Multiple sequence alignment - TraesCS2A01G315300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G315300 chr2A 100.000 4245 0 0 1 4245 540851128 540846884 0.000000e+00 7840.0
1 TraesCS2A01G315300 chr2A 93.411 258 17 0 2030 2287 541776852 541777109 2.390000e-102 383.0
2 TraesCS2A01G315300 chr2A 90.385 208 20 0 1711 1918 541776544 541776751 1.500000e-69 274.0
3 TraesCS2A01G315300 chr2A 84.490 245 30 8 1055 1295 541775924 541776164 7.100000e-58 235.0
4 TraesCS2A01G315300 chr2A 92.941 85 4 2 3710 3792 107387178 107387262 5.760000e-24 122.0
5 TraesCS2A01G315300 chr2A 89.583 96 7 2 3715 3808 156525766 156525672 7.460000e-23 119.0
6 TraesCS2A01G315300 chr2D 94.882 2931 116 21 1302 4215 403347548 403344635 0.000000e+00 4551.0
7 TraesCS2A01G315300 chr2D 96.110 694 16 6 628 1315 403348252 403347564 0.000000e+00 1122.0
8 TraesCS2A01G315300 chr2D 89.598 423 36 6 1 418 596206272 596205853 8.080000e-147 531.0
9 TraesCS2A01G315300 chr2D 89.070 430 38 7 1 426 508733519 508733095 3.760000e-145 525.0
10 TraesCS2A01G315300 chr2D 93.798 258 16 0 2030 2287 403479339 403479596 5.150000e-104 388.0
11 TraesCS2A01G315300 chr2D 91.346 208 18 0 1711 1918 403479015 403479222 6.950000e-73 285.0
12 TraesCS2A01G315300 chr2D 84.774 243 33 4 1055 1295 403478396 403478636 1.530000e-59 241.0
13 TraesCS2A01G315300 chr2D 87.356 174 18 4 428 599 368938244 368938415 3.350000e-46 196.0
14 TraesCS2A01G315300 chr2D 85.246 183 23 3 428 606 313802809 313802991 7.250000e-43 185.0
15 TraesCS2A01G315300 chr2D 83.516 182 26 4 428 606 358093587 358093407 2.630000e-37 167.0
16 TraesCS2A01G315300 chr2B 92.321 1693 57 29 628 2310 477530261 477528632 0.000000e+00 2338.0
17 TraesCS2A01G315300 chr2B 94.327 899 34 9 2508 3403 477528345 477527461 0.000000e+00 1362.0
18 TraesCS2A01G315300 chr2B 89.286 756 43 14 3470 4215 477527464 477526737 0.000000e+00 913.0
19 TraesCS2A01G315300 chr2B 93.798 258 16 0 2030 2287 477574344 477574601 5.150000e-104 388.0
20 TraesCS2A01G315300 chr2B 89.904 208 21 0 1711 1918 477574021 477574228 7.000000e-68 268.0
21 TraesCS2A01G315300 chr2B 84.711 242 35 2 1055 1295 477573392 477573632 1.530000e-59 241.0
22 TraesCS2A01G315300 chr2B 90.441 136 6 2 2355 2490 477528553 477528425 5.640000e-39 172.0
23 TraesCS2A01G315300 chr2B 97.561 41 1 0 2393 2433 477528636 477528596 2.120000e-08 71.3
24 TraesCS2A01G315300 chr4D 90.233 430 33 7 1 426 72715384 72714960 1.720000e-153 553.0
25 TraesCS2A01G315300 chr4D 82.203 590 80 22 1711 2293 393636552 393637123 6.380000e-133 484.0
26 TraesCS2A01G315300 chr4D 92.278 259 20 0 2030 2288 28839750 28840008 6.710000e-98 368.0
27 TraesCS2A01G315300 chr4D 90.909 220 20 0 1714 1933 28839450 28839669 3.210000e-76 296.0
28 TraesCS2A01G315300 chr4D 90.995 211 18 1 1088 1298 28560230 28560439 2.500000e-72 283.0
29 TraesCS2A01G315300 chr4D 90.476 210 20 0 1088 1297 28837079 28837288 1.160000e-70 278.0
30 TraesCS2A01G315300 chr4D 90.476 210 18 2 1088 1296 393635965 393636173 4.180000e-70 276.0
31 TraesCS2A01G315300 chr4D 86.916 214 27 1 1392 1605 393636266 393636478 5.490000e-59 239.0
32 TraesCS2A01G315300 chr4D 92.683 82 5 1 3712 3792 479997576 479997657 2.680000e-22 117.0
33 TraesCS2A01G315300 chr4D 90.805 87 6 1 3715 3801 484354673 484354757 9.650000e-22 115.0
34 TraesCS2A01G315300 chr3D 90.521 422 33 5 1 418 605345394 605345812 6.200000e-153 551.0
35 TraesCS2A01G315300 chr3D 89.862 434 35 7 1 428 429093833 429093403 2.230000e-152 549.0
36 TraesCS2A01G315300 chr3D 89.810 422 36 5 1 418 605442605 605443023 6.250000e-148 534.0
37 TraesCS2A01G315300 chr3D 87.500 168 19 2 433 598 561087314 561087481 4.330000e-45 193.0
38 TraesCS2A01G315300 chr5D 89.862 434 32 7 1 426 546898735 546898306 8.020000e-152 547.0
39 TraesCS2A01G315300 chr5D 89.583 432 33 8 1 426 216062202 216062627 4.830000e-149 538.0
40 TraesCS2A01G315300 chr5D 85.556 180 24 2 428 605 521150821 521150642 2.020000e-43 187.0
41 TraesCS2A01G315300 chr5D 84.483 174 24 3 428 599 9923393 9923565 7.300000e-38 169.0
42 TraesCS2A01G315300 chr5D 90.805 87 7 1 3714 3799 18193788 18193874 9.650000e-22 115.0
43 TraesCS2A01G315300 chr1D 89.810 422 32 7 1 417 409989983 409989568 8.080000e-147 531.0
44 TraesCS2A01G315300 chr1D 90.000 90 8 1 3704 3792 337065179 337065268 9.650000e-22 115.0
45 TraesCS2A01G315300 chr4A 81.055 512 78 16 1097 1599 641451288 641451789 1.430000e-104 390.0
46 TraesCS2A01G315300 chr4A 91.120 259 23 0 2030 2288 574870088 574869830 6.750000e-93 351.0
47 TraesCS2A01G315300 chr4A 90.909 220 20 0 1714 1933 574870423 574870204 3.210000e-76 296.0
48 TraesCS2A01G315300 chr4A 91.469 211 18 0 1088 1298 574872617 574872407 1.490000e-74 291.0
49 TraesCS2A01G315300 chr4A 90.610 213 20 0 1088 1300 75215126 75214914 2.500000e-72 283.0
50 TraesCS2A01G315300 chr4A 86.792 212 28 0 1392 1603 75214825 75214614 1.970000e-58 237.0
51 TraesCS2A01G315300 chr4A 77.055 292 65 2 2796 3086 641452494 641452784 2.630000e-37 167.0
52 TraesCS2A01G315300 chr4B 92.278 259 20 0 2030 2288 41012876 41013134 6.710000e-98 368.0
53 TraesCS2A01G315300 chr4B 89.811 265 26 1 2030 2293 483334258 483333994 5.260000e-89 339.0
54 TraesCS2A01G315300 chr4B 91.364 220 19 0 1714 1933 41012544 41012763 6.900000e-78 302.0
55 TraesCS2A01G315300 chr4B 91.866 209 17 0 1088 1296 41010039 41010247 4.150000e-75 292.0
56 TraesCS2A01G315300 chr4B 87.383 214 26 1 1392 1605 483334955 483334743 1.180000e-60 244.0
57 TraesCS2A01G315300 chr3B 91.866 209 17 0 1088 1296 9914558 9914766 4.150000e-75 292.0
58 TraesCS2A01G315300 chr3B 88.542 96 10 1 3715 3809 820446008 820445913 9.650000e-22 115.0
59 TraesCS2A01G315300 chr5B 87.019 208 27 0 1392 1599 670067632 670067425 7.100000e-58 235.0
60 TraesCS2A01G315300 chr5B 85.057 174 24 2 428 599 400101723 400101896 4.360000e-40 176.0
61 TraesCS2A01G315300 chr6A 87.222 180 21 2 428 605 454644969 454644790 2.000000e-48 204.0
62 TraesCS2A01G315300 chr6A 94.937 79 3 1 3715 3792 594831611 594831689 5.760000e-24 122.0
63 TraesCS2A01G315300 chr3A 84.971 173 25 1 428 599 707623448 707623620 1.570000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G315300 chr2A 540846884 540851128 4244 True 7840.000000 7840 100.000000 1 4245 1 chr2A.!!$R2 4244
1 TraesCS2A01G315300 chr2A 541775924 541777109 1185 False 297.333333 383 89.428667 1055 2287 3 chr2A.!!$F2 1232
2 TraesCS2A01G315300 chr2D 403344635 403348252 3617 True 2836.500000 4551 95.496000 628 4215 2 chr2D.!!$R4 3587
3 TraesCS2A01G315300 chr2D 403478396 403479596 1200 False 304.666667 388 89.972667 1055 2287 3 chr2D.!!$F3 1232
4 TraesCS2A01G315300 chr2B 477526737 477530261 3524 True 971.260000 2338 92.787200 628 4215 5 chr2B.!!$R1 3587
5 TraesCS2A01G315300 chr2B 477573392 477574601 1209 False 299.000000 388 89.471000 1055 2287 3 chr2B.!!$F1 1232
6 TraesCS2A01G315300 chr4D 393635965 393637123 1158 False 333.000000 484 86.531667 1088 2293 3 chr4D.!!$F5 1205
7 TraesCS2A01G315300 chr4D 28837079 28840008 2929 False 314.000000 368 91.221000 1088 2288 3 chr4D.!!$F4 1200
8 TraesCS2A01G315300 chr4A 574869830 574872617 2787 True 312.666667 351 91.166000 1088 2288 3 chr4A.!!$R2 1200
9 TraesCS2A01G315300 chr4A 641451288 641452784 1496 False 278.500000 390 79.055000 1097 3086 2 chr4A.!!$F1 1989
10 TraesCS2A01G315300 chr4A 75214614 75215126 512 True 260.000000 283 88.701000 1088 1603 2 chr4A.!!$R1 515
11 TraesCS2A01G315300 chr4B 41010039 41013134 3095 False 320.666667 368 91.836000 1088 2288 3 chr4B.!!$F1 1200
12 TraesCS2A01G315300 chr4B 483333994 483334955 961 True 291.500000 339 88.597000 1392 2293 2 chr4B.!!$R1 901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 520 0.028902 AGACAAAAGTCCGTTTGCGC 59.971 50.0 0.00 0.0 41.33 6.09 F
546 547 0.168128 CTGGGCCGTTTGATTCGTTC 59.832 55.0 0.00 0.0 0.00 3.95 F
549 550 0.236449 GGCCGTTTGATTCGTTCGTT 59.764 50.0 0.00 0.0 0.00 3.85 F
930 931 0.613260 TGTCTATGCTGTGACACCCC 59.387 55.0 2.45 0.0 38.15 4.95 F
2028 4875 0.794473 GGTTTGGTCGATCGGTTGAC 59.206 55.0 16.41 7.6 37.92 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 5268 0.035630 AGAGGGAGCAGCACATGAAC 60.036 55.000 0.00 0.0 0.00 3.18 R
2460 5379 2.542824 CCCCAACAAAAACGTGCTACTG 60.543 50.000 0.00 0.0 0.00 2.74 R
2538 5525 3.252400 TGTGTTGCTTGCAGAAACAAAG 58.748 40.909 10.23 0.0 44.84 2.77 R
2866 5856 1.004745 ACCAGGTGAAAGTAGCCCATG 59.995 52.381 0.00 0.0 0.00 3.66 R
3498 6489 0.603065 TCGCAGAGCACTTAGAAGCA 59.397 50.000 4.59 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.445545 GCGCCGACGAGCTTTTGG 62.446 66.667 0.00 0.00 43.93 3.28
18 19 3.788766 CGCCGACGAGCTTTTGGG 61.789 66.667 0.00 0.00 43.93 4.12
19 20 4.103103 GCCGACGAGCTTTTGGGC 62.103 66.667 5.90 5.90 0.00 5.36
