.92
2690 2975 1.942657 GCATGTGGCAGTTATCGTCAT 59.057 47.619 0.00 0.00 43.97 3.06
2691 2976 1.368641 GCATGTGGCAGTTATCGTCA 58.631 50.000 0.00 0.00 43.97 4.35
2692 2977 0.301687 CGCATGTGGCAGTTATCGTC 59.698 55.000 0.00 0.00 45.17 4.20
2693 2978 0.391130 ACGCATGTGGCAGTTATCGT 60.391 50.000 11.65 0.00 45.17 3.73
2694 2979 0.026674 CACGCATGTGGCAGTTATCG 59.973 55.000 11.65 0.00 45.17 2.92
2695 2980 3.903876 CACGCATGTGGCAGTTATC 57.096 52.632 11.65 0.00 45.17 1.75
2704 2989 0.521291 CCTTAACACCCACGCATGTG 59.479 55.000 4.30 4.30 46.00 3.21
2705 2990 0.608035 CCCTTAACACCCACGCATGT 60.608 55.000 0.00 0.00 0.00 3.21
2706 2991 0.322098 TCCCTTAACACCCACGCATG 60.322 55.000 0.00 0.00 0.00 4.06
2707 2992 0.623723 ATCCCTTAACACCCACGCAT 59.376 50.000 0.00 0.00 0.00 4.73
2708 2993 0.402504 AATCCCTTAACACCCACGCA 59.597 50.000 0.00 0.00 0.00 5.24
2709 2994 1.201414 CAAATCCCTTAACACCCACGC 59.799 52.381 0.00 0.00 0.00 5.34
2710 2995 2.510613 ACAAATCCCTTAACACCCACG 58.489 47.619 0.00 0.00 0.00 4.94
2711 2996 3.892588 TGAACAAATCCCTTAACACCCAC 59.107 43.478 0.00 0.00 0.00 4.61
2712 2997 3.892588 GTGAACAAATCCCTTAACACCCA 59.107 43.478 0.00 0.00 0.00 4.51
2713 2998 3.892588 TGTGAACAAATCCCTTAACACCC 59.107 43.478 0.00 0.00 0.00 4.61
2714 2999 5.010617 ACATGTGAACAAATCCCTTAACACC 59.989 40.000 0.00 0.00 0.00 4.16
2715 3000 6.084326 ACATGTGAACAAATCCCTTAACAC 57.916 37.500 0.00 0.00 0.00 3.32
2716 3001 6.723298 AACATGTGAACAAATCCCTTAACA 57.277 33.333 0.00 0.00 0.00 2.41
2717 3002 7.494298 ACAAAACATGTGAACAAATCCCTTAAC 59.506 33.333 0.00 0.00 41.93 2.01
2718 3003 7.560368 ACAAAACATGTGAACAAATCCCTTAA 58.440 30.769 0.00 0.00 41.93 1.85
2719 3004 7.118496 ACAAAACATGTGAACAAATCCCTTA 57.882 32.000 0.00 0.00 41.93 2.69
2720 3005 5.988287 ACAAAACATGTGAACAAATCCCTT 58.012 33.333 0.00 0.00 41.93 3.95
2721 3006 5.612725 ACAAAACATGTGAACAAATCCCT 57.387 34.783 0.00 0.00 41.93 4.20
2733 3018 6.205464 CCTCTTAGACATCACACAAAACATGT 59.795 38.462 0.00 0.00 45.34 3.21
2734 3019 6.427853 TCCTCTTAGACATCACACAAAACATG 59.572 38.462 0.00 0.00 0.00 3.21
2735 3020 6.428159 GTCCTCTTAGACATCACACAAAACAT 59.572 38.462 0.00 0.00 36.73 2.71
2736 3021 5.758296 GTCCTCTTAGACATCACACAAAACA 59.242 40.000 0.00 0.00 36.73 2.83
2737 3022 5.992217 AGTCCTCTTAGACATCACACAAAAC 59.008 40.000 0.00 0.00 39.34 2.43
2738 3023 6.174720 AGTCCTCTTAGACATCACACAAAA 57.825 37.500 0.00 0.00 39.34 2.44