20 21 2.358737 CCGACGAGCTTTTGGGCT 60.359 61.111 0.00 0.00 46.11 5.19
21 22 1.079405 CCGACGAGCTTTTGGGCTA 60.079 57.895 0.00 0.00 43.20 3.93
22 23 1.084370 CCGACGAGCTTTTGGGCTAG 61.084 60.000 0.00 0.00 43.20 3.42
23 24 1.696832 CGACGAGCTTTTGGGCTAGC 61.697 60.000 6.04 6.04 43.20 3.42
24 25 0.673644 GACGAGCTTTTGGGCTAGCA 60.674 55.000 18.24 0.00 43.20 3.49
25 26 0.955919 ACGAGCTTTTGGGCTAGCAC 60.956 55.000 18.24 14.86 43.20 4.40
26 27 1.648467 CGAGCTTTTGGGCTAGCACC 61.648 60.000 15.98 14.56 43.20 5.01
52 53 2.182284 CCGGCCGTCATTCGTGTA 59.818 61.111 26.12 0.00 37.94 2.90
53 54 1.227147 CCGGCCGTCATTCGTGTAT 60.227 57.895 26.12 0.00 37.94 2.29
54 55 1.213094 CCGGCCGTCATTCGTGTATC 61.213 60.000 26.12 0.00 37.94 2.24
55 56 0.248907 CGGCCGTCATTCGTGTATCT 60.249 55.000 19.50 0.00 37.94 1.98
56 57 1.209128 GGCCGTCATTCGTGTATCTG 58.791 55.000 0.00 0.00 37.94 2.90
57 58 0.577269 GCCGTCATTCGTGTATCTGC 59.423 55.000 0.00 0.00 37.94 4.26
58 59 1.209128 CCGTCATTCGTGTATCTGCC 58.791 55.000 0.00 0.00 37.94 4.85
59 60 0.846401 CGTCATTCGTGTATCTGCCG 59.154 55.000 0.00 0.00 34.52 5.69
60 61 1.209128 GTCATTCGTGTATCTGCCGG 58.791 55.000 0.00 0.00 0.00 6.13
61 62 0.529773 TCATTCGTGTATCTGCCGGC 60.530 55.000 22.73 22.73 0.00 6.13
62 63 1.591594 ATTCGTGTATCTGCCGGCG 60.592 57.895 23.90 16.91 0.00 6.46
63 64 2.971428 ATTCGTGTATCTGCCGGCGG 62.971 60.000 30.18 30.18 0.00 6.13
64 65 4.201679 CGTGTATCTGCCGGCGGA 62.202 66.667 38.68 38.68 35.60 5.54
65 66 2.585247 GTGTATCTGCCGGCGGAC 60.585 66.667 39.38 27.84 33.73 4.79
66 67 3.845259 TGTATCTGCCGGCGGACC 61.845 66.667 39.38 30.37 33.73 4.46
67 68 3.845259 GTATCTGCCGGCGGACCA 61.845 66.667 39.38 26.74 33.73 4.02
68 69 3.845259 TATCTGCCGGCGGACCAC 61.845 66.667 39.38 12.81 33.73 4.16
93 94 3.204597 GGTGTAGATCCGAGCGATAAG 57.795 52.381 0.00 0.00 0.00 1.73
94 95 2.812591 GGTGTAGATCCGAGCGATAAGA 59.187 50.000 0.00 0.00 0.00 2.10
95 96 3.120130 GGTGTAGATCCGAGCGATAAGAG 60.120 52.174 0.00 0.00 0.00 2.85
96 97 3.075148 TGTAGATCCGAGCGATAAGAGG 58.925 50.000 0.00 0.00 0.00 3.69
97 98 2.570415 AGATCCGAGCGATAAGAGGA 57.430 50.000 0.00 0.00 35.24 3.71
98 99 2.432444 AGATCCGAGCGATAAGAGGAG 58.568 52.381 0.00 0.00 34.14 3.69
99 100 1.470890 GATCCGAGCGATAAGAGGAGG 59.529 57.143 0.00 0.00 34.14 4.30
100 101 0.472898 TCCGAGCGATAAGAGGAGGA 59.527 55.000 0.00 0.00 0.00 3.71
101 102 0.878416 CCGAGCGATAAGAGGAGGAG 59.122 60.000 0.00 0.00 0.00 3.69
102 103 0.239879 CGAGCGATAAGAGGAGGAGC 59.760 60.000 0.00 0.00 0.00 4.70
103 104 0.601057 GAGCGATAAGAGGAGGAGCC 59.399 60.000 0.00 0.00 0.00 4.70
104 105 0.105964 AGCGATAAGAGGAGGAGCCA 60.106 55.000 0.00 0.00 40.02 4.75
105 106 0.032815 GCGATAAGAGGAGGAGCCAC 59.967 60.000 0.00 0.00 40.02 5.01
106 107 1.698506 CGATAAGAGGAGGAGCCACT 58.301 55.000 0.00 0.00 39.48 4.00
107 108 1.339610 CGATAAGAGGAGGAGCCACTG 59.660 57.143 0.00 0.00 37.67 3.66
108 109 1.069978 GATAAGAGGAGGAGCCACTGC 59.930 57.143 0.00 0.00 37.67 4.40
109 110 0.978146 TAAGAGGAGGAGCCACTGCC 60.978 60.000 0.00 0.00 37.67 4.85
110 111 2.686835 GAGGAGGAGCCACTGCCT 60.687 66.667 0.00 0.00 40.02 4.75
111 112 1.381872 GAGGAGGAGCCACTGCCTA 60.382 63.158 0.00 0.00 40.02 3.93
112 113 1.681486 GAGGAGGAGCCACTGCCTAC 61.681 65.000 0.00 0.00 40.02 3.18
113 114 1.990060 GGAGGAGCCACTGCCTACA 60.990 63.158 0.00 0.00 35.09 2.74
114 115 1.341156 GGAGGAGCCACTGCCTACAT 61.341 60.000 0.00 0.00 35.09 2.29
115 116 0.179062 GAGGAGCCACTGCCTACATG 60.179 60.000 0.00 0.00 38.69 3.21
116 117 0.911525 AGGAGCCACTGCCTACATGT 60.912 55.000 2.69 2.69 38.69 3.21
117 118 0.745845 GGAGCCACTGCCTACATGTG 60.746 60.000 9.11 0.00 38.69 3.21
124 125 3.200522 GCCTACATGTGGCCTTGC 58.799 61.111 21.74 9.54 44.32 4.01
125 126 2.764314 GCCTACATGTGGCCTTGCG 61.764 63.158 21.74 2.98 44.32 4.85
126 127 2.114670 CCTACATGTGGCCTTGCGG 61.115 63.158 9.11 0.20 0.00 5.69
152 153 2.438434 GGGCCTTCCGACATGGTG 60.438 66.667 0.84 0.00 39.52 4.17
153 154 3.134127 GGCCTTCCGACATGGTGC 61.134 66.667 0.00 0.00 39.52 5.01
154 155 3.134127 GCCTTCCGACATGGTGCC 61.134 66.667 0.00 0.00 39.52 5.01
155 156 2.438434 CCTTCCGACATGGTGCCC 60.438 66.667 0.00 0.00 39.52 5.36
156 157 2.819595 CTTCCGACATGGTGCCCG 60.820 66.667 0.00 0.00 39.52 6.13
157 158 4.402528 TTCCGACATGGTGCCCGG 62.403 66.667 0.00 0.00 37.95 5.73
197 198 4.760047 CTCCCACAACCGGGCGAG 62.760 72.222 6.32 0.00 46.92 5.03
201 202 4.379243 CACAACCGGGCGAGCTCT 62.379 66.667 12.85 0.00 0.00 4.09
202 203 2.678934 ACAACCGGGCGAGCTCTA 60.679 61.111 12.85 0.00 0.00 2.43
203 204 2.105128 CAACCGGGCGAGCTCTAG 59.895 66.667 12.85 0.00 0.00 2.43
204 205 2.044252 AACCGGGCGAGCTCTAGA 60.044 61.111 12.85 0.00 0.00 2.43
205 206 2.416432 AACCGGGCGAGCTCTAGAC 61.416 63.158 12.85 0.00 0.00 2.59
206 207 3.597728 CCGGGCGAGCTCTAGACC 61.598 72.222 12.85 7.86 0.00 3.85
208 209 2.516460 GGGCGAGCTCTAGACCGA 60.516 66.667 12.85 0.00 0.00 4.69
209 210 2.716864 GGCGAGCTCTAGACCGAC 59.283 66.667 12.85 0.00 0.00 4.79
210 211 2.716864 GCGAGCTCTAGACCGACC 59.283 66.667 12.85 0.00 0.00 4.79
211 212 3.015677 CGAGCTCTAGACCGACCG 58.984 66.667 12.85 0.00 0.00 4.79
212 213 2.535788 CGAGCTCTAGACCGACCGG 61.536 68.421 12.85 6.94 42.03 5.28
213 214 1.153208 GAGCTCTAGACCGACCGGA 60.153 63.158 16.07 0.00 38.96 5.14
214 215 0.535553 GAGCTCTAGACCGACCGGAT 60.536 60.000 16.07 5.86 38.96 4.18
215 216 0.106619 AGCTCTAGACCGACCGGATT 60.107 55.000 16.07 5.20 38.96 3.01
216 217 0.311477 GCTCTAGACCGACCGGATTC 59.689 60.000 16.07 3.20 38.96 2.52
217 218 0.587285 CTCTAGACCGACCGGATTCG 59.413 60.000 16.07 8.23 38.96 3.34
218 219 1.008767 CTAGACCGACCGGATTCGC 60.009 63.158 16.07 0.00 37.70 4.70
219 220 2.403671 CTAGACCGACCGGATTCGCC 62.404 65.000 16.07 2.65 37.70 5.54
220 221 4.886121 GACCGACCGGATTCGCCC 62.886 72.222 16.07 0.00 37.70 6.13
223 224 4.460683 CGACCGGATTCGCCCCAA 62.461 66.667 9.46 0.00 34.56 4.12
224 225 2.045731 GACCGGATTCGCCCCAAA 60.046 61.111 9.46 0.00 34.56 3.28
225 226 1.453197 GACCGGATTCGCCCCAAAT 60.453 57.895 9.46 0.00 34.56 2.32
226 227 1.444917 GACCGGATTCGCCCCAAATC 61.445 60.000 9.46 0.00 34.56 2.17
227 228 2.193536 CCGGATTCGCCCCAAATCC 61.194 63.158 0.00 5.05 45.81 3.01
228 229 3.432186 GGATTCGCCCCAAATCCG 58.568 61.111 0.00 0.00 41.95 4.18
229 230 2.193536 GGATTCGCCCCAAATCCGG 61.194 63.158 0.00 0.00 41.95 5.14
230 231 2.833121 ATTCGCCCCAAATCCGGC 60.833 61.111 0.00 0.00 42.05 6.13
248 249 4.397090 CGGCGGTTGCGCAAATCA 62.397 61.111 26.87 0.00 44.10 2.57
249 250 2.504681 GGCGGTTGCGCAAATCAG 60.505 61.111 26.87 15.21 44.10 2.90
250 251 2.504681 GCGGTTGCGCAAATCAGG 60.505 61.111 26.87 13.04 34.62 3.86
251 252 2.953821 CGGTTGCGCAAATCAGGT 59.046 55.556 26.87 0.00 0.00 4.00
252 253 1.442520 CGGTTGCGCAAATCAGGTG 60.443 57.895 26.87 5.77 0.00 4.00
253 254 1.080569 GGTTGCGCAAATCAGGTGG 60.081 57.895 26.87 0.00 0.00 4.61
254 255 1.734117 GTTGCGCAAATCAGGTGGC 60.734 57.895 26.87 4.99 0.00 5.01
255 256 2.929903 TTGCGCAAATCAGGTGGCC 61.930 57.895 22.78 0.00 0.00 5.36
256 257 4.481112 GCGCAAATCAGGTGGCCG 62.481 66.667 0.30 0.00 0.00 6.13
257 258 3.055719 CGCAAATCAGGTGGCCGT 61.056 61.111 0.00 0.00 0.00 5.68
258 259 2.568090 GCAAATCAGGTGGCCGTG 59.432 61.111 0.00 0.00 0.00 4.94
259 260 2.993471 GCAAATCAGGTGGCCGTGG 61.993 63.158 0.00 0.00 0.00 4.94
260 261 1.603455 CAAATCAGGTGGCCGTGGT 60.603 57.895 0.00 0.00 0.00 4.16
261 262 1.152830 AAATCAGGTGGCCGTGGTT 59.847 52.632 0.00 0.00 31.34 3.67
262 263 1.178534 AAATCAGGTGGCCGTGGTTG 61.179 55.000 0.00 0.00 30.56 3.77
263 264 3.567579 ATCAGGTGGCCGTGGTTGG 62.568 63.158 0.00 0.00 0.00 3.77
266 267 3.956314 GGTGGCCGTGGTTGGGTA 61.956 66.667 0.00 0.00 0.00 3.69
267 268 2.359478 GTGGCCGTGGTTGGGTAG 60.359 66.667 0.00 0.00 0.00 3.18
268 269 4.338710 TGGCCGTGGTTGGGTAGC 62.339 66.667 0.00 0.00 0.00 3.58
269 270 4.029809 GGCCGTGGTTGGGTAGCT 62.030 66.667 0.00 0.00 0.00 3.32
270 271 2.436115 GCCGTGGTTGGGTAGCTC 60.436 66.667 0.00 0.00 0.00 4.09
271 272 2.125673 CCGTGGTTGGGTAGCTCG 60.126 66.667 0.00 0.00 40.00 5.03
272 273 2.125673 CGTGGTTGGGTAGCTCGG 60.126 66.667 0.00 0.00 37.53 4.63
273 274 2.267961 GTGGTTGGGTAGCTCGGG 59.732 66.667 0.00 0.00 0.00 5.14
274 275 3.006728 TGGTTGGGTAGCTCGGGG 61.007 66.667 0.00 0.00 0.00 5.73
275 276 3.793888 GGTTGGGTAGCTCGGGGG 61.794 72.222 0.00 0.00 0.00 5.40
276 277 4.484872 GTTGGGTAGCTCGGGGGC 62.485 72.222 0.00 0.00 0.00 5.80
293 294 4.016706 CGCCGAGGGGAAGGTGTT 62.017 66.667 0.00 0.00 34.06 3.32
294 295 2.359975 GCCGAGGGGAAGGTGTTG 60.360 66.667 0.00 0.00 34.06 3.33
295 296 2.351276 CCGAGGGGAAGGTGTTGG 59.649 66.667 0.00 0.00 34.06 3.77
296 297 2.351276 CGAGGGGAAGGTGTTGGG 59.649 66.667 0.00 0.00 0.00 4.12
297 298 2.035783 GAGGGGAAGGTGTTGGGC 59.964 66.667 0.00 0.00 0.00 5.36
298 299 3.920093 GAGGGGAAGGTGTTGGGCG 62.920 68.421 0.00 0.00 0.00 6.13
299 300 3.961414 GGGGAAGGTGTTGGGCGA 61.961 66.667 0.00 0.00 0.00 5.54
300 301 2.359975 GGGAAGGTGTTGGGCGAG 60.360 66.667 0.00 0.00 0.00 5.03
301 302 3.056328 GGAAGGTGTTGGGCGAGC 61.056 66.667 0.00 0.00 0.00 5.03
302 303 3.423154 GAAGGTGTTGGGCGAGCG 61.423 66.667 0.00 0.00 0.00 5.03
324 325 3.683937 GCCAGCGGGTGCACAAAT 61.684 61.111 20.43 0.00 46.23 2.32
325 326 2.568090 CCAGCGGGTGCACAAATC 59.432 61.111 20.43 4.35 46.23 2.17
326 327 2.267351 CCAGCGGGTGCACAAATCA 61.267 57.895 20.43 0.00 46.23 2.57
327 328 1.659233 CAGCGGGTGCACAAATCAA 59.341 52.632 20.43 0.00 46.23 2.57
328 329 0.244450 CAGCGGGTGCACAAATCAAT 59.756 50.000 20.43 0.00 46.23 2.57
329 330 0.244450 AGCGGGTGCACAAATCAATG 59.756 50.000 20.43 0.00 46.23 2.82
330 331 0.243365 GCGGGTGCACAAATCAATGA 59.757 50.000 20.43 0.00 42.15 2.57
331 332 1.981254 CGGGTGCACAAATCAATGAC 58.019 50.000 20.43 0.00 0.00 3.06
332 333 1.269174 CGGGTGCACAAATCAATGACA 59.731 47.619 20.43 0.00 0.00 3.58
333 334 2.669113 CGGGTGCACAAATCAATGACAG 60.669 50.000 20.43 0.00 0.00 3.51
334 335 2.331194 GGTGCACAAATCAATGACAGC 58.669 47.619 20.43 0.00 0.00 4.40
335 336 1.980844 GTGCACAAATCAATGACAGCG 59.019 47.619 13.17 0.00 0.00 5.18
336 337 1.068402 TGCACAAATCAATGACAGCGG 60.068 47.619 0.00 0.00 0.00 5.52
337 338 1.621107 CACAAATCAATGACAGCGGC 58.379 50.000 0.00 0.00 0.00 6.53
338 339 0.168788 ACAAATCAATGACAGCGGCG 59.831 50.000 0.51 0.51 0.00 6.46
339 340 0.523968 CAAATCAATGACAGCGGCGG 60.524 55.000 9.78 0.00 0.00 6.13
340 341 2.270297 AAATCAATGACAGCGGCGGC 62.270 55.000 9.78 8.43 40.37 6.53
357 358 4.069232 CGGCGAGGGCAAGAGTGA 62.069 66.667 0.00 0.00 42.47 3.41
358 359 2.125350 GGCGAGGGCAAGAGTGAG 60.125 66.667 0.00 0.00 42.47 3.51
359 360 2.125350 GCGAGGGCAAGAGTGAGG 60.125 66.667 0.00 0.00 39.62 3.86
360 361 2.650116 GCGAGGGCAAGAGTGAGGA 61.650 63.158 0.00 0.00 39.62 3.71
361 362 1.975327 CGAGGGCAAGAGTGAGGAA 59.025 57.895 0.00 0.00 0.00 3.36
362 363 0.108424 CGAGGGCAAGAGTGAGGAAG 60.108 60.000 0.00 0.00 0.00 3.46
363 364 1.270907 GAGGGCAAGAGTGAGGAAGA 58.729 55.000 0.00 0.00 0.00 2.87
364 365 1.206849 GAGGGCAAGAGTGAGGAAGAG 59.793 57.143 0.00 0.00 0.00 2.85
365 366 0.980423 GGGCAAGAGTGAGGAAGAGT 59.020 55.000 0.00 0.00 0.00 3.24
366 367 1.338579 GGGCAAGAGTGAGGAAGAGTG 60.339 57.143 0.00 0.00 0.00 3.51
367 368 1.338579 GGCAAGAGTGAGGAAGAGTGG 60.339 57.143 0.00 0.00 0.00 4.00
368 369 1.620819 GCAAGAGTGAGGAAGAGTGGA 59.379 52.381 0.00 0.00 0.00 4.02
369 370 2.353605 GCAAGAGTGAGGAAGAGTGGAG 60.354 54.545 0.00 0.00 0.00 3.86
370 371 3.161067 CAAGAGTGAGGAAGAGTGGAGA 58.839 50.000 0.00 0.00 0.00 3.71
371 372 3.534357 AGAGTGAGGAAGAGTGGAGAA 57.466 47.619 0.00 0.00 0.00 2.87
372 373 3.850752 AGAGTGAGGAAGAGTGGAGAAA 58.149 45.455 0.00 0.00 0.00 2.52
373 374 4.227197 AGAGTGAGGAAGAGTGGAGAAAA 58.773 43.478 0.00 0.00 0.00 2.29
374 375 4.283212 AGAGTGAGGAAGAGTGGAGAAAAG 59.717 45.833 0.00 0.00 0.00 2.27
375 376 3.970640 AGTGAGGAAGAGTGGAGAAAAGT 59.029 43.478 0.00 0.00 0.00 2.66
376 377 4.061596 GTGAGGAAGAGTGGAGAAAAGTG 58.938 47.826 0.00 0.00 0.00 3.16
377 378 3.071602 TGAGGAAGAGTGGAGAAAAGTGG 59.928 47.826 0.00 0.00 0.00 4.00
378 379 3.318313 AGGAAGAGTGGAGAAAAGTGGA 58.682 45.455 0.00 0.00 0.00 4.02
379 380 3.326297 AGGAAGAGTGGAGAAAAGTGGAG 59.674 47.826 0.00 0.00 0.00 3.86
380 381 3.325135 GGAAGAGTGGAGAAAAGTGGAGA 59.675 47.826 0.00 0.00 0.00 3.71
381 382 4.562552 GGAAGAGTGGAGAAAAGTGGAGAG 60.563 50.000 0.00 0.00 0.00 3.20
382 383 2.903135 AGAGTGGAGAAAAGTGGAGAGG 59.097 50.000 0.00 0.00 0.00 3.69
383 384 1.981495 AGTGGAGAAAAGTGGAGAGGG 59.019 52.381 0.00 0.00 0.00 4.30
384 385 1.700186 GTGGAGAAAAGTGGAGAGGGT 59.300 52.381 0.00 0.00 0.00 4.34
385 386 1.699634 TGGAGAAAAGTGGAGAGGGTG 59.300 52.381 0.00 0.00 0.00 4.61
386 387 1.611936 GGAGAAAAGTGGAGAGGGTGC 60.612 57.143 0.00 0.00 0.00 5.01
387 388 0.035458 AGAAAAGTGGAGAGGGTGCG 59.965 55.000 0.00 0.00 0.00 5.34
388 389 0.955919 GAAAAGTGGAGAGGGTGCGG 60.956 60.000 0.00 0.00 0.00 5.69
389 390 3.553095 AAAGTGGAGAGGGTGCGGC 62.553 63.158 0.00 0.00 0.00 6.53
410 411 4.250170 GGGAGGGAGGGGCGGATA 62.250 72.222 0.00 0.00 0.00 2.59
411 412 2.604991 GGAGGGAGGGGCGGATAG 60.605 72.222 0.00 0.00 0.00 2.08
412 413 2.526628 GAGGGAGGGGCGGATAGA 59.473 66.667 0.00 0.00 0.00 1.98
413 414 1.152312 GAGGGAGGGGCGGATAGAA 60.152 63.158 0.00 0.00 0.00 2.10
414 415 0.763223 GAGGGAGGGGCGGATAGAAA 60.763 60.000 0.00 0.00 0.00 2.52
415 416 0.327191 AGGGAGGGGCGGATAGAAAA 60.327 55.000 0.00 0.00 0.00 2.29
416 417 0.549469 GGGAGGGGCGGATAGAAAAA 59.451 55.000 0.00 0.00 0.00 1.94
417 418 1.477014 GGGAGGGGCGGATAGAAAAAG 60.477 57.143 0.00 0.00 0.00 2.27
418 419 1.489230 GGAGGGGCGGATAGAAAAAGA 59.511 52.381 0.00 0.00 0.00 2.52
419 420 2.562635 GAGGGGCGGATAGAAAAAGAC 58.437 52.381 0.00 0.00 0.00 3.01
420 421 1.913419 AGGGGCGGATAGAAAAAGACA 59.087 47.619 0.00 0.00 0.00 3.41
421 422 2.014857 GGGGCGGATAGAAAAAGACAC 58.985 52.381 0.00 0.00 0.00 3.67
422 423 2.014857 GGGCGGATAGAAAAAGACACC 58.985 52.381 0.00 0.00 0.00 4.16
423 424 2.014857 GGCGGATAGAAAAAGACACCC 58.985 52.381 0.00 0.00 0.00 4.61
424 425 2.014857 GCGGATAGAAAAAGACACCCC 58.985 52.381 0.00 0.00 0.00 4.95
425 426 2.355818 GCGGATAGAAAAAGACACCCCT 60.356 50.000 0.00 0.00 0.00 4.79
426 427 3.118519 GCGGATAGAAAAAGACACCCCTA 60.119 47.826 0.00 0.00 0.00 3.53
427 428 4.444449 GCGGATAGAAAAAGACACCCCTAT 60.444 45.833 0.00 0.00 0.00 2.57
428 429 5.298347 CGGATAGAAAAAGACACCCCTATC 58.702 45.833 0.00 0.00 34.56 2.08
429 430 5.622180 GGATAGAAAAAGACACCCCTATCC 58.378 45.833 0.00 0.00 42.76 2.59
430 431 3.629142 AGAAAAAGACACCCCTATCCG 57.371 47.619 0.00 0.00 0.00 4.18
431 432 2.014857 GAAAAAGACACCCCTATCCGC 58.985 52.381 0.00 0.00 0.00 5.54
432 433 0.107848 AAAAGACACCCCTATCCGCG 60.108 55.000 0.00 0.00 0.00 6.46
433 434 1.262640 AAAGACACCCCTATCCGCGT 61.263 55.000 4.92 0.00 0.00 6.01
434 435 1.956629 AAGACACCCCTATCCGCGTG 61.957 60.000 4.92 0.00 0.00 5.34
435 436 2.363276 ACACCCCTATCCGCGTGA 60.363 61.111 4.92 1.95 0.00 4.35
436 437 1.745320 GACACCCCTATCCGCGTGAT 61.745 60.000 4.92 10.30 37.49 3.06
437 438 1.300931 CACCCCTATCCGCGTGATG 60.301 63.158 17.04 9.08 34.76 3.07
438 439 1.760875 ACCCCTATCCGCGTGATGT 60.761 57.895 17.04 6.45 34.76 3.06
439 440 1.006102 CCCCTATCCGCGTGATGTC 60.006 63.158 17.04 0.00 34.76 3.06
440 441 1.006102 CCCTATCCGCGTGATGTCC 60.006 63.158 17.04 0.00 34.76 4.02
441 442 1.371758 CCTATCCGCGTGATGTCCG 60.372 63.158 17.04 5.97 34.76 4.79
442 443 1.359117 CTATCCGCGTGATGTCCGT 59.641 57.895 17.04 0.00 34.76 4.69
443 444 0.248907 CTATCCGCGTGATGTCCGTT 60.249 55.000 17.04 0.00 34.76 4.44
444 445 0.173935 TATCCGCGTGATGTCCGTTT 59.826 50.000 17.04 0.00 34.76 3.60
445 446 1.082117 ATCCGCGTGATGTCCGTTTC 61.082 55.000 4.92 0.00 30.54 2.78
446 447 2.024868 CCGCGTGATGTCCGTTTCA 61.025 57.895 4.92 0.00 0.00 2.69
447 448 1.129809 CGCGTGATGTCCGTTTCAC 59.870 57.895 0.00 0.00 39.07 3.18
448 449 1.495951 GCGTGATGTCCGTTTCACC 59.504 57.895 0.00 0.00 39.23 4.02
449 450 1.908066 GCGTGATGTCCGTTTCACCC 61.908 60.000 0.00 0.00 39.23 4.61
450 451 1.296056 CGTGATGTCCGTTTCACCCC 61.296 60.000 0.00 0.00 39.23 4.95
451 452 0.250553 GTGATGTCCGTTTCACCCCA 60.251 55.000 0.00 0.00 36.98 4.96
452 453 0.474614 TGATGTCCGTTTCACCCCAA 59.525 50.000 0.00 0.00 0.00 4.12
453 454 1.133761 TGATGTCCGTTTCACCCCAAA 60.134 47.619 0.00 0.00 0.00 3.28
454 455 1.957877 GATGTCCGTTTCACCCCAAAA 59.042 47.619 0.00 0.00 0.00 2.44
455 456 1.848652 TGTCCGTTTCACCCCAAAAA 58.151 45.000 0.00 0.00 0.00 1.94
456 457 1.477295 TGTCCGTTTCACCCCAAAAAC 59.523 47.619 0.00 0.00 33.12 2.43
459 460 2.980562 GTTTCACCCCAAAAACGGC 58.019 52.632 0.00 0.00 0.00 5.68
460 461 0.872451 GTTTCACCCCAAAAACGGCG 60.872 55.000 4.80 4.80 0.00 6.46
461 462 2.630592 TTTCACCCCAAAAACGGCGC 62.631 55.000 6.90 0.00 0.00 6.53
462 463 3.905678 CACCCCAAAAACGGCGCA 61.906 61.111 10.83 0.00 0.00 6.09
463 464 3.148279 ACCCCAAAAACGGCGCAA 61.148 55.556 10.83 0.00 0.00 4.85
464 465 2.107141 CCCCAAAAACGGCGCAAA 59.893 55.556 10.83 0.00 0.00 3.68
465 466 2.241190 CCCCAAAAACGGCGCAAAC 61.241 57.895 10.83 0.00 0.00 2.93
466 467 1.227118 CCCAAAAACGGCGCAAACT 60.227 52.632 10.83 0.00 0.00 2.66
467 468 0.808060 CCCAAAAACGGCGCAAACTT 60.808 50.000 10.83 0.00 0.00 2.66
468 469 0.300193 CCAAAAACGGCGCAAACTTG 59.700 50.000 10.83 5.62 0.00 3.16
469 470 1.272781 CAAAAACGGCGCAAACTTGA 58.727 45.000 10.83 0.00 0.00 3.02
470 471 1.255084 CAAAAACGGCGCAAACTTGAG 59.745 47.619 10.83 0.00 0.00 3.02
475 476 4.404654 GCGCAAACTTGAGCCGGG 62.405 66.667 0.30 0.00 46.30 5.73
476 477 2.668212 CGCAAACTTGAGCCGGGA 60.668 61.111 2.18 0.00 0.00 5.14