2739 3024 5.808366 AGTCCTCTTAGACATCACACAAA 57.192 39.130 0.00 0.00 39.34 2.83
2740 3025 6.295123 GGTTAGTCCTCTTAGACATCACACAA 60.295 42.308 0.00 0.00 39.34 3.33
2741 3026 5.185249 GGTTAGTCCTCTTAGACATCACACA 59.815 44.000 0.00 0.00 39.34 3.72
2742 3027 5.394333 GGGTTAGTCCTCTTAGACATCACAC 60.394 48.000 0.00 0.00 39.34 3.82
2743 3028 4.710375 GGGTTAGTCCTCTTAGACATCACA 59.290 45.833 0.00 0.00 39.34 3.58
2744 3029 4.710375 TGGGTTAGTCCTCTTAGACATCAC 59.290 45.833 0.00 0.00 39.34 3.06
2745 3030 4.710375 GTGGGTTAGTCCTCTTAGACATCA 59.290 45.833 0.00 0.00 39.34 3.07
2746 3031 4.710375 TGTGGGTTAGTCCTCTTAGACATC 59.290 45.833 0.00 0.00 39.34 3.06
2747 3032 4.466726 GTGTGGGTTAGTCCTCTTAGACAT 59.533 45.833 0.00 0.00 39.34 3.06
2748 3033 3.830755 GTGTGGGTTAGTCCTCTTAGACA 59.169 47.826 0.00 0.00 39.34 3.41
2749 3034 3.119566 CGTGTGGGTTAGTCCTCTTAGAC 60.120 52.174 0.00 0.00 37.01 2.59
2750 3035 3.087031 CGTGTGGGTTAGTCCTCTTAGA 58.913 50.000 0.00 0.00 36.25 2.10
2751 3036 2.824341 ACGTGTGGGTTAGTCCTCTTAG 59.176 50.000 0.00 0.00 36.25 2.18
2752 3037 2.880443 ACGTGTGGGTTAGTCCTCTTA 58.120 47.619 0.00 0.00 36.25 2.10
2753 3038 1.713297 ACGTGTGGGTTAGTCCTCTT 58.287 50.000 0.00 0.00 36.25 2.85
2754 3039 2.444421 CTACGTGTGGGTTAGTCCTCT 58.556 52.381 0.00 0.00 36.25 3.69
2755 3040 1.475682 CCTACGTGTGGGTTAGTCCTC 59.524 57.143 0.00 0.00 36.25 3.71
2756 3041 1.553706 CCTACGTGTGGGTTAGTCCT 58.446 55.000 0.00 0.00 36.25 3.85
2757 3042 0.108472 GCCTACGTGTGGGTTAGTCC 60.108 60.000 0.00 0.00 33.26 3.85
2758 3043 0.457337 CGCCTACGTGTGGGTTAGTC 60.457 60.000 0.00 0.00 33.26 2.59
2759 3044 1.588082 CGCCTACGTGTGGGTTAGT 59.412 57.895 0.00 0.00 33.26 2.24
2760 3045 4.489249 CGCCTACGTGTGGGTTAG 57.511 61.111 0.00 0.00 33.26 2.34
2771 3056 4.094294 TGATTGTTTTGCTCATACGCCTAC 59.906 41.667 0.00 0.00 0.00 3.18
2772 3057 4.257731 TGATTGTTTTGCTCATACGCCTA 58.742 39.130 0.00 0.00 0.00 3.93
2773 3058 3.081061 TGATTGTTTTGCTCATACGCCT 58.919 40.909 0.00 0.00 0.00 5.52
2774 3059 3.485947 TGATTGTTTTGCTCATACGCC 57.514 42.857 0.00 0.00 0.00 5.68
2775 3060 4.858692 ACATTGATTGTTTTGCTCATACGC 59.141 37.500 0.00 0.00 33.74 4.42
2776 3061 5.512788 GGACATTGATTGTTTTGCTCATACG 59.487 40.000 0.00 0.00 39.18 3.06
2777 3062 6.308766 GTGGACATTGATTGTTTTGCTCATAC 59.691 38.462 0.00 0.00 39.18 2.39
2778 3063 6.015603 TGTGGACATTGATTGTTTTGCTCATA 60.016 34.615 0.00 0.00 39.18 2.15