477 478 2.040544 CGCAAACTTGAGCCGGGAT 61.041 57.895 2.18 0.00 0.00 3.85
478 479 1.508088 GCAAACTTGAGCCGGGATG 59.492 57.895 2.18 0.00 0.00 3.51
479 480 0.960364 GCAAACTTGAGCCGGGATGA 60.960 55.000 2.18 0.00 0.00 2.92
480 481 1.089920 CAAACTTGAGCCGGGATGAG 58.910 55.000 2.18 0.00 0.00 2.90
481 482 0.693049 AAACTTGAGCCGGGATGAGT 59.307 50.000 2.18 0.00 0.00 3.41
482 483 0.250513 AACTTGAGCCGGGATGAGTC 59.749 55.000 2.18 0.00 0.00 3.36
483 484 0.904865 ACTTGAGCCGGGATGAGTCA 60.905 55.000 2.18 0.00 0.00 3.41
484 485 0.250234 CTTGAGCCGGGATGAGTCAA 59.750 55.000 2.18 0.00 0.00 3.18
485 486 0.690192 TTGAGCCGGGATGAGTCAAA 59.310 50.000 2.18 0.00 0.00 2.69
486 487 0.690192 TGAGCCGGGATGAGTCAAAA 59.310 50.000 2.18 0.00 0.00 2.44
487 488 1.339055 TGAGCCGGGATGAGTCAAAAG 60.339 52.381 2.18 0.00 0.00 2.27
488 489 0.678048 AGCCGGGATGAGTCAAAAGC 60.678 55.000 2.18 0.00 0.00 3.51
489 490 0.960364 GCCGGGATGAGTCAAAAGCA 60.960 55.000 2.18 0.00 0.00 3.91
490 491 1.089920 CCGGGATGAGTCAAAAGCAG 58.910 55.000 0.00 0.00 0.00 4.24
491 492 1.339055 CCGGGATGAGTCAAAAGCAGA 60.339 52.381 0.00 0.00 0.00 4.26
492 493 2.426522 CGGGATGAGTCAAAAGCAGAA 58.573 47.619 0.00 0.00 0.00 3.02
493 494 2.813754 CGGGATGAGTCAAAAGCAGAAA 59.186 45.455 0.00 0.00 0.00 2.52
494 495 3.120060 CGGGATGAGTCAAAAGCAGAAAG 60.120 47.826 0.00 0.00 0.00 2.62
495 496 4.074970 GGGATGAGTCAAAAGCAGAAAGA 58.925 43.478 0.00 0.00 0.00 2.52
496 497 4.520492 GGGATGAGTCAAAAGCAGAAAGAA 59.480 41.667 0.00 0.00 0.00 2.52
497 498 5.010012 GGGATGAGTCAAAAGCAGAAAGAAA 59.990 40.000 0.00 0.00 0.00 2.52
498 499 6.461509 GGGATGAGTCAAAAGCAGAAAGAAAA 60.462 38.462 0.00 0.00 0.00 2.29
499 500 6.419116 GGATGAGTCAAAAGCAGAAAGAAAAC 59.581 38.462 0.00 0.00 0.00 2.43
500 501 6.266168 TGAGTCAAAAGCAGAAAGAAAACA 57.734 33.333 0.00 0.00 0.00 2.83
501 502 6.324819 TGAGTCAAAAGCAGAAAGAAAACAG 58.675 36.000 0.00 0.00 0.00 3.16
502 503 6.150976 TGAGTCAAAAGCAGAAAGAAAACAGA 59.849 34.615 0.00 0.00 0.00 3.41
503 504 6.325596 AGTCAAAAGCAGAAAGAAAACAGAC 58.674 36.000 0.00 0.00 0.00 3.51
504 505 6.071952 AGTCAAAAGCAGAAAGAAAACAGACA 60.072 34.615 0.00 0.00 0.00 3.41
505 506 6.586082 GTCAAAAGCAGAAAGAAAACAGACAA 59.414 34.615 0.00 0.00 0.00 3.18
506 507 7.116233 GTCAAAAGCAGAAAGAAAACAGACAAA 59.884 33.333 0.00 0.00 0.00 2.83
507 508 7.655328 TCAAAAGCAGAAAGAAAACAGACAAAA 59.345 29.630 0.00 0.00 0.00 2.44
508 509 7.586714 AAAGCAGAAAGAAAACAGACAAAAG 57.413 32.000 0.00 0.00 0.00 2.27
509 510 6.272822 AGCAGAAAGAAAACAGACAAAAGT 57.727 33.333 0.00 0.00 0.00 2.66
510 511 6.325596 AGCAGAAAGAAAACAGACAAAAGTC 58.674 36.000 0.00 0.00 0.00 3.01
511 512 5.516696 GCAGAAAGAAAACAGACAAAAGTCC 59.483 40.000 0.00 0.00 0.00 3.85
512 513 5.739161 CAGAAAGAAAACAGACAAAAGTCCG 59.261 40.000 0.00 0.00 0.00 4.79
513 514 5.414765 AGAAAGAAAACAGACAAAAGTCCGT 59.585 36.000 0.00 0.00 0.00 4.69
514 515 5.638596 AAGAAAACAGACAAAAGTCCGTT 57.361 34.783 0.00 0.00 0.00 4.44
515 516 5.638596 AGAAAACAGACAAAAGTCCGTTT 57.361 34.783 4.60 4.60 36.03 3.60
516 517 5.399013 AGAAAACAGACAAAAGTCCGTTTG 58.601 37.500 9.83 4.49 42.93 2.93
517 518 2.844122 ACAGACAAAAGTCCGTTTGC 57.156 45.000 5.75 0.58 41.33 3.68
518 519 1.063469 ACAGACAAAAGTCCGTTTGCG 59.937 47.619 5.75 0.00 41.33 4.85
519 520 0.028902 AGACAAAAGTCCGTTTGCGC 59.971 50.000 0.00 0.00 41.33 6.09
520 521 0.933047 GACAAAAGTCCGTTTGCGCC 60.933 55.000 4.18 0.00 41.33 6.53
521 522 1.358759 CAAAAGTCCGTTTGCGCCT 59.641 52.632 4.18 0.00 36.67 5.52
522 523 0.934436 CAAAAGTCCGTTTGCGCCTG 60.934 55.000 4.18 0.00 36.67 4.85
523 524 2.677573 AAAAGTCCGTTTGCGCCTGC 62.678 55.000 4.18 0.00 43.20 4.85
540 541 3.055719 CACGCTGGGCCGTTTGAT 61.056 61.111 0.00 0.00 39.83 2.57
541 542 2.282180 ACGCTGGGCCGTTTGATT 60.282 55.556 0.00 0.00 38.47 2.57
542 543 2.332654 ACGCTGGGCCGTTTGATTC 61.333 57.895 0.00 0.00 38.47 2.52
543 544 2.485122 GCTGGGCCGTTTGATTCG 59.515 61.111 0.00 0.00 0.00 3.34
544 545 2.332654 GCTGGGCCGTTTGATTCGT 61.333 57.895 0.00 0.00 0.00 3.85
545 546 1.862602 GCTGGGCCGTTTGATTCGTT 61.863 55.000 0.00 0.00 0.00 3.85
546 547 0.168128 CTGGGCCGTTTGATTCGTTC 59.832 55.000 0.00 0.00 0.00 3.95
547 548 1.133869 GGGCCGTTTGATTCGTTCG 59.866 57.895 0.00 0.00 0.00 3.95
548 549 1.571215 GGGCCGTTTGATTCGTTCGT 61.571 55.000 0.00 0.00 0.00 3.85
549 550 0.236449 GGCCGTTTGATTCGTTCGTT 59.764 50.000 0.00 0.00 0.00 3.85
550 551 1.334329 GGCCGTTTGATTCGTTCGTTT 60.334 47.619 0.00 0.00 0.00 3.60
551 552 2.377880 GCCGTTTGATTCGTTCGTTTT 58.622 42.857 0.00 0.00 0.00 2.43
552 553 3.543670 GCCGTTTGATTCGTTCGTTTTA 58.456 40.909 0.00 0.00 0.00 1.52
553 554 3.355788 GCCGTTTGATTCGTTCGTTTTAC 59.644 43.478 0.00 0.00 0.00 2.01
554 555 4.764940 CCGTTTGATTCGTTCGTTTTACT 58.235 39.130 0.00 0.00 0.00 2.24
555 556 4.837050 CCGTTTGATTCGTTCGTTTTACTC 59.163 41.667 0.00 0.00 0.00 2.59
556 557 4.837050 CGTTTGATTCGTTCGTTTTACTCC 59.163 41.667 0.00 0.00 0.00 3.85
557 558 5.556758 CGTTTGATTCGTTCGTTTTACTCCA 60.557 40.000 0.00 0.00 0.00 3.86
558 559 5.987777 TTGATTCGTTCGTTTTACTCCAA 57.012 34.783 0.00 0.00 0.00 3.53
559 560 5.987777 TGATTCGTTCGTTTTACTCCAAA 57.012 34.783 0.00 0.00 0.00 3.28
560 561 5.740406 TGATTCGTTCGTTTTACTCCAAAC 58.260 37.500 0.00 0.00 33.90 2.93
561 562 5.293814 TGATTCGTTCGTTTTACTCCAAACA 59.706 36.000 0.00 0.00 36.58 2.83
562 563 4.782252 TCGTTCGTTTTACTCCAAACAG 57.218 40.909 0.00 0.00 36.58 3.16
563 564 4.431809 TCGTTCGTTTTACTCCAAACAGA 58.568 39.130 0.00 0.00 36.58 3.41
564 565 4.268405 TCGTTCGTTTTACTCCAAACAGAC 59.732 41.667 0.00 0.00 36.58 3.51
565 566 4.511734 GTTCGTTTTACTCCAAACAGACG 58.488 43.478 0.00 0.00 36.58 4.18
566 567 4.044336 TCGTTTTACTCCAAACAGACGA 57.956 40.909 0.00 0.00 35.57 4.20
567 568 4.431809 TCGTTTTACTCCAAACAGACGAA 58.568 39.130 0.00 0.00 35.21 3.85
568 569 4.268405 TCGTTTTACTCCAAACAGACGAAC 59.732 41.667 0.00 0.00 35.21 3.95
569 570 4.511734 GTTTTACTCCAAACAGACGAACG 58.488 43.478 0.00 0.00 36.75 3.95
570 571 1.774639 TACTCCAAACAGACGAACGC 58.225 50.000 0.00 0.00 0.00 4.84
571 572 1.213094 ACTCCAAACAGACGAACGCG 61.213 55.000 3.53 3.53 44.79 6.01
572 573 1.886861 CTCCAAACAGACGAACGCGG 61.887 60.000 12.47 0.00 43.17 6.46
573 574 1.952133 CCAAACAGACGAACGCGGA 60.952 57.895 12.47 0.00 43.17 5.54
574 575 1.200839 CAAACAGACGAACGCGGAC 59.799 57.895 12.47 2.42 43.17 4.79
575 576 1.227031 AAACAGACGAACGCGGACA 60.227 52.632 12.47 0.00 43.17 4.02
576 577 1.213094 AAACAGACGAACGCGGACAG 61.213 55.000 12.47 0.71 43.17 3.51
577 578 2.805353 CAGACGAACGCGGACAGG 60.805 66.667 12.47 0.00 43.17 4.00
578 579 2.981909 AGACGAACGCGGACAGGA 60.982 61.111 12.47 0.00 43.17 3.86
579 580 2.181021 GACGAACGCGGACAGGAT 59.819 61.111 12.47 0.00 43.17 3.24
580 581 2.126071 ACGAACGCGGACAGGATG 60.126 61.111 12.47 0.00 43.17 3.51
581 582 2.885644 CGAACGCGGACAGGATGG 60.886 66.667 12.47 0.00 43.62 3.51
582 583 2.511600 GAACGCGGACAGGATGGG 60.512 66.667 12.47 0.00 43.62 4.00
583 584 3.310860 GAACGCGGACAGGATGGGT 62.311 63.158 12.47 0.00 43.62 4.51
584 585 3.310860 AACGCGGACAGGATGGGTC 62.311 63.158 12.47 0.00 43.62 4.46
585 586 4.873129 CGCGGACAGGATGGGTCG 62.873 72.222 0.00 0.00 43.62 4.79
587 588 4.873129 CGGACAGGATGGGTCGCG 62.873 72.222 0.00 0.00 43.62 5.87
591 592 4.592192 CAGGATGGGTCGCGCGAT 62.592 66.667 37.03 20.78 0.00 4.58
592 593 4.592192 AGGATGGGTCGCGCGATG 62.592 66.667 37.03 4.79 0.00 3.84
594 595 4.585526 GATGGGTCGCGCGATGGA 62.586 66.667 37.03 21.92 0.00 3.41
595 596 4.592192 ATGGGTCGCGCGATGGAG 62.592 66.667 37.03 2.96 0.00 3.86
597 598 4.814294 GGGTCGCGCGATGGAGTT 62.814 66.667 37.03 0.00 0.00 3.01
598 599 3.554692 GGTCGCGCGATGGAGTTG 61.555 66.667 37.03 0.27 0.00 3.16
599 600 4.210304 GTCGCGCGATGGAGTTGC 62.210 66.667 37.03 16.65 0.00 4.17
604 605 3.794270 GCGATGGAGTTGCGCTAA 58.206 55.556 9.73 0.00 46.53 3.09
605 606 1.638467 GCGATGGAGTTGCGCTAAG 59.362 57.895 9.73 0.00 46.53 2.18
606 607 2.366787 GCGATGGAGTTGCGCTAAGC 62.367 60.000 9.73 0.00 46.53 3.09
625 626 2.961768 CCTCCGGCATTGCGTTTT 59.038 55.556 0.00 0.00 0.00 2.43
626 627 1.154035 CCTCCGGCATTGCGTTTTC 60.154 57.895 0.00 0.00 0.00 2.29
630 631 1.444212 CGGCATTGCGTTTTCCAGG 60.444 57.895 1.91 0.00 0.00 4.45
663 664 8.389586 AGACAAAACAAAAACAGTATTCGAAC 57.610 30.769 0.00 0.00 0.00 3.95
689 690 2.333938 GCAACAGGCACACAGCTG 59.666 61.111 13.48 13.48 44.79 4.24
690 691 2.333938 CAACAGGCACACAGCTGC 59.666 61.111 15.27 0.00 44.79 5.25
913 914 2.549611 GATCTGCTGCGTCGACCTGT 62.550 60.000 10.58 0.00 0.00 4.00
916 917 1.923227 CTGCTGCGTCGACCTGTCTA 61.923 60.000 10.58 0.00 0.00 2.59
930 931 0.613260 TGTCTATGCTGTGACACCCC 59.387 55.000 2.45 0.00 38.15 4.95
951 952 1.140804 GCTCACCCTCTCTTCTCGC 59.859 63.158 0.00 0.00 0.00 5.03
955 956 2.202676 CCCTCTCTTCTCGCACGC 60.203 66.667 0.00 0.00 0.00 5.34
959 960 3.175240 CTCTTCTCGCACGCCACG 61.175 66.667 0.00 0.00 0.00 4.94
1026 1033 3.390521 TCCAGGGCGCAGACGAAT 61.391 61.111 10.83 0.00 43.93 3.34
1038 1045 1.877165 GACGAATTCCGGCGAGTCC 60.877 63.158 9.30 0.00 43.93 3.85
1316 1323 7.234371 CCAGGTATCTCTCTATCATTTCCTTCA 59.766 40.741 0.00 0.00 0.00 3.02
1319 1326 7.973388 GGTATCTCTCTATCATTTCCTTCATCG 59.027 40.741 0.00 0.00 0.00 3.84
1320 1327 7.773489 ATCTCTCTATCATTTCCTTCATCGA 57.227 36.000 0.00 0.00 0.00 3.59
1322 1329 7.825681 TCTCTCTATCATTTCCTTCATCGATC 58.174 38.462 0.00 0.00 0.00 3.69
1323 1330 6.929625 TCTCTATCATTTCCTTCATCGATCC 58.070 40.000 0.00 0.00 0.00 3.36
1337 2678 5.367302 TCATCGATCCATTGATGCAGTTTA 58.633 37.500 10.84 0.00 44.66 2.01
1339 2680 4.512484 TCGATCCATTGATGCAGTTTACA 58.488 39.130 0.00 0.00 0.00 2.41
1340 2681 4.940654 TCGATCCATTGATGCAGTTTACAA 59.059 37.500 0.00 0.00 0.00 2.41
1564 4271 2.909965 GGCAAGCCCCACGACAAA 60.910 61.111 0.00 0.00 0.00 2.83
1692 4427 4.103943 TCAATCACCGGATCCATTCCAATA 59.896 41.667 9.46 0.00 45.78 1.90
2028 4875 0.794473 GGTTTGGTCGATCGGTTGAC 59.206 55.000 16.41 7.60 37.92 3.18
2119 4992 1.684734 GGAGTGGGACTTCCGGCTA 60.685 63.158 0.00 0.00 38.76 3.93
2291 5164 3.748568 GCTCAACTTCTCCAAAGGTACAG 59.251 47.826 0.00 0.00 0.00 2.74
2326 5240 3.308866 CGATCAATCGGTTGGTTAGTTCC 59.691 47.826 8.88 0.00 45.93 3.62
2327 5241 3.773418 TCAATCGGTTGGTTAGTTCCA 57.227 42.857 8.88 0.00 35.99 3.53
2328 5242 3.670625 TCAATCGGTTGGTTAGTTCCAG 58.329 45.455 8.88 0.00 38.80 3.86
2329 5243 3.071892 TCAATCGGTTGGTTAGTTCCAGT 59.928 43.478 8.88 0.00 38.80 4.00
2333 5248 6.742559 ATCGGTTGGTTAGTTCCAGTATAT 57.257 37.500 0.00 0.00 38.80 0.86
2466 5388 5.048713 ACCACAATTTTTCTACAGCAGTAGC 60.049 40.000 11.22 0.00 45.90 3.58
2530 5517 4.142182 GCATCCTTTGCCTTGTGCTTTATA 60.142 41.667 0.00 0.00 46.15 0.98
2538 5525 3.920412 GCCTTGTGCTTTATACTTGTTGC 59.080 43.478 0.00 0.00 36.87 4.17
2656 5645 5.105432 GGACGTCTAGTTTGTTAGGATCCTT 60.105 44.000 22.03 1.76 0.00 3.36
2675 5665 1.164411 TCTTGTACTTTGCCATGCCG 58.836 50.000 0.00 0.00 0.00 5.69
2759 5749 3.048337 AGCAGCCAATGAACCAATTTG 57.952 42.857 0.00 0.00 0.00 2.32
2866 5856 3.198582 CGGGAGGGAGTCGAGAAC 58.801 66.667 0.00 0.00 0.00 3.01
3091 6081 2.186384 GCTGAGCGCCTCATCACT 59.814 61.111 2.29 0.00 39.92 3.41
3308 6298 1.002366 CCGAGTTCTTCTTCGGCATG 58.998 55.000 0.00 0.00 38.95 4.06
3407 6398 5.296035 GTGCTTAGTTATGTATGTTCCCACC 59.704 44.000 0.00 0.00 0.00 4.61
3408 6399 5.045505 TGCTTAGTTATGTATGTTCCCACCA 60.046 40.000 0.00 0.00 0.00 4.17
3521 6512 1.474330 TCTAAGTGCTCTGCGATCCA 58.526 50.000 0.00 0.00 0.00 3.41
3569 6560 0.535335 ACCGCCGCTGAAGATTCTTA 59.465 50.000 0.00 0.00 0.00 2.10
3608 6599 2.929531 GTCATCTTGACGCTGAGAGA 57.070 50.000 0.00 0.00 37.67 3.10
3613 6604 3.942130 TCTTGACGCTGAGAGATTCAA 57.058 42.857 0.00 0.00 34.81 2.69
3616 6607 3.599730 TGACGCTGAGAGATTCAACAT 57.400 42.857 0.00 0.00 34.81 2.71
3677 6670 4.914983 TCCATCAAGAAGAGAGCATTTGT 58.085 39.130 0.00 0.00 0.00 2.83
3687 6680 3.997021 AGAGAGCATTTGTTGTACTTCCG 59.003 43.478 0.00 0.00 0.00 4.30
3713 6706 3.662290 TGGTGCACCCAACTTATCC 57.338 52.632 32.62 4.42 41.50 2.59
3717 6710 2.514803 GTGCACCCAACTTATCCACTT 58.485 47.619 5.22 0.00 0.00 3.16
3792 6785 6.095160 CCGCTCTTATATTATAAGACGGAGGT 59.905 42.308 32.30 0.00 43.06 3.85
3794 6787 8.121708 CGCTCTTATATTATAAGACGGAGGTAC 58.878 40.741 23.33 0.00 31.27 3.34
3846 6839 9.337091 GAGAAAGACAAATCTAGTATCGATAGC 57.663 37.037 5.09 1.29 33.57 2.97
3902 6899 4.504826 GCATCGTTTTCTTCCTAGAGCTAC 59.495 45.833 0.00 0.00 0.00 3.58
3903 6900 5.651530 CATCGTTTTCTTCCTAGAGCTACA 58.348 41.667 0.00 0.00 0.00 2.74
3906 6903 4.621886 CGTTTTCTTCCTAGAGCTACACAC 59.378 45.833 0.00 0.00 0.00 3.82
3913 6910 3.439476 TCCTAGAGCTACACACGAAGAAC 59.561 47.826 0.00 0.00 0.00 3.01
4033 7030 9.975218 ACTAAATAGTTGACCCAATAGTGAAAT 57.025 29.630 0.00 0.00 31.13 2.17
4071 7068 1.202651 ACACATGCCCGGAGTAATAGC 60.203 52.381 0.73 0.00 0.00 2.97
4090 7087 7.408756 AATAGCACATAAAGCAGAAAATCCA 57.591 32.000 0.00 0.00 0.00 3.41
4122 7119 4.654262 ACCCACTTTCTCTCTTCTTGTGTA 59.346 41.667 0.00 0.00 0.00 2.90
4170 7168 5.913514 AGTAGTAGCAATCATAACTTACGCG 59.086 40.000 3.53 3.53 0.00 6.01
4171 7169 4.049186 AGTAGCAATCATAACTTACGCGG 58.951 43.478 12.47 0.00 0.00 6.46
4172 7170 1.597663 AGCAATCATAACTTACGCGGC 59.402 47.619 12.47 0.00 0.00 6.53
4179 7177 0.029834 TAACTTACGCGGCTCGATCC 59.970 55.000 12.47 0.00 41.67 3.36
4206 7204 2.586079 CGTAGCCATGGGAGCACG 60.586 66.667 15.13 8.17 0.00 5.34
4212 7210 2.438975 CATGGGAGCACGCCACAT 60.439 61.111 0.00 0.00 0.00 3.21
4215 7213 0.034574 ATGGGAGCACGCCACATTTA 60.035 50.000 0.00 0.00 0.00 1.40
4216 7214 0.250945 TGGGAGCACGCCACATTTAA 60.251 50.000 0.00 0.00 0.00 1.52
4217 7215 0.885196 GGGAGCACGCCACATTTAAA 59.115 50.000 0.00 0.00 0.00 1.52
4218 7216 1.271102 GGGAGCACGCCACATTTAAAA 59.729 47.619 0.00 0.00 0.00 1.52
4219 7217 2.288518 GGGAGCACGCCACATTTAAAAA 60.289 45.455 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.445545 CCAAAAGCTCGTCGGCGC 62.446 66.667 3.52 0.00 38.14 6.53
1 2 3.788766 CCCAAAAGCTCGTCGGCG 61.789 66.667 1.15 1.15 37.29 6.46
2 3 4.103103 GCCCAAAAGCTCGTCGGC 62.103 66.667 0.00 0.00 0.00 5.54
3 4 1.079405 TAGCCCAAAAGCTCGTCGG 60.079 57.895 0.00 0.00 43.67 4.79
4 5 1.696832 GCTAGCCCAAAAGCTCGTCG 61.697 60.000 2.29 0.00 43.67 5.12
5 6 0.673644 TGCTAGCCCAAAAGCTCGTC 60.674 55.000 13.29 0.00 43.67 4.20
6 7 0.955919 GTGCTAGCCCAAAAGCTCGT 60.956 55.000 13.29 0.00 43.67 4.18
7 8 1.648467 GGTGCTAGCCCAAAAGCTCG 61.648 60.000 13.29 0.00 43.67 5.03
8 9 2.184323 GGTGCTAGCCCAAAAGCTC 58.816 57.895 13.29 0.00 43.67 4.09
40 41 2.448468 CCGGCAGATACACGAATGACG 61.448 57.143 0.00 0.00 43.75 4.35
41 42 1.209128 CCGGCAGATACACGAATGAC 58.791 55.000 0.00 0.00 0.00 3.06
42 43 0.529773 GCCGGCAGATACACGAATGA 60.530 55.000 24.80 0.00 0.00 2.57
43 44 1.821241 CGCCGGCAGATACACGAATG 61.821 60.000 28.98 0.12 0.00 2.67
44 45 1.591594 CGCCGGCAGATACACGAAT 60.592 57.895 28.98 0.00 0.00 3.34
45 46 2.202690 CGCCGGCAGATACACGAA 60.203 61.111 28.98 0.00 0.00 3.85
46 47 4.201679 CCGCCGGCAGATACACGA 62.202 66.667 28.98 0.00 0.00 4.35
47 48 4.201679 TCCGCCGGCAGATACACG 62.202 66.667 28.98 7.02 0.00 4.49
48 49 2.585247 GTCCGCCGGCAGATACAC 60.585 66.667 28.98 5.23 0.00 2.90
49 50 3.845259 GGTCCGCCGGCAGATACA 61.845 66.667 28.98 0.00 0.00 2.29
50 51 3.845259 TGGTCCGCCGGCAGATAC 61.845 66.667 28.98 17.84 37.67 2.24
51 52 3.845259 GTGGTCCGCCGGCAGATA 61.845 66.667 28.98 11.39 37.67 1.98
67 68 3.506108 CGGATCTACACCGTCGGT 58.494 61.111 12.23 12.23 44.57 4.69
73 74 2.812591 TCTTATCGCTCGGATCTACACC 59.187 50.000 0.00 0.00 36.55 4.16
74 75 3.120130 CCTCTTATCGCTCGGATCTACAC 60.120 52.174 0.00 0.00 36.55 2.90
75 76 3.075148 CCTCTTATCGCTCGGATCTACA 58.925 50.000 0.00 0.00 36.55 2.74
76 77 3.336468 TCCTCTTATCGCTCGGATCTAC 58.664 50.000 0.00 0.00 36.55 2.59
77 78 3.601435 CTCCTCTTATCGCTCGGATCTA 58.399 50.000 0.00 0.00 36.55 1.98
78 79 2.432444 CTCCTCTTATCGCTCGGATCT 58.568 52.381 0.00 0.00 36.55 2.75
79 80 1.470890 CCTCCTCTTATCGCTCGGATC 59.529 57.143 0.00 0.00 36.55 3.36
80 81 1.074084 TCCTCCTCTTATCGCTCGGAT 59.926 52.381 0.00 0.00 39.25 4.18
81 82 0.472898 TCCTCCTCTTATCGCTCGGA 59.527 55.000 0.00 0.00 0.00 4.55
82 83 0.878416 CTCCTCCTCTTATCGCTCGG 59.122 60.000 0.00 0.00 0.00 4.63
83 84 0.239879 GCTCCTCCTCTTATCGCTCG 59.760 60.000 0.00 0.00 0.00 5.03
84 85 0.601057 GGCTCCTCCTCTTATCGCTC 59.399 60.000 0.00 0.00 0.00 5.03
85 86 0.105964 TGGCTCCTCCTCTTATCGCT 60.106 55.000 0.00 0.00 35.26 4.93
86 87 0.032815 GTGGCTCCTCCTCTTATCGC 59.967 60.000 0.00 0.00 35.26 4.58
87 88 1.339610 CAGTGGCTCCTCCTCTTATCG 59.660 57.143 0.00 0.00 36.59 2.92
88 89 1.069978 GCAGTGGCTCCTCCTCTTATC 59.930 57.143 0.00 0.00 36.59 1.75
89 90 1.127343 GCAGTGGCTCCTCCTCTTAT 58.873 55.000 0.00 0.00 36.59 1.73
90 91 0.978146 GGCAGTGGCTCCTCCTCTTA 60.978 60.000 9.90 0.00 36.59 2.10
91 92 2.297129 GGCAGTGGCTCCTCCTCTT 61.297 63.158 9.90 0.00 36.59 2.85
92 93 1.879927 TAGGCAGTGGCTCCTCCTCT 61.880 60.000 24.23 0.00 39.70 3.69
93 94 1.381872 TAGGCAGTGGCTCCTCCTC 60.382 63.158 24.23 0.00 39.70 3.71
94 95 1.687493 GTAGGCAGTGGCTCCTCCT 60.687 63.158 24.23 6.20 39.70 3.69
95 96 1.341156 ATGTAGGCAGTGGCTCCTCC 61.341 60.000 24.23 10.21 39.70 4.30
96 97 0.179062 CATGTAGGCAGTGGCTCCTC 60.179 60.000 24.23 14.82 39.70 3.71
97 98 0.911525 ACATGTAGGCAGTGGCTCCT 60.912 55.000 24.23 7.80 39.70 3.69
98 99 0.745845 CACATGTAGGCAGTGGCTCC 60.746 60.000 24.23 12.98 39.70 4.70
99 100 0.745845 CCACATGTAGGCAGTGGCTC 60.746 60.000 24.23 14.86 45.39 4.70
100 101 1.300963 CCACATGTAGGCAGTGGCT 59.699 57.895 23.98 23.98 45.39 4.75
101 102 3.909662 CCACATGTAGGCAGTGGC 58.090 61.111 9.02 9.02 45.39 5.01