2779 3064 5.221481 TGTGGACATTGATTGTTTTGCTCAT 60.221 36.000 0.00 0.00 39.18 2.90
2780 3065 4.099113 TGTGGACATTGATTGTTTTGCTCA 59.901 37.500 0.00 0.00 39.18 4.26
2781 3066 4.445385 GTGTGGACATTGATTGTTTTGCTC 59.555 41.667 0.00 0.00 39.18 4.26
2782 3067 4.370917 GTGTGGACATTGATTGTTTTGCT 58.629 39.130 0.00 0.00 39.18 3.91
2783 3068 3.182173 CGTGTGGACATTGATTGTTTTGC 59.818 43.478 0.00 0.00 39.18 3.68
2784 3069 3.182173 GCGTGTGGACATTGATTGTTTTG 59.818 43.478 0.00 0.00 39.18 2.44
2785 3070 3.068024 AGCGTGTGGACATTGATTGTTTT 59.932 39.130 0.00 0.00 39.18 2.43
2786 3071 2.622942 AGCGTGTGGACATTGATTGTTT 59.377 40.909 0.00 0.00 39.18 2.83
2787 3072 2.229792 AGCGTGTGGACATTGATTGTT 58.770 42.857 0.00 0.00 39.18 2.83
2788 3073 1.896220 AGCGTGTGGACATTGATTGT 58.104 45.000 0.00 0.00 42.79 2.71
2789 3074 2.995466 AAGCGTGTGGACATTGATTG 57.005 45.000 0.00 0.00 0.00 2.67
2790 3075 4.320608 AAAAAGCGTGTGGACATTGATT 57.679 36.364 0.00 0.00 0.00 2.57
2817 3102 1.284982 CGTGTGAGAGGAACCGCAAG 61.285 60.000 0.00 0.00 0.00 4.01
2818 3103 1.300620 CGTGTGAGAGGAACCGCAA 60.301 57.895 0.00 0.00 0.00 4.85
2819 3104 2.338620 CGTGTGAGAGGAACCGCA 59.661 61.111 0.00 0.00 0.00 5.69
2820 3105 1.733399 GACGTGTGAGAGGAACCGC 60.733 63.158 0.00 0.00 0.00 5.68
2821 3106 1.135746 GTAGACGTGTGAGAGGAACCG 60.136 57.143 0.00 0.00 0.00 4.44
2822 3107 1.135746 CGTAGACGTGTGAGAGGAACC 60.136 57.143 0.00 0.00 34.11 3.62
2823 3108 2.244281 CGTAGACGTGTGAGAGGAAC 57.756 55.000 0.00 0.00 34.11 3.62
2835 3120 1.136085 CATTTTGCCCACACGTAGACG 60.136 52.381 0.00 0.00 46.33 4.18
2836 3121 1.401018 GCATTTTGCCCACACGTAGAC 60.401 52.381 0.00 0.00 37.42 2.59
2837 3122 0.878416 GCATTTTGCCCACACGTAGA 59.122 50.000 0.00 0.00 37.42 2.59
2838 3123 0.595588 TGCATTTTGCCCACACGTAG 59.404 50.000 0.00 0.00 44.23 3.51
2839 3124 1.252175 ATGCATTTTGCCCACACGTA 58.748 45.000 0.00 0.00 44.23 3.57
2840 3125 1.252175 TATGCATTTTGCCCACACGT 58.748 45.000 3.54 0.00 44.23 4.49
2841 3126 1.991965 GTTATGCATTTTGCCCACACG 59.008 47.619 3.54 0.00 44.23 4.49
2842 3127 1.991965 CGTTATGCATTTTGCCCACAC 59.008 47.619 3.54 0.00 44.23 3.82
2843 3128 1.671261 GCGTTATGCATTTTGCCCACA 60.671 47.619 3.54 0.00 44.23 4.17
2844 3129 0.998669 GCGTTATGCATTTTGCCCAC 59.001 50.000 3.54 0.00 44.23 4.61
2845 3130 0.457509 CGCGTTATGCATTTTGCCCA 60.458 50.000 3.54 0.00 44.23 5.36