108 109 3.501396 CGCAAGGCCACATGTAGG 58.499 61.111 5.01 3.87 0.00 3.18
135 136 2.438434 CACCATGTCGGAAGGCCC 60.438 66.667 0.00 0.00 38.63 5.80
136 137 3.134127 GCACCATGTCGGAAGGCC 61.134 66.667 0.00 0.00 38.63 5.19
137 138 3.134127 GGCACCATGTCGGAAGGC 61.134 66.667 0.00 0.00 38.63 4.35
184 185 2.890847 CTAGAGCTCGCCCGGTTGTG 62.891 65.000 8.37 0.00 0.00 3.33
185 186 2.678934 TAGAGCTCGCCCGGTTGT 60.679 61.111 8.37 0.00 0.00 3.32
186 187 2.105128 CTAGAGCTCGCCCGGTTG 59.895 66.667 8.37 0.00 0.00 3.77
187 188 2.044252 TCTAGAGCTCGCCCGGTT 60.044 61.111 8.37 0.00 0.00 4.44
188 189 2.829458 GTCTAGAGCTCGCCCGGT 60.829 66.667 8.37 0.00 0.00 5.28
189 190 3.597728 GGTCTAGAGCTCGCCCGG 61.598 72.222 14.73 0.00 0.00 5.73
190 191 3.955101 CGGTCTAGAGCTCGCCCG 61.955 72.222 19.17 17.53 0.00 6.13
191 192 2.516460 TCGGTCTAGAGCTCGCCC 60.516 66.667 19.17 6.04 0.00 6.13
192 193 2.716864 GTCGGTCTAGAGCTCGCC 59.283 66.667 19.17 8.66 0.00 5.54
193 194 2.716864 GGTCGGTCTAGAGCTCGC 59.283 66.667 19.17 9.05 35.89 5.03
194 195 2.535788 CCGGTCGGTCTAGAGCTCG 61.536 68.421 19.17 17.69 36.57 5.03
195 196 0.535553 ATCCGGTCGGTCTAGAGCTC 60.536 60.000 19.17 5.27 36.57 4.09
196 197 0.106619 AATCCGGTCGGTCTAGAGCT 60.107 55.000 19.17 0.00 36.57 4.09
197 198 0.311477 GAATCCGGTCGGTCTAGAGC 59.689 60.000 12.04 12.04 36.47 4.09
198 199 0.587285 CGAATCCGGTCGGTCTAGAG 59.413 60.000 9.36 0.00 37.37 2.43
199 200 1.442526 GCGAATCCGGTCGGTCTAGA 61.443 60.000 15.38 0.00 41.40 2.43
200 201 1.008767 GCGAATCCGGTCGGTCTAG 60.009 63.158 15.38 2.04 41.40 2.43
201 202 2.484062 GGCGAATCCGGTCGGTCTA 61.484 63.158 15.38 0.00 41.40 2.59
202 203 3.834799 GGCGAATCCGGTCGGTCT 61.835 66.667 15.38 0.00 41.40 3.85
203 204 4.886121 GGGCGAATCCGGTCGGTC 62.886 72.222 15.38 0.78 41.40 4.79
206 207 3.961838 TTTGGGGCGAATCCGGTCG 62.962 63.158 9.95 9.95 43.98 4.79
207 208 1.444917 GATTTGGGGCGAATCCGGTC 61.445 60.000 0.00 0.00 36.06 4.79
208 209 1.453197 GATTTGGGGCGAATCCGGT 60.453 57.895 0.00 0.00 36.06 5.28
209 210 2.193536 GGATTTGGGGCGAATCCGG 61.194 63.158 0.00 0.00 42.39 5.14
210 211 3.432186 GGATTTGGGGCGAATCCG 58.568 61.111 9.26 0.00 42.39 4.18
211 212 2.193536 CCGGATTTGGGGCGAATCC 61.194 63.158 0.00 13.02 45.96 3.01
212 213 2.845550 GCCGGATTTGGGGCGAATC 61.846 63.158 5.05 0.00 39.93 2.52
213 214 2.833121 GCCGGATTTGGGGCGAAT 60.833 61.111 5.05 0.00 39.93 3.34
234 235 1.442520 CACCTGATTTGCGCAACCG 60.443 57.895 24.99 8.78 37.57 4.44
235 236 1.080569 CCACCTGATTTGCGCAACC 60.081 57.895 24.99 17.95 0.00 3.77
236 237 1.734117 GCCACCTGATTTGCGCAAC 60.734 57.895 24.99 13.41 0.00 4.17
237 238 2.650196 GCCACCTGATTTGCGCAA 59.350 55.556 21.02 21.02 0.00 4.85
238 239 3.372730 GGCCACCTGATTTGCGCA 61.373 61.111 5.66 5.66 0.00 6.09
239 240 4.481112 CGGCCACCTGATTTGCGC 62.481 66.667 2.24 0.00 0.00 6.09
240 241 3.055719 ACGGCCACCTGATTTGCG 61.056 61.111 2.24 0.00 0.00 4.85
241 242 2.568090 CACGGCCACCTGATTTGC 59.432 61.111 2.24 0.00 0.00 3.68
242 243 1.178534 AACCACGGCCACCTGATTTG 61.179 55.000 2.24 0.00 0.00 2.32
243 244 1.152830 AACCACGGCCACCTGATTT 59.847 52.632 2.24 0.00 0.00 2.17
244 245 1.603455 CAACCACGGCCACCTGATT 60.603 57.895 2.24 0.00 0.00 2.57
245 246 2.034066 CAACCACGGCCACCTGAT 59.966 61.111 2.24 0.00 0.00 2.90
246 247 4.263572 CCAACCACGGCCACCTGA 62.264 66.667 2.24 0.00 0.00 3.86
249 250 3.912745 CTACCCAACCACGGCCACC 62.913 68.421 2.24 0.00 0.00 4.61
250 251 2.359478 CTACCCAACCACGGCCAC 60.359 66.667 2.24 0.00 0.00 5.01
251 252 4.338710 GCTACCCAACCACGGCCA 62.339 66.667 2.24 0.00 0.00 5.36
252 253 3.971109 GAGCTACCCAACCACGGCC 62.971 68.421 0.00 0.00 0.00 6.13
253 254 2.436115 GAGCTACCCAACCACGGC 60.436 66.667 0.00 0.00 0.00 5.68
254 255 2.125673 CGAGCTACCCAACCACGG 60.126 66.667 0.00 0.00 0.00 4.94
255 256 2.125673 CCGAGCTACCCAACCACG 60.126 66.667 0.00 0.00 0.00 4.94
256 257 2.267961 CCCGAGCTACCCAACCAC 59.732 66.667 0.00 0.00 0.00 4.16
257 258 3.006728 CCCCGAGCTACCCAACCA 61.007 66.667 0.00 0.00 0.00 3.67
258 259 3.793888 CCCCCGAGCTACCCAACC 61.794 72.222 0.00 0.00 0.00 3.77
259 260 4.484872 GCCCCCGAGCTACCCAAC 62.485 72.222 0.00 0.00 0.00 3.77
276 277 4.016706 AACACCTTCCCCTCGGCG 62.017 66.667 0.00 0.00 0.00 6.46
277 278 2.359975 CAACACCTTCCCCTCGGC 60.360 66.667 0.00 0.00 0.00 5.54
278 279 2.351276 CCAACACCTTCCCCTCGG 59.649 66.667 0.00 0.00 0.00 4.63
279 280 2.351276 CCCAACACCTTCCCCTCG 59.649 66.667 0.00 0.00 0.00 4.63
280 281 2.035783 GCCCAACACCTTCCCCTC 59.964 66.667 0.00 0.00 0.00 4.30
281 282 3.966543 CGCCCAACACCTTCCCCT 61.967 66.667 0.00 0.00 0.00 4.79
282 283 3.920093 CTCGCCCAACACCTTCCCC 62.920 68.421 0.00 0.00 0.00 4.81
283 284 2.359975 CTCGCCCAACACCTTCCC 60.360 66.667 0.00 0.00 0.00 3.97
284 285 3.056328 GCTCGCCCAACACCTTCC 61.056 66.667 0.00 0.00 0.00 3.46
285 286 3.423154 CGCTCGCCCAACACCTTC 61.423 66.667 0.00 0.00 0.00 3.46
307 308 3.631487 GATTTGTGCACCCGCTGGC 62.631 63.158 15.69 0.00 39.64 4.85
308 309 1.804396 TTGATTTGTGCACCCGCTGG 61.804 55.000 15.69 0.00 39.64 4.85
309 310 0.244450 ATTGATTTGTGCACCCGCTG 59.756 50.000 15.69 0.00 39.64 5.18
310 311 0.244450 CATTGATTTGTGCACCCGCT 59.756 50.000 15.69 0.00 39.64 5.52
311 312 0.243365 TCATTGATTTGTGCACCCGC 59.757 50.000 15.69 1.65 39.24 6.13
312 313 1.269174 TGTCATTGATTTGTGCACCCG 59.731 47.619 15.69 0.00 0.00 5.28
313 314 2.927871 GCTGTCATTGATTTGTGCACCC 60.928 50.000 15.69 1.47 0.00 4.61
314 315 2.331194 GCTGTCATTGATTTGTGCACC 58.669 47.619 15.69 0.00 0.00 5.01
315 316 1.980844 CGCTGTCATTGATTTGTGCAC 59.019 47.619 10.75 10.75 0.00 4.57
316 317 1.068402 CCGCTGTCATTGATTTGTGCA 60.068 47.619 0.00 0.00 0.00 4.57
317 318 1.621107 CCGCTGTCATTGATTTGTGC 58.379 50.000 0.00 0.00 0.00 4.57
318 319 1.621107 GCCGCTGTCATTGATTTGTG 58.379 50.000 0.00 0.00 0.00 3.33
319 320 0.168788 CGCCGCTGTCATTGATTTGT 59.831 50.000 0.00 0.00 0.00 2.83
320 321 0.523968 CCGCCGCTGTCATTGATTTG 60.524 55.000 0.00 0.00 0.00 2.32
321 322 1.802636 CCGCCGCTGTCATTGATTT 59.197 52.632 0.00 0.00 0.00 2.17
322 323 2.764314 GCCGCCGCTGTCATTGATT 61.764 57.895 0.00 0.00 0.00 2.57
323 324 3.204827 GCCGCCGCTGTCATTGAT 61.205 61.111 0.00 0.00 0.00 2.57
340 341 3.997064 CTCACTCTTGCCCTCGCCG 62.997 68.421 0.00 0.00 0.00 6.46
341 342 2.125350 CTCACTCTTGCCCTCGCC 60.125 66.667 0.00 0.00 0.00 5.54
342 343 2.125350 CCTCACTCTTGCCCTCGC 60.125 66.667 0.00 0.00 0.00 5.03
343 344 0.108424 CTTCCTCACTCTTGCCCTCG 60.108 60.000 0.00 0.00 0.00 4.63
344 345 1.206849 CTCTTCCTCACTCTTGCCCTC 59.793 57.143 0.00 0.00 0.00 4.30
345 346 1.274712 CTCTTCCTCACTCTTGCCCT 58.725 55.000 0.00 0.00 0.00 5.19
346 347 0.980423 ACTCTTCCTCACTCTTGCCC 59.020 55.000 0.00 0.00 0.00 5.36
347 348 1.338579 CCACTCTTCCTCACTCTTGCC 60.339 57.143 0.00 0.00 0.00 4.52
348 349 1.620819 TCCACTCTTCCTCACTCTTGC 59.379 52.381 0.00 0.00 0.00 4.01
349 350 3.161067 TCTCCACTCTTCCTCACTCTTG 58.839 50.000 0.00 0.00 0.00 3.02
350 351 3.534357 TCTCCACTCTTCCTCACTCTT 57.466 47.619 0.00 0.00 0.00 2.85
351 352 3.534357 TTCTCCACTCTTCCTCACTCT 57.466 47.619 0.00 0.00 0.00 3.24
352 353 4.039852 ACTTTTCTCCACTCTTCCTCACTC 59.960 45.833 0.00 0.00 0.00 3.51
353 354 3.970640 ACTTTTCTCCACTCTTCCTCACT 59.029 43.478 0.00 0.00 0.00 3.41
354 355 4.061596 CACTTTTCTCCACTCTTCCTCAC 58.938 47.826 0.00 0.00 0.00 3.51
355 356 3.071602 CCACTTTTCTCCACTCTTCCTCA 59.928 47.826 0.00 0.00 0.00 3.86
356 357 3.325135 TCCACTTTTCTCCACTCTTCCTC 59.675 47.826 0.00 0.00 0.00 3.71
357 358 3.318313 TCCACTTTTCTCCACTCTTCCT 58.682 45.455 0.00 0.00 0.00 3.36
358 359 3.325135 TCTCCACTTTTCTCCACTCTTCC 59.675 47.826 0.00 0.00 0.00 3.46
359 360 4.562552 CCTCTCCACTTTTCTCCACTCTTC 60.563 50.000 0.00 0.00 0.00 2.87
360 361 3.326297 CCTCTCCACTTTTCTCCACTCTT 59.674 47.826 0.00 0.00 0.00 2.85
361 362 2.903135 CCTCTCCACTTTTCTCCACTCT 59.097 50.000 0.00 0.00 0.00 3.24
362 363 2.027653 CCCTCTCCACTTTTCTCCACTC 60.028 54.545 0.00 0.00 0.00 3.51
363 364 1.981495 CCCTCTCCACTTTTCTCCACT 59.019 52.381 0.00 0.00 0.00 4.00
364 365 1.700186 ACCCTCTCCACTTTTCTCCAC 59.300 52.381 0.00 0.00 0.00 4.02
365 366 1.699634 CACCCTCTCCACTTTTCTCCA 59.300 52.381 0.00 0.00 0.00 3.86
366 367 1.611936 GCACCCTCTCCACTTTTCTCC 60.612 57.143 0.00 0.00 0.00 3.71
367 368 1.814793 GCACCCTCTCCACTTTTCTC 58.185 55.000 0.00 0.00 0.00 2.87
368 369 0.035458 CGCACCCTCTCCACTTTTCT 59.965 55.000 0.00 0.00 0.00 2.52
369 370 0.955919 CCGCACCCTCTCCACTTTTC 60.956 60.000 0.00 0.00 0.00 2.29
370 371 1.073199 CCGCACCCTCTCCACTTTT 59.927 57.895 0.00 0.00 0.00 2.27
371 372 2.750350 CCGCACCCTCTCCACTTT 59.250 61.111 0.00 0.00 0.00 2.66
372 373 4.021925 GCCGCACCCTCTCCACTT 62.022 66.667 0.00 0.00 0.00 3.16
393 394 4.250170 TATCCGCCCCTCCCTCCC 62.250 72.222 0.00 0.00 0.00 4.30
394 395 2.604991 CTATCCGCCCCTCCCTCC 60.605 72.222 0.00 0.00 0.00 4.30
395 396 0.763223 TTTCTATCCGCCCCTCCCTC 60.763 60.000 0.00 0.00 0.00 4.30
396 397 0.327191 TTTTCTATCCGCCCCTCCCT 60.327 55.000 0.00 0.00 0.00 4.20
397 398 0.549469 TTTTTCTATCCGCCCCTCCC 59.451 55.000 0.00 0.00 0.00 4.30
398 399 1.489230 TCTTTTTCTATCCGCCCCTCC 59.511 52.381 0.00 0.00 0.00 4.30
399 400 2.093128 TGTCTTTTTCTATCCGCCCCTC 60.093 50.000 0.00 0.00 0.00 4.30
400 401 1.913419 TGTCTTTTTCTATCCGCCCCT 59.087 47.619 0.00 0.00 0.00 4.79
401 402 2.014857 GTGTCTTTTTCTATCCGCCCC 58.985 52.381 0.00 0.00 0.00 5.80
402 403 2.014857 GGTGTCTTTTTCTATCCGCCC 58.985 52.381 0.00 0.00 0.00 6.13
403 404 2.014857 GGGTGTCTTTTTCTATCCGCC 58.985 52.381 0.00 0.00 0.00 6.13
404 405 2.014857 GGGGTGTCTTTTTCTATCCGC 58.985 52.381 0.00 0.00 0.00 5.54
405 406 3.629142 AGGGGTGTCTTTTTCTATCCG 57.371 47.619 0.00 0.00 0.00 4.18
406 407 5.622180 GGATAGGGGTGTCTTTTTCTATCC 58.378 45.833 10.28 10.28 43.02 2.59
407 408 5.298347 CGGATAGGGGTGTCTTTTTCTATC 58.702 45.833 0.00 0.00 34.98 2.08
408 409 4.444449 GCGGATAGGGGTGTCTTTTTCTAT 60.444 45.833 0.00 0.00 0.00 1.98
409 410 3.118519 GCGGATAGGGGTGTCTTTTTCTA 60.119 47.826 0.00 0.00 0.00 2.10
410 411 2.355818 GCGGATAGGGGTGTCTTTTTCT 60.356 50.000 0.00 0.00 0.00 2.52
411 412 2.014857 GCGGATAGGGGTGTCTTTTTC 58.985 52.381 0.00 0.00 0.00 2.29
412 413 1.677820 CGCGGATAGGGGTGTCTTTTT 60.678 52.381 0.00 0.00 0.00 1.94
413 414 0.107848 CGCGGATAGGGGTGTCTTTT 60.108 55.000 0.00 0.00 0.00 2.27
414 415 1.262640 ACGCGGATAGGGGTGTCTTT 61.263 55.000 12.47 0.00 37.07 2.52
415 416 1.684734 ACGCGGATAGGGGTGTCTT 60.685 57.895 12.47 0.00 37.07 3.01
416 417 2.043248 ACGCGGATAGGGGTGTCT 60.043 61.111 12.47 0.00 37.07 3.41
417 418 2.106332 CACGCGGATAGGGGTGTC 59.894 66.667 12.47 0.00 43.51 3.67
420 421 1.745320 GACATCACGCGGATAGGGGT 61.745 60.000 12.47 4.64 33.95 4.95
421 422 1.006102 GACATCACGCGGATAGGGG 60.006 63.158 12.47 1.38 33.95 4.79
422 423 1.006102 GGACATCACGCGGATAGGG 60.006 63.158 12.47 1.73 33.95 3.53
423 424 1.371758 CGGACATCACGCGGATAGG 60.372 63.158 12.47 0.00 33.95 2.57
424 425 0.248907 AACGGACATCACGCGGATAG 60.249 55.000 12.47 8.00 33.95 2.08
425 426 0.173935 AAACGGACATCACGCGGATA 59.826 50.000 12.47 0.00 33.95 2.59
426 427 1.079405 AAACGGACATCACGCGGAT 60.079 52.632 12.47 7.73 36.39 4.18
427 428 1.735198 GAAACGGACATCACGCGGA 60.735 57.895 12.47 5.24 34.00 5.54
428 429 2.024868 TGAAACGGACATCACGCGG 61.025 57.895 12.47 0.00 34.00 6.46
429 430 1.129809 GTGAAACGGACATCACGCG 59.870 57.895 3.53 3.53 36.89 6.01
430 431 1.495951 GGTGAAACGGACATCACGC 59.504 57.895 0.00 0.00 45.39 5.34
431 432 1.296056 GGGGTGAAACGGACATCACG 61.296 60.000 0.00 0.00 45.39 4.35
432 433 0.250553 TGGGGTGAAACGGACATCAC 60.251 55.000 0.00 0.00 44.07 3.06
433 434 0.474614 TTGGGGTGAAACGGACATCA 59.525 50.000 0.00 0.00 38.12 3.07
434 435 1.611519 TTTGGGGTGAAACGGACATC 58.388 50.000 0.00 0.00 38.12 3.06
435 436 2.074729 TTTTGGGGTGAAACGGACAT 57.925 45.000 0.00 0.00 38.12 3.06
436 437 1.477295 GTTTTTGGGGTGAAACGGACA 59.523 47.619 0.00 0.00 38.12 4.02
437 438 2.212869 GTTTTTGGGGTGAAACGGAC 57.787 50.000 0.00 0.00 38.12 4.79
441 442 0.872451 CGCCGTTTTTGGGGTGAAAC 60.872 55.000 0.00 0.00 37.20 2.78
442 443 1.437986 CGCCGTTTTTGGGGTGAAA 59.562 52.632 0.00 0.00 37.20 2.69
443 444 3.121019 CGCCGTTTTTGGGGTGAA 58.879 55.556 0.00 0.00 37.20 3.18
444 445 3.597728 GCGCCGTTTTTGGGGTGA 61.598 61.111 0.00 0.00 43.50 4.02
445 446 2.907897 TTTGCGCCGTTTTTGGGGTG 62.908 55.000 4.18 0.00 43.50 4.61
446 447 2.722201 TTTGCGCCGTTTTTGGGGT 61.722 52.632 4.18 0.00 43.50 4.95
447 448 2.107141 TTTGCGCCGTTTTTGGGG 59.893 55.556 4.18 0.00 44.36 4.96
448 449 0.808060 AAGTTTGCGCCGTTTTTGGG 60.808 50.000 4.18 0.00 0.00 4.12
449 450 0.300193 CAAGTTTGCGCCGTTTTTGG 59.700 50.000 4.18 0.00 0.00 3.28
450 451 1.255084 CTCAAGTTTGCGCCGTTTTTG 59.745 47.619 4.18 3.63 0.00 2.44
451 452 1.555477 CTCAAGTTTGCGCCGTTTTT 58.445 45.000 4.18 0.00 0.00 1.94
452 453 0.869880 GCTCAAGTTTGCGCCGTTTT 60.870 50.000 4.18 0.00 33.03 2.43
453 454 1.299089 GCTCAAGTTTGCGCCGTTT 60.299 52.632 4.18 0.00 33.03 3.60
454 455 2.331451 GCTCAAGTTTGCGCCGTT 59.669 55.556 4.18 0.00 33.03 4.44
458 459 4.404654 CCCGGCTCAAGTTTGCGC 62.405 66.667 0.00 0.00 38.13 6.09
459 460 2.040544 ATCCCGGCTCAAGTTTGCG 61.041 57.895 0.00 0.00 0.00 4.85
460 461 0.960364 TCATCCCGGCTCAAGTTTGC 60.960 55.000 0.00 0.00 0.00 3.68
461 462 1.089920 CTCATCCCGGCTCAAGTTTG 58.910 55.000 0.00 0.00 0.00 2.93
462 463 0.693049 ACTCATCCCGGCTCAAGTTT 59.307 50.000 0.00 0.00 0.00 2.66
463 464 0.250513 GACTCATCCCGGCTCAAGTT 59.749 55.000 0.00 0.00 0.00 2.66
464 465 0.904865 TGACTCATCCCGGCTCAAGT 60.905 55.000 0.00 0.00 0.00 3.16
465 466 0.250234 TTGACTCATCCCGGCTCAAG 59.750 55.000 0.00 0.00 0.00 3.02
466 467 0.690192 TTTGACTCATCCCGGCTCAA 59.310 50.000 0.00 0.00 0.00 3.02
467 468 0.690192 TTTTGACTCATCCCGGCTCA 59.310 50.000 0.00 0.00 0.00 4.26
468 469 1.373570 CTTTTGACTCATCCCGGCTC 58.626 55.000 0.00 0.00 0.00 4.70
469 470 0.678048 GCTTTTGACTCATCCCGGCT 60.678 55.000 0.00 0.00 0.00 5.52
470 471 0.960364 TGCTTTTGACTCATCCCGGC 60.960 55.000 0.00 0.00 0.00 6.13
471 472 1.089920 CTGCTTTTGACTCATCCCGG 58.910 55.000 0.00 0.00 0.00 5.73
472 473 2.099141 TCTGCTTTTGACTCATCCCG 57.901 50.000 0.00 0.00 0.00 5.14
473 474 4.074970 TCTTTCTGCTTTTGACTCATCCC 58.925 43.478 0.00 0.00 0.00 3.85
474 475 5.695851 TTCTTTCTGCTTTTGACTCATCC 57.304 39.130 0.00 0.00 0.00 3.51
475 476 6.974622 TGTTTTCTTTCTGCTTTTGACTCATC 59.025 34.615 0.00 0.00 0.00 2.92
476 477 6.866480 TGTTTTCTTTCTGCTTTTGACTCAT 58.134 32.000 0.00 0.00 0.00 2.90
477 478 6.150976 TCTGTTTTCTTTCTGCTTTTGACTCA 59.849 34.615 0.00 0.00 0.00 3.41
478 479 6.470556 GTCTGTTTTCTTTCTGCTTTTGACTC 59.529 38.462 0.00 0.00 0.00 3.36
479 480 6.071952 TGTCTGTTTTCTTTCTGCTTTTGACT 60.072 34.615 0.00 0.00 0.00 3.41
480 481 6.092748 TGTCTGTTTTCTTTCTGCTTTTGAC 58.907 36.000 0.00 0.00 0.00 3.18
481 482 6.266168 TGTCTGTTTTCTTTCTGCTTTTGA 57.734 33.333 0.00 0.00 0.00 2.69
482 483 6.949578 TTGTCTGTTTTCTTTCTGCTTTTG 57.050 33.333 0.00 0.00 0.00 2.44
483 484 7.657354 ACTTTTGTCTGTTTTCTTTCTGCTTTT 59.343 29.630 0.00 0.00 0.00 2.27
484 485 7.154656 ACTTTTGTCTGTTTTCTTTCTGCTTT 58.845 30.769 0.00 0.00 0.00 3.51
485 486 6.691508 ACTTTTGTCTGTTTTCTTTCTGCTT 58.308 32.000 0.00 0.00 0.00 3.91
486 487 6.272822 ACTTTTGTCTGTTTTCTTTCTGCT 57.727 33.333 0.00 0.00 0.00 4.24
487 488 6.560493 GACTTTTGTCTGTTTTCTTTCTGC 57.440 37.500 0.00 0.00 45.55 4.26
502 503 1.065109 GGCGCAAACGGACTTTTGT 59.935 52.632 10.83 0.00 38.51 2.83
503 504 0.934436 CAGGCGCAAACGGACTTTTG 60.934 55.000 10.83 0.00 40.57 2.44
504 505 1.358759 CAGGCGCAAACGGACTTTT 59.641 52.632 10.83 0.00 40.57 2.27
505 506 3.030652 CAGGCGCAAACGGACTTT 58.969 55.556 10.83 0.00 40.57 2.66
506 507 3.660111 GCAGGCGCAAACGGACTT 61.660 61.111 10.83 0.00 40.57 3.01
523 524 2.527547 GAATCAAACGGCCCAGCGTG 62.528 60.000 0.00 0.00 0.00 5.34
524 525 2.282180 AATCAAACGGCCCAGCGT 60.282 55.556 0.00 0.00 0.00 5.07
525 526 2.485122 GAATCAAACGGCCCAGCG 59.515 61.111 0.00 0.00 0.00 5.18
526 527 1.862602 AACGAATCAAACGGCCCAGC 61.863 55.000 0.00 0.00 34.93 4.85
527 528 0.168128 GAACGAATCAAACGGCCCAG 59.832 55.000 0.00 0.00 34.93 4.45
528 529 1.570347 CGAACGAATCAAACGGCCCA 61.570 55.000 0.00 0.00 34.93 5.36
529 530 1.133869 CGAACGAATCAAACGGCCC 59.866 57.895 0.00 0.00 34.93 5.80
530 531 0.236449 AACGAACGAATCAAACGGCC 59.764 50.000 0.14 0.00 34.93 6.13
531 532 2.026915 AAACGAACGAATCAAACGGC 57.973 45.000 0.14 0.00 34.93 5.68
532 533 4.764940 AGTAAAACGAACGAATCAAACGG 58.235 39.130 0.14 0.00 34.93 4.44
533 534 4.837050 GGAGTAAAACGAACGAATCAAACG 59.163 41.667 0.14 0.00 0.00 3.60
534 535 5.740406 TGGAGTAAAACGAACGAATCAAAC 58.260 37.500 0.14 0.00 0.00 2.93
535 536 5.987777 TGGAGTAAAACGAACGAATCAAA 57.012 34.783 0.14 0.00 0.00 2.69
536 537 5.987777 TTGGAGTAAAACGAACGAATCAA 57.012 34.783 0.14 0.00 0.00 2.57
537 538 5.293814 TGTTTGGAGTAAAACGAACGAATCA 59.706 36.000 0.14 0.00 41.92 2.57
538 539 5.740406 TGTTTGGAGTAAAACGAACGAATC 58.260 37.500 0.14 0.00 41.92 2.52
539 540 5.524646 TCTGTTTGGAGTAAAACGAACGAAT 59.475 36.000 0.14 0.00 41.92 3.34
540 541 4.869297 TCTGTTTGGAGTAAAACGAACGAA 59.131 37.500 0.14 0.00 41.92 3.85
541 542 4.268405 GTCTGTTTGGAGTAAAACGAACGA 59.732 41.667 0.14 0.00 41.92 3.85
542 543 4.511734 GTCTGTTTGGAGTAAAACGAACG 58.488 43.478 0.00 0.00 41.92 3.95
543 544 4.268405 TCGTCTGTTTGGAGTAAAACGAAC 59.732 41.667 0.00 0.00 41.92 3.95
544 545 4.431809 TCGTCTGTTTGGAGTAAAACGAA 58.568 39.130 0.00 0.00 41.92 3.85
545 546 4.044336 TCGTCTGTTTGGAGTAAAACGA 57.956 40.909 0.00 0.00 41.92 3.85
546 547 4.511734 GTTCGTCTGTTTGGAGTAAAACG 58.488 43.478 0.00 0.00 41.92 3.60
547 548 4.511734 CGTTCGTCTGTTTGGAGTAAAAC 58.488 43.478 0.00 0.00 39.90 2.43