2846 3131 1.751536 GCGCGTTATGCATTTTGCCC 61.752 55.000 3.54 0.00 44.23 5.36
2847 3132 1.075425 TGCGCGTTATGCATTTTGCC 61.075 50.000 3.54 1.93 44.23 4.52
2848 3133 0.023606 GTGCGCGTTATGCATTTTGC 59.976 50.000 3.54 5.55 46.97 3.68
2849 3134 1.334994 TGTGCGCGTTATGCATTTTG 58.665 45.000 3.54 0.00 46.97 2.44
2850 3135 1.919263 CATGTGCGCGTTATGCATTTT 59.081 42.857 3.54 0.00 46.97 1.82
2851 3136 1.132073 TCATGTGCGCGTTATGCATTT 59.868 42.857 3.54 0.00 46.97 2.32
2852 3137 0.731994 TCATGTGCGCGTTATGCATT 59.268 45.000 3.54 0.00 46.97 3.56
2853 3138 0.027979 GTCATGTGCGCGTTATGCAT 59.972 50.000 8.43 3.79 46.97 3.96
2854 3139 1.423450 GTCATGTGCGCGTTATGCA 59.577 52.632 8.43 0.00 46.97 3.96
2855 3140 1.297598 GGTCATGTGCGCGTTATGC 60.298 57.895 8.43 6.61 41.47 3.14
2856 3141 0.301687 GAGGTCATGTGCGCGTTATG 59.698 55.000 8.43 10.34 0.00 1.90
2857 3142 0.175760 AGAGGTCATGTGCGCGTTAT 59.824 50.000 8.43 0.00 0.00 1.89
2858 3143 0.457853 GAGAGGTCATGTGCGCGTTA 60.458 55.000 8.43 0.00 0.00 3.18
2859 3144 1.738099 GAGAGGTCATGTGCGCGTT 60.738 57.895 8.43 0.00 0.00 4.84
2860 3145 2.125912 GAGAGGTCATGTGCGCGT 60.126 61.111 8.43 0.00 0.00 6.01
2861 3146 0.179137 TAAGAGAGGTCATGTGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
2862 3147 1.565305 CTAAGAGAGGTCATGTGCGC 58.435 55.000 0.00 0.00 0.00 6.09
2863 3148 1.565305 GCTAAGAGAGGTCATGTGCG 58.435 55.000 0.00 0.00 0.00 5.34
2864 3149 1.208052 TGGCTAAGAGAGGTCATGTGC 59.792 52.381 0.00 0.00 0.00 4.57
2865 3150 2.419297 GGTGGCTAAGAGAGGTCATGTG 60.419 54.545 0.00 0.00 0.00 3.21
2866 3151 1.834263 GGTGGCTAAGAGAGGTCATGT 59.166 52.381 0.00 0.00 0.00 3.21
2867 3152 2.114616 AGGTGGCTAAGAGAGGTCATG 58.885 52.381 0.00 0.00 0.00 3.07
2868 3153 2.559381 AGGTGGCTAAGAGAGGTCAT 57.441 50.000 0.00 0.00 0.00 3.06
2869 3154 3.205507 AGATAGGTGGCTAAGAGAGGTCA 59.794 47.826 0.00 0.00 0.00 4.02
2870 3155 3.824443 GAGATAGGTGGCTAAGAGAGGTC 59.176 52.174 0.00 0.00 0.00 3.85
2871 3156 3.205507 TGAGATAGGTGGCTAAGAGAGGT 59.794 47.826 0.00 0.00 0.00 3.85
2872 3157 3.572255 GTGAGATAGGTGGCTAAGAGAGG 59.428 52.174 0.00 0.00 0.00 3.69
2873 3158 3.252215 CGTGAGATAGGTGGCTAAGAGAG 59.748 52.174 0.00 0.00 0.00 3.20
2874 3159 3.215151 CGTGAGATAGGTGGCTAAGAGA 58.785 50.000 0.00 0.00 0.00 3.10
2875 3160 2.294791 CCGTGAGATAGGTGGCTAAGAG 59.705 54.545 0.00 0.00 0.00 2.85
2876 3161 2.307768 CCGTGAGATAGGTGGCTAAGA 58.692 52.381 0.00 0.00 0.00 2.10
2877 3162 2.032620 ACCGTGAGATAGGTGGCTAAG 58.967 52.381 0.00 0.00 39.66 2.18
2878 3163 2.029623 GACCGTGAGATAGGTGGCTAA 58.970 52.381 0.00 0.00 41.51 3.09
2879 3164 1.688772 GACCGTGAGATAGGTGGCTA 58.311 55.000 0.00 0.00 41.51 3.93
2880 3165 1.043673 GGACCGTGAGATAGGTGGCT 61.044 60.000 0.00 0.00 41.51 4.75
2881 3166 1.442148 GGACCGTGAGATAGGTGGC 59.558 63.158 0.00 0.00 41.51 5.01
2882 3167 1.735376 CGGGACCGTGAGATAGGTGG 61.735 65.000 1.86 0.00 41.51 4.61
2883 3168 1.734137 CGGGACCGTGAGATAGGTG 59.266 63.158 1.86 0.00 41.51 4.00
2884 3169 2.125961 GCGGGACCGTGAGATAGGT 61.126 63.158 12.83 0.00 44.64 3.08
2885 3170 2.125326 TGCGGGACCGTGAGATAGG 61.125 63.158 12.83 0.00 42.09 2.57
2886 3171 1.065928 GTGCGGGACCGTGAGATAG 59.934 63.158 12.83 0.00 42.09 2.08
2887 3172 2.767445 CGTGCGGGACCGTGAGATA 61.767 63.158 12.83 0.00 42.09 1.98
2888 3173 4.129737 CGTGCGGGACCGTGAGAT 62.130 66.667 12.83 0.00 42.09 2.75
2903 3188 4.295119 GACTGTCACACGGGGCGT 62.295 66.667 2.24 0.00 42.36 5.68
2904 3189 4.293648 TGACTGTCACACGGGGCG 62.294 66.667 6.36 0.00 0.00 6.13
2905 3190 2.665185 GTGACTGTCACACGGGGC 60.665 66.667 30.43 6.34 46.22 5.80
2912 3197 2.279252 ACGCGTGGTGACTGTCAC 60.279 61.111 28.29 28.29 46.23 3.67
2913 3198 2.027024 GACGCGTGGTGACTGTCA 59.973 61.111 20.70 6.36 0.00 3.58
2914 3199 2.733593 GGACGCGTGGTGACTGTC 60.734 66.667 20.70 0.00 0.00 3.51
2915 3200 4.295119 GGGACGCGTGGTGACTGT 62.295 66.667 20.70 0.00 0.00 3.55
2928 3213 1.451387 CCATGGCAACTACGGGGAC 60.451 63.158 0.00 0.00 37.61 4.46
2929 3214 1.906105 GACCATGGCAACTACGGGGA 61.906 60.000 13.04 0.00 37.61 4.81
2930 3215 1.451387 GACCATGGCAACTACGGGG 60.451 63.158 13.04 0.00 37.61 5.73
2931 3216 1.451387 GGACCATGGCAACTACGGG 60.451 63.158 13.04 0.00 37.61 5.28
2932 3217 1.813753 CGGACCATGGCAACTACGG 60.814 63.158 13.04 0.00 37.61 4.02
2933 3218 1.813753 CCGGACCATGGCAACTACG 60.814 63.158 13.04 4.45 37.61 3.51
2934 3219 0.180406 ATCCGGACCATGGCAACTAC 59.820 55.000 13.04 0.00 37.61 2.73
2935 3220 0.468226 GATCCGGACCATGGCAACTA 59.532 55.000 13.04 0.00 37.61 2.24
2936 3221 1.224592 GATCCGGACCATGGCAACT 59.775 57.895 13.04 0.00 37.61 3.16
2937 3222 1.823899 GGATCCGGACCATGGCAAC 60.824 63.158 13.04 3.47 0.00 4.17
2938 3223 1.983119 GAGGATCCGGACCATGGCAA 61.983 60.000 13.04 0.00 0.00 4.52
2939 3224 2.366837 AGGATCCGGACCATGGCA 60.367 61.111 13.04 0.00 0.00 4.92