548 549 3.001533 GCGTTCGTCTGTTTGGAGTAAAA 59.998 43.478 0.00 0.00 0.00 1.52
549 550 2.540931 GCGTTCGTCTGTTTGGAGTAAA 59.459 45.455 0.00 0.00 0.00 2.01
550 551 2.129607 GCGTTCGTCTGTTTGGAGTAA 58.870 47.619 0.00 0.00 0.00 2.24
551 552 1.774639 GCGTTCGTCTGTTTGGAGTA 58.225 50.000 0.00 0.00 0.00 2.59
552 553 1.213094 CGCGTTCGTCTGTTTGGAGT 61.213 55.000 0.00 0.00 0.00 3.85
553 554 1.487231 CGCGTTCGTCTGTTTGGAG 59.513 57.895 0.00 0.00 0.00 3.86
554 555 1.952133 CCGCGTTCGTCTGTTTGGA 60.952 57.895 4.92 0.00 0.00 3.53
555 556 1.952133 TCCGCGTTCGTCTGTTTGG 60.952 57.895 4.92 0.00 0.00 3.28
556 557 1.200839 GTCCGCGTTCGTCTGTTTG 59.799 57.895 4.92 0.00 0.00 2.93
557 558 1.213094 CTGTCCGCGTTCGTCTGTTT 61.213 55.000 4.92 0.00 0.00 2.83
558 559 1.660575 CTGTCCGCGTTCGTCTGTT 60.661 57.895 4.92 0.00 0.00 3.16
559 560 2.050351 CTGTCCGCGTTCGTCTGT 60.050 61.111 4.92 0.00 0.00 3.41
560 561 2.543687 ATCCTGTCCGCGTTCGTCTG 62.544 60.000 4.92 0.00 0.00 3.51
561 562 2.341101 ATCCTGTCCGCGTTCGTCT 61.341 57.895 4.92 0.00 0.00 4.18
562 563 2.158959 CATCCTGTCCGCGTTCGTC 61.159 63.158 4.92 0.00 0.00 4.20
563 564 2.126071 CATCCTGTCCGCGTTCGT 60.126 61.111 4.92 0.00 0.00 3.85
564 565 2.885644 CCATCCTGTCCGCGTTCG 60.886 66.667 4.92 0.00 0.00 3.95
565 566 2.511600 CCCATCCTGTCCGCGTTC 60.512 66.667 4.92 0.00 0.00 3.95
566 567 3.310860 GACCCATCCTGTCCGCGTT 62.311 63.158 4.92 0.00 0.00 4.84
567 568 3.771160 GACCCATCCTGTCCGCGT 61.771 66.667 4.92 0.00 0.00 6.01
568 569 4.873129 CGACCCATCCTGTCCGCG 62.873 72.222 0.00 0.00 0.00 6.46
570 571 4.873129 CGCGACCCATCCTGTCCG 62.873 72.222 0.00 0.00 0.00 4.79
574 575 4.592192 ATCGCGCGACCCATCCTG 62.592 66.667 37.37 0.00 0.00 3.86
575 576 4.592192 CATCGCGCGACCCATCCT 62.592 66.667 37.37 15.27 0.00 3.24
577 578 4.585526 TCCATCGCGCGACCCATC 62.586 66.667 37.37 0.00 0.00 3.51
578 579 4.592192 CTCCATCGCGCGACCCAT 62.592 66.667 37.37 17.50 0.00 4.00
580 581 4.814294 AACTCCATCGCGCGACCC 62.814 66.667 37.37 0.00 0.00 4.46
581 582 3.554692 CAACTCCATCGCGCGACC 61.555 66.667 37.37 0.00 0.00 4.79
582 583 4.210304 GCAACTCCATCGCGCGAC 62.210 66.667 37.37 16.31 0.00 5.19
588 589 1.638467 GCTTAGCGCAACTCCATCG 59.362 57.895 11.47 0.00 38.92 3.84
609 610 1.154035 GGAAAACGCAATGCCGGAG 60.154 57.895 5.05 0.00 0.00 4.63
610 611 1.861542 CTGGAAAACGCAATGCCGGA 61.862 55.000 5.05 0.00 0.00 5.14
611 612 1.444212 CTGGAAAACGCAATGCCGG 60.444 57.895 0.00 0.00 0.00 6.13
612 613 1.444212 CCTGGAAAACGCAATGCCG 60.444 57.895 0.00 0.00 0.00 5.69
613 614 0.388520 GTCCTGGAAAACGCAATGCC 60.389 55.000 0.00 0.00 0.00 4.40
614 615 0.729140 CGTCCTGGAAAACGCAATGC 60.729 55.000 0.00 0.00 31.48 3.56
615 616 3.383026 CGTCCTGGAAAACGCAATG 57.617 52.632 0.00 0.00 31.48 2.82
620 621 1.332375 TCTTTTGCGTCCTGGAAAACG 59.668 47.619 0.00 0.00 42.13 3.60
621 622 2.098443 TGTCTTTTGCGTCCTGGAAAAC 59.902 45.455 0.00 0.00 42.13 2.43
622 623 2.370349 TGTCTTTTGCGTCCTGGAAAA 58.630 42.857 0.00 0.00 44.37 2.29
623 624 2.045561 TGTCTTTTGCGTCCTGGAAA 57.954 45.000 0.00 0.00 35.96 3.13
624 625 2.045561 TTGTCTTTTGCGTCCTGGAA 57.954 45.000 0.00 0.00 0.00 3.53
625 626 2.045561 TTTGTCTTTTGCGTCCTGGA 57.954 45.000 0.00 0.00 0.00 3.86
626 627 2.159310 TGTTTTGTCTTTTGCGTCCTGG 60.159 45.455 0.00 0.00 0.00 4.45
630 631 5.671074 TGTTTTTGTTTTGTCTTTTGCGTC 58.329 33.333 0.00 0.00 0.00 5.19
663 664 0.029834 GTGCCTGTTGCTTCTGTGTG 59.970 55.000 0.00 0.00 42.00 3.82
689 690 0.873743 GATCTGCTGTGCTCGTAGGC 60.874 60.000 0.00 0.00 0.00 3.93
690 691 0.593518 CGATCTGCTGTGCTCGTAGG 60.594 60.000 0.00 0.00 0.00 3.18
691 692 0.593518 CCGATCTGCTGTGCTCGTAG 60.594 60.000 0.00 0.00 0.00 3.51
692 693 1.433471 CCGATCTGCTGTGCTCGTA 59.567 57.895 0.00 0.00 0.00 3.43
913 914 0.252696 AGGGGGTGTCACAGCATAGA 60.253 55.000 9.67 0.00 33.07 1.98
916 917 2.759114 CAGGGGGTGTCACAGCAT 59.241 61.111 9.67 0.00 33.07 3.79
930 931 0.823460 GAGAAGAGAGGGTGAGCAGG 59.177 60.000 0.00 0.00 0.00 4.85
955 956 2.126071 ATCACTTCGCCGTCGTGG 60.126 61.111 8.21 0.00 42.50 4.94
959 960 2.167861 GCTGGATCACTTCGCCGTC 61.168 63.158 0.00 0.00 0.00 4.79
968 975 2.439156 GGTGGCTGGCTGGATCAC 60.439 66.667 2.00 0.00 0.00 3.06
1038 1045 0.749649 CGAAGGTGGAGGAGATGAGG 59.250 60.000 0.00 0.00 0.00 3.86
1316 1323 5.125356 TGTAAACTGCATCAATGGATCGAT 58.875 37.500 0.00 0.00 0.00 3.59
1319 1326 7.376866 CGTAATTGTAAACTGCATCAATGGATC 59.623 37.037 0.00 0.00 32.05 3.36
1320 1327 7.195646 CGTAATTGTAAACTGCATCAATGGAT 58.804 34.615 0.00 0.00 32.05 3.41
1322 1329 5.229887 GCGTAATTGTAAACTGCATCAATGG 59.770 40.000 0.00 0.00 32.05 3.16
1323 1330 5.053091 CGCGTAATTGTAAACTGCATCAATG 60.053 40.000 0.00 0.00 32.05 2.82
1337 2678 2.430956 CGTACGTAGTCGCGTAATTGT 58.569 47.619 7.22 3.56 46.81 2.71
1339 2680 1.856014 GCCGTACGTAGTCGCGTAATT 60.856 52.381 15.21 0.00 46.81 1.40
1340 2681 0.316196 GCCGTACGTAGTCGCGTAAT 60.316 55.000 15.21 0.00 46.81 1.89
1371 4048 7.169140 GGTTCTGTTTCAAATCCACAAACATAC 59.831 37.037 0.00 0.00 38.88 2.39
1372 4049 7.206687 GGTTCTGTTTCAAATCCACAAACATA 58.793 34.615 0.00 0.00 38.88 2.29
1692 4427 4.827284 CCTACAAAACCAAGACATCCAGTT 59.173 41.667 0.00 0.00 0.00 3.16
2119 4992 1.078848 GATGCTCTTCACCAGCGGT 60.079 57.895 0.00 0.00 40.01 5.68
2345 5260 4.576053 GGAGCAGCACATGAACATATTACA 59.424 41.667 0.00 0.00 0.00 2.41
2348 5263 2.954318 GGGAGCAGCACATGAACATATT 59.046 45.455 0.00 0.00 0.00 1.28
2349 5264 2.174210 AGGGAGCAGCACATGAACATAT 59.826 45.455 0.00 0.00 0.00 1.78
2350 5265 1.561076 AGGGAGCAGCACATGAACATA 59.439 47.619 0.00 0.00 0.00 2.29
2351 5266 0.330604 AGGGAGCAGCACATGAACAT 59.669 50.000 0.00 0.00 0.00 2.71
2352 5267 0.321919 GAGGGAGCAGCACATGAACA 60.322 55.000 0.00 0.00 0.00 3.18
2353 5268 0.035630 AGAGGGAGCAGCACATGAAC 60.036 55.000 0.00 0.00 0.00 3.18
2460 5379 2.542824 CCCCAACAAAAACGTGCTACTG 60.543 50.000 0.00 0.00 0.00 2.74
2466 5388 6.424176 AAATAAAACCCCAACAAAAACGTG 57.576 33.333 0.00 0.00 0.00 4.49
2530 5517 3.591196 TGCAGAAACAAAGCAACAAGT 57.409 38.095 0.00 0.00 34.97 3.16
2538 5525 3.252400 TGTGTTGCTTGCAGAAACAAAG 58.748 40.909 10.23 0.00 44.84 2.77
2656 5645 1.164411 CGGCATGGCAAAGTACAAGA 58.836 50.000 20.37 0.00 0.00 3.02
2675 5665 3.236816 CAATGTCAAAGAACATGCCGAC 58.763 45.455 0.00 0.00 39.76 4.79
2733 5723 2.289565 GGTTCATTGGCTGCTACCTAC 58.710 52.381 0.00 0.00 0.00 3.18
2744 5734 6.674694 TTCAAACACAAATTGGTTCATTGG 57.325 33.333 0.00 0.00 30.15 3.16
2866 5856 1.004745 ACCAGGTGAAAGTAGCCCATG 59.995 52.381 0.00 0.00 0.00 3.66
3040 6030 1.300233 GTCCTCGCGGATGACCATC 60.300 63.158 6.13 1.50 42.43 3.51
3041 6031 1.330655 AAGTCCTCGCGGATGACCAT 61.331 55.000 6.13 0.29 42.43 3.55
3076 6066 1.216444 GTCAGTGATGAGGCGCTCA 59.784 57.895 7.64 9.80 44.99 4.26
3308 6298 4.045636 AGAACAACAAATGAGCCAACAC 57.954 40.909 0.00 0.00 0.00 3.32
3322 6312 9.634300 CTCGAAGAAACTACTAAAAAGAACAAC 57.366 33.333 0.00 0.00 34.09 3.32
3407 6398 4.355720 TCAGCCCAGGCCAGCTTG 62.356 66.667 11.86 8.37 43.17 4.01
3408 6399 4.357279 GTCAGCCCAGGCCAGCTT 62.357 66.667 11.86 0.00 43.17 3.74
3498 6489 0.603065 TCGCAGAGCACTTAGAAGCA 59.397 50.000 4.59 0.00 0.00 3.91
3521 6512 1.742308 TGCCCTCAAACCCTAACTCT 58.258 50.000 0.00 0.00 0.00 3.24
3569 6560 0.615331 AACATGAGGCGAGGTGACAT 59.385 50.000 0.00 0.00 0.00 3.06
3657 6650 6.010294 ACAACAAATGCTCTCTTCTTGATG 57.990 37.500 0.00 0.00 0.00 3.07
3687 6680 1.453015 TGGGTGCACCACAAGTCAC 60.453 57.895 35.78 17.03 46.80 3.67
3753 6746 4.332428 AAGAGCGGTTTTACACTACACT 57.668 40.909 0.00 0.00 0.00 3.55
3767 6760 6.095160 ACCTCCGTCTTATAATATAAGAGCGG 59.905 42.308 31.00 31.00 42.51 5.52
3782 6775 7.924947 GTGCTTATATTTTAGTACCTCCGTCTT 59.075 37.037 0.00 0.00 0.00 3.01
3902 6899 5.633601 TCATAAGCAACTAGTTCTTCGTGTG 59.366 40.000 17.86 11.67 0.00 3.82
3903 6900 5.779922 TCATAAGCAACTAGTTCTTCGTGT 58.220 37.500 17.86 2.55 0.00 4.49
3906 6903 8.230486 ACAATTTCATAAGCAACTAGTTCTTCG 58.770 33.333 17.86 12.97 0.00 3.79
3913 6910 8.816640 AACCAAACAATTTCATAAGCAACTAG 57.183 30.769 0.00 0.00 0.00 2.57
4033 7030 0.179150 GTGTTGCCGTTGCTTCAACA 60.179 50.000 9.90 3.27 43.70 3.33
4071 7068 8.712285 ATGAAATGGATTTTCTGCTTTATGTG 57.288 30.769 0.42 0.00 43.50 3.21
4090 7087 5.885465 AGAGAGAAAGTGGGTGAATGAAAT 58.115 37.500 0.00 0.00 0.00 2.17
4101 7098 6.696411 AGATACACAAGAAGAGAGAAAGTGG 58.304 40.000 0.00 0.00 0.00 4.00
4122 7119 3.701542 TGTGCGGTGAGAAGAGATAAGAT 59.298 43.478 0.00 0.00 0.00 2.40
4170 7168 1.718757 GGTTGTGCATGGATCGAGCC 61.719 60.000 14.17 14.17 0.00 4.70
4171 7169 1.723870 GGTTGTGCATGGATCGAGC 59.276 57.895 0.00 0.00 0.00 5.03
4172 7170 0.740868 ACGGTTGTGCATGGATCGAG 60.741 55.000 6.59 0.00 0.00 4.04
4179 7177 0.099259 CATGGCTACGGTTGTGCATG 59.901 55.000 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.