2940 3225 1.700042 AAGAGGATCCGGACCATGGC 61.700 60.000 13.04 4.47 33.66 4.40
2941 3226 0.394565 GAAGAGGATCCGGACCATGG 59.605 60.000 20.68 11.19 33.66 3.66
2942 3227 1.123077 TGAAGAGGATCCGGACCATG 58.877 55.000 20.68 0.00 33.66 3.66
2943 3228 1.879575 TTGAAGAGGATCCGGACCAT 58.120 50.000 20.68 3.99 33.66 3.55
2944 3229 1.486310 CATTGAAGAGGATCCGGACCA 59.514 52.381 20.68 0.88 33.66 4.02
2945 3230 1.486726 ACATTGAAGAGGATCCGGACC 59.513 52.381 6.12 10.93 33.66 4.46
2946 3231 2.483889 GGACATTGAAGAGGATCCGGAC 60.484 54.545 6.12 0.00 33.66 4.79
2947 3232 1.762957 GGACATTGAAGAGGATCCGGA 59.237 52.381 6.61 6.61 33.66 5.14
2948 3233 1.539065 CGGACATTGAAGAGGATCCGG 60.539 57.143 5.98 0.00 44.18 5.14
2949 3234 1.858091 CGGACATTGAAGAGGATCCG 58.142 55.000 5.98 0.00 42.69 4.18
2950 3235 2.990066 ACGGACATTGAAGAGGATCC 57.010 50.000 2.48 2.48 33.66 3.36
2951 3236 5.875359 AGTTAAACGGACATTGAAGAGGATC 59.125 40.000 0.00 0.00 0.00 3.36
2952 3237 5.643777 CAGTTAAACGGACATTGAAGAGGAT 59.356 40.000 0.00 0.00 0.00 3.24
2953 3238 4.994852 CAGTTAAACGGACATTGAAGAGGA 59.005 41.667 0.00 0.00 0.00 3.71
2954 3239 4.378459 GCAGTTAAACGGACATTGAAGAGG 60.378 45.833 0.00 0.00 0.00 3.69
2955 3240 4.213270 TGCAGTTAAACGGACATTGAAGAG 59.787 41.667 0.00 0.00 0.00 2.85
2956 3241 4.130857 TGCAGTTAAACGGACATTGAAGA 58.869 39.130 0.00 0.00 0.00 2.87
2957 3242 4.024048 ACTGCAGTTAAACGGACATTGAAG 60.024 41.667 15.25 0.00 0.00 3.02
2958 3243 3.880490 ACTGCAGTTAAACGGACATTGAA 59.120 39.130 15.25 0.00 0.00 2.69
2959 3244 3.472652 ACTGCAGTTAAACGGACATTGA 58.527 40.909 15.25 0.00 0.00 2.57
2960 3245 3.896648 ACTGCAGTTAAACGGACATTG 57.103 42.857 15.25 0.00 0.00 2.82
2961 3246 3.550030 GCAACTGCAGTTAAACGGACATT 60.550 43.478 30.67 2.31 41.59 2.71
2962 3247 2.031157 GCAACTGCAGTTAAACGGACAT 60.031 45.455 30.67 2.88 41.59 3.06
2963 3248 1.332375 GCAACTGCAGTTAAACGGACA 59.668 47.619 30.67 0.00 41.59 4.02
2964 3249 1.334689 GGCAACTGCAGTTAAACGGAC 60.335 52.381 30.67 17.21 44.36 4.79
2965 3250 0.948678 GGCAACTGCAGTTAAACGGA 59.051 50.000 30.67 0.00 44.36 4.69
2966 3251 0.665835 TGGCAACTGCAGTTAAACGG 59.334 50.000 30.67 19.05 44.36 4.44
2967 3252 2.287547 ACATGGCAACTGCAGTTAAACG 60.288 45.455 30.67 19.41 44.36 3.60
2968 3253 3.308530 GACATGGCAACTGCAGTTAAAC 58.691 45.455 30.67 22.27 44.36 2.01
2969 3254 2.031245 CGACATGGCAACTGCAGTTAAA 60.031 45.455 30.67 19.09 44.36 1.52
2970 3255 1.535028 CGACATGGCAACTGCAGTTAA 59.465 47.619 30.67 19.43 44.36 2.01
2971 3256 1.155889 CGACATGGCAACTGCAGTTA 58.844 50.000 30.67 16.98 44.36 2.24
2972 3257 1.951510 CGACATGGCAACTGCAGTT 59.048 52.632 26.36 26.36 44.36 3.16
2973 3258 2.620112 GCGACATGGCAACTGCAGT 61.620 57.895 15.25 15.25 44.36 4.40
2974 3259 2.177531 GCGACATGGCAACTGCAG 59.822 61.111 13.48 13.48 44.36 4.41
2975 3260 2.281692 AGCGACATGGCAACTGCA 60.282 55.556 0.00 0.00 44.36 4.41
2976 3261 1.855213 TTCAGCGACATGGCAACTGC 61.855 55.000 12.73 0.88 41.14 4.40
2977 3262 0.110056 GTTCAGCGACATGGCAACTG 60.110 55.000 11.56 11.56 34.64 3.16
2978 3263 0.250467 AGTTCAGCGACATGGCAACT 60.250 50.000 0.00 0.00 34.64 3.16
2979 3264 1.128692 GTAGTTCAGCGACATGGCAAC 59.871 52.381 0.00 0.00 34.64 4.17
2980 3265 1.270571 TGTAGTTCAGCGACATGGCAA 60.271 47.619 0.00 0.00 34.64 4.52
2981 3266 0.320050 TGTAGTTCAGCGACATGGCA 59.680 50.000 0.00 0.00 34.64 4.92
2982 3267 1.002366 CTGTAGTTCAGCGACATGGC 58.998 55.000 0.00 0.00 37.36 4.40
2992 3277 2.884012 CAACCATGGCAACTGTAGTTCA 59.116 45.455 13.04 0.00 35.83 3.18
2993 3278 2.351738 GCAACCATGGCAACTGTAGTTC 60.352 50.000 13.04 0.00 35.83 3.01
2994 3279 1.613437 GCAACCATGGCAACTGTAGTT 59.387 47.619 13.04 0.00 39.12 2.24
2995 3280 1.202927 AGCAACCATGGCAACTGTAGT 60.203 47.619 13.04 0.00 37.61 2.73
2996 3281 1.470098 GAGCAACCATGGCAACTGTAG 59.530 52.381 13.04 0.00 37.61 2.74
2997 3282 1.202867 TGAGCAACCATGGCAACTGTA 60.203 47.619 13.04 0.00 37.61 2.74
2998 3283 0.467844 TGAGCAACCATGGCAACTGT 60.468 50.000 13.04 0.00 37.61 3.55
2999 3284 0.675083 TTGAGCAACCATGGCAACTG 59.325 50.000 13.04 5.49 37.61 3.16
3000 3285 0.675633 GTTGAGCAACCATGGCAACT 59.324 50.000 19.25 11.63 36.73 3.16
3001 3286 0.675633 AGTTGAGCAACCATGGCAAC 59.324 50.000 19.02 19.02 42.06 4.17
3002 3287 0.675083 CAGTTGAGCAACCATGGCAA 59.325 50.000 13.04 4.49 42.06 4.52
3003 3288 1.808531 GCAGTTGAGCAACCATGGCA 61.809 55.000 13.04 0.00 42.06 4.92
3004 3289 1.080298 GCAGTTGAGCAACCATGGC 60.080 57.895 13.04 0.00 42.06 4.40
3005 3290 0.242825 CTGCAGTTGAGCAACCATGG 59.757 55.000 11.19 11.19 45.13 3.66
3006 3291 0.956633 ACTGCAGTTGAGCAACCATG 59.043 50.000 15.25 4.34 45.13 3.66
3007 3292 3.426903 ACTGCAGTTGAGCAACCAT 57.573 47.368 15.25 0.00 45.13 3.55
3008 3293 4.984194 ACTGCAGTTGAGCAACCA 57.016 50.000 15.25 1.68 45.13 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